Citrus Sinensis ID: 022810
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | 2.2.26 [Sep-21-2011] | |||||||
| Q5C9L6 | 361 | (S)-coclaurine N-methyltr | N/A | no | 0.993 | 0.800 | 0.556 | 7e-99 | |
| C3SBW0 | 356 | Pavine N-methyltransferas | N/A | no | 0.993 | 0.811 | 0.506 | 2e-88 | |
| C3SBS8 | 350 | (S)-tetrahydroprotoberber | N/A | no | 0.993 | 0.825 | 0.5 | 3e-85 | |
| Q108P1 | 358 | (S)-tetrahydroprotoberber | N/A | no | 0.993 | 0.807 | 0.481 | 5e-78 | |
| C3SBU5 | 358 | (S)-tetrahydroprotoberber | N/A | no | 0.993 | 0.807 | 0.477 | 5e-77 | |
| C3SBU4 | 358 | Probable (S)-tetrahydropr | N/A | no | 0.993 | 0.807 | 0.481 | 1e-76 | |
| P0A9H7 | 382 | Cyclopropane-fatty-acyl-p | N/A | no | 0.718 | 0.547 | 0.327 | 4e-29 | |
| P0A9H8 | 382 | Cyclopropane-fatty-acyl-p | yes | no | 0.718 | 0.547 | 0.327 | 4e-29 | |
| P31049 | 394 | Probable fatty acid methy | yes | no | 0.848 | 0.626 | 0.265 | 8e-22 | |
| P0C5C2 | 287 | Cyclopropane mycolic acid | yes | no | 0.786 | 0.797 | 0.264 | 7e-17 |
| >sp|Q5C9L6|CNMT_THLFG (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 360 bits (924), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 222/293 (75%), Gaps = 4/293 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M IA + + +Q YE+P F K++ G K SCCYF + S TL++AE AMLELYCER++
Sbjct: 69 MKIATEVETLDDQMYEVPIDFLKIMNGSNLKGSCCYFKNDSTTLDEAEIAMLELYCERAQ 128
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DGH+VLD+GCG G+L+LY+AQKY N ++T + NS +QKEFIEE+ R L NVE+++A
Sbjct: 129 IKDGHSVLDLGCGQGALTLYVAQKYKNSRVTAVTNSVSQKEFIEEESRKRNLSNVEVLLA 188
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DI+T +M +YDRI +E+FEHMKNY+ LL+KI +WM +D LLFV H CHKTFAYH+E
Sbjct: 189 DITTHKMPDTYDRILVVELFEHMKNYELLLRKIKEWMAKDGLLFVEHICHKTFAYHYEPI 248
Query: 181 NDDDWITKYFFTGGTM--PSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW T+Y F GTM PSA+ LYFQDDVSVV+HW ++GKH+++T+EEWLKR+D N+
Sbjct: 249 DEDDWFTEYVFPAGTMIIPSASFFLYFQDDVSVVNHWTLSGKHFSRTNEEWLKRLDANVE 308
Query: 239 SIKPIMESTYG--KDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
IKP+ + G + +A+K YWR F ++ E+FGYNNGEEWM +H LF+KK
Sbjct: 309 LIKPMFVTITGQCRQEAMKLINYWRGFCLSGMEMFGYNNGEEWMASHVLFKKK 361
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Involved in the biosynthesis of protoberberine alkaloids. N-methyltransferase with a substrate preference for (R,S)-norreticuline but also active with dimethoxytetrahydroisoquinoline. Thalictrum flavum subsp. glaucum (taxid: 150095) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4EC: 0 |
| >sp|C3SBW0|PNMT_THLFG Pavine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (835), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 148/292 (50%), Positives = 216/292 (73%), Gaps = 3/292 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M +A + D + YE+P F ++ GK K+S YF D S TL+++E M++LYCER++
Sbjct: 65 MEMAEEVDTLDAELYEIPLPFLHIMCGKTLKFSPGYFKDESTTLDESEVYMMDLYCERAQ 124
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG ++LD+GCG GSL+L++AQKY CK+TGI NS +QKEFI +QC+ L+L NVEII+
Sbjct: 125 IKDGQSILDLGCGHGSLTLHVAQKYRGCKVTGITNSVSQKEFIMDQCKKLDLSNVEIILE 184
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ FE E +YDRI+++ + EHMKNY+ LKK+S W+ + LLFV H CHK FAY +E
Sbjct: 185 DVTKFETEITYDRIFAVALIEHMKNYELFLKKVSTWIAQYGLLFVEHHCHKVFAYQYEPL 244
Query: 181 NDDDWITKYFFTGGT--MPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW T+Y F GT M S+++LLYFQ+DVSVV+HW ++GKH + ++WLKR+D+N+
Sbjct: 245 DEDDWYTEYIFPSGTLVMSSSSILLYFQEDVSVVNHWTLSGKHPSLGFKQWLKRLDDNID 304
Query: 239 SIKPIMESTYG-KDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+K I ES YG K++A+K+ YWR F IA ++++ NNGEEWM++ LF+KK
Sbjct: 305 EVKEIFESFYGSKEKAMKFITYWRVFCIAHSQMYSTNNGEEWMLSQVLFKKK 356
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N-methyltransferase with a substrate preference for (+,-)-pavine, but also active with (R,S)-stylopine, (S)-scoulerine and (R,S)-tetrahydropalmatine. Thalictrum flavum subsp. glaucum (taxid: 150095) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 4 |
| >sp|C3SBS8|TNMT_ESCCA (S)-tetrahydroprotoberberine N-methyltransferase OS=Eschscholzia californica PE=1 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 146/292 (50%), Positives = 203/292 (69%), Gaps = 3/292 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M ++ + D ++ YELPT+F + V GK K SCCYF D + T+++AE+A ELYCER++
Sbjct: 59 MVMSGEIDTMNKETYELPTAFLEAVFGKTVKQSCCYFKDENSTIDEAEEAAHELYCERAQ 118
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG TVLD+GCG G L LYIA+KY NC +TG+ NSK Q +IE+Q LEL NV++I A
Sbjct: 119 IKDGQTVLDIGCGQGGLVLYIAEKYKNCHVTGLTNSKAQANYIEQQAEKLELTNVDVIFA 178
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ F+ + +YDRI +E EHMKN Q +KK+S WM ED+LLFV H HKTF ++FE
Sbjct: 179 DVTKFDTDKTYDRILVVETIEHMKNIQLFMKKLSTWMTEDSLLFVDHISHKTFNHNFEAL 238
Query: 181 NDDDWITKYFFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW + + F G T+ S++ LLYFQDDVS +DHW+VNG H A++ E W K++D +
Sbjct: 239 DEDDWYSGFIFPKGCVTILSSSTLLYFQDDVSALDHWVVNGMHMARSVEAWRKKLDETIE 298
Query: 239 SIKPIMESTYGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+ + I+E G +AV + + RTF I E F YNNGEEWM+T LF+KK
Sbjct: 299 AAREILEPGLGSKEAVNQVITHIRTFCIGGYEQFSYNNGEEWMITQILFKKK 350
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N-methyltransferase with a broad substrate range, accepting protoberberine alkaloids (R,S)-stylopine and (R,S)-tetrahydropalmatine, and to a lesser extent (R,S)-canadine and (S)-scoulerine. Eschscholzia californica (taxid: 3467) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|Q108P1|TNMT_PAPSO (S)-tetrahydroprotoberberine N-methyltransferase OS=Papaver somniferum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 197/293 (67%), Gaps = 4/293 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M ++ + + ++ YELP+ F + V GK K S CYF+ S T+++AE+A ELYCER++
Sbjct: 66 MEMSGEIETMNKETYELPSEFLEAVFGKTVKQSMCYFTHESATIDEAEEAAHELYCERAQ 125
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG TVLD+GCG G L LYIAQKY NC +TG+ NSK Q ++ +Q L L NV+ I+A
Sbjct: 126 IKDGQTVLDIGCGQGGLVLYIAQKYKNCHVTGLTNSKAQVNYLLKQAEKLGLTNVDAILA 185
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ +E + +YDR+ IE EHMKN Q +KK+S WM +++LLFV H CHKTFA+ FE
Sbjct: 186 DVTQYESDKTYDRLLMIEAIEHMKNLQLFMKKLSTWMTKESLLFVDHVCHKTFAHFFEAV 245
Query: 181 NDDDWITKYFFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW + + F G T+ +AN LLYFQDDVSVVDHW+VNG H A++ + W K +D N+
Sbjct: 246 DEDDWYSGFIFPPGCATILAANSLLYFQDDVSVVDHWVVNGMHMARSVDIWRKALDKNME 305
Query: 239 SIKPI-MESTYGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+ K I + G + V V + RTF + E F NNG+EWMV LF+KK
Sbjct: 306 AAKEILLPGLGGSHETVNGVVTHIRTFCMGGYEQFSMNNGDEWMVAQLLFKKK 358
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Involved in the biosynthesis of protopine and benzophenanthridine alkaloids. Catalyzes the conversion of the protoberberine alkaloids stylopine, canadine, and tetrahydropalmatine to their corresponding N-methylated derivatives. No activity with dimethoxytetrahydroisoquinoline, methylisoquinolinediol, norlaudanosoline, (R,S)-tetrahydroxyberbine, (S)-scoulerine or (R,S)-pavine as substrates. Papaver somniferum (taxid: 3469) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|C3SBU5|TNMT1_PAPBR (S)-tetrahydroprotoberberine N-methyltransferase 1 OS=Papaver bracteatum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 196/293 (66%), Gaps = 4/293 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M ++ + + ++ YELP+ F + V GK K S CYF S T+++AE+A ELYCER++
Sbjct: 66 MEMSGEIETMNKETYELPSEFLEAVFGKTVKQSMCYFKHESATIDEAEEAAHELYCERAQ 125
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG TVLD+GCG G L LYIA+KY C +TG+ NSK Q ++ +Q L L NV+ I+A
Sbjct: 126 IKDGQTVLDIGCGQGGLVLYIARKYKKCHVTGLTNSKAQVNYLLKQAEKLGLTNVDAILA 185
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ +E + +YDR+ IE EHMKN Q +KK+S WM E++LLFV H CHKTFA+ FE
Sbjct: 186 DVTQYESDKTYDRLLMIEAIEHMKNLQLFMKKLSTWMTEESLLFVDHVCHKTFAHFFEAV 245
Query: 181 NDDDWITKYFFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW + + F G T+ +AN LLYFQDDVSVVDHW+VNG H A++ + W K +D N+
Sbjct: 246 DEDDWYSGFIFPPGCATILAANSLLYFQDDVSVVDHWVVNGMHMARSVDIWRKALDKNME 305
Query: 239 SIKPI-MESTYGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+ K I + G +AV V + RTF + E F N+G+EWMV LF+KK
Sbjct: 306 AAKEILLPGLGGSHEAVNGVVTHIRTFCMGGYEQFSMNDGDEWMVAQLLFKKK 358
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N-methyltransferase with a strict substrate specificity for (R,S)-tetrahydropalmatine or (R,S)-stylopine. Papaver bracteatum (taxid: 215227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|C3SBU4|TNMT2_PAPBR Probable (S)-tetrahydroprotoberberine N-methyltransferase 2 OS=Papaver bracteatum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 196/293 (66%), Gaps = 4/293 (1%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
M ++ Q + + YELPT F+ GK K S CYF S T+++AE+A ELYCER++
Sbjct: 66 MGMSGQVEAFTNEVYELPTECFEAAYGKSMKLSGCYFKHESSTIDEAEEASHELYCERAQ 125
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++DG TVLD+GCG G L LY+AQKY NC +TG+ NSK Q +I +Q L L+NV++I+A
Sbjct: 126 IKDGQTVLDIGCGQGGLVLYVAQKYKNCHVTGLTNSKEQVNYILKQAEKLGLRNVDVILA 185
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
D++ +E + +YDRI I + EHMKN Q +KK+S WM ED+LLFV H CHKTF + FE
Sbjct: 186 DVTQYESDKTYDRILVIGVVEHMKNMQLFIKKLSTWMAEDSLLFVDHSCHKTFNHFFEAL 245
Query: 181 NDDDWITKYFFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
++DDW + Y F G T SA+ LLYFQDDVSVVDHW+VNG H+A+T + W K++D N+
Sbjct: 246 DEDDWYSGYIFPPGCATFLSADSLLYFQDDVSVVDHWVVNGMHFARTVDAWRKKLDKNME 305
Query: 239 SIKPIMESTYGKD-QAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
++K I+ G + +AV + + RT + F N+G+EWM LF+KK
Sbjct: 306 AVKEILLPGLGGNHEAVNGVITHIRTCCVGGYVQFSLNDGDEWMNAQLLFKKK 358
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Papaver bracteatum (taxid: 215227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | Back alignment and function description |
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Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
DRI S+ MFEH+ KNY + + +K + + +H K D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKK-----TDLNVDPWINKY 284
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
DRI S+ MFEH+ KNY + + +K + + +H K D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKK-----TDLNVDPWINKY 284
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P31049|FAMT_PSEPU Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 17/264 (6%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY++ +F++L L + YSC YF + TL+ A++ + C + RL G +LDVGCG
Sbjct: 110 HYDVSNAFYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDVGCG 169
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 132
WG L+ + A++Y + K+ GI SK Q + ++ + L + V++ + D + +D
Sbjct: 170 WGGLARFAAREY-DAKVFGITLSKEQLKLGRQRVKAEGLTDKVDLQILDYRDLPQDGRFD 228
Query: 133 RIYSIEMFEHMKNYQNLL---KKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
++ S+ MFEH+ + NL +K+ ++E L+ H K ++I +Y
Sbjct: 229 KVVSVGMFEHV-GHANLALYCQKLFGAVREGGLVMNHGITAKHVDGRPVGRGAGEFIDRY 287
Query: 190 FFTGGTMPSANLLLYF--QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMEST 247
F G +P +++ + + VVD + HYA+T W + ++N L ++
Sbjct: 288 VFPHGELPHLSMISASICEAGLEVVDVESLR-LHYAKTLHHWSENLENQLHKAAALVPE- 345
Query: 248 YGKDQAVKWTVYWRTFFIAVAELF 271
K WR + A F
Sbjct: 346 -------KTLRIWRLYLAGCAYAF 362
|
Pseudomonas putida (taxid: 303) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 1 MPIAIQTDKAKEQ-HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS 59
MP ++ A Q HY+L FF+L L YSC YF TL++A+ A ++L +
Sbjct: 1 MPDELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKL 60
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEII 118
L+ G T+LDVGCGWG+ + +KY + + G+ SK Q +++ E L++ ++
Sbjct: 61 GLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVL 119
Query: 119 VADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC------- 169
+A F + DRI SI FEH + Y + + D ++ +H
Sbjct: 120 LAGWEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEI 177
Query: 170 -HKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVN-----GKHYA 223
+ F +I F GG +PS ++ + + + + V HYA
Sbjct: 178 HERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV----QECASANGFTVTRVQSLQPHYA 233
Query: 224 QTSEEWLKRMDNN 236
+T + W + N
Sbjct: 234 KTLDLWSAALQAN 246
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Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | ||||||
| 343887280 | 357 | coclaurine N-methyltransferase [Citrus u | 1.0 | 0.815 | 1.0 | 1e-174 | |
| 224142824 | 355 | predicted protein [Populus trichocarpa] | 0.993 | 0.814 | 0.882 | 1e-153 | |
| 225429586 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.989 | 0.811 | 0.836 | 1e-147 | |
| 356507030 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.993 | 0.814 | 0.820 | 1e-146 | |
| 449447151 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.993 | 0.814 | 0.823 | 1e-146 | |
| 388493772 | 358 | unknown [Medicago truncatula] gi|3884968 | 0.993 | 0.807 | 0.830 | 1e-146 | |
| 357465789 | 355 | Cyclopropane-fatty-acyl-phospholipid syn | 0.993 | 0.814 | 0.830 | 1e-145 | |
| 217072698 | 358 | unknown [Medicago truncatula] gi|3885016 | 0.993 | 0.807 | 0.816 | 1e-142 | |
| 54291178 | 359 | putative coclaurine N-methyltransferase | 0.993 | 0.805 | 0.799 | 1e-141 | |
| 222635785 | 359 | hypothetical protein OsJ_21767 [Oryza sa | 0.993 | 0.805 | 0.799 | 1e-140 |
| >gi|343887280|dbj|BAK61826.1| coclaurine N-methyltransferase [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust.
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR
Sbjct: 67 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA
Sbjct: 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT
Sbjct: 187 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI
Sbjct: 247 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME 291
KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME
Sbjct: 307 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME 357
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142824|ref|XP_002324742.1| predicted protein [Populus trichocarpa] gi|222866176|gb|EEF03307.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/289 (88%), Positives = 270/289 (93%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+TDK K QHYELPTSFFKLVLGK KYSCCYFSD S TLEDAEKAMLELYCERS+
Sbjct: 67 MPIAIKTDKPKTQHYELPTSFFKLVLGKNLKYSCCYFSDKSNTLEDAEKAMLELYCERSQ 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS TQK I+EQCR L+LQNVEIIVA
Sbjct: 127 LKDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSTTQKVHIDEQCRDLQLQNVEIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
+ISTFEM+ASYDRIYSIEMFEHMKNY +LL KISKWMK+D L FVH+FCHK FAYHFED
Sbjct: 187 NISTFEMQASYDRIYSIEMFEHMKNYGDLLNKISKWMKQDGLHFVHYFCHKQFAYHFEDV 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMPSANLLLYFQDDVS+VDHWLVNGKHY+QTSEEWLKRMD NLA+I
Sbjct: 247 NEDDWITRYFFTGGTMPSANLLLYFQDDVSIVDHWLVNGKHYSQTSEEWLKRMDRNLAAI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMV HFLF KK
Sbjct: 307 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFNKK 355
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429586|ref|XP_002280292.1| PREDICTED: (S)-coclaurine N-methyltransferase [Vitis vinifera] gi|296081677|emb|CBI20682.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 241/288 (83%), Positives = 268/288 (93%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+T+ K QHYELPTSFFKLVLGK KYSCCYF D S TLEDAE AMLE+YC+R++
Sbjct: 67 MPIAIKTEDPKSQHYELPTSFFKLVLGKNLKYSCCYFPDKSSTLEDAENAMLEMYCKRAQ 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
+EDGHTVLD+GCGWGSLSLYIAQKY+NC+ITGICNSKTQK +IEEQC+ L+LQNVEIIVA
Sbjct: 127 VEDGHTVLDIGCGWGSLSLYIAQKYTNCRITGICNSKTQKAYIEEQCQELQLQNVEIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DIST EMEA+YDRI+SIEMFEHMKNY++LLKKIS WMK+D+LLFVHHFCHK FAYHFED
Sbjct: 187 DISTLEMEATYDRIFSIEMFEHMKNYKDLLKKISGWMKQDSLLFVHHFCHKAFAYHFEDK 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
+DDDWIT+YFF+GGTMP+ANLLLYFQ+DVSVVDHWLVNGKHYAQTSEEWLKRMD NLASI
Sbjct: 247 SDDDWITRYFFSGGTMPAANLLLYFQEDVSVVDHWLVNGKHYAQTSEEWLKRMDKNLASI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
KPIMESTYGKD AVKWTVYWRTFFI+VAELF YN+GEEWMV FLF+K
Sbjct: 307 KPIMESTYGKDSAVKWTVYWRTFFISVAELFEYNDGEEWMVALFLFKK 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507030|ref|XP_003522274.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 237/289 (82%), Positives = 263/289 (91%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI TDK K QHYELPT+FFKLVLG KYSCCYFS AS TL+DAE+AML+LYCERS
Sbjct: 67 MPIAINTDKPKSQHYELPTAFFKLVLGNNLKYSCCYFSSASMTLDDAEEAMLKLYCERSN 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSL+LYIA+ Y+NC++TGICNS TQK +IEE+CR L+LQN+ IIVA
Sbjct: 127 LKDGHTVLDVGCGWGSLALYIAKNYTNCRVTGICNSTTQKAYIEEKCRDLQLQNLNIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEME SYDRI+SIEMFEHMKNY++LLKKISKWMKED+LLFVH+FCHK FAYHFED
Sbjct: 187 DISTFEMETSYDRIFSIEMFEHMKNYKDLLKKISKWMKEDSLLFVHYFCHKAFAYHFEDK 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMPSANLLLYFQDDV+V +HWLVNGKHYAQTSEEWLKRMD + I
Sbjct: 247 NEDDWITRYFFTGGTMPSANLLLYFQDDVTVTNHWLVNGKHYAQTSEEWLKRMDQRMTFI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIM+STYGKD A KWT YWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 307 KPIMQSTYGKDSATKWTAYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447151|ref|XP_004141332.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Cucumis sativus] gi|449486691|ref|XP_004157370.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 238/289 (82%), Positives = 266/289 (92%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+TDK K QHYE+PTSFFKLVLGK KYSCCYF+D S TLEDAE AML++YCERS+
Sbjct: 67 MPIAIKTDKPKAQHYEVPTSFFKLVLGKNLKYSCCYFNDKSSTLEDAEDAMLQMYCERSQ 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSLSLYIAQKY NC +TGICNS TQK +IE++C+ L+L NV IIVA
Sbjct: 127 LKDGHTVLDVGCGWGSLSLYIAQKYKNCTVTGICNSITQKAYIEDRCQDLQLHNVNIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DIST+EMEA YDRI+SIEMFEHMKNY++LLKKIS WMK+D+LLFVH+FCHK FAYHFED
Sbjct: 187 DISTYEMEAEYDRIFSIEMFEHMKNYKDLLKKISGWMKQDSLLFVHYFCHKVFAYHFEDV 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
NDDDWIT+YFF GGTM S+NLLLYFQDDVS+VDHWLVNGKHY+QTSEEWLKRMD N+ASI
Sbjct: 247 NDDDWITRYFFEGGTMLSSNLLLYFQDDVSIVDHWLVNGKHYSQTSEEWLKRMDENIASI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIM +TYGKD AVKWTVYWRTFFIAVAELFGYNNGEEWMV+HFLF+KK
Sbjct: 307 KPIMATTYGKDSAVKWTVYWRTFFIAVAELFGYNNGEEWMVSHFLFKKK 355
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388493772|gb|AFK34952.1| unknown [Medicago truncatula] gi|388496886|gb|AFK36509.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/289 (83%), Positives = 263/289 (91%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+LYCERS
Sbjct: 70 MPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKLYCERSN 129
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSL+L+IA+ YS+ ++TGICNS TQK FIEE+CR L+LQNV+IIVA
Sbjct: 130 LKDGHTVLDVGCGWGSLTLFIAKNYSSSRVTGICNSTTQKAFIEEKCRELQLQNVDIIVA 189
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEMEASYDRI+SIEMFEHMKNY++LLKKIS WMKED LLFVHHFCHK FAYHFED
Sbjct: 190 DISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISIWMKEDGLLFVHHFCHKAFAYHFEDK 249
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD N SI
Sbjct: 250 NEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMDKNKTSI 309
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 310 KPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465789|ref|XP_003603179.1| Cyclopropane-fatty-acyl-phospholipid synthase [Medicago truncatula] gi|355492227|gb|AES73430.1| Cyclopropane-fatty-acyl-phospholipid synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/289 (83%), Positives = 263/289 (91%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+LYCERS
Sbjct: 67 MPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKLYCERSN 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCGWGSL+L+IA+ YS+ ++TGICNS TQK FIEE+CR L+LQNV+IIVA
Sbjct: 127 LKDGHTVLDVGCGWGSLTLFIAKNYSSSRVTGICNSTTQKAFIEEKCRELQLQNVDIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEMEASYDRI+SIEMFEHMKNY++LLKKIS WMKED LLFVHHFCHK FAYHFED
Sbjct: 187 DISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISIWMKEDGLLFVHHFCHKAFAYHFEDK 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD N SI
Sbjct: 247 NEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMDKNKTSI 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 307 KPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072698|gb|ACJ84709.1| unknown [Medicago truncatula] gi|388501626|gb|AFK38879.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/289 (81%), Positives = 260/289 (89%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+LYCERS
Sbjct: 70 MPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKLYCERSN 129
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DGHTVLDVGCG GSL+L+IA+ YS+ ++ GICNS TQK FIEE+CR L+LQ+V+IIVA
Sbjct: 130 LKDGHTVLDVGCGRGSLTLFIAKNYSSSRVAGICNSTTQKAFIEEKCRELQLQDVDIIVA 189
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFEMEASYDRI+SIEMFEHMKNY++L KKIS WMKED LLFVHHFCHK FAYHFED
Sbjct: 190 DISTFEMEASYDRIFSIEMFEHMKNYKDLPKKISIWMKEDGLLFVHHFCHKAFAYHFEDK 249
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD N SI
Sbjct: 250 NEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMDKNKTSI 309
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
KPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 310 KPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|54291178|dbj|BAD61850.1| putative coclaurine N-methyltransferase [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust.
Identities = 231/289 (79%), Positives = 258/289 (89%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+T+KAK+QHYELPT+FFKLVLG+ KYS CYF D S TLEDAE AMLELYCER++
Sbjct: 71 MPIAIETEKAKDQHYELPTTFFKLVLGRNLKYSSCYFPDESSTLEDAEVAMLELYCERAQ 130
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DG T+LDVGCGWGSLSLYIA+KYS C ITGICNS TQK FIEEQCR EL NVEIIVA
Sbjct: 131 LQDGQTILDVGCGWGSLSLYIAKKYSKCSITGICNSTTQKAFIEEQCRENELSNVEIIVA 190
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DIS FEME S+DRI SIEMFEHMKNY+ LLKK+S+WMKED+LLFVH+FCHKTFAYHFED
Sbjct: 191 DISKFEMERSFDRIISIEMFEHMKNYKALLKKLSRWMKEDSLLFVHYFCHKTFAYHFEDN 250
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMPSANLLLYFQDDVS+ +HWLV+G HYA+TSEEWLKRMD N+ SI
Sbjct: 251 NEDDWITRYFFTGGTMPSANLLLYFQDDVSIANHWLVSGTHYARTSEEWLKRMDKNITSI 310
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+PI E TYGK+ A KW YWRTFFI+VAELFGYNNG+EWMV HFLFRKK
Sbjct: 311 RPIFEKTYGKESATKWIAYWRTFFISVAELFGYNNGDEWMVAHFLFRKK 359
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222635785|gb|EEE65917.1| hypothetical protein OsJ_21767 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/289 (79%), Positives = 258/289 (89%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI+T+KAK+QHYELPT+FFKLVLG+ KYS CYF D S TLEDAE AMLELYCER++
Sbjct: 71 MPIAIETEKAKDQHYELPTTFFKLVLGRNLKYSSCYFPDESSTLEDAEVAMLELYCERAQ 130
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L+DG T+LDVGCGWGSLSLYIA+KYS C ITGICNS TQK FIEEQCR EL NVEIIVA
Sbjct: 131 LQDGQTILDVGCGWGSLSLYIAKKYSKCSITGICNSTTQKAFIEEQCRENELSNVEIIVA 190
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DIS FEME S+DRI SIEMFEHMKNY+ LLKK+S+WMKED+LLFVH+FCHKTFAYHFED
Sbjct: 191 DISKFEMERSFDRIISIEMFEHMKNYKALLKKLSRWMKEDSLLFVHYFCHKTFAYHFEDN 250
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
N+DDWIT+YFFTGGTMPSANLLLYFQDDVS+ +HWLV+G HYA+TSEEWLKRMD N+ SI
Sbjct: 251 NEDDWITRYFFTGGTMPSANLLLYFQDDVSIANHWLVSGTHYARTSEEWLKRMDKNITSI 310
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
+PI E TYGK+ A KW YWRTFFI+VAELFGYNNG+EWMV HFLFRKK
Sbjct: 311 RPIFEKTYGKESATKWIAYWRTFFISVAELFGYNNGDEWMVAHFLFRKK 359
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | ||||||
| TAIR|locus:2125924 | 355 | AT4G33110 [Arabidopsis thalian | 0.993 | 0.814 | 0.775 | 1.9e-129 | |
| TAIR|locus:2125934 | 355 | AT4G33120 [Arabidopsis thalian | 0.993 | 0.814 | 0.733 | 8e-124 | |
| TIGR_CMR|GSU_2318 | 359 | GSU_2318 "cyclopropane-fatty-a | 0.982 | 0.796 | 0.498 | 1.4e-80 | |
| UNIPROTKB|G4MND9 | 351 | MGG_06926 "Cyclopropane-fatty- | 0.965 | 0.800 | 0.451 | 1.4e-69 | |
| UNIPROTKB|P0A9H7 | 382 | cfa "cyclopropane fatty acyl p | 0.718 | 0.547 | 0.327 | 8.8e-31 | |
| TIGR_CMR|CJE_1317 | 387 | CJE_1317 "cyclopropane-fatty-a | 0.862 | 0.648 | 0.297 | 3.5e-27 | |
| DICTYBASE|DDB_G0283847 | 430 | DDB_G0283847 "cyclopropane fat | 0.766 | 0.518 | 0.297 | 3.1e-24 | |
| UNIPROTKB|Q9KSY4 | 432 | VC_1122 "Cyclopropane-fatty-ac | 0.845 | 0.569 | 0.283 | 1.7e-22 | |
| TIGR_CMR|VC_1122 | 432 | VC_1122 "cyclopropane-fatty-ac | 0.845 | 0.569 | 0.283 | 1.7e-22 | |
| TIGR_CMR|BA_3460 | 390 | BA_3460 "cyclopropane-fatty-ac | 0.879 | 0.656 | 0.267 | 5.3e-22 |
| TAIR|locus:2125924 AT4G33110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
Identities = 224/289 (77%), Positives = 261/289 (90%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI T+K K QHYELPT+FF+LVLG+ KYS CYFS+ S +LEDAE+A+L LYCER++
Sbjct: 67 MPIAIHTEKPKTQHYELPTAFFELVLGRNMKYSSCYFSNDSSSLEDAEEAILALYCERAK 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
+EDG +VLD+GCGWGSLSLYIA+KYS CK+TGICNSKTQK FI+E+CR L LQN+EIIVA
Sbjct: 127 VEDGQSVLDIGCGWGSLSLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQNIEIIVA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFE E +YDRI+SIEMFEHMKNY LLKKI KWMKED+LLFVH+FCHKTFAYHFED
Sbjct: 187 DISTFEHEGTYDRIFSIEMFEHMKNYGELLKKIGKWMKEDSLLFVHYFCHKTFAYHFEDV 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
NDDDWIT++FF+GGTMPSA+LLLYFQ++VS+VDHWLV+G HYA+TSEEWLKRMD + ++
Sbjct: 247 NDDDWITRHFFSGGTMPSADLLLYFQENVSIVDHWLVSGTHYAKTSEEWLKRMDKEIVAV 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
K IME TYGK++AVKW VYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 307 KKIMEVTYGKEEAVKWMVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
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| TAIR|locus:2125934 AT4G33120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 212/289 (73%), Positives = 254/289 (87%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
MPIAI T+ AK QHYELPT+FF+ LG+ KYSCCY+S+ S +LE+A +AML L CER++
Sbjct: 67 MPIAINTETAKTQHYELPTAFFEHALGRNIKYSCCYYSNDSSSLEEAGEAMLALSCERAK 126
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
+EDG +VLD+GCGWGSL+LYIA+KYS CK+TGICNSKTQK FI+E+CR L LQNVEII A
Sbjct: 127 VEDGQSVLDIGCGWGSLTLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQNVEIIAA 186
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
DISTFE E +YDRI+SIEMFEHMKNY LLKKI WMKED+LLFVH+ CHKT+AYHFED
Sbjct: 187 DISTFEHEGTYDRIFSIEMFEHMKNYGELLKKIGNWMKEDSLLFVHYLCHKTYAYHFEDV 246
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
NDDDWIT++FF+GGTMPSA+LLLYFQ++VS++DHWLVNG HYA+TSEEWLK MD + ++
Sbjct: 247 NDDDWITRHFFSGGTMPSADLLLYFQENVSIMDHWLVNGTHYAKTSEEWLKGMDKEIVAV 306
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289
K IME TYGK++AVKWTVYWRTFFIA+AELF YNNG+EWM+ HFLF+KK
Sbjct: 307 KEIMEVTYGKEEAVKWTVYWRTFFIALAELFAYNNGDEWMIAHFLFKKK 355
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| TIGR_CMR|GSU_2318 GSU_2318 "cyclopropane-fatty-acyl-phospholipid synthase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 143/287 (49%), Positives = 195/287 (67%)
Query: 2 PIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRL 61
P+A++T A +QHYELP FF LVLG KYSCC + L AE+AML L C+R+ L
Sbjct: 53 PLAMETGAANKQHYELPPDFFSLVLGPRRKYSCCLYPPGVDDLATAEEAMLRLTCQRAGL 112
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
DG +L++GCGWGSL+L++A+ Y + +IT + NS Q++FI+ CR NV +I AD
Sbjct: 113 ADGMDILELGCGWGSLTLWMAEHYPDARITAVSNSAPQRQFIQGACRGRGFGNVRVITAD 172
Query: 122 ISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTN 181
++ F +E ++DR+ S+EMFEHM+NY LL++I+ W+K+D LFVH FCH+T AY F+
Sbjct: 173 MNDFTIEKTFDRVVSVEMFEHMRNYAELLRRIAGWLKDDGRLFVHIFCHRTLAYLFQTDG 232
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241
+DDW+ +YFFTGG MPS +LL YF D ++V DHW V G+HY +T + WL+RMD I
Sbjct: 233 EDDWMGRYFFTGGIMPSDHLLFYFNDHLAVEDHWRVGGRHYQRTCDGWLERMDTERRKIL 292
Query: 242 PIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
I Y D V W WR FF+A +ELFGY+ G EW V+H+L RK
Sbjct: 293 EIFWDVYEGDAPV-WFQRWRVFFMACSELFGYSEGNEWFVSHYLLRK 338
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| UNIPROTKB|G4MND9 MGG_06926 "Cyclopropane-fatty-acyl-phospholipid synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 129/286 (45%), Positives = 184/286 (64%)
Query: 2 PIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRL 61
PIA++T A QHYE+ T LG KYS C + +TL AE AML Y E+++L
Sbjct: 55 PIAVETAAANSQHYEVGTGVLAACLGPRMKYSACLYPKGGETLAQAEVAMLRTYLEKAQL 114
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
EDG +LD+GCGWGS +L+ A+ +IT NSKTQKE+I+ + + L N+++I +
Sbjct: 115 EDGMDILDLGCGWGSGALFFAEMLPGARITAFSNSKTQKEYIDSKAQEKSLTNLKVITGN 174
Query: 122 ISTFEMEAS-YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
I+ +E E + +DR+ SIEMFEHMKNY+ L+ K+S+ ++ LFVH F H+ Y FE+
Sbjct: 175 IADYEFEQNTFDRVVSIEMFEHMKNYELLMAKVSRALRPGGKLFVHIFAHRDSPYDFEE- 233
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
W++ +FFTGGTMPS +LLLYFQ ++ + W +NGKHY++T E+WL +M N I
Sbjct: 234 ---GWMSTHFFTGGTMPSTDLLLYFQREMKIEKQWWINGKHYSKTCEDWLAKMIKNKKEI 290
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLF 286
P + TYG+ A W W+ F++A +ELF Y NG+ W V H+LF
Sbjct: 291 WPHLVETYGEADATTWYNRWQIFYMACSELFNYENGDTWGVAHYLF 336
|
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| UNIPROTKB|P0A9H7 cfa "cyclopropane fatty acyl phospholipid synthase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 73/223 (32%), Positives = 117/223 (52%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDADN-LESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
DRI S+ MFEH+ KNY + + +K + + +H T D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLH-----TIGSKKTDLNVDPWINKY 284
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
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| TIGR_CMR|CJE_1317 CJE_1317 "cyclopropane-fatty-acyl-phospholipid synthase, putative" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 84/282 (29%), Positives = 139/282 (49%)
Query: 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGH 65
Q K + HY++ F+KL L YSC YF + + TL +A+ +E ++ L++G
Sbjct: 104 QESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLKEGE 163
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST 124
+LD+GCGWG LS+ AQKY K+ GI S+ Q + +E+ + L L++ +EI + +
Sbjct: 164 KLLDIGCGWGWLSIMAAQKYG-VKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQD 222
Query: 125 FEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
E E +D++ S+ MFEH+ +N K+ + +K + +H A TN
Sbjct: 223 LEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSI----LAMFEGKTNA 278
Query: 183 DDWITKYFFTGGTMPSANLLLYFQDDVSVVDHW---LVNGK----HYAQTSEEWLKRMDN 235
WI KY F GG +PS ++ VS + W L+ + HYA+T + W D
Sbjct: 279 --WIDKYIFPGGYLPS------LREVVSAMSEWDFHLLLAESLRMHYAKTLDLW----DE 326
Query: 236 NLASIKPIMESTYGKDQAVKWTVYWRT----FFIAVAELFGY 273
N + + Y ++ W +Y R+ F + +LF +
Sbjct: 327 NFNEVLDKVREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQF 368
|
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| DICTYBASE|DDB_G0283847 DDB_G0283847 "cyclopropane fatty acid synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 69/232 (29%), Positives = 118/232 (50%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY+L FKL L K YSC YF+ + LE+A+ + +++ L+ H +L++GCG
Sbjct: 152 HYDLSNDMFKLFLDKTMSYSCAYFNHREQDLEEAQYNKIRKLIDQANLKKDHHLLEIGCG 211
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 133
WG+L++ A K + C++TGI S+ Q ++ E+ + L++ I + I + +D
Sbjct: 212 WGALAIE-AVKRTGCRVTGISLSQEQLKYGRERVKEEGLED-RIDLQYIDYRNVVGQFDS 269
Query: 134 IYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDD-DWITKYF 190
I S EM E + +NY+ + + + +K + +L + K FE D+I KY
Sbjct: 270 IISCEMLEAVGYENYKTYFQSVERLLKPNGVLVLQFITFKD--QDFEGLKKRCDFIQKYI 327
Query: 191 FTGGTMPSANLLLYFQDDVS--VVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
F GG +PS ++ + S V+ + + G HYA T + W +N I
Sbjct: 328 FPGGLLPSITAVINSATENSNLVLQNSVTFGTHYALTLDIWRNNFFSNKEKI 379
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| UNIPROTKB|Q9KSY4 VC_1122 "Cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 75/265 (28%), Positives = 131/265 (49%)
Query: 8 DKAKE---QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDG 64
D+AK+ QHY+L ++L L + YS F+ +LE A++A ++ CE+ +L+
Sbjct: 157 DQAKDNIHQHYDLGNELYQLFLDEEMLYSSALFTQPELSLEQAQQAKMQRLCEQLQLKPT 216
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS 123
VL++G GWG++++Y+AQ Y CK+T S+ Q + +++ L L N + ++ D
Sbjct: 217 DHVLEIGTGWGAMAIYMAQHYG-CKVTTTTISEEQYAYAQQKITALGLNNQITLLKQDYR 275
Query: 124 TFEMEASYDRIYSIEMFEHM-KNY-QNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTN 181
+ YD++ SIEM E + K Y L + +K + + Y +N
Sbjct: 276 L--LSGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRGKMAIQAITIADQRYE-SYSN 332
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDD-VSVVDHWLVN-GKHYAQTSEEWLKRMDNNLAS 239
+ D+I KY F GG +PS ++L +V L + G YA T + W R + L
Sbjct: 333 NVDFIQKYIFPGGFLPSISVLTELATKRTGLVLRNLHDIGIDYALTLQHWRDRFEQQLPK 392
Query: 240 IKPIMESTYGKDQAVKWTVYWRTFF 264
++ + G D+ ++ WR +F
Sbjct: 393 VRDL-----GYDE--RFIRMWRYYF 410
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| TIGR_CMR|VC_1122 VC_1122 "cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 75/265 (28%), Positives = 131/265 (49%)
Query: 8 DKAKE---QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDG 64
D+AK+ QHY+L ++L L + YS F+ +LE A++A ++ CE+ +L+
Sbjct: 157 DQAKDNIHQHYDLGNELYQLFLDEEMLYSSALFTQPELSLEQAQQAKMQRLCEQLQLKPT 216
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS 123
VL++G GWG++++Y+AQ Y CK+T S+ Q + +++ L L N + ++ D
Sbjct: 217 DHVLEIGTGWGAMAIYMAQHYG-CKVTTTTISEEQYAYAQQKITALGLNNQITLLKQDYR 275
Query: 124 TFEMEASYDRIYSIEMFEHM-KNY-QNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTN 181
+ YD++ SIEM E + K Y L + +K + + Y +N
Sbjct: 276 L--LSGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRGKMAIQAITIADQRYE-SYSN 332
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDD-VSVVDHWLVN-GKHYAQTSEEWLKRMDNNLAS 239
+ D+I KY F GG +PS ++L +V L + G YA T + W R + L
Sbjct: 333 NVDFIQKYIFPGGFLPSISVLTELATKRTGLVLRNLHDIGIDYALTLQHWRDRFEQQLPK 392
Query: 240 IKPIMESTYGKDQAVKWTVYWRTFF 264
++ + G D+ ++ WR +F
Sbjct: 393 VRDL-----GYDE--RFIRMWRYYF 410
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| TIGR_CMR|BA_3460 BA_3460 "cyclopropane-fatty-acyl-phospholipid synthase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 5.3e-22, P = 5.3e-22
Identities = 75/280 (26%), Positives = 133/280 (47%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY++ F+KL L + YSC YF + +L A+ + ++ L+ G T+LD+GCG
Sbjct: 115 HYDIGNDFYKLWLDETMTYSCAYFQNEQDSLTTAQHNKVNHILKKLNLQKGDTLLDIGCG 174
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 132
WG L A++Y K G+ S+ Q E+ + L + VE+ + D + + +D
Sbjct: 175 WGELITAAAKQYG-VKAMGVTLSEEQYAKASERIKQEGLTDLVEVSLLDYRDIKNQ-KFD 232
Query: 133 RIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF 190
+I S+ M EH+ N + ++ + + + +H C + A + TN WI KY
Sbjct: 233 KIVSVGMIEHVGKDNITQYFETVNTLLNDGGISLLH--CITSPA-NGGATNG--WIEKYI 287
Query: 191 FTGGTMPSANLLL--YFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTY 248
F GG +P+ N L+ + +VD + +HY +T + W + +N + ++
Sbjct: 288 FPGGYVPAVNELITNMTNEQFFIVDVESLR-RHYGKTLQHWARNFENVMEEVRKT----- 341
Query: 249 GKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
KD+ ++ WR + A A F N + + F+F K
Sbjct: 342 -KDE--RFIRMWRLYLNACAASFFTGNID---LHQFVFTK 375
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5C9L6 | CNMT_THLFG | 2, ., 1, ., 1, ., 1, 4, 0 | 0.5563 | 0.9931 | 0.8005 | N/A | no |
| C3SBW0 | PNMT_THLFG | 2, ., 1, ., 1, ., n, 1, 4 | 0.5068 | 0.9931 | 0.8117 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.79 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_XVIII0095 | hypothetical protein (355 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XV.984.1 | hypothetical protein (283 aa) | • | • | 0.798 | ||||||
 | eugene3.100440002 | Predicted protein (291 aa) | • | 0.558 | |||||||
 | gw1.XI.908.1 | SubName- Full=Putative uncharacterized protein; (281 aa) | • | 0.518 | |||||||
 | estExt_fgenesh4_pm.C_LG_XIV0228 | hypothetical protein (327 aa) | • | • | 0.474 | ||||||
 | fgenesh4_pm.C_LG_VIII000723 | hypothetical protein (862 aa) | • | • | • | 0.417 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 291 | |||
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 6e-70 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 2e-44 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 9e-40 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 8e-15 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-13 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-11 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-10 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 4e-10 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 7e-10 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-09 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 3e-09 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 2e-07 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 7e-07 | |
| PRK08287 | 187 | PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-meth | 2e-06 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 4e-06 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 5e-06 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 7e-06 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 9e-06 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 1e-05 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-05 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 3e-05 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 5e-05 | |
| TIGR00138 | 181 | TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-meth | 1e-04 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 2e-04 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 2e-04 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 3e-04 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 4e-04 | |
| pfam02527 | 184 | pfam02527, GidB, rRNA small subunit methyltransfer | 4e-04 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 5e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.001 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 0.001 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.003 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 0.004 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 6e-70
Identities = 84/287 (29%), Positives = 135/287 (47%), Gaps = 19/287 (6%)
Query: 1 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 60
+ + + HY+L F++L L YSC YF D TLE+A++A L+L E+
Sbjct: 10 RHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLG 69
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV 119
L+ G T+LD+GCGWG L++Y A++Y + G+ S+ Q + E++ L+ NVE+ +
Sbjct: 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128
Query: 120 ADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHF 177
D F E +DRI S+ MFEH+ +NY + KK+ +K + +H
Sbjct: 129 QDYRDF--EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI----TGPDQ 182
Query: 178 EDTNDDDWITKYFFTGGTMPSANLLL-YFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNN 236
E D+I KY F GG +PS + +L + VV HYA+T W +R + N
Sbjct: 183 EFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEAN 242
Query: 237 LASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTH 283
+ + + + W + A A F + + T
Sbjct: 243 RDEAIALYDERFYR--------MWELYLAACAAAFRAGYIDVFQFTL 281
|
Length = 283 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-44
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 14/232 (6%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
++HY+L F+ +L +YSC Y+ DA TLE+A++A L+L C + +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFEAMLDPRMQYSCGYWKDAD-TLEEAQEAKLDLICRKLQLKPGMRVLDIG 175
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG L+ Y A+ Y + G+ S Q++ +E+C L VEI + D ++ +
Sbjct: 176 CGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLP---VEIRLQDYR--DLNGQF 229
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
DRI S+ MFEH+ KNY+ + + + +K D L +H T + DTN D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH-----TIGSNKTDTNVDPWINKY 284
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241
F G +PS + + + V++ W G Y +T W + + +
Sbjct: 285 IFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELA 336
|
Length = 383 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 9e-40
Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 25/272 (9%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY+L FF L L YSC YF TLE+A++A L+L ++ L+ G T+LD+GCG
Sbjct: 13 HYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGLKPGMTLLDIGCG 72
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 132
WG L A++Y + + G+ SK Q + ++ LQ VE+++ D F+ +D
Sbjct: 73 WGGLMRRAAERY-DVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLLQDYRDFDEP--FD 129
Query: 133 RIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDD----WI 186
RI S+ MFEH+ +NY KK+ + L+ + H H ++T++ +I
Sbjct: 130 RIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLL----HTITGLHPDETSERGLPLKFI 185
Query: 187 TKYFFTGGTMPSANLLL-YFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIME 245
KY F GG +PS ++++ + V+ HYA+T + W + + N +
Sbjct: 186 DKYIFPGGELPSISMIVESSSEAGFTVEDVESLRPHYAKTLDLWAENLQANKDEAIAL-- 243
Query: 246 STYGKDQAVKWTVYWRTFFIAVAELF--GYNN 275
++ W +Y A F GY +
Sbjct: 244 --QSEEFYRMWMLYLT----GCAVAFRIGYID 269
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 8e-15
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
G VLD+GCG GSL++ +A+ + ++TG+ S E E ++ + + D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
Query: 123 ST-FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168
++ +D ++ + + LL ++ +K L ++
Sbjct: 61 PDALDLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
L+ G VLD+GCG G L+ +A+K ++ GI S+ E +E + L +NVE I
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 120 ADISTFEM----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH-KTFA 174
DI + S+D + S E+ H+ + +L++I + +K +L V
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELP 120
Query: 175 YHFEDTN 181
ED
Sbjct: 121 ALLEDLE 127
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-11
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125
VLD+GCG G+L+L +A ++TG+ S E + L NVE++ D
Sbjct: 1 RVLDLGCGTGALALALA-SGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 126 EMEA--SYDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHF 168
EA S+D I S H +++ L++ + +K +L +
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-10
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---CRVLELQNVEIIVADIST 124
LD+GCG G+L + + + TG+ S E E+ +L+ V + V D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163
+ S+D + + + H+ + + +L+ + + +K +L
Sbjct: 61 LD-PGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-10
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 45 EDAEKAMLELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 103
E+ + L RL+ G VLD+GCG G L + ++ +TG+ S
Sbjct: 3 RQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRER--GFDVTGVDPSPAAVLIF 60
Query: 104 EEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163
YD I + E+ EH+ + LL+++ + +K +L
Sbjct: 61 SLFDAPDPAVL-------------AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVL 107
Query: 164 FVHHFCHKTFAYHFED 179
+ A F +
Sbjct: 108 LISTPLADDDARLFAN 123
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-10
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTF 125
VLD GCG+GS + +A+++ + ++ G S Q E E+ R L LQ + I D +
Sbjct: 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD 62
Query: 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163
+YD ++ E+ H+K+ +L IS+ +K+ L
Sbjct: 63 PFPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHL 100
|
Length = 224 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-09
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--F 125
LDVGCG G L+ +A++ ++TG+ S E + R + + +V D F
Sbjct: 1 LDVGCGTGLLAEALARRG-GARVTGVDLSP---EMLA-LAR--KRAPRKFVVGDAEDLPF 53
Query: 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
+ S+D + S + H+ + + L++I++ +K L +
Sbjct: 54 P-DESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
RL G + D+G G GS+++ A+ N ++ I + + IE R + N+ I+
Sbjct: 16 RLRPGDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSNIVIVE 75
Query: 120 AD 121
D
Sbjct: 76 GD 77
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
R G + D+G G GS+++ A + ++ I + E IE + N+E++
Sbjct: 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE 90
Query: 120 ADIS-TFEMEASYDRIY 135
D S D I+
Sbjct: 91 GDAPEALPDLPSPDAIF 107
|
Length = 187 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-07
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV 119
L+ G VLDVGCG G Y+A+ + + + GI S F E R + + +VE V
Sbjct: 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALE--RAIGRKCSVEFEV 320
Query: 120 ADISTFEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
AD + + S+D IYS + H+++ L + KW+K + + +C
Sbjct: 321 ADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371
|
Length = 475 |
| >gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ L ++DVG G GS+S+ A ++ + ++T I + I+E + N++
Sbjct: 25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNID 84
Query: 117 IIVADISTFEMEASYDRIY 135
II + E+ D I+
Sbjct: 85 IIPG-EAPIELPGKADAIF 102
|
Length = 187 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ----KEFIEEQ--CRVLELQNVEIIV 119
++DVGCG G S Y+A+KY + GI S Q Q + Q V
Sbjct: 121 RIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQGLSDKVSFQ-----V 174
Query: 120 AD--ISTFEMEASYDRIYSIEMFEHM 143
AD FE + +D ++S+E EHM
Sbjct: 175 ADALNQPFE-DGQFDLVWSMESGEHM 199
|
Length = 340 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE-QCRVLELQN 114
R L G VLDVGCG G LS +A+ +TGI S ++ IE + LE
Sbjct: 53 RLRFDLP-GLRVLDVGCGGGILSEPLARL--GASVTGIDAS---EKPIEVAKLHALE-SG 105
Query: 115 VEIIVADISTFEMEA---SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
V I + ++ + +D + +E+ EH+ + ++ L+ +K +K +LF+
Sbjct: 106 VNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159
|
Length = 243 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 115
++ G VLDV CG G ++L +A+ ++ G+ S++ E E+ + +QNV
Sbjct: 44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNV 103
Query: 116 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
E +V D F + S+D + ++ + LK++
Sbjct: 104 EFVVGDAENLPFP-DNSFDAVTISFGLRNVTDIDKALKEM 142
|
Length = 238 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-06
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI- 122
G VLD+GCG+G L +A++ + ++T + + E L+N E+ +D+
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLY 91
Query: 123 STFEMEASYDRIYS 136
S E +D I S
Sbjct: 92 SAVE-PGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
+ G VLD+GCG+G L L +A+K K+T + + E + ++N E+ +
Sbjct: 156 PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215
Query: 121 DISTFEMEASYDRIYS 136
++ +E +D I S
Sbjct: 216 NLYE-PVEGKFDLIIS 230
|
Length = 300 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 29/127 (22%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----QNVEIIVAD 121
+LD+G G G+L L +AQ+ KI G+ + Q+E E R + L + +++I AD
Sbjct: 47 RILDLGAGNGALGLLLAQRTEKAKIVGV---EIQEEAAEMAQRNVALNPLEERIQVIEAD 103
Query: 122 I---------STFEM------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 160
I ++F++ + + + +I E + ++L++ +K +K
Sbjct: 104 IKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163
Query: 161 -TLLFVH 166
L FVH
Sbjct: 164 GRLAFVH 170
|
Length = 248 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 26/123 (21%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--------QNV 115
G VLD G G G+ L A+ + ++ G+ E E + V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGV-------ELDPEAAALARRRLALAGLAPRV 53
Query: 116 EIIVADISTFE--MEASYDRI-----YSIEMFEHMKN---YQNLLKKISKWMKED-TLLF 164
++V D + S+D + Y + N Y L + +K L+
Sbjct: 54 RVVVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
Query: 165 VHH 167
+
Sbjct: 114 ITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRV 109
M+ + E L+ G VL++G G G + +A+ + + I E E + R
Sbjct: 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
Query: 110 LELQNVEIIVAD-ISTFEMEASYDRIY 135
L L NV +IV D +E A YDRIY
Sbjct: 125 LGLDNVIVIVGDGTQGWEPLAPYDRIY 151
|
This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
++ G VLDVGCG G+ + +A++ ++ GI S+ +E+ NVE +
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75
Query: 120 ADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKI 153
D S+D + S + +H+++ L +I
Sbjct: 76 GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEI 110
|
Length = 241 |
| >gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase GidB | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEII 118
DG V+D+G G G + +A K+T + N K + F+ E L L NVEI+
Sbjct: 39 EYLDGKRVIDIGSGAGFPGIPLAIARPELKLTLLESNHK-KVAFLREVKAELGLNNVEIV 97
Query: 119 VADISTFEMEASYDRIYS------IEMFEHMKNYQNLLKKISKWM 157
F+ E +D I S + E NLLK ++
Sbjct: 98 NGRAEDFQHEEQFDIITSRALASLNVLLELT---LNLLKVGGYFL 139
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 181 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110
M+ + L+ G VL++G G G + +A+ ++ I + E L
Sbjct: 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL 117
Query: 111 ELQNVEIIVADIST-FEMEASYDRIY 135
+NV + D S + EA YDRI
Sbjct: 118 GYENVTVRHGDGSKGWPEEAPYDRII 143
|
Length = 209 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQC 107
M+ + CE L++G VL++G G G ++ I K + K+ I E ++
Sbjct: 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK--SGKVVTIERIPELAEKAKKTL 121
Query: 108 RVLELQNVEIIVADIST-FEMEASYDRIY 135
+ L NVE+IV D + +E A YDRIY
Sbjct: 122 KKLGYDNVEVIVGDGTLGYEENAPYDRIY 150
|
Length = 212 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126
V+D+GCG G+ + +A+++ + ITGI +S + + + L + AD+ T++
Sbjct: 34 VVDLGCGPGNSTELLARRWPDAVITGIDSS---PAMLAKAAQ--RLPDATFEEADLRTWK 88
Query: 127 MEASYDRIYSIEMF----EHMKNYQNLL 150
E D +++ + +H + L+
Sbjct: 89 PEQPTDLLFANAVLQWLPDHPELLPRLV 116
|
Length = 257 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRV 109
M + E L+ G VL++G G G L+ A+ + I + E
Sbjct: 61 MHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK 120
Query: 110 LELQNVEIIVAD-ISTFEMEASYDRIY 135
L L+NV ++V D + A YD I+
Sbjct: 121 LGLENVIVVVGDGRQGWPEFAPYDAIH 147
|
Length = 210 |
| >gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQK-EFIEEQCRVLELQNVEIIVADISTF 125
V DVG G G + +A + + K+T + S +K F+EE + L L+NV I+ A +
Sbjct: 52 VADVGSGAGFPGIPLAIAFPDKKLTLL-ESLLKKINFLEELKKELNLENVTIVHARAEEY 110
Query: 126 EMEASYDRIYS--IEMFEHMKNY-QNLLKKISKWM 157
+ E YD I S + + + LLK ++
Sbjct: 111 QHEEQYDVITSRAVASLNELTEWALPLLKPGGYFL 145
|
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 115
+ + G VLDVGCG G LS +A+ +N +TGI S+ E + + L +
Sbjct: 38 RKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN--VTGIDASEENIEVAKLHAKKDPLLKI 95
Query: 116 EIIVADISTF--EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
E + + S+D + +E+ EH+ + Q ++ ++ +K +LF
Sbjct: 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFF 147
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 13/145 (8%)
Query: 37 FSDASKTLED-------AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89
F+ A+KT + K +L L E+ VLD+GCG G L+ + +++ +
Sbjct: 2 FNKAAKTYDRHAKIQREMAKRLLALLKEKGIFIPAS-VLDIGCGTGYLTRALLKRFPQAE 60
Query: 90 ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQN 148
S Q + +NV+ I D + ++S+D I S + +
Sbjct: 61 FIANDISAGM----LAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQ 116
Query: 149 LLKKISKWMKEDTLLFVHHFCHKTF 173
L ++++ +K LL F T
Sbjct: 117 ALSELARVLKPGGLLAFSTFGPGTL 141
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.001
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
L + VLD+G G G YI +KY ++ IC +K + R + +E
Sbjct: 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDIC----EKMVNIAKLRNSDKNKIEFEA 105
Query: 120 ADISTFEM-EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169
DI + E ++D IYS + H+ + + L +K KW+K + +L + +C
Sbjct: 106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158
|
Length = 263 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.003
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 60 RLEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII 118
RL+ G VLD+G G G+++L +A++ + ++T + S + L L NVE +
Sbjct: 83 RLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVEFL 142
Query: 119 VAD 121
+D
Sbjct: 143 QSD 145
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQN 114
R + G VL+ G G G+L+ Y+A+ +T + + E L +
Sbjct: 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146
Query: 115 -VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
V + + D+ E D + F + + N+L+ +S +K
Sbjct: 147 RVTLKLGDVREGIDEEDVDAV-----FLDLPDPWNVLEHVSDALKPGG 189
|
Length = 256 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 100.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 100.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 100.0 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.95 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.9 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.89 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.88 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.88 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.87 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.86 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.84 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.83 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.83 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.82 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.8 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.79 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.79 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.79 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.79 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.78 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.78 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.76 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.76 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.76 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.75 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.75 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.75 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.74 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.73 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.72 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.72 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.72 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.71 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.71 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.7 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.7 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.7 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.69 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.69 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.69 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.69 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.69 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.68 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.68 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.66 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.66 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.66 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.66 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.66 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.65 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.65 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.64 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.64 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.64 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.64 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.64 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.64 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.64 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.64 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.63 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.63 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.63 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.63 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.63 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.62 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.62 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.62 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.61 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.61 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.61 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.6 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.6 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.6 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.59 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.59 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.58 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.58 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.58 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.58 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.57 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.57 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.57 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.57 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.57 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.56 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.56 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.56 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.56 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.55 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.55 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.55 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.54 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.53 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.53 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.53 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.52 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.51 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.5 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.5 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.5 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.5 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.49 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.47 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.47 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.46 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.45 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.45 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.45 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.43 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.43 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.43 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.42 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.42 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.4 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.4 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.4 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.39 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.39 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.38 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.38 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.38 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.37 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.36 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.36 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.36 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.35 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.35 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.34 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.34 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.33 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.31 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.3 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.3 | |
| PLN02476 | 278 | O-methyltransferase | 99.28 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.28 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.28 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.28 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.28 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.26 | |
| PLN02366 | 308 | spermidine synthase | 99.25 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.25 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.25 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.25 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.22 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.22 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.21 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.2 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 99.2 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.19 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.18 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.18 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.17 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.17 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.17 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.16 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.15 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.15 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.14 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.14 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.14 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.14 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.13 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.11 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.11 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.09 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.08 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.08 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.07 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.07 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.07 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.06 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.06 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 99.04 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 99.03 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.02 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.02 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.01 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.01 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 99.01 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.01 | |
| PLN02823 | 336 | spermine synthase | 98.98 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.96 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.95 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.94 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.93 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.93 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.92 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.91 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.9 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.9 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.89 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.88 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.86 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.85 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.85 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.85 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.84 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.84 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.83 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.82 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.81 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.8 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.79 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.76 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.74 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.73 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.68 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.67 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.67 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.64 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.63 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.61 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.59 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.57 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.56 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.56 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.54 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.52 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.51 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.46 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.45 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.41 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.4 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.38 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.33 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.33 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.33 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.31 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.31 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.31 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.21 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.2 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.2 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.19 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.18 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.17 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.16 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.15 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.14 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.1 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.05 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 98.04 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.03 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.02 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.98 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.89 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.88 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.8 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 97.71 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.62 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.58 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.58 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.58 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.56 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.52 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.5 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.48 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.47 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.41 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.35 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.27 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.25 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.25 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.21 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.17 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.16 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.13 | |
| PHA01634 | 156 | hypothetical protein | 97.07 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.02 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.97 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.94 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.84 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 96.83 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.83 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.79 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.69 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.68 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.61 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.48 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.43 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.42 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.33 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.31 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.24 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.22 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.21 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.06 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.03 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.0 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.99 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.89 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.84 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.8 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.8 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.72 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 95.62 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.57 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.55 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 95.52 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.27 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.27 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.18 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.15 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.14 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.08 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.05 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.86 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 94.71 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 94.65 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.58 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.49 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.46 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.42 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 94.26 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.13 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 94.09 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 94.06 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.01 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.85 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.69 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.55 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.51 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.42 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.37 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 93.36 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.36 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.3 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.12 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 92.93 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.82 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 92.79 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 92.78 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.45 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.34 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.24 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 92.06 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 92.05 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 92.02 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 91.93 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.84 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 91.81 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 91.79 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 91.66 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 91.58 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 91.52 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 91.44 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 91.38 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 91.22 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 91.17 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.08 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 90.95 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 90.92 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 90.87 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 90.67 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 90.63 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.52 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 90.12 | |
| cd05564 | 96 | PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic | 90.05 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.99 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 89.85 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 89.84 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 89.79 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 89.73 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 89.73 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 89.6 | |
| cd05565 | 99 | PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en | 89.46 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.34 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.23 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 89.16 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 89.1 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 89.06 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 88.87 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 88.76 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 88.73 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 88.64 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 88.59 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 88.58 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 88.21 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 88.1 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 88.03 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 87.97 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.92 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 87.86 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 87.79 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.78 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.65 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 87.59 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 87.55 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 87.54 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.46 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 87.42 | |
| PLN02494 | 477 | adenosylhomocysteinase | 87.34 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 87.16 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 87.15 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 87.09 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 87.06 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.01 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 86.92 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 86.67 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 86.54 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 86.51 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 86.35 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 86.3 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 86.3 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 86.29 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.26 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.24 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.13 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 85.64 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 85.53 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 85.42 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 85.38 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.05 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 84.74 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 84.61 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.45 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 84.15 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 83.98 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 83.89 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 83.65 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.62 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 83.59 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 83.55 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 83.47 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 83.22 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 83.1 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 83.01 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 82.65 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 82.57 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 82.55 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 82.14 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 81.75 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 81.73 | |
| PRK09590 | 104 | celB cellobiose phosphotransferase system IIB comp | 81.62 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.54 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 81.36 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 81.31 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 81.3 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 81.3 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 80.87 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 80.83 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 80.63 | |
| KOG2811 | 420 | consensus Uncharacterized conserved protein [Funct | 80.41 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.36 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 80.35 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 80.28 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 80.17 |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=320.45 Aligned_cols=268 Identities=32% Similarity=0.597 Sum_probs=239.8
Q ss_pred ccccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHH
Q 022810 3 IAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIA 82 (291)
Q Consensus 3 ~~~~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~ 82 (291)
........+++|||++++||+.|+++++.|||++|+.+..+++++|..+++.+++++.++||++|||||||+|.++++++
T Consensus 12 ~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA 91 (283)
T COG2230 12 SKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAA 91 (283)
T ss_pred cccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHH
Confidence 34567789999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhcccc
Q 022810 83 QKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKE 159 (291)
Q Consensus 83 ~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~p 159 (291)
+++ +++|+|+++|+++.+.+++++++.|+. ++++...|..++. ++||.|+|..+++|+ .+.+.+++.+.++|+|
T Consensus 92 ~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 92 EEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred HHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence 998 899999999999999999999999995 8999999999976 459999999999999 4599999999999999
Q ss_pred CeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHH
Q 022810 160 DTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238 (291)
Q Consensus 160 gG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~ 238 (291)
||.+++.++.....++. ....|+.+|+||+|.+|+...+.. ..+..-.+..|...+.||.+|++.|.++|.++..
T Consensus 169 ~G~~llh~I~~~~~~~~----~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~ 244 (283)
T COG2230 169 GGRMLLHSITGPDQEFR----RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRD 244 (283)
T ss_pred CceEEEEEecCCCcccc----cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHH
Confidence 99999998887665542 468899999999999998887776 3444444556778899999999999999999999
Q ss_pred hHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022810 239 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
++... ++ .++++.|+.|+.+|+.+|+.|.++ +.|+++.|
T Consensus 245 ~a~~~----~~----e~~~r~w~~yl~~~~~~Fr~~~~~---~~q~~~~k 283 (283)
T COG2230 245 EAIAL----YD----ERFYRMWELYLAACAAAFRAGYID---VFQFTLTK 283 (283)
T ss_pred HHHHH----hh----HHHHHHHHHHHHHHHHHhccCCce---EEEEEeeC
Confidence 88765 34 367999999999999999999865 88887754
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=328.18 Aligned_cols=265 Identities=36% Similarity=0.680 Sum_probs=206.8
Q ss_pred ccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022810 5 IQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 5 ~~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 84 (291)
.++++++++|||++++||..++|++|+|||++|+.+..+++++|.++++.+++++++++|.+|||||||+|.++..++++
T Consensus 4 ~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 4 KQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp ---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred chHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCe
Q 022810 85 YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 85 ~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG 161 (291)
+ +++|+|+++|+++.+.+++++++.|+ +++++..+|..+++ .+||.|++..+++|+ ++...+++++.++|||||
T Consensus 84 ~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 84 Y-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGG 160 (273)
T ss_dssp H---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTE
T ss_pred c-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCc
Confidence 8 89999999999999999999999998 47999999998865 489999999999999 678999999999999999
Q ss_pred eEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hh-cCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHh
Q 022810 162 LLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQ-DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS 239 (291)
Q Consensus 162 ~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~ 239 (291)
+++++.++....+..........|+.+|+||++.+|+...+.. .. .++.+ ..|...+.||.+|++.|+++|.++..+
T Consensus 161 ~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v-~~~~~~~~hY~~Tl~~W~~~f~~~~~~ 239 (273)
T PF02353_consen 161 RLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEV-EDVENLGRHYARTLRAWRENFDANREE 239 (273)
T ss_dssp EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EE-EEEEE-HHHHHHHHHHHHHHHHHTHHH
T ss_pred EEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEE-EEEEEcCcCHHHHHHHHHHHHHHHHHH
Confidence 9999988876655433222345899999999999999887665 33 45654 457777899999999999999999988
Q ss_pred HhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEE
Q 022810 240 IKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHF 284 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 284 (291)
+.++ |+ .++++.|+.|+.+|+++|++|.. ++.||
T Consensus 240 i~~~----~~----~~f~r~w~~yl~~~~~~F~~g~~---~~~Q~ 273 (273)
T PF02353_consen 240 IIAL----FD----EEFYRMWRYYLAYCAAGFRAGSI---DVFQI 273 (273)
T ss_dssp HHHH----SH----HHHHHHHHHHHHHHHHHHHTTSC---EEEEE
T ss_pred HHHh----cC----HHHHHHHHHHHHHHHHHHHCCCC---eEEeC
Confidence 8654 54 46899999999999999999885 57775
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=290.15 Aligned_cols=260 Identities=31% Similarity=0.655 Sum_probs=222.8
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC
Q 022810 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p 86 (291)
.+..+++|||.+++||..+++++|+|++++|.. ..++.+++..+++.+++++.+.++.+|||||||+|.++..+++.+
T Consensus 112 ~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~- 189 (383)
T PRK11705 112 AWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY- 189 (383)
T ss_pred HHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-
Confidence 456788999999999999999999999999974 478999999999999999999999999999999999999999876
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEE
Q 022810 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~ 164 (291)
+++|+|+|+|+++++.++++.. +. ++++...|+.+. +++||.|++..+++|+ .+...+++++.++|||||+++
T Consensus 190 g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 190 GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEE
Confidence 7899999999999999998874 33 588888898765 3689999999999998 456789999999999999999
Q ss_pred EEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhH
Q 022810 165 VHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIM 244 (291)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~~~~~~ 244 (291)
+..++..... .....|+.+|+||++.+|+...+....+....+..|...+.||.+|+..|.++|.++..++..
T Consensus 265 l~~i~~~~~~-----~~~~~~i~~yifp~g~lps~~~i~~~~~~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~-- 337 (383)
T PRK11705 265 LHTIGSNKTD-----TNVDPWINKYIFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD-- 337 (383)
T ss_pred EEEccCCCCC-----CCCCCCceeeecCCCcCCCHHHHHHHHHCCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 9887654322 124679999999999999877766554443445567778899999999999999998877653
Q ss_pred HhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022810 245 ESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
.|| ..+++.|+.|+.+|+++|+.|. +++.|+++.||
T Consensus 338 --~~~----~~~~r~w~~yl~~~~~~F~~~~---~~~~q~~~~~~ 373 (383)
T PRK11705 338 --NYS----ERFYRMWRYYLLSCAGAFRARD---IQLWQVVFSPR 373 (383)
T ss_pred --hCC----HHHHHHHHHHHHHHHHHHhCCC---ceEEEEEEEeC
Confidence 566 3689999999999999999988 56999999995
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-25 Score=194.78 Aligned_cols=163 Identities=22% Similarity=0.401 Sum_probs=146.1
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEEcCCcchHHH
Q 022810 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDA--SKTLEDAEKAMLELYCERSRL-----EDGHTVLDVGCGWGSLSL 79 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~ 79 (291)
....+.+|||..+++|+.++++.++. ++|... .....+++.++++.+++.+.+ .++.+|||||||+|.++.
T Consensus 57 ~~~~i~~~Yd~~~~~~e~~~g~~~h~--g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~ 134 (340)
T PLN02244 57 LKEGIAEFYDESSGVWEDVWGEHMHH--GYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSR 134 (340)
T ss_pred HHHHHHHHHccchHHHHHHhCCccee--eccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHH
Confidence 45688999999999999999987765 888764 467889999999999998887 678899999999999999
Q ss_pred HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhcc
Q 022810 80 YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 80 ~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 157 (291)
.+++++ +.+|+|+|+|+.+++.+++++...++ ++++++++|+.+.+.+ ++||+|++..+++|+++...+++++.++|
T Consensus 135 ~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL 213 (340)
T PLN02244 135 YLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVA 213 (340)
T ss_pred HHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHc
Confidence 999887 78999999999999999999888877 4799999999988766 89999999999999999999999999999
Q ss_pred ccCeeEEEEeeccCC
Q 022810 158 KEDTLLFVHHFCHKT 172 (291)
Q Consensus 158 ~pgG~l~i~~~~~~~ 172 (291)
||||.+++.++.+..
T Consensus 214 kpGG~lvi~~~~~~~ 228 (340)
T PLN02244 214 APGGRIIIVTWCHRD 228 (340)
T ss_pred CCCcEEEEEEecccc
Confidence 999999998876543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-24 Score=170.21 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=156.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (291)
...++..+...+..+|.|||||+|..+..|++++|++.++|+|.|++|++.|+++ +.+++|..+|+.++.++.+.
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~~~~ 93 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPEQPT 93 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCCCcc
Confidence 3456677788888999999999999999999999999999999999999988654 34799999999999887899
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCccccccc---CCccchhhhhcc---CCCCCCcHHHHH-H
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED---TNDDDWITKYFF---TGGTMPSANLLL-Y 204 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~---~~~~~w~~~~~~---~~~~~~~~~~~~-~ 204 (291)
|++++|.++++++|...+|.++...|.|||+|.++.|+....+.+... .....|-...-- ....+++....- .
T Consensus 94 dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~l 173 (257)
T COG4106 94 DLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYEL 173 (257)
T ss_pred chhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999988766655321 223345444311 123455544333 3
Q ss_pred hhcCcEEEEeeecCCCcH---HHHHHHHHH---------HHHhcH-----HhHhhhHHhccC-cchhHHHHHHHHHHHHH
Q 022810 205 FQDDVSVVDHWLVNGKHY---AQTSEEWLK---------RMDNNL-----ASIKPIMESTYG-KDQAVKWTVYWRTFFIA 266 (291)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~---~~t~~~w~~---------~l~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 266 (291)
+......++.|++...|. ...+-+|.+ .|.+.. ..+..++.+.|+ +.+|++.+++.|.|++|
T Consensus 174 La~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA 253 (257)
T COG4106 174 LAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVA 253 (257)
T ss_pred hCcccceeeeeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEE
Confidence 344456688898876653 223344443 332221 224556666776 66777888888777765
Q ss_pred H
Q 022810 267 V 267 (291)
Q Consensus 267 ~ 267 (291)
.
T Consensus 254 ~ 254 (257)
T COG4106 254 T 254 (257)
T ss_pred e
Confidence 4
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-22 Score=164.75 Aligned_cols=202 Identities=19% Similarity=0.276 Sum_probs=148.5
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 143 (291)
.+|||||||+|..+..+++.+|+.+|+|+|+|+.+++.+++++...++ ++++++.+|+...+.+++||+|++..+++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 379999999999999999998788999999999999999999988777 4789999999766555789999999999999
Q ss_pred ccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHH-HHh-hcCcEEEEeeecCCCc
Q 022810 144 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLL-LYF-QDDVSVVDHWLVNGKH 221 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 221 (291)
++...+++++.++|+|||.+++..+....... ....+... ..++.... ..+ ..++.+.+.. ..+.+
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~------~~~s~~~~~~~l~~~Gf~~~~~~-~~~~~ 148 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSA-----IEHEETTS------YLVTREEWAELLARNNLRVVEGV-DASLE 148 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc-----cccccccc------ccCCHHHHHHHHHHCCCeEEEeE-ECcHh
Confidence 99999999999999999999998764322110 01111111 12333322 222 3566666543 33567
Q ss_pred HHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecCC
Q 022810 222 YAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME 291 (291)
Q Consensus 222 ~~~t~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 291 (291)
|.+++ |...|.++..++... .++ ....+.|.. +..++++|+.|. ++.+|++++|+++
T Consensus 149 ~~~~l--~~~~f~~~~~~~~~~---~~~----~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~k~~~ 205 (224)
T smart00828 149 IANFL--YDPGFEDNLERLYQD---DLD----EVTKRHFRG-IANLGKLLEKGL---ASYALLIVQKDEF 205 (224)
T ss_pred Hhhhc--cChhHHHHHHHhccc---cch----HHHHHHHhh-HHHHHHHHHhch---HhhEEEEEecccc
Confidence 77655 778887777666543 233 245677754 456666699977 6799999999853
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=160.04 Aligned_cols=246 Identities=16% Similarity=0.279 Sum_probs=162.7
Q ss_pred HHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE
Q 022810 10 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89 (291)
Q Consensus 10 ~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~ 89 (291)
+.++|-+..-..|+..++....-. .. ......+++.+.+.++.+|||||||+|..+..+++.+ +.+
T Consensus 12 ~~~~y~~~~~~~~e~~~g~~~~~~--------gg-----~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~ 77 (263)
T PTZ00098 12 ENNQYSDEGIKAYEFIFGEDYISS--------GG-----IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAH 77 (263)
T ss_pred hccccccccchhHHHHhCCCCCCC--------Cc-----hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCE
Confidence 344555666788888877532211 11 2234567778888999999999999999999998765 789
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEE
Q 022810 90 ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+|+|+.+++.++++... .+++.++++|+...+.+ ++||+|++..+++|++ +...+++++.++|||||.+++.
T Consensus 78 v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999987654 24799999999877665 7899999999888875 7889999999999999999998
Q ss_pred eeccCCcccccccCCccchhhhhcc-CCCCCCc-HHHHHHh-hcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhh
Q 022810 167 HFCHKTFAYHFEDTNDDDWITKYFF-TGGTMPS-ANLLLYF-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~~~~~ 243 (291)
.+....... . ...+ ..++. ....+.+ .+....+ ..++..++.... ...+.+.+..-++.+.++..++.
T Consensus 156 d~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~-- 226 (263)
T PTZ00098 156 DYCADKIEN-W----DEEF-KAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDI-SDYWLELLQVELKKLEEKKEEFL-- 226 (263)
T ss_pred EeccccccC-c----HHHH-HHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeC-cHHHHHHHHHHHHHHHHhHHHHH--
Confidence 775543211 0 0011 11110 0112223 2333333 346665554332 33344444455555555555543
Q ss_pred HHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022810 244 MESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
+.+|++..+.+...|...+-++.+ |. +.||+.+ ++||
T Consensus 227 --~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~wg~~~--~~~~ 263 (263)
T PTZ00098 227 --KLYSEKEYNSLKDGWTRKIKDTKR----KL-QKWGYFK--AQKM 263 (263)
T ss_pred --HhcCHHHHHHHHHHHHHHHHHhhc----cc-cccceEe--ecCC
Confidence 457776666677777666655553 44 4588876 5553
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=162.00 Aligned_cols=151 Identities=20% Similarity=0.345 Sum_probs=125.9
Q ss_pred hhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC
Q 022810 8 DKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87 (291)
Q Consensus 8 ~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~ 87 (291)
+..++..||..+..|+.. +.-+.+ + ++ ..+-+.+++.+...+|.+|||+|||||..+..+++..+.
T Consensus 10 ~~~v~~vF~~ia~~YD~~-n~~~S~--g--------~~---~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~ 75 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLM-NDLMSF--G--------LH---RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGT 75 (238)
T ss_pred HHHHHHHHHhhHHHHHhh-cccccC--c--------ch---HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCC
Confidence 457777777777777643 221222 1 11 233455666666778999999999999999999999877
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 88 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+++|+|+.|++.+++++.+.+..+++|+.+|++.+|++ ++||+|.+...+.+++|.+.+|+++.|+|||||++++.
T Consensus 76 g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 76 GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 89999999999999999999988876699999999999998 99999999999999999999999999999999999888
Q ss_pred eeccCC
Q 022810 167 HFCHKT 172 (291)
Q Consensus 167 ~~~~~~ 172 (291)
.+..+.
T Consensus 156 e~~~p~ 161 (238)
T COG2226 156 EFSKPD 161 (238)
T ss_pred EcCCCC
Confidence 776653
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=168.23 Aligned_cols=217 Identities=20% Similarity=0.348 Sum_probs=151.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
.+.+++.+.+.++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++..... .++++.++|+...+.+ ++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCC
Confidence 4556666667788999999999999999999876 7899999999999999988775333 3799999999887655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccC-CCCCCcHHHHHHh--hc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFT-GGTMPSANLLLYF--QD 207 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~--~~ 207 (291)
||+|+|..+++|++++..++++++++|||||.+++.++....... ... ...++.. +..+++......+ ..
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~-~~~~~~~~g~~~~~~~~~~~~l~~a 405 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP------SPE-FAEYIKQRGYDLHDVQAYGQMLKDA 405 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cHH-HHHHHHhcCCCCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999998876543221 111 1112211 2234443333332 34
Q ss_pred CcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q 022810 208 DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFR 287 (291)
Q Consensus 208 ~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 287 (291)
++..+.. ..-+.+|.+++..|...+.++..++.. .++++....+...|. ...+.+..++.. ||. ++.|
T Consensus 406 GF~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~----~~~~~~~~~~~~-wg~--~~a~ 473 (475)
T PLN02336 406 GFDDVIA-EDRTDQFLQVLQRELDAVEKEKDEFIS----DFSEEDYNDIVGGWK----AKLVRSSSGEQK-WGL--FIAK 473 (475)
T ss_pred CCeeeee-ecchHHHHHHHHHHHHHHHhCHHHHHH----hcCHHHHHHHHHhHH----HHHhhhcCCcee-eEE--EEEe
Confidence 6665543 333467899999999998877766643 466544444444553 334444454422 544 4566
Q ss_pred ec
Q 022810 288 KK 289 (291)
Q Consensus 288 ~~ 289 (291)
|.
T Consensus 474 k~ 475 (475)
T PLN02336 474 KK 475 (475)
T ss_pred cC
Confidence 63
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=163.45 Aligned_cols=154 Identities=17% Similarity=0.276 Sum_probs=92.0
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
..+..++..||..+..|+.. +.-+.+ +. +...+ ..+++.+...++.+|||+|||+|..+..+++..
T Consensus 4 ~k~~~v~~~Fd~ia~~YD~~-n~~ls~--g~--------~~~wr---~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~ 69 (233)
T PF01209_consen 4 AKEQYVRKMFDRIAPRYDRM-NDLLSF--GQ--------DRRWR---RKLIKLLGLRPGDRVLDVACGTGDVTRELARRV 69 (233)
T ss_dssp -----------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGS
T ss_pred cHHHHHHHHHHHHHHHhCCC-ccccCC--cH--------HHHHH---HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHC
Confidence 34556777777777777643 211221 11 11112 234444566788999999999999999998875
Q ss_pred -CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeE
Q 022810 86 -SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 86 -p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 163 (291)
|..+|+|+|+|+.|++.|+++....+..+++++++|+++++.+ ++||+|++...++.++|....+++++|+|||||++
T Consensus 70 ~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 70 GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRL 149 (233)
T ss_dssp S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEE
T ss_pred CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEE
Confidence 4679999999999999999999988777999999999999887 89999999999999999999999999999999999
Q ss_pred EEEeeccCCc
Q 022810 164 FVHHFCHKTF 173 (291)
Q Consensus 164 ~i~~~~~~~~ 173 (291)
++.+++.+..
T Consensus 150 ~ile~~~p~~ 159 (233)
T PF01209_consen 150 VILEFSKPRN 159 (233)
T ss_dssp EEEEEEB-SS
T ss_pred EEeeccCCCC
Confidence 9988876543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-21 Score=155.02 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.++.+|||+|||.|.++..+|+. |++|+|+|+++.+++.|+..+.+.++ ++.+.+..++++... ++||+|+|..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999998 89999999999999999999999888 688888888887765 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 174 (291)
+|++++..+++.+.+++||||.+++++++....+
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 9999999999999999999999999999865443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=153.19 Aligned_cols=153 Identities=16% Similarity=0.239 Sum_probs=117.6
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
...+.++.+||..+..|+..-+. +.. + ...... ..+++.+.+.++.+|||+|||+|.++..++++.
T Consensus 30 ~~~~~v~~~f~~~A~~YD~~~~~-~s~--g--------~~~~~r---~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~ 95 (261)
T PLN02233 30 KCANERQALFNRIAPVYDNLNDL-LSL--G--------QHRIWK---RMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKV 95 (261)
T ss_pred hhHHHHHHHHHHhhhHHHHhhhh-hcC--C--------hhHHHH---HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHh
Confidence 44566778888888888743211 111 0 111111 223345567788999999999999999998874
Q ss_pred -CCCEEEEEcCCHHHHHHHHHHHHH---hCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccC
Q 022810 86 -SNCKITGICNSKTQKEFIEEQCRV---LELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 86 -p~~~v~~vD~s~~~~~~a~~~~~~---~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 160 (291)
|..+|+|+|+|++|++.|+++... ...++++++++|+++++.+ ++||+|+++.++++++++..+++++.++||||
T Consensus 96 ~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 96 GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175 (261)
T ss_pred CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence 457999999999999999876542 2235799999999998877 78999999999999999999999999999999
Q ss_pred eeEEEEeeccCC
Q 022810 161 TLLFVHHFCHKT 172 (291)
Q Consensus 161 G~l~i~~~~~~~ 172 (291)
|.+++.++..+.
T Consensus 176 G~l~i~d~~~~~ 187 (261)
T PLN02233 176 SRVSILDFNKST 187 (261)
T ss_pred cEEEEEECCCCC
Confidence 999998876543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-20 Score=136.22 Aligned_cols=105 Identities=21% Similarity=0.398 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccc-cCCccCCCccEEEEcc-c
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI-STFEMEASYDRIYSIE-M 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~-~~~~~~~~~D~v~~~~-~ 139 (291)
|+.+|||||||+|.++..+++++|+.+|+|+|+|+.+++.+++++...+. ++++++++|+ ......++||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 57899999999999999999977899999999999999999999966555 6899999999 4444447899999999 4
Q ss_pred cccc---ccHHHHHHHHHhccccCeeEEEEe
Q 022810 140 FEHM---KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++++ ++...+++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4433 456889999999999999999865
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=141.25 Aligned_cols=108 Identities=28% Similarity=0.496 Sum_probs=98.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~-~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~v~~~~ 138 (291)
+++.+|||+|||+|.++..+++ ..|+.+++|+|+|+.+++.|+++++..+.++++++++|+.+++ .+++||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 4578999999999999999994 5678999999999999999999999999888999999999966 337999999999
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++++.+...+++++.+.|+++|.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998775
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-19 Score=150.77 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.....+++.+...++.+|||||||+|.++..+++++|+.+|+|+|+|+.+++.|++. +++++++|+.++...+
T Consensus 16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~ 88 (255)
T PRK14103 16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKP 88 (255)
T ss_pred CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCC
Confidence 345567777887888999999999999999999998889999999999999988652 5789999998775448
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|+++.++++++++..+++++.++|||||.+++..+..
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 99999999999999999999999999999999999976543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=143.93 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=104.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
..+++.+.+.++.+|||+|||+|..+..+++.. |+.+|+|+|+++.+++.++++....+.++++++++|+.+.+.+ ++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 456667778889999999999999999999875 5679999999999999999998877777899999999887655 79
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|++..+++++++...+++++.++|+|||.+++.+...
T Consensus 115 fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 9999999999999999999999999999999998876544
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-18 Score=143.84 Aligned_cols=115 Identities=19% Similarity=0.309 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.....++..+...++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++. +++.++.+|+..+...+
T Consensus 18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~ 92 (258)
T PRK01683 18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQ 92 (258)
T ss_pred cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCC
Confidence 3455667777778889999999999999999999988899999999999999988753 36889999998765557
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+||+|+++.+++++++...+++++.++|+|||.+++..+.
T Consensus 93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 93 ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 9999999999999999999999999999999999997654
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=141.36 Aligned_cols=110 Identities=21% Similarity=0.337 Sum_probs=95.2
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++.++++...|+.+.+.+++||+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 99 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFI 99 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEE
Confidence 344445567789999999999999999987 789999999999999999999888887799999999887656789999
Q ss_pred EEcccccccc--cHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++.++++++ +...+++++.++|+|||++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998874 5788999999999999996553
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=150.72 Aligned_cols=107 Identities=20% Similarity=0.336 Sum_probs=95.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
.++.+|||||||+|.++..+++. +.+|+|||+++++++.|++++...+. .+++++++|+++++.. ++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 35779999999999999999875 88999999999999999988765544 4799999999887655 78999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++|+.++..+++++.++|||||.+++.+++.
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9999999999999999999999999988764
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.8e-18 Score=135.58 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.+++.+.-.-.++++.+|||+|||+|..+..+++..|+.+|+++|+++.+++.|+++++..++++++++++|+.+....+
T Consensus 32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~ 111 (187)
T PRK00107 32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEE 111 (187)
T ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCC
Confidence 34444433223445889999999999999999988888999999999999999999999998877999999998876557
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+||+|+++. +.+...+++.+.+.|+|||++++...
T Consensus 112 ~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 112 KFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred CccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 899999975 35678899999999999999988754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=125.17 Aligned_cols=94 Identities=23% Similarity=0.421 Sum_probs=82.8
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccH
Q 022810 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 146 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~ 146 (291)
||+|||+|..+..++++ ++.+|+++|+++.+++.++++.... ++.+..+|+.+++.+ ++||+|++..+++++++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999988 6899999999999999998876543 466999999999877 999999999999999999
Q ss_pred HHHHHHHHhccccCeeEEE
Q 022810 147 QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 147 ~~~l~~~~~~L~pgG~l~i 165 (291)
..+++++.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-18 Score=144.62 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=101.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-c-C
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-M-E 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~-~-~ 128 (291)
+..+++.+. .++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++....++ ++++++++|+.++. . +
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 455666665 45679999999999999999987 78999999999999999999988876 47999999998764 2 3
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++||+|++..++++++++..+++++.++|||||++++..++..
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 7899999999999999999999999999999999988766543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-18 Score=143.23 Aligned_cols=140 Identities=14% Similarity=0.224 Sum_probs=112.4
Q ss_pred hhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC
Q 022810 8 DKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87 (291)
Q Consensus 8 ~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~ 87 (291)
+..++..|+.....|.. ....+....+.+++.+...++.+|||+|||+|.++..+++. +
T Consensus 6 k~~i~~~F~~aa~~Y~~-------------------~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~ 64 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQ-------------------HAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--G 64 (251)
T ss_pred HHHHHHHHHHHHHhHhH-------------------HHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--C
Confidence 45666667665555542 12334566667777776666789999999999999998875 7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 88 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+++|+|+.+++.++++.. ...++++|++.++.+ ++||+|+++.++++++++..++.++.++|+|||.+++.
T Consensus 65 ~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 65 SQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 899999999999998877532 356889999887766 78999999999999999999999999999999999998
Q ss_pred eeccCCc
Q 022810 167 HFCHKTF 173 (291)
Q Consensus 167 ~~~~~~~ 173 (291)
++...+.
T Consensus 140 ~~~~~~~ 146 (251)
T PRK10258 140 TLVQGSL 146 (251)
T ss_pred eCCCCch
Confidence 8876543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=131.03 Aligned_cols=130 Identities=23% Similarity=0.368 Sum_probs=104.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC
Q 022810 33 SCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 112 (291)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~ 112 (291)
..|.|+ ...++....-+++.+... ++.+|||+|||+|.++..+++..|..+|+++|+++.+++.+++++..+++
T Consensus 7 ~~gvFs--~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 7 HPGVFS--PPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp ETTSTT--TTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred CCCeeC--CCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 447775 345666656555555443 67799999999999999999998887899999999999999999999998
Q ss_pred CCeEEEEccccCCccCCCccEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEee
Q 022810 113 QNVEIIVADISTFEMEASYDRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 ~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++++++..|+.+...+++||+|+++++++.-.+ ...+++.+.+.|+|||.+++...
T Consensus 81 ~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 81 ENVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 669999999987554589999999999866543 57899999999999999987544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=142.71 Aligned_cols=106 Identities=28% Similarity=0.458 Sum_probs=92.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-C-----CeEEEEccccCCccCCCccEEEEc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-----NVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~-----~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
|++|||+|||+|.++..|++. +++|+|+|+++.+++.|++....... . ++++.+.|++... ++||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeH
Confidence 488999999999999999988 89999999999999999998554443 1 3667777777765 569999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
.+++|+.|++.++..+.+.|||||.+++++..+.-.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~l 201 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTIL 201 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHH
Confidence 999999999999999999999999999998876543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=136.74 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=92.0
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++...++ ++.+...|+...+.+++||+|+
T Consensus 23 ~~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~ 99 (195)
T TIGR00477 23 REAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIF 99 (195)
T ss_pred HHHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEE
Confidence 34444556779999999999999999986 78999999999999999998888777 4788888887655557899999
Q ss_pred Eccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++.+++++ .+...+++++.++|+|||++++..
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 100 STVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred EecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99999888 456789999999999999966543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=131.58 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+++.+...++.++||+|||.|..+.+|+++ |..|+++|.|+..++.+++.+...++ +|+..+.|+.+...++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEE
Confidence 344455556789999999999999999998 99999999999999999999988888 599999999988777889999
Q ss_pred EEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 135 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++..+++++ +..+.+++.+.+.++|||++++.+..
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 998888888 55678999999999999998886553
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=131.47 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=88.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
++.+|||+|||+|.++..++...|+.+|+++|.|+.+++.+++++++.++++++++++|+.++...++||+|+++. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-L-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-h--
Confidence 4789999999999999999988778899999999999999999998888878999999999875447999999976 3
Q ss_pred cccHHHHHHHHHhccccCeeEEEEe
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+...+++.+.++|+|||.+++..
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456678889999999999998753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=145.79 Aligned_cols=115 Identities=22% Similarity=0.154 Sum_probs=97.3
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
+.+.+++.+.+ .++.+|||||||+|..+..+++..++.+|+++|+|+.+++.++++.. ..+++++.+|+++.+.+
T Consensus 100 ~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 100 MRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPT 176 (340)
T ss_pred HHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCC
Confidence 33445554444 46789999999999999999988777899999999999999988754 23688999999987765
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++||+|+++.+++++++...+++++.++|+|||.+++..+
T Consensus 177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7899999999999999999999999999999999988654
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=133.28 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=106.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC------CEEEEEcCCHHHHHHHHHHHHHhCC-C--CeEEEEcccc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN------CKITGICNSKTQKEFIEEQCRVLEL-Q--NVEIIVADIS 123 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~------~~v~~vD~s~~~~~~a~~~~~~~~~-~--~i~~~~~d~~ 123 (291)
+.++.++...+++++||++||||.++..+.+..+. .+|+++|+|++|++.+++++.+.++ + ++.|+++|++
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 44556777788999999999999999999887654 7899999999999999999988777 2 3899999999
Q ss_pred CCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 124 ~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+++++ .+||..++...+..+.++++.+++++|+|||||++.+-.+....
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 99998 99999999999999999999999999999999999877665543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=120.40 Aligned_cols=115 Identities=20% Similarity=0.275 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-c-C
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-M-E 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-~-~ 128 (291)
....+++.+...++.+|||+|||+|..+..+++..|+.+|+++|+++.+++.+++++...+.++++++.+|+.... . .
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 3445666677777889999999999999999998878899999999999999999998887778999999877532 1 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+||.|++..... ....+++.+.+.|+|||.+++...
T Consensus 87 ~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 87 PEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 6899999976543 446899999999999999988653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=136.02 Aligned_cols=107 Identities=23% Similarity=0.354 Sum_probs=93.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHH--CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~--~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
..++.+|||+|||+|..+..+++. .|+.+++|+|+|+.|++.|++++...+. .+++++++|+.+.+. ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 356789999999999999998874 4789999999999999999999987766 379999999988755 458999999
Q ss_pred ccccccc--cHHHHHHHHHhccccCeeEEEEee
Q 022810 138 EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++++++ +...+++++.+.|||||.+++.+.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999985 346799999999999999999764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=138.47 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccCC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-~~~i~~~~~d~~~~~~~~ 129 (291)
+...++..+...++.+|||+|||+|.++..++... ...|+|+|+|+.++..++...+..+ ..++.+..+++++++...
T Consensus 109 ~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 109 KWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 34567777777788999999999999999988774 3479999999999876544333222 236888889998876557
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|+|..+++|++++..++++++++|+|||.|++.+...
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 89999999999999999999999999999999999987643
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=139.86 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=96.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
.+.+...++..++.+|||||||+|.++..++... ...|+|+|+|+.++..++......+. .++.++.+|+++++.+++
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~ 189 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKA 189 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCC
Confidence 3445555655578899999999999999999875 34699999999988765544333322 379999999998876688
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|+|..+++|+.++..+++++++.|+|||.+++.+...
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 9999999999999999999999999999999999976543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-18 Score=125.20 Aligned_cols=96 Identities=24% Similarity=0.416 Sum_probs=67.6
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---ccCCCccEEEEcccccccc
Q 022810 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~---~~~~~~D~v~~~~~l~~~~ 144 (291)
||||||+|.++..+++.+|..+++++|+|+.+++.++++.......+......+..+. ..+++||+|++..+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999988999999999999999999888887654444444443332 2225999999999999999
Q ss_pred cHHHHHHHHHhccccCeeE
Q 022810 145 NYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 145 ~~~~~l~~~~~~L~pgG~l 163 (291)
+...+++++.++|+|||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=135.86 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=98.1
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~ 136 (291)
..+.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|+++....+.++++++.+|+++++.+ ++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 346789999999999999888777664 4468999999999999999998888877899999999987765 78999999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.++++.++...+++++.++|||||++++....
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 999999999999999999999999999997654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=137.01 Aligned_cols=103 Identities=21% Similarity=0.330 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+.....+++||+|++..+++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhh
Confidence 34569999999999999999986 78999999999999999999988888 7899999988765568899999999998
Q ss_pred ccc--cHHHHHHHHHhccccCeeEEEEe
Q 022810 142 HMK--NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~~--~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+++ +...+++++.++|+|||++++..
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 884 67889999999999999977644
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=133.03 Aligned_cols=120 Identities=20% Similarity=0.293 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCC---CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022810 48 EKAMLELYCERSRL---EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 48 ~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~ 124 (291)
+......+++.+.. ..+.+|||+|||+|.++..+++..|..+++++|+++.+++.++++.. +++.++.+|+.+
T Consensus 16 q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~ 91 (240)
T TIGR02072 16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEK 91 (240)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhh
Confidence 33444444444332 34579999999999999999999888899999999999988877653 368899999998
Q ss_pred CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 125 FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 125 ~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.+.+ ++||+|+++.++++..++..+++++.++|+|||.+++..+...
T Consensus 92 ~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 92 LPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred CCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 7755 7899999999999999999999999999999999999876554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-16 Score=130.55 Aligned_cols=118 Identities=22% Similarity=0.309 Sum_probs=101.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
.+.+++.+.+.++.+|||+|||+|..+..+++.+ |..+++++|+++.+++.++++... ...++.+..+|+...+.. +
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~ 86 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDG 86 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCC
Confidence 3455667788889999999999999999999886 678999999999999999887322 224799999999876655 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|++..+++++.++..+++++.++|+|||.+++..+..
T Consensus 87 ~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 87 SFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred CceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 89999999999999999999999999999999999887653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=129.04 Aligned_cols=151 Identities=17% Similarity=0.293 Sum_probs=115.8
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
..++.+..+|+...+-|+.+- ....+ +. .......++..+...++.+|||+|||+|..+..+++..
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~-~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~ 73 (239)
T PRK00216 8 EKQEKVAEMFDSIAPKYDLMN-DLLSF--GL-----------HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAV 73 (239)
T ss_pred cchHHHHHHHHHhhhhHHHHH-HHHhc--CC-----------cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHc
Confidence 445567777777666665321 10111 00 01233344555556678899999999999999999887
Q ss_pred C-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCee
Q 022810 86 S-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 86 p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 162 (291)
| ..+++++|+++.+++.+++++...+. .++.++.+|+.+.+.+ ++||+|++..++++..+...+++.+.++|+|||.
T Consensus 74 ~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~ 153 (239)
T PRK00216 74 GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGR 153 (239)
T ss_pred CCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcE
Confidence 5 58999999999999999998876544 3689999999887655 7899999999999999999999999999999999
Q ss_pred EEEEeecc
Q 022810 163 LFVHHFCH 170 (291)
Q Consensus 163 l~i~~~~~ 170 (291)
+++.....
T Consensus 154 li~~~~~~ 161 (239)
T PRK00216 154 LVILEFSK 161 (239)
T ss_pred EEEEEecC
Confidence 98876543
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.7e-17 Score=117.37 Aligned_cols=94 Identities=19% Similarity=0.430 Sum_probs=79.5
Q ss_pred EEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc-cccc
Q 022810 67 VLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-EMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~---p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~-~~l~ 141 (291)
|||+|||+|..+..+++.+ |..+++|+|+|+.+++.++++....+. +++++++|+.+++.. ++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999886 347999999999999999999988776 899999999997755 799999995 4588
Q ss_pred ccc--cHHHHHHHHHhccccCe
Q 022810 142 HMK--NYQNLLKKISKWMKEDT 161 (291)
Q Consensus 142 ~~~--~~~~~l~~~~~~L~pgG 161 (291)
|+. +...+++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 884 56789999999999998
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=124.42 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
..++..+...++.+|||+|||+|.++..+++.+|+.+|+++|+++.+++.+++++...++.+++++.+|... ..+++||
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D 99 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKAD 99 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCC
Confidence 344566677788999999999999999999988888999999999999999999988877779999998753 2346899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|++..... ....+++.+.+.|+|||++++....
T Consensus 100 ~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 100 AIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 999987653 3567899999999999999886543
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-16 Score=131.94 Aligned_cols=107 Identities=23% Similarity=0.308 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~ 138 (291)
.++.+|||+|||+|..+..+++.+ |+.+++|+|+|+.+++.|++++...+. .+++++++|+.+.+.+ .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 467899999999999999999864 688999999999999999999877654 3789999999887654 689999999
Q ss_pred cccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++++++ +...+++++.++|+|||.+++..+.
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 999984 4678999999999999999998654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=124.68 Aligned_cols=99 Identities=28% Similarity=0.427 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
..++.+|||||||.|.++..+++. +.+++|+|+++.+++. .++.....+......+ ++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 567889999999999999999776 6799999999998876 1344444433343333 89999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++|++++..+++++.++|||||++++.++...
T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999999999999999988653
|
... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-16 Score=136.77 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=101.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-
Q 022810 34 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL- 112 (291)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~- 112 (291)
.+.|+.. .++...+ .+++.+....+.+|||+|||+|.++..+++++|..+|+++|.|+.+++.+++++..++.
T Consensus 205 ~gVFs~~--~LD~Gtr----llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~ 278 (378)
T PRK15001 205 ANVFSRT--GLDIGAR----FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 278 (378)
T ss_pred CCccCCC--CcChHHH----HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 4777743 4554433 34455554445699999999999999999999999999999999999999999987764
Q ss_pred --CCeEEEEccccCCccCCCccEEEEcccccccc-----cHHHHHHHHHhccccCeeEEEEe
Q 022810 113 --QNVEIIVADISTFEMEASYDRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 --~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+++++..|+.....+.+||+|+|+++++... ...++++.+.++|+|||.+++..
T Consensus 279 ~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 279 ALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 36889988886543336899999999987542 24578999999999999999874
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-16 Score=128.12 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cCCc--cC-CCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFE--ME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~-~~~~--~~-~~~D~v~~~~ 138 (291)
++.+|||+|||+|..+..+++..|+.+|+|+|+|+.+++.+++++...+.+++.++++|+ +.++ .+ ++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 678999999999999999999888889999999999999999999888777899999999 6554 33 7899999976
Q ss_pred cccccc--------cHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+..+.. ....+++++.++|+|||.+++.+..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 543321 1467999999999999999997654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=131.31 Aligned_cols=133 Identities=20% Similarity=0.276 Sum_probs=100.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHCC-----CCEEEEEcCCHHHHHHHHH
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~p-----~~~v~~vD~s~~~~~~a~~ 105 (291)
.+|-.....++......+..+++.....++.+|+|+|||+|. ++..+++..+ +.+|+|+|+|+.+++.|++
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 444445556666666666666554444566899999999996 5666666543 4689999999999999987
Q ss_pred HHHH----hC----------------------C-CCeEEEEccccCCccC-CCccEEEEcccccccc--cHHHHHHHHHh
Q 022810 106 QCRV----LE----------------------L-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISK 155 (291)
Q Consensus 106 ~~~~----~~----------------------~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~ 155 (291)
..-. .+ + ++++|.++|+.+.+.+ ++||+|+|.+++++++ +...+++++.+
T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~ 230 (264)
T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAE 230 (264)
T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHH
Confidence 5310 00 1 2689999999987664 8999999999999995 45689999999
Q ss_pred ccccCeeEEEEe
Q 022810 156 WMKEDTLLFVHH 167 (291)
Q Consensus 156 ~L~pgG~l~i~~ 167 (291)
.|+|||++++..
T Consensus 231 ~L~pGG~L~lg~ 242 (264)
T smart00138 231 ALKPGGYLFLGH 242 (264)
T ss_pred HhCCCeEEEEEC
Confidence 999999999853
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=126.50 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
++.+|||+|||+|.++..+++.. +.+|+|+|+|++|++.|++. ..++++|+++++.+ ++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 46799999999999999999886 57999999999999998753 23578999988876 8999999999999
Q ss_pred ccccHHHHHHHHHhccccC
Q 022810 142 HMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pg 160 (291)
+++++..+++++.++|||.
T Consensus 122 ~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999994
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=123.17 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~ 127 (291)
.+...+++.+...++.+|||+|||+|..+..+++..+ +.+|+++|+++.+++.+++++...+.. +++++.+|+.+...
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 3456677777788889999999999999999988753 469999999999999999999888874 58999999987543
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .+||+|++..++.+++ +++.+.|+|||++++..
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 3 7899999998876554 46788999999998854
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=124.65 Aligned_cols=115 Identities=24% Similarity=0.353 Sum_probs=98.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
..++..+...++.+|||+|||+|..+..+++..|. .+++++|+++.+++.++++.. ...++.++.+|+.+.+.+ ++
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCc
Confidence 34455555567899999999999999999988754 699999999999999988765 224789999999887655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|++..++++.++...+++++.+.|+|||++++....
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999999999999999999999999999999987654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-16 Score=143.21 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=92.5
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~ 136 (291)
+..++.+|||+|||+|..+..+++.+|+.+++|+|+|+.+++.|+++....+. ++.++++|+.+++ .+ ++||+|++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEE
Confidence 34468899999999999999999988999999999999999999988765554 6888999988765 33 78999999
Q ss_pred ccccccc-------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 137 IEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 137 ~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+.++|++ .+...+++++.++|||||.+++.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9988764 2567899999999999999999764
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=121.05 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=92.7
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEEccccCCc-cC-CCccEEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADISTFE-ME-ASYDRIY 135 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~-~~~~d~~~~~-~~-~~~D~v~ 135 (291)
+.......|||+|||+|..-.+.--. |+.+||++|+++.|-+.+.+.+++....++. |+.++.++++ .+ +++|.|+
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred hcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 33334456899999999987766532 6899999999999999999999887555666 9999999987 33 8999999
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+..+++.++++.+.|+++.++|+|||++++-..
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999999999999999999888543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=123.57 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.+...+++.+.+.++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++++++++++|+.+....
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3456677777888999999999999999999998853 457999999999999999999999888899999999775433
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+||+|++.....++ .+.+.+.|+|||++++...
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEEc
Confidence 789999998766444 3557888999999988643
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=132.13 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=92.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
++.+......+|||+|||+|.++..+++++|..+|+++|+|+.+++.++++++.+++ ..+++..|+... .+++||+|+
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~fDlIv 266 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGRFDMII 266 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCCccEEE
Confidence 333433445689999999999999999998888999999999999999999998877 467778887653 247899999
Q ss_pred Eccccccc-----ccHHHHHHHHHhccccCeeEEEEee
Q 022810 136 SIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++++|.. .....+++.+.+.|+|||.+++...
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999863 3457899999999999999988654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=122.92 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
..+...+++.+.+.++.+|||||||+|..+..+++.. ++.+|+++|+++++++.++++++..+..+++++++|......
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 4556677778888899999999999999999998875 346999999999999999999998888789999999876544
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+ .+||+|++......+ .+.+.+.|||||++++..
T Consensus 142 ~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 4 789999998766444 245677899999988854
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-15 Score=123.50 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=103.3
Q ss_pred CccccchhHHHhhcCCC-hHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcchH
Q 022810 2 PIAIQTDKAKEQHYELP-TSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS---RLEDGHTVLDVGCGWGSL 77 (291)
Q Consensus 2 ~~~~~~~~~~~~~yd~~-~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~ 77 (291)
-..++.+..+..+||.. .+.|....+... ...-...+........+.++..+ ...++.+|||+|||+|.+
T Consensus 4 ~~~~~~~~~v~~~~~~~~~~~w~~~y~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~ 77 (230)
T PRK07580 4 FNYLEHKSEVRTYFNRTGFDRWARIYSDAP------VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSL 77 (230)
T ss_pred hhhhhchhhhhHHHhhhccchHHHhhCcCc------hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHH
Confidence 34566778888888853 355555443311 11000111111223333333333 245678999999999999
Q ss_pred HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHHH
Q 022810 78 SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKIS 154 (291)
Q Consensus 78 ~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~ 154 (291)
+..+++. +.+|+|+|+|+.+++.|+++....+. +++.+..+|+... .++||+|++..+++|++ +...+++.+.
T Consensus 78 ~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~ 153 (230)
T PRK07580 78 SIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYPQEDAARMLAHLA 153 (230)
T ss_pred HHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCCHHHHHHHHHHHH
Confidence 9999987 66899999999999999999887766 5789999995432 37899999999998864 4567888888
Q ss_pred hccccCee
Q 022810 155 KWMKEDTL 162 (291)
Q Consensus 155 ~~L~pgG~ 162 (291)
+.++++++
T Consensus 154 ~~~~~~~~ 161 (230)
T PRK07580 154 SLTRGSLI 161 (230)
T ss_pred hhcCCeEE
Confidence 87654443
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=127.37 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.|++++...++ +++.++++|+.+....++||+|+++++.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 446799999999999999999998889999999999999999999998887 4799999998653323689999998754
Q ss_pred ccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
... .....+++.+.+.|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211 1135678889999999999988654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=120.27 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++...+. +++++.+|+.+.. .++||+|+++.++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPY 92 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCC
Confidence 3456799999999999999999874 4999999999999999999988776 6889999987643 3689999999988
Q ss_pred ccccc---------------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 141 EHMKN---------------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.++ ...+++++.++|+|||.+++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 66532 3568999999999999998876543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=120.25 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=89.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------------CCCCeEEEEccc
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIVADI 122 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~i~~~~~d~ 122 (291)
++..+...++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..... .-.+++++++|+
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC
Confidence 334333456789999999999999999987 999999999999999764321100 012689999999
Q ss_pred cCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 123 STFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 123 ~~~~~~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++... ++||.|+...++++++ ....+++.+.++|||||++++.+...
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 887643 6799999999888883 34669999999999999877776654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-15 Score=115.69 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=103.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
...+.++.+.++.+++|||||+|..++.++...|..+|+++|-++++++..++|+.+.+++|+.++.+++.+.... .++
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 3456788899999999999999999999998889999999999999999999999999999999999999886444 479
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
|.|+.... .+.+.+++.+...|||||++++.....++.
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE~~ 141 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLETL 141 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHHHH
Confidence 99999887 366889999999999999999987766543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-15 Score=129.35 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=99.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.+...++.+|||||||+|..+..+++++|+.+++++|. +.+++.+++++.+.++ ++++++.+|+.+.+.+ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-C
Confidence 34456667777889999999999999999999999999999998 7899999999998887 4799999999865443 4
Q ss_pred ccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|+|++..++|+..+ ...+++++.+.|+|||++++.++..
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 799999999987744 3579999999999999999987643
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=123.80 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~D~v~~~~ 138 (291)
+..+|||||||+|.++..+++.+|..+++|+|+++.+++.|++++...++++++++++|+.++. .+ +++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999999999999999999999999999998888889999999997643 23 5899999987
Q ss_pred ccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 139 MFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+..+.+. ...+++.+.++|||||.+++.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 6544322 15799999999999999988764
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-15 Score=126.25 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=88.9
Q ss_pred CCCCEEEEEcCCcchHHHH--HHHHCCCCEEEEEcCCHHHHHHHHHHHHH-hCC-CCeEEEEccccCCccC-CCccEEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLY--IAQKYSNCKITGICNSKTQKEFIEEQCRV-LEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~--l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~i~~~~~d~~~~~~~-~~~D~v~~ 136 (291)
.++.+|+|||||.|.++.. ++..+|+.+++++|.++++++.|++.+.. .++ ++++|..+|+.+.... +.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998854333 33457889999999999999999999964 666 4699999999886433 78999999
Q ss_pred ccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022810 137 IEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. +++++ +++.++++++.+.|+|||.+++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 77777 789999999999999999999975
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-15 Score=127.18 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=93.0
Q ss_pred HHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc
Q 022810 50 AMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~ 127 (291)
.+++.++..+. ..+..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|++++...++. +++++++|+.+...
T Consensus 100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~ 179 (284)
T TIGR00536 100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA 179 (284)
T ss_pred HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc
Confidence 34444444332 22336999999999999999999988889999999999999999999988874 59999999876432
Q ss_pred CCCccEEEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 EASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..+||+|+++++.... ..+..++..+.+.|+|||++++...
T Consensus 180 ~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 180 GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 2489999998644211 1356788899999999999988664
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=119.38 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=85.9
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
.++...-.++||+|||.|.++..|+.+ ..+++++|+|+.+++.|++++... ++|+|.+.|+.+..++++||+|++.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEe
Confidence 456666789999999999999999998 468999999999999999988643 5899999999987766999999999
Q ss_pred cccccccc---HHHHHHHHHhccccCeeEEEEee
Q 022810 138 EMFEHMKN---YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+++++.+ ...+++++...|+|||.+++.+.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99999954 56789999999999999999765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=124.17 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=97.8
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---CCc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---ASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~---~~~ 131 (291)
.+........+|||||||+|..+..++++.+.+++++||+++++.+.|+++.+.+++ ++++++++|+.++... .+|
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccccc
Confidence 344555568899999999999999999998779999999999999999999999888 5899999999987644 569
Q ss_pred cEEEEccccccc------------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 132 DRIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~v~~~~~l~~~------------------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+|+||+++... -+.+.+++.+.++|||||.+.+..+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 999999987543 13678999999999999999887654
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-15 Score=124.35 Aligned_cols=130 Identities=23% Similarity=0.295 Sum_probs=104.3
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC
Q 022810 32 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111 (291)
Q Consensus 32 y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~ 111 (291)
..+|.|+... ++...+ .+++.+....+.+|||+|||.|.+++.+++..|..+++.+|.|..+++.+++++..++
T Consensus 133 t~pGVFS~~~--lD~GS~----lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~ 206 (300)
T COG2813 133 TLPGVFSRDK--LDKGSR----LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG 206 (300)
T ss_pred eCCCCCcCCC--cChHHH----HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC
Confidence 3458887543 333333 4556666666669999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEEccccCCccCCCccEEEEccccccccc-H----HHHHHHHHhccccCeeEEEEee
Q 022810 112 LQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN-Y----QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 112 ~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~-~----~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++..+...|..+... ++||+|+||++||.-.+ . .++++...+.|++||.|.+..-
T Consensus 207 ~~~~~v~~s~~~~~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 207 VENTEVWASNLYEPVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCccEEEEeccccccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8665666777665433 59999999999986533 2 3799999999999999988654
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-15 Score=127.40 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=87.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|++++...++ ++++++++|+.+....++||+|+++++...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 3689999999999999999998889999999999999999999998887 469999999866433368999999875421
Q ss_pred c-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 143 M-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 143 ~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ..+..+++.+.+.|+|||.+++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 1135788999999999999998643
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=119.45 Aligned_cols=114 Identities=15% Similarity=0.231 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
......+...+.. +.++.+|||+|||+|..+..+++..|+.+++|+|+|+.+++.|+++. .++.+.++|+.+
T Consensus 28 ~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~- 99 (204)
T TIGR03587 28 AAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD- 99 (204)
T ss_pred HHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-
Confidence 3333444444443 34677999999999999999998877899999999999999998753 256788899887
Q ss_pred ccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 126 EME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.+ ++||+|+++.+++|++ +..++++++.+++ ++.+++....
T Consensus 100 ~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 100 PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 444 8999999999999984 4577888888886 5677776553
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.3e-15 Score=130.81 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
+.+++.++..+ .++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.|++++...+. +++++++|+.+...
T Consensus 239 E~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~ 315 (423)
T PRK14966 239 EHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMP 315 (423)
T ss_pred HHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccc
Confidence 34455555443 356799999999999999999888889999999999999999999988876 89999999866432
Q ss_pred -CCCccEEEEcccccccc-------------------------cHHHHHHHHHhccccCeeEEEEe
Q 022810 128 -EASYDRIYSIEMFEHMK-------------------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 -~~~~D~v~~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.++||+|+|+++..... .+..+++.+.+.|+|||.+++..
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 26799999998752110 13467777788999999988754
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=123.60 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.++..+++.+. ..+.+|||+|||+|.++..+++..|..+++|+|+++.+++.+++++...+++++.++++|+.+....+
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 153 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGG 153 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCC
Confidence 44455555443 34569999999999999999998888899999999999999999999888877999999997743347
Q ss_pred CccEEEEcccccccc--------------------------cHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~--------------------------~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+||+|++++++.... ....+++.+.++|+|||.+++..
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 899999987754321 12467889999999999998854
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=117.27 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=92.4
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-cc-CCCc
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM-EASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~~-~~~~ 131 (291)
.+++.+...++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.+++++...+.++++++.+|+.+. .. ...+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 455666777889999999999999999998777889999999999999999999888887899999998652 11 1346
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|.++... ..+...+++++.+.|+|||.+++..+..
T Consensus 111 d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 111 DRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 7766542 2356789999999999999999987643
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=111.47 Aligned_cols=104 Identities=23% Similarity=0.370 Sum_probs=88.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC-CCccEEEEccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~-~~~D~v~~~~~ 139 (291)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.++.++...+. ++++++++|+.+.. .+ ++||+|+++.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999985 58999999999999999999999887 58999999998865 33 89999999998
Q ss_pred cccc--------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 140 FEHM--------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~--------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+... .....+++++.+.|+|||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8643 1346789999999999999988765
|
... |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=121.09 Aligned_cols=117 Identities=25% Similarity=0.343 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~ 127 (291)
..+..+...+...++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. ++.++..|+.+.+ .
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc
Confidence 33445545555567889999999999999999876 68999999999999999988876665 6788888887764 2
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.++||+|++..+++++++...+++.+.+.|+|||.+++..+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 378999999999999999999999999999999999987654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=120.01 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=91.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (291)
+...+......++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...+. ++.++.+|+.+....++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCe
Confidence 4444555566778899999999999999998762 34999999999999999999988776 688999998764334789
Q ss_pred cEEEEcccccccc---------------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMK---------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~---------------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|+++.++.... ....+++++.++|||||++++...
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999997654321 145678889999999999987544
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=116.79 Aligned_cols=110 Identities=15% Similarity=0.329 Sum_probs=92.4
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~ 131 (291)
+..+.+.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.++++++..++ +++.++.+|+.+... .++|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 466788899999999999999999998764 457999999999999999999998884 689999999876422 2689
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|.|++... ..++..+++.+.+.|+|||++++...
T Consensus 113 D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 113 DRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 99998652 35678899999999999999987544
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=118.51 Aligned_cols=115 Identities=21% Similarity=0.343 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEcccc
Q 022810 47 AEKAMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIS 123 (291)
Q Consensus 47 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~ 123 (291)
....+...+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. +++.+.++|+.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 33445555666655 467889999999999999999876 67999999999999999999887765 47999999998
Q ss_pred CCccCCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEE
Q 022810 124 TFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 124 ~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i 165 (291)
..+ ++||+|++..++++++ +...+++++.+.+++++++.+
T Consensus 115 ~~~--~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 115 SLC--GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hCC--CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 865 7899999999988873 467789999998887765544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=126.60 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=97.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccC-CC
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-AS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~--~~~-~~ 130 (291)
.+++.+....+..+||||||+|.++..+|+..|...++|+|+++.+++.+.+++...+++++.++++|+..+ ..+ ++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence 444455555677999999999999999999999999999999999999999999999988999999999764 223 78
Q ss_pred ccEEEEccccccccc------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKN------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|.|+++.+..+... ...+++.+.++|+|||.+.+.+-..
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 999999876654422 2679999999999999999976543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=121.92 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
..++.++......++.+|||+|||+|.++..++...|..+++++|+|+.+++.+++++......++.++.+|+.+....+
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~ 174 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGG 174 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCC
Confidence 34444444445567789999999999999999999888999999999999999999987222347999999986643337
Q ss_pred CccEEEEccccccc--------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+||+|++++++... ..+..+++++.++|+|||.+++..
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 89999998765321 124567888889999999998854
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=125.38 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=100.4
Q ss_pred hHHHhhcCCChHHHHHhhCC--CCCcccccc----CC-----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchH
Q 022810 9 KAKEQHYELPTSFFKLVLGK--YFKYSCCYF----SD-----ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSL 77 (291)
Q Consensus 9 ~~~~~~yd~~~~~y~~~~~~--~~~y~~~~~----~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~ 77 (291)
....|+||...+=|-.++-. ......+.. .. ...............+.+.+ ..++.+|||+|||+|.+
T Consensus 21 C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l-~~~~~~vLDiGcG~G~~ 99 (272)
T PRK11088 21 CPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERL-DEKATALLDIGCGEGYY 99 (272)
T ss_pred cCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc-CCCCCeEEEECCcCCHH
Confidence 34578899888777666631 111111111 10 01112222222222232222 23567899999999999
Q ss_pred HHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHH
Q 022810 78 SLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKI 153 (291)
Q Consensus 78 ~~~l~~~~p~---~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~ 153 (291)
+..+++..+. .+++|+|+|+.+++.|+++. +++.+..+|+.+++.+ ++||+|++... ...++++
T Consensus 100 ~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~ 167 (272)
T PRK11088 100 THALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEEL 167 (272)
T ss_pred HHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHH
Confidence 9999887642 47999999999999887542 3688999999988766 78999998653 2346789
Q ss_pred HhccccCeeEEEEeeccC
Q 022810 154 SKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 154 ~~~L~pgG~l~i~~~~~~ 171 (291)
.++|||||++++..+...
T Consensus 168 ~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 168 ARVVKPGGIVITVTPGPR 185 (272)
T ss_pred HhhccCCCEEEEEeCCCc
Confidence 999999999999876543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=113.98 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
-.+...+++.+.++++.+|||||||+|..+..+++. ..+|+.+|..+...+.|+++++..|+.|+.++++|...--.+
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 356778889999999999999999999999999998 559999999999999999999999998899999999874334
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+||.|+.......++. .+.+.|+|||++++-.-
T Consensus 136 ~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 89999999988876652 35677999999988654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=132.24 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.|++++...++ +++.++++|+.+....++||+|+++++..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 35689999999999999999888889999999999999999999988887 47999999986533236899999987543
Q ss_pred cc--------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 142 HM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~--------------------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.. ..+..+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 21 113457788889999999998864
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.4e-14 Score=121.07 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCccCCCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.+..+ ..++.+..+|+.++ .++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 5789999999999999999986 7899999999999999999887642 23678889998664 3789999999
Q ss_pred cccccccc--HHHHHHHHHhccccCeeEE
Q 022810 138 EMFEHMKN--YQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 138 ~~l~~~~~--~~~~l~~~~~~L~pgG~l~ 164 (291)
.+++|+++ ...+++.+.+ +.++|.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99988865 3356666665 45665543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=117.75 Aligned_cols=105 Identities=27% Similarity=0.419 Sum_probs=92.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+..++.+...|+.+.+.. ++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999998876 568999999999999999988877654688999998776543 789999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++.++..+++.+.+.|+|||.+++..+.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999999999999999999887653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-15 Score=117.08 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=111.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~~ 137 (291)
+.|+.+|||+|||.|.+..+|.+.. +++.+|+|++++.+..+.+ . .+.++++|+++-. ++ ++||.|+++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~----r---Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA----R---GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH----c---CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 3589999999999999999998863 8999999999997665543 3 4678999998732 33 899999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhh-ccCCCCCCcHHHHHHhhcCcEEEEeee
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY-FFTGGTMPSANLLLYFQDDVSVVDHWL 216 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
.+++++.++..+|+++.|+ |...+++.|+. ..|..+. +.-.|++|.... +.-.|.
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF------------g~W~~R~~l~~~GrmPvt~~---------lPy~WY 138 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF------------GHWRNRLQLLLRGRMPVTKA---------LPYEWY 138 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecCh------------HHHHHHHHHHhcCCCCCCCC---------CCCccc
Confidence 9999999999999998765 55666666543 3354432 233566665321 233465
Q ss_pred cCCCcHHHHHHHHHHHHHhcHHhHhhh
Q 022810 217 VNGKHYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 217 ~~~~~~~~t~~~w~~~l~~~~~~~~~~ 243 (291)
.+..-..-|+++..+...+.+.+|.+.
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 554433568888888888888887654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-14 Score=115.82 Aligned_cols=110 Identities=22% Similarity=0.203 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
....+++.+...++.+|||+|||+|..+..+++. ..+++++|.++.+++.+++++...+++++.++.+|..+.... +
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL--VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH--hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 4456666777888999999999999999988877 358999999999999999999988887899999998664333 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 144 ~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 89999998776544 3567889999999988665
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=114.12 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=87.2
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------------CCCCeEEEEccc
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIVADI 122 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~i~~~~~d~ 122 (291)
.+..+...++.+|||+|||.|..+..|+++ |.+|+|||+|+.+++.+.+..... ...+|++.++|+
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence 333344556789999999999999999987 999999999999998764311100 013689999999
Q ss_pred cCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEee
Q 022810 123 STFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 123 ~~~~~~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++... ..||.|+...++++++ ....+++.+.++|+|||++++.+.
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 987544 6899999999988884 456799999999999997665444
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=111.30 Aligned_cols=126 Identities=18% Similarity=0.281 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcC---CCCCC-EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEE
Q 022810 45 EDAEKAMLELYCERSR---LEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIV 119 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~---~~~~~-~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~ 119 (291)
++++.++++.+.+... +.... +|||+|||.|.+...|++..-....+|+|.|+.+++.|+..++..+.++ |+|.+
T Consensus 45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 3455667777766554 33333 9999999999999999988323459999999999999999999888865 99999
Q ss_pred ccccCCccC-CCccEEEEcccccccc--------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 120 ADISTFEME-ASYDRIYSIEMFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 120 ~d~~~~~~~-~~~D~v~~~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.|+.+.... ++||+|.--..+..+. .+...+..+.+.|+|||+++|...+.
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 999886444 8899998877766551 12457888999999999999976654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=118.73 Aligned_cols=117 Identities=10% Similarity=0.112 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
..+++.++..+. ..++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.|++++..++ ++++++|+.+...
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~ 147 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALP 147 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcc
Confidence 344444444433 223468999999999999999988878899999999999999999988764 4788999876422
Q ss_pred ---CCCccEEEEcccccccc--------------------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 128 ---EASYDRIYSIEMFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ---~~~~D~v~~~~~l~~~~--------------------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++||+|+++++..... -+..+++.+.++|+|||.+++...
T Consensus 148 ~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 148 TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 25799999998753210 134677888899999999998654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-14 Score=123.11 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
..++.....+++.+|||+|||+|.++..++.. +.+++|+|+++.++..++.+++..+++++.+..+|+.+++.. ++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 34455556788999999999999999887765 789999999999999999999998886789999999988765 789
Q ss_pred cEEEEccccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+|++++++... ..+..+++.+.++|+|||.+++..+..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999999875321 125789999999999999998877654
|
This family is found exclusively in the Archaea. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-14 Score=120.47 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=85.8
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccc-
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK- 144 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~- 144 (291)
+|||+|||+|..++.++...|..+|+|+|+|+.+++.|++|+..+++.++.++.+|+..... ++||+|++|++.-.-+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC-CceeEEEeCCCCCCCcc
Confidence 89999999999999999999888999999999999999999999997677777778766432 5999999999752221
Q ss_pred ------------------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 145 ------------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ------------------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
-...++..+.+.|+|||.+++..-
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 146688889999999999888654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=117.21 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~ 129 (291)
+.+.+...+..-.|.+|||||||.|.++..++... ...|+|+|++.......+...+-.+.+ .+.....-+++++..+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34455555544578999999999999999999884 457999999998776654433334432 2344445666665558
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.||+|+|.++++|..++-..|..+++.|+|||.+++.+...+.
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 9999999999999999999999999999999999998876544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=114.63 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----ccCCCcc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~----~~~~~~D 132 (291)
+.+++.++.+|||+|||+|..+..+++..+..+|+++|+++.|++.+.++++.. +++.++.+|+... ...++||
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCC
Confidence 357888999999999999999999998875568999999999999887776653 4789999998752 1236799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+|++.... ......+++++.++|||||.+++..+
T Consensus 144 ~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 144 VIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred EEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99965321 11123468999999999999999644
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=131.32 Aligned_cols=114 Identities=21% Similarity=0.351 Sum_probs=92.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--CccC-
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~--~~~~- 128 (291)
...+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++... ..+++.++++|+.. .+.+
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCC
Confidence 345556666667789999999999999999987 5699999999999987655321 22479999999964 3344
Q ss_pred CCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeec
Q 022810 129 ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++||+|+++.+++++++ ...+++++.++|||||++++....
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78999999999999965 578999999999999999987654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=111.89 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEEccccCCccCCCccEEEEcc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~--i~~~~~d~~~~~~~~~~D~v~~~~ 138 (291)
..++.+|||+|||+|..+..+++. +.+++++|.|+.+++.+++++...+..+ +.++.+|+.+.....+||+|+++.
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 357889999999999999999987 7899999999999999999998877743 889999987643336899999987
Q ss_pred ccccc---------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 139 MFEHM---------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~---------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++... .....+++++.++|+|||.+++..+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 76431 1245689999999999999887654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=118.51 Aligned_cols=149 Identities=10% Similarity=0.060 Sum_probs=100.1
Q ss_pred hhcC-CChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEE
Q 022810 13 QHYE-LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKI 90 (291)
Q Consensus 13 ~~yd-~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v 90 (291)
-+|| .+.+.|+.+......| .... =.+........+++.+ .++.+|||+|||+|..+..+++..+ +.+|
T Consensus 21 ~~yd~~G~~lf~~i~~~peYy-----~tr~--E~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~ 91 (301)
T TIGR03438 21 YFYDARGSELFEQICELPEYY-----PTRT--EAAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARY 91 (301)
T ss_pred hcccchHHHHHHHHHCCCccc-----cHHH--HHHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeE
Confidence 4555 5678888776543333 2000 0011112223333333 4668999999999999999998865 5899
Q ss_pred EEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC-ccCCC-----ccEEEEccccccc--ccHHHHHHHHHhccccCe
Q 022810 91 TGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-EMEAS-----YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~-~~~~~-----~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG 161 (291)
+++|+|++|++.+++++..... -++.++++|+.+. ..... ..++++..+++++ ++...+++++++.|+|||
T Consensus 92 ~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 92 VPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred EEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999988765432 2578899999863 33322 2344445567766 346679999999999999
Q ss_pred eEEEEeecc
Q 022810 162 LLFVHHFCH 170 (291)
Q Consensus 162 ~l~i~~~~~ 170 (291)
.+++..-..
T Consensus 172 ~~lig~d~~ 180 (301)
T TIGR03438 172 GLLIGVDLV 180 (301)
T ss_pred EEEEeccCC
Confidence 998855433
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=117.23 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++..+++. ++.+...+.... ..++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH
Confidence 467899999999999998888653 468999999999999999999988774 466666663332 23789999998654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ....++.++.+.|+|||.++++.+
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3 346789999999999999998765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=113.07 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
-.+...+++.+.++++.+|||||||+|..+..++... +...|+++|.++...+.|++++...+..++.++++|...-..
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 4566778888899999999999999999999999875 334799999999999999999999999899999999876443
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. .+||.|++......++ ..+.+.|++||++++..-
T Consensus 138 ~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 3 7899999998875443 336677999999988544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=115.59 Aligned_cols=105 Identities=21% Similarity=0.293 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~----~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~ 135 (291)
..++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.|+++.... ++.+...+...++.+ ++||+|+
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEE
Confidence 356789999999999999888753 34569999999999999998765433 456666666555444 7899999
Q ss_pred EcccccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.+++|+++. ..+++++.++++ |.+++.+...
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 99999999764 579999999987 5666655543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=115.69 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
++.+|||+|||+|.+++..++.. ..+++|+|++|.+++.+++|+..++++. ++....+....+..++||+|++|-.-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA- 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA- 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH-
Confidence 78999999999999999999873 4569999999999999999999998843 33444444443333699999998532
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEee
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.-...+...+.+.|||||+++++.+
T Consensus 240 --~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 240 --EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred --HHHHHHHHHHHHHcCCCceEEEEee
Confidence 2245788899999999999999764
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-15 Score=117.96 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=111.8
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC
Q 022810 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p 86 (291)
+..-+...||..++-|+..+-+.+.|+. -.++..++.+++..+-.++||+|||||..+..+...
T Consensus 83 P~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-- 146 (287)
T COG4976 83 PSAYVETLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-- 146 (287)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH--
Confidence 3456677788888888887777677742 355677777777777889999999999999999887
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cCCCccEEEEcccccccccHHHHHHHHHhccccCeeE
Q 022810 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 163 (291)
..+++|||+|++|++.|.++ ++ .-...++|+..+. ..++||+|++..++.++.+...++..+...|+|||.+
T Consensus 147 a~~ltGvDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlf 221 (287)
T COG4976 147 ADRLTGVDISENMLAKAHEK----GL-YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLF 221 (287)
T ss_pred HhhccCCchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceE
Confidence 67899999999999888763 22 1233455554433 2278999999999999999999999999999999999
Q ss_pred EEEee
Q 022810 164 FVHHF 168 (291)
Q Consensus 164 ~i~~~ 168 (291)
.++.-
T Consensus 222 aFSvE 226 (287)
T COG4976 222 AFSVE 226 (287)
T ss_pred EEEec
Confidence 98654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=111.84 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=81.9
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022810 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--- 126 (291)
+..+.++.. ++++.+|||||||+|..+..+++.. +..+|++||+++. .+..++.++++|+.+..
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLK 107 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHH
Confidence 334444444 4678899999999999999999885 3469999999881 12346899999998853
Q ss_pred -----cC-CCccEEEEccccccccc-----------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 127 -----ME-ASYDRIYSIEMFEHMKN-----------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 -----~~-~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.. ++||+|+|+.+.+...+ ...+++.+.++|+|||.+++..+..
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 22 78999999875544321 1468899999999999999976644
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-13 Score=116.26 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.+...+++.+.++++.+|||||||+|..+..+++..+ ...|+++|+++.+++.|+++++..+.+++.++++|+......
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 3455667777788899999999999999999998763 247999999999999999999988887899999998765444
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+||+|++......+ ...+.+.|+|||.+++..
T Consensus 147 ~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 689999997655333 345678899999988754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=114.42 Aligned_cols=96 Identities=24% Similarity=0.264 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++..+++ +++.+..+| .+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcH
Confidence 468899999999999999877653 34699999999999999999988876 334433332 269999997543
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.....+++++.++|||||.++++.+
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2346788999999999999998754
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-13 Score=109.24 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=102.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~ 129 (291)
...++..+++.++.+|||.|.|+|.++.+|+.. .|..+|+.+|..++..+.|++|++..++. ++++..+|+.+...++
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 345677789999999999999999999999974 46689999999999999999999999885 4999999999876668
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.||.|+. .++++.++++++.+.|+|||.+++..|+.+.
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 9999998 5689999999999999999999998776543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=115.24 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~ 128 (291)
++.-.+++.+ ..++.+|||+|||+|.+++..++.. ..+|+++|+++.+++.|++|+..+++. ++.+ ....+.. .
T Consensus 149 ~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~~-~ 223 (295)
T PF06325_consen 149 RLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDLV-E 223 (295)
T ss_dssp HHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCTC-C
T ss_pred HHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecccc-c
Confidence 3333344444 3567899999999999999999873 458999999999999999999999984 3433 2222222 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.+||+|++|-... -...++..+.++|+|||.++++.+-
T Consensus 224 ~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 224 GKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp S-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEcccc
Confidence 7899999986542 3356788889999999999997653
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-13 Score=120.55 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=93.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCC
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EAS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---~~~ 130 (291)
.++..++..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++++..++ +++++++|+.+... .++
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCC
Confidence 34445677889999999999999999999987667999999999999999999999887 57899999987532 267
Q ss_pred ccEEEEccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~----------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||.|+++.+.... .....++..+.+.|||||.+++++.+.
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999987653211 113468999999999999999877543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=109.01 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=99.5
Q ss_pred hhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022810 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 13 ~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~ 92 (291)
..||.....|+.|-+..++-...+|.. . ..+..++ +...+..+|||+|||+|.++..++.+.++.+|++
T Consensus 25 ~~~~~~~~v~~~~~g~~~~~~G~FfTP--~-------~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~g 93 (279)
T PHA03411 25 LTYEEKEFCYNNYHGDGLGGSGAFFTP--E-------GLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVC 93 (279)
T ss_pred cccCcHHHHHHhcccccccCceeEcCC--H-------HHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEE
Confidence 346655666777776654443334431 1 1121221 1223456999999999999999988765689999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccccc--------------------HHHHHHH
Q 022810 93 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--------------------YQNLLKK 152 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~--------------------~~~~l~~ 152 (291)
+|+++.+++.++++. +++.++++|+.+.....+||+|++++++.+.+. ...++..
T Consensus 94 VDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~ 168 (279)
T PHA03411 94 VELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD 168 (279)
T ss_pred EECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhh
Confidence 999999999988753 368899999998765578999999999987521 2456677
Q ss_pred HHhccccCeeEEEEee
Q 022810 153 ISKWMKEDTLLFVHHF 168 (291)
Q Consensus 153 ~~~~L~pgG~l~i~~~ 168 (291)
...+|+|+|.+++...
T Consensus 169 v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 169 VGYFIVPTGSAGFAYS 184 (279)
T ss_pred hHheecCCceEEEEEe
Confidence 7889999998777633
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-13 Score=122.43 Aligned_cols=114 Identities=19% Similarity=0.306 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-
Q 022810 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE- 126 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~- 126 (291)
...+++.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++++++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 4556777777777778899999999999999999987 5799999999999999999999888878999999997532
Q ss_pred ---cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 ---ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ---~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.. ++||+|+++++-... ...++.+.+ ++|++++++++
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~---~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA---AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh---HHHHHHHHh-cCCCeEEEEEe
Confidence 22 579999999886543 355565555 68999988875
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=120.27 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=92.9
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCcc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYD 132 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D 132 (291)
...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...|+++++++++|+.+... +++||
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 243 APALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 345567788999999999999999999875 567999999999999999999999998779999999987642 26899
Q ss_pred EEEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~~------~----------------~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+++.+.... + ....+++.+.++|||||.++.++.+
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99997653211 1 1245899999999999999876543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=111.87 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=92.3
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~ 135 (291)
.+...++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++..++.++.++..|...+... ++||.|+
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 45677899999999999999999988753 358999999999999999999999887899999998776433 6799999
Q ss_pred Eccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~----------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.+.... .....+|+.+.+.|||||+++.++.+.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 87643221 123458999999999999998876543
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=95.11 Aligned_cols=100 Identities=27% Similarity=0.453 Sum_probs=85.5
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEEcccccc-
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEMFEH- 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D~v~~~~~l~~- 142 (291)
+|+|+|||.|..+..+++ .+..+++++|+++..++.+++........++.++..|+.+... ..++|+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999999987 4578999999999999988864444444578999999988764 378999999999988
Q ss_pred cccHHHHHHHHHhccccCeeEEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 678889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=118.97 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=92.9
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
..+...++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.++++++..|+++++++++|+......++||+|+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEE
Confidence 445667889999999999999999887652 4699999999999999999999999878999999998875447899999
Q ss_pred Eccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~----------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+..+.... .....++..+.+.|+|||++++++.+.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 75432110 113468999999999999999987654
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=118.92 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=94.2
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccE
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~ 133 (291)
..++..++.+|||+|||+|..+.++++.. ++.+|+++|+++.+++.++++++..|+++++++.+|+..++ ..++||.
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE
Confidence 34567889999999999999999999875 45799999999999999999999999877999999998765 2378999
Q ss_pred EEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~------~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+++.+.... + ...+++..+.+.|||||.++.++.+.
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9986644222 1 23567999999999999998887754
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=118.35 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=94.3
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-C
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-E 128 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~-~ 128 (291)
+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...|+++++++++|+.... . .
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 3445677889999999999999999999875 34699999999999999999999999878999999998764 2 2
Q ss_pred CCccEEEEccc------cccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEM------FEHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++||.|++..+ +...++ ..+++.++.+.|||||+++.++.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 68999998653 222222 4678999999999999998876543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-13 Score=112.43 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~D~v~~~~ 138 (291)
.++.+|||||||+|.++..+++..|+.+++++|+++.+++.|++++...+. ++++++.+|+.+... +++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456799999999999999999999999999999999999999998765443 579999999876432 26899999864
Q ss_pred cc-cccc---cHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MF-EHMK---NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l-~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.- ...+ ....+++.+.+.|+|||++++..+.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 11 1111 2368999999999999999986543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=103.96 Aligned_cols=107 Identities=14% Similarity=0.243 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D~v~~~~~ 139 (291)
.++.+|||+|||+|.++..++.+. ..+|+++|.++.+++.++++++..++++++++++|+.+... ..+||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 457899999999999999765554 47999999999999999999999888789999999876432 257999999999
Q ss_pred ccccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~ 170 (291)
+.. .-...+++.+.. +|+|+++++++....
T Consensus 131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 131 FRK-GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 532 224456666655 489999999986654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=103.92 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=85.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
+.+++.+...++.+|||||||+|.++..++++ +.+++++|+++.+++.+++++.. .++++++.+|+.++..+ .+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 45667777788899999999999999999987 68999999999999999988754 34799999999998766 569
Q ss_pred cEEEEcccccccccHHHHHHHHHhc--cccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKW--MKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~--L~pgG~l~i~~ 167 (291)
|.|+++.+++.. ...+.++.+. +.++|.++++.
T Consensus 79 d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 999999887532 3444444432 44788887754
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=107.14 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
..+.......+..+|||||+|.|.++..+++++|+.+++.+|+ |..++.+++ .++++++.+|+. .+.+. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f-~~~P~-~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF-DPLPV-AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT-TCCSS-ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH-hhhcc-cc
Confidence 4455666777788999999999999999999999999999999 888887776 348999999998 34445 99
Q ss_pred EEEEcccccccc--cHHHHHHHHHhccccC--eeEEEEeecc
Q 022810 133 RIYSIEMFEHMK--NYQNLLKKISKWMKED--TLLFVHHFCH 170 (291)
Q Consensus 133 ~v~~~~~l~~~~--~~~~~l~~~~~~L~pg--G~l~i~~~~~ 170 (291)
+++...++|..+ +...+|+++++.|+|| |+|+|.+...
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 999999999985 4567999999999999 9999977654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=116.45 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=92.5
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc---CC
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EA 129 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~---~~ 129 (291)
.+...++..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++++..|++ ++.+..+|...... .+
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 445556778899999999999999999998876689999999999999999999998874 23446677655432 26
Q ss_pred CccEEEEccc------cccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEM------FEHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||.|++..+ +...++ ...+|.++.++|||||.++.++.+.
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 7999997643 322222 3679999999999999999987754
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.3e-12 Score=104.17 Aligned_cols=116 Identities=21% Similarity=0.281 Sum_probs=90.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-h-----------CCCCeEEEE
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-L-----------ELQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-~-----------~~~~i~~~~ 119 (291)
+..+++.+...++.+||..|||.|.....|+++ |.+|+|+|+|+.+++.+.+.... . ..++|++.+
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 334444456777889999999999999999988 89999999999998887433221 0 113689999
Q ss_pred ccccCCccC--CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 120 ADISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+.++... ++||+|+=...++.+ .......+.+.++|+|||.+++.+..
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 999998765 689999999999888 45678999999999999995554443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=101.74 Aligned_cols=111 Identities=20% Similarity=0.221 Sum_probs=89.5
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH------------HhCCCCeEEEEccccC
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR------------VLELQNVEIIVADIST 124 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~i~~~~~d~~~ 124 (291)
..+...++.+||+.|||.|..+..|+++ |.+|+|+|+|+..++.+.+... .....++++.++|+.+
T Consensus 37 ~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 37 SKLNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 3444556789999999999999999998 8999999999999988755210 0011379999999999
Q ss_pred Ccc--C--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 125 FEM--E--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~--~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.. . ++||+|+-...+++++ ...+..+.+.++|+|||.+++.+..
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 853 1 6899999999999994 3567999999999999998887664
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=107.44 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~ 126 (291)
...+..+++ ..++.+|||+|||+|..+..++...+ +.+++++|+++++++.|+++++..++ ++++++.+|+.+..
T Consensus 57 g~~L~~l~~---~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVK---IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHH---HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 334444443 34577999999999999999987754 57999999999999999999999998 47999999997642
Q ss_pred c-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 M-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~-------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .++||+|++...- +.+..+++.+.+.|+|||++++..
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 1 2589999987532 456788999999999999988754
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=104.77 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=79.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cC-C
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-ME-A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~-~~-~ 129 (291)
+.+.+.+ +++.+|||+|||+|.++..+++.. +..++|+|+++.+++.+++ . +++++++|+.+ .+ .+ +
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccccCCC
Confidence 3444443 367899999999999999888654 6789999999999887753 1 46788888875 32 33 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+||+|+++.+++|++++..+++++.+.++ .+++..+
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcC
Confidence 89999999999999999999999887654 4444433
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-12 Score=107.38 Aligned_cols=106 Identities=11% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 131 (291)
+.+.+.++.+|||+|||+|..+..++... +...|++||+++.+.+.+.+.++.. +||.++.+|+.... ...++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCC
Confidence 44567899999999999999999999886 3468999999998766555554432 47899999986521 12679
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|++... ...+...++.++.++|||||.+++.
T Consensus 204 DvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99999874 2233345667899999999999984
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-12 Score=110.99 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
..+++.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..++++++++++|+.++..
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh
Confidence 344444445444345689999999999999999986 78999999999999999999999988789999999987543
Q ss_pred -CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 -~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++||+|+++++-..+. ..+++.+ ..++|++++++++-
T Consensus 237 ~~~~~D~Vv~dPPr~G~~--~~~~~~l-~~~~~~~ivyvsc~ 275 (315)
T PRK03522 237 QGEVPDLVLVNPPRRGIG--KELCDYL-SQMAPRFILYSSCN 275 (315)
T ss_pred cCCCCeEEEECCCCCCcc--HHHHHHH-HHcCCCeEEEEECC
Confidence 25799999998753321 2333333 33678887777543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-12 Score=105.02 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~- 127 (291)
-+..++..+++.||.+|||.|.|+|.++..|++. .|..+|+.+|..++..+.|+++++..++ +++++.+.|+....+
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 3566778889999999999999999999999975 4778999999999999999999999999 479999999975322
Q ss_pred ---CCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEeeccC
Q 022810 128 ---EASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~~~ 171 (291)
+..+|.|+. .++++...+..+.+.| +|||++++-.|+.+
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 267999988 4577888999999999 89999999877654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=109.79 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCcc--CCCccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEM--EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~i~~~~~d~~~~~~--~~~~D~ 133 (291)
.+.+.+||+||||.|..+..+++..+..+|++||+++.+++.|++.+...+ .++++++.+|+..+.. .++||+
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 346789999999999999999876445689999999999999999886432 2479999999887532 278999
Q ss_pred EEEccccccccc----HHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHMKN----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++...-...+. ..++++.+++.|+|||++++...
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999754322211 36789999999999999887543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=102.58 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=98.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022810 33 SCCYFSDASKTLEDAEKAMLELYCERS---RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
..+.|-...++ +..++.+++.+ ....+..|||+|||+|..+..++...|.+.|+++|.|+.++..|.+|+..
T Consensus 120 ~pgVlIPRpET-----EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr 194 (328)
T KOG2904|consen 120 KPGVLIPRPET-----EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR 194 (328)
T ss_pred cCCeeecCccH-----HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH
Confidence 33555444443 34444444443 33456689999999999999999988999999999999999999999999
Q ss_pred hCC-CCeEEEEccccCC----c-cC-CCccEEEEccccccccc--------------------------HHHHHHHHHhc
Q 022810 110 LEL-QNVEIIVADISTF----E-ME-ASYDRIYSIEMFEHMKN--------------------------YQNLLKKISKW 156 (291)
Q Consensus 110 ~~~-~~i~~~~~d~~~~----~-~~-~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~ 156 (291)
.++ +++.+++.+++.. . .. +++|+++||++.-.-.| ...++.-+.++
T Consensus 195 ~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~ 274 (328)
T KOG2904|consen 195 LKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRM 274 (328)
T ss_pred HhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhh
Confidence 888 4677776555432 1 12 78999999997522211 34466677899
Q ss_pred cccCeeEEEEeeccCC
Q 022810 157 MKEDTLLFVHHFCHKT 172 (291)
Q Consensus 157 L~pgG~l~i~~~~~~~ 172 (291)
|+|||.+.+.....+.
T Consensus 275 Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 275 LQPGGFEQLELVERKE 290 (328)
T ss_pred cccCCeEEEEeccccc
Confidence 9999999998765443
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.9e-12 Score=101.68 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=85.2
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCCccEEEEcccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~~~~D~v~~~~~l 140 (291)
..+||||||.|.+...+|+.+|+..++|+|+....+..+.+++...+++|+.++++|+..+. .++++|.|+.+.+=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999999999999999999999999999999999999999999998832 23789999998765
Q ss_pred ccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
-+.+. ...+++.+.++|+|||.+.+.+-
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 54421 36799999999999999988653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=101.17 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEc
Q 022810 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVA 120 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~ 120 (291)
.....+...+..+++.. ...+||||||++|..+..+++..| +.+|+.+|.+++..+.|+++++..|+ ++|+++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 34555566666666544 467999999999999999998775 68999999999999999999999998 58999999
Q ss_pred cccCCcc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 121 DISTFEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 121 d~~~~~~-------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+.+... .++||+|+....- .++...++.+.+.|+|||++++...
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence 9976421 1479999998643 5678889999999999999988543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.7e-12 Score=101.32 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------cC-C
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------ME-A 129 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--------~~-~ 129 (291)
.+.++.+|||+|||+|.++..++++. +..+|+++|+|+.+ ...++.++++|+.+.. .+ +
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 45688999999999999999998875 45689999999863 1236888889987642 22 6
Q ss_pred CccEEEEccccc--------cc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 130 SYDRIYSIEMFE--------HM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~v~~~~~l~--------~~---~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+||+|+++.+.+ +. .+...++..+.++|+|||++++..+.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 799999965321 11 12367899999999999999986543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=122.56 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC----------------CCeEEEEccccCCcc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----------------QNVEIIVADISTFEM 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~i~~~~~d~~~~~~ 127 (291)
+.+|||+|||+|.+++.+++++|..+|+|+|+|+.+++.|++|+..+++ ++++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5689999999999999999998878999999999999999999987542 369999999987543
Q ss_pred C--CCccEEEEccccccc----------------------------------c----cHHHHHHHHHhccccCeeEEEEe
Q 022810 128 E--ASYDRIYSIEMFEHM----------------------------------K----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~--~~~D~v~~~~~l~~~----------------------------------~----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .+||+|++|++.-.- . -+..++..+.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 369999999864110 0 02567788889999999999876
Q ss_pred ec
Q 022810 168 FC 169 (291)
Q Consensus 168 ~~ 169 (291)
-.
T Consensus 279 G~ 280 (1082)
T PLN02672 279 GG 280 (1082)
T ss_pred Cc
Confidence 54
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-12 Score=112.37 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=85.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~-----~~~~D~v~ 135 (291)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++..++++ +++++++|+.+... .++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999998876653 2459999999999999999999999874 79999999987531 25899999
Q ss_pred Eccccccc---------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 136 SIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++++...- .++..++..+.++|+|||.++..+.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99875322 23556677788999999998876543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=110.34 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.....++..+.+.+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++++.+++++++++.+|+.+.
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~ 293 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKF 293 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH
Confidence 333444555545444345679999999999999999965 679999999999999999999999888899999999765
Q ss_pred ccC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 EME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
... .+||+|+++++-..+ ...+++.+.+ ++|++++++++
T Consensus 294 ~~~~~~~~D~vi~DPPr~G~--~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 294 ATAQMSAPELVLVNPPRRGI--GKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred HHhcCCCCCEEEECCCCCCC--cHHHHHHHHh-cCCCeEEEEEe
Confidence 322 569999999986433 2455566654 78999988875
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=101.26 Aligned_cols=114 Identities=18% Similarity=0.335 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEE-ccccCC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV-ADISTF 125 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~-~d~~~~ 125 (291)
-..+..+++ ..++.+|||||++.|..+..++...| ..+++.+|.++++.+.|++++++.|++ ++..+. +|+.+.
T Consensus 48 g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 344444443 45788999999999999999999987 779999999999999999999999995 588888 587664
Q ss_pred cc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 126 EM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 126 ~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. .++||+|+....= .+++.+++.+.++|+|||.+++...
T Consensus 125 l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 125 LSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 33 2899999997533 5678999999999999999988544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.6e-12 Score=99.81 Aligned_cols=118 Identities=17% Similarity=0.250 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC--CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc
Q 022810 44 LEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d 121 (291)
+...|..+....++.+.+++ ..-|||||||+|..+..+... +..++|+|+|+.|++.|.+.--+ -.++.+|
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-----gdlil~D 101 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-----GDLILCD 101 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-----cCeeeee
Confidence 44455667777777777766 678999999999999998876 78999999999999999873222 2467788
Q ss_pred ccC-CccC-CCccEEEEcccccccc-------c----HHHHHHHHHhccccCeeEEEEee
Q 022810 122 IST-FEME-ASYDRIYSIEMFEHMK-------N----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 122 ~~~-~~~~-~~~D~v~~~~~l~~~~-------~----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+-+ +++. ++||.||+...++++- + ...++..+..+|++|+..+++..
T Consensus 102 MG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 102 MGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred cCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 764 4554 8999999998887761 1 34578889999999999888754
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=119.98 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc--CCCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM--EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~--~~~~D~v~~~~ 138 (291)
++.+|||+|||+|.++..++... ..+|++||+|+.+++.|++++..++++ +++++++|+.+... .++||+|++++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999999762 347999999999999999999999884 69999999876432 36899999987
Q ss_pred cccc-----------cccHHHHHHHHHhccccCeeEEEEee
Q 022810 139 MFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~-----------~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+... ..++..++..+.++|+|||.+++.+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 6421 23567788899999999999888654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=97.79 Aligned_cols=105 Identities=23% Similarity=0.303 Sum_probs=86.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCcc---------CCCccE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM---------EASYDR 133 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~---------~~~~D~ 133 (291)
+.+|||||||+|.++.++++.+|..+..-.|.++..+...+......+.+|+ .-+..|+....- .++||.
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 3369999999999999999999999999999999998888888877776553 344566655421 158999
Q ss_pred EEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++.+++|-+ .....+++.+.+.|+|||.|++..|
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 9999999777 4568899999999999999998654
|
The function of this family is unknown. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=100.32 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~---p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
.+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++. .++.++.+|+.......+||+|++|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence 36799999999999999998764 2568999999999999998764 257899999987655578999999998
Q ss_pred ccccc--c----------HHHHHHHHHhccccCee
Q 022810 140 FEHMK--N----------YQNLLKKISKWMKEDTL 162 (291)
Q Consensus 140 l~~~~--~----------~~~~l~~~~~~L~pgG~ 162 (291)
+.-.. + ...+++++.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 86441 1 45588888886666664
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=101.48 Aligned_cols=115 Identities=12% Similarity=0.157 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccC
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~ 124 (291)
.+...+..+++ ..++.+||||||++|..+..++...| +.+++++|.+++..+.|++++++.|+. +++++.+|+.+
T Consensus 105 ~~g~lL~~L~~---~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 105 DQAQLLAMLVQ---ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHHH---hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 33444444443 34578999999999999999998654 568999999999999999999999994 89999999876
Q ss_pred Ccc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 125 FEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 125 ~~~-------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
... .++||+|+....- .++..+++.+.+.|+|||.+++..
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEec
Confidence 421 2589999998653 567889999999999999988854
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-11 Score=108.73 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
....+++.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++++++++.+|+.+..
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 34456666677777777889999999999999999987 5699999999999999999999998888999999997632
Q ss_pred ----c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 ----M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ----~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. ..+||+|+++++-..+ ...+++.+.+ ++|++.+++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEcC
Confidence 1 1479999998874322 2556666554 78999887753
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=100.79 Aligned_cols=107 Identities=23% Similarity=0.325 Sum_probs=86.1
Q ss_pred CEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~ 137 (291)
.+||++|||.|.....+.+..|. ..++++|.|+.+++..+++..... +++.....|+.... .+ +++|+|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999999999887765 899999999999988887654332 35666666665432 22 899999999
Q ss_pred cccccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 138 EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 138 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.+|..+ ......++++.++|||||.+++.+.+.-.
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 999888 45678999999999999999998776543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-11 Score=102.04 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCcc--CCCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~--~~~~D~v 134 (291)
.+.+.+||+||||+|..+..+++..+..+++++|+++.+++.+++.+...+ .++++++.+|...... .++||+|
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 445669999999999999998876545789999999999999999875532 1468888888765321 2789999
Q ss_pred EEccccccc--cc--HHHHHHHHHhccccCeeEEEEe
Q 022810 135 YSIEMFEHM--KN--YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~--~~--~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++....... .+ ..++++.+++.|+|||++++..
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 997653222 12 4678999999999999998863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=97.22 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=70.8
Q ss_pred EEEcCCHHHHHHHHHHHHHhC---CCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 91 TGICNSKTQKEFIEEQCRVLE---LQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~---~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+|+|+.|++.|+++.+..+ .++++++++|+.+++.+ ++||+|++..+++++++...++++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 589999999999987765322 24699999999998876 78999999999999999999999999999999999998
Q ss_pred eeccC
Q 022810 167 HFCHK 171 (291)
Q Consensus 167 ~~~~~ 171 (291)
++..+
T Consensus 81 d~~~~ 85 (160)
T PLN02232 81 DFNKS 85 (160)
T ss_pred ECCCC
Confidence 77654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=93.81 Aligned_cols=126 Identities=15% Similarity=0.218 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHH------cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC--C-CC
Q 022810 44 LEDAEKAMLELYCER------SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE--L-QN 114 (291)
Q Consensus 44 l~~~~~~~~~~~~~~------~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~ 114 (291)
+.++...+...+.+. ....++.+|||||||+|..++.++...+..+|+..|.++ .++.++.+++.++ . .+
T Consensus 20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGR 98 (173)
T ss_dssp ---HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccc
Confidence 334445555555552 334578899999999999999999875578999999998 9999999998876 2 47
Q ss_pred eEEEEccccCCc----cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 115 VEIIVADISTFE----ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 115 i~~~~~d~~~~~----~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+.+...|+.+.. .. .+||+|++..+++.-...+.+++.+.++|+|+|.+++....+
T Consensus 99 v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 99 VSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp -EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 888898886632 12 589999999999988889999999999999999977766543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.8e-11 Score=102.51 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC--C--CCeEEEEccccCCcc---CCCccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE--L--QNVEIIVADISTFEM---EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~--~--~~i~~~~~d~~~~~~---~~~~D~ 133 (291)
.+++.+||+||||.|..+..+++..+..+|+.||+++.+++.+++.+...+ . ++++++.+|+..... .++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 456789999999999999999865334689999999999999999876532 2 479999999865421 368999
Q ss_pred EEEcccccccc----cHHHHHHHHHhccccCeeEEEEe
Q 022810 134 IYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 134 v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|++...-...+ -...+++.+++.|+|||++++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99975432222 13578999999999999987754
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-11 Score=105.76 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-------C---CCeEEEEccccCCc------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------L---QNVEIIVADISTFE------ 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-------~---~~i~~~~~d~~~~~------ 126 (291)
++.+|||||||-|+...-..... -..++|+|++...++.|+++.+... . -...++.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78899999999888666665542 5689999999999999999983311 1 13677888876432
Q ss_pred cC-CCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 127 ME-ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 127 ~~-~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.. .+||+|-|..++|+. .....+|+++.+.|+|||+++.++++...
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 22 489999999999998 34566999999999999999999987543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-11 Score=97.39 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCC------CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022810 49 KAMLELYCERSRLE------DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 49 ~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~ 122 (291)
..--..++.++... ...+.||.|+|.|..+..+.... ..+|..||+++..++.|++.+......-.++.+..+
T Consensus 35 i~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL 113 (218)
T PF05891_consen 35 IQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G
T ss_pred HHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH
Confidence 33344455554332 45689999999999999876544 569999999999999999766542222367888999
Q ss_pred cCCccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 123 STFEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 123 ~~~~~~-~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++.++ .+||+|++.+++.|+ .+..++|+++++.|+|+|++++-.-
T Consensus 114 Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 114 QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 988766 799999999999999 4578899999999999999999654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-11 Score=97.78 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=90.9
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEEEEcccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~D~v~~~~~l 140 (291)
..+||||||.|.+...+|++.|...++|||+....+..|.+.+.+.+++|+.+++.|+..+. .+ ++.|-|+.+.+=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999999999999999999999999999999999989999999998743 23 599999998876
Q ss_pred ccccc--------HHHHHHHHHhccccCeeEEEEe
Q 022810 141 EHMKN--------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
-+.+. ...+++.+.+.|+|||.+.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 55522 4679999999999999999865
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.3e-11 Score=103.82 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-----HHhC--CCCeEEEEccccCCccC--CCc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-----RVLE--LQNVEIIVADISTFEME--ASY 131 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~-----~~~~--~~~i~~~~~d~~~~~~~--~~~ 131 (291)
...+.+||+||||.|..+..+.+..+..+|++||+++++++.|++.. .... .++++++.+|+.++... ++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45667999999999999998887644579999999999999999621 1111 25899999999875322 689
Q ss_pred cEEEEcccccc---c--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEH---M--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~---~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|++...-.. . --..++++.+++.|+|||++++...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999853211 1 1125689999999999999888643
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=91.49 Aligned_cols=82 Identities=27% Similarity=0.352 Sum_probs=70.2
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
..+.-.+.+|+|+|||||.+++..+-.. ..+|+|+|+++++++.+++|+.+. ..++.|+.+|+.++. .++|.|+.|
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC--CccceEEEC
Confidence 4455578899999999999999988763 478999999999999999999884 348999999999875 678999999
Q ss_pred cccccc
Q 022810 138 EMFEHM 143 (291)
Q Consensus 138 ~~l~~~ 143 (291)
+++...
T Consensus 116 PPFG~~ 121 (198)
T COG2263 116 PPFGSQ 121 (198)
T ss_pred CCCccc
Confidence 998554
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=105.92 Aligned_cols=129 Identities=22% Similarity=0.330 Sum_probs=89.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCcchHHHHHHHHC----CCCEEEEEcCCHHHHHHHHHHH
Q 022810 36 YFSDASKTLEDAEKAMLELYCERSRLE----DGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~----p~~~v~~vD~s~~~~~~a~~~~ 107 (291)
.|+.+....+..+.+....+.+..... .+..|||+|||+|.++...++.. ...+|++||.|+.++..+++.+
T Consensus 155 ~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v 234 (448)
T PF05185_consen 155 VFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRV 234 (448)
T ss_dssp HHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHH
Confidence 444444444455555555555554433 25789999999999987766542 2369999999999888887777
Q ss_pred HHhCC-CCeEEEEccccCCccCCCccEEEEccc--ccccccHHHHHHHHHhccccCeeEE
Q 022810 108 RVLEL-QNVEIIVADISTFEMEASYDRIYSIEM--FEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 108 ~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~--l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
+.++. ++|+++.+|++++..+.++|+|||-.+ +..-+-.++.|....+.|||||+++
T Consensus 235 ~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 235 NANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 77777 689999999999988899999998553 2222445677888899999999864
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-11 Score=98.54 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=74.3
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~ 143 (291)
.++|+|||+|..++.++.. -.+|+|+|+|+.|++.|++.....-. ...+....+..++... ++.|+|+|..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 8999999999888888887 46999999999999988765433222 1233444444444433 899999999999888
Q ss_pred ccHHHHHHHHHhccccCe-eEEE
Q 022810 144 KNYQNLLKKISKWMKEDT-LLFV 165 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG-~l~i 165 (291)
|.+.+++.+.++||++| .+.+
T Consensus 114 -dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEEE
Confidence 67899999999999877 4444
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-10 Score=90.11 Aligned_cols=113 Identities=24% Similarity=0.274 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCCC-EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
+.++.+.-.-.+.... +++|||+|.|..++.++-.+|..+++.+|.+..-+...+......+++|++++++.+++....
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~ 113 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYR 113 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTT
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccC
Confidence 4445443322233333 899999999999999999999999999999999999999999999999999999999993334
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+||+|++..+ .....+++-+...+++||.+++-
T Consensus 114 ~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 114 ESFDVVTARAV----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp T-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 89999999865 46778899999999999998773
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=97.84 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--C----CeEEEEccccC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--Q----NVEIIVADIST 124 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~----~i~~~~~d~~~ 124 (291)
++..++-..-.+++..++|+|||-|+-++-.-+.. -..++|+|++...++.|+++.+.-.- + .+.|+.+|...
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 34443333334678899999999999877776552 35899999999999999988765321 1 36889998765
Q ss_pred C------ccCC-CccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 125 F------EMEA-SYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 125 ~------~~~~-~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
. +++. +||+|-|..++|+. .....+++++.++|+|||+++-+.|+..
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 2 2233 49999999999886 4456699999999999999998888753
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=94.99 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~ 124 (291)
.+...+..+++. .+..+|||||+++|..+..++... ++.+++.+|.+++..+.|++++.+.|+ ++|+++.+|+.+
T Consensus 66 ~~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 66 DEGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 334455555543 346799999999999999999875 467999999999999999999999997 689999999877
Q ss_pred Ccc--------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 125 FEM--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 ~~~--------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
... .++||+|+...-- ..+...++.+.+.|+|||++++.
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEc
Confidence 421 1589999998542 45677888899999999998874
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-10 Score=90.07 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE---------EEEEcCCHHHHHHHHHHHHHhCCC-CeEEEE
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK---------ITGICNSKTQKEFIEEQCRVLELQ-NVEIIV 119 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~---------v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~ 119 (291)
.+...++......++..|||..||+|++.++.+...+... ++|+|+++.+++.+++|++..++. .+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3445566667778899999999999999999877654555 899999999999999999999884 689999
Q ss_pred ccccCCccC-CCccEEEEccccccc-c-------cHHHHHHHHHhcccc
Q 022810 120 ADISTFEME-ASYDRIYSIEMFEHM-K-------NYQNLLKKISKWMKE 159 (291)
Q Consensus 120 ~d~~~~~~~-~~~D~v~~~~~l~~~-~-------~~~~~l~~~~~~L~p 159 (291)
.|+.+++.. +++|.|++++++..- . -+..+++.+.++|++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 999998844 899999999988543 1 135577888888998
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=103.59 Aligned_cols=106 Identities=19% Similarity=0.199 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC-----CCccEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME-----ASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~~-----~~~D~v 134 (291)
.|.+|||+-|=||.++.+.+.. |+ +||.||.|...++.|++|++.+++ +++.|+++|+.++... .+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 3899999999999999999976 66 999999999999999999999998 3689999999886422 489999
Q ss_pred EEcccccc---------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.++-.. ..++..++..+.++|+|||.+++.+...
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99885422 2567889999999999999999876654
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=91.93 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc-----cCCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-----MEASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~-----~~~~~D~v~ 135 (291)
-++.++||+.||+|.++...+++. ..+|+.||.++..+..+++|++..+.. ++.++.+|+.... ...+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 368999999999999999999884 468999999999999999999999884 5899999965432 137899999
Q ss_pred EcccccccccHHHHHHHHH--hccccCeeEEEEeeccCC
Q 022810 136 SIEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~~ 172 (291)
+.+++..-.....++..+. .+|+++|.++++......
T Consensus 120 lDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~ 158 (183)
T PF03602_consen 120 LDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKED 158 (183)
T ss_dssp E--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSS
T ss_pred ECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCC
Confidence 9999865433577888886 789999999998876533
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=108.56 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHH--HHHh---C--CCCeEEEEccccCCcc--CCC
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQ--CRVL---E--LQNVEIIVADISTFEM--EAS 130 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~--~~~~---~--~~~i~~~~~d~~~~~~--~~~ 130 (291)
.+++.+|||||||+|..+..+++. +. .+++++|+++++++.++++ +... . .++++++.+|..+... +++
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 356789999999999999999864 45 7999999999999999983 2221 1 1479999999987532 278
Q ss_pred ccEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEee
Q 022810 131 YDRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
||+|+++......+. ..++++.+++.|+|||+++++..
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 999999865433221 24689999999999999988653
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=90.87 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc--c--C-CCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--M--E-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~--~--~-~~~D~v~~ 136 (291)
.+.+|||++||+|.++..++++. ..+|+++|.++.+++.+++++...+.. +++++.+|+.+.. . . ..+|+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999884 348999999999999999999998874 6899999995532 1 1 24899999
Q ss_pred cccccccccHHHHHHHHH--hccccCeeEEEEeecc
Q 022810 137 IEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~ 170 (291)
.+++.. .....++..+. .+|+++|+++++....
T Consensus 128 DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 128 DPPFFN-GALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred CcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 888753 34455566553 4689999988876543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=96.88 Aligned_cols=89 Identities=24% Similarity=0.348 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+.+.+
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 456677788888888999999999999999999988 67999999999999999987754 34799999999887543
Q ss_pred CCccEEEEcccccc
Q 022810 129 ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~~~D~v~~~~~l~~ 142 (291)
.+|.|+++.+++.
T Consensus 91 -~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 -EFNKVVSNLPYQI 103 (258)
T ss_pred -hceEEEEcCCccc
Confidence 5899999988753
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=98.36 Aligned_cols=103 Identities=28% Similarity=0.428 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCccEEEEc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~-~~~D~v~~~ 137 (291)
.+-.+..|||+|||+|.++...++.. ..+|++||.|.-+ +.|.+.+..++.++ |+++.+.+++...| ++.|+|++-
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeeh
Confidence 45578999999999999999999885 5789999997654 99999999999854 89999999998888 999999998
Q ss_pred cccccc---ccHHHHHHHHHhccccCeeEE
Q 022810 138 EMFEHM---KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 138 ~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 164 (291)
++=+.+ .-...++-.=-+.|+|||.++
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 765443 223444545568899999875
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=93.52 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHC----C-CCEEEEEcCCHHHHHHHHHHH----
Q 022810 41 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKY----S-NCKITGICNSKTQKEFIEEQC---- 107 (291)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~----p-~~~v~~vD~s~~~~~~a~~~~---- 107 (291)
...++......+..+++.....+..+|+..||++|. +++.+.+.. + ..+++|+|+|+.+++.|++-.
T Consensus 9 ~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~ 88 (196)
T PF01739_consen 9 PEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPER 88 (196)
T ss_dssp TTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGG
T ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHH
Confidence 344444445455444444333467899999999995 344444421 1 369999999999999998611
Q ss_pred ----------HH-----hC--------C-CCeEEEEccccC-CccCCCccEEEEcccccccc--cHHHHHHHHHhccccC
Q 022810 108 ----------RV-----LE--------L-QNVEIIVADIST-FEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKED 160 (291)
Q Consensus 108 ----------~~-----~~--------~-~~i~~~~~d~~~-~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pg 160 (291)
.+ .+ + ++|+|...|+.+ .+..+.||+|+|.+++.++. ....+++.+++.|+||
T Consensus 89 ~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 89 SLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp GGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred HHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 00 01 1 468999999998 33338999999999999993 4578999999999999
Q ss_pred eeEEEE
Q 022810 161 TLLFVH 166 (291)
Q Consensus 161 G~l~i~ 166 (291)
|+|++.
T Consensus 169 G~L~lG 174 (196)
T PF01739_consen 169 GYLFLG 174 (196)
T ss_dssp EEEEE-
T ss_pred CEEEEe
Confidence 999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-10 Score=100.47 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=84.9
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 142 (291)
+.+|||++||+|..++.++...+..+|+++|+++.+++.+++|++.++++++.+.++|+..+.. .++||+|++++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 5689999999999999998876445899999999999999999999988778899999977543 367999999763
Q ss_pred cccHHHHHHHHHhccccCeeEEEEe
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.....++..+.+.+++||+++++.
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 334678888778889999999983
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.7e-10 Score=96.66 Aligned_cols=114 Identities=15% Similarity=0.211 Sum_probs=95.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~~~~-~~ 130 (291)
..++......+|..|||--||||++++.+.-. |++++|+|++..|+.-|+.|++..++....+... |+..++++ .+
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence 34445556789999999999999999998865 9999999999999999999999998866666666 99999887 56
Q ss_pred ccEEEEccccccc-----cc----HHHHHHHHHhccccCeeEEEEee
Q 022810 131 YDRIYSIEMFEHM-----KN----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~v~~~~~l~~~-----~~----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+|.|++.++..-. .. +.++++.+.++|++||++++..+
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999998876332 11 57789999999999999988765
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=94.00 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CC-CCeEEEE-ccccCCc-----cCCCccEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-EL-QNVEIIV-ADISTFE-----MEASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~i~~~~-~d~~~~~-----~~~~~D~v 134 (291)
++.++||||||+|.+...++.+.++.+++|+|+++.+++.|++++..+ ++ ++|++.. .|..... ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999888888777899999999999999999999998 67 4687754 3332221 12689999
Q ss_pred EEccccccc
Q 022810 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+||++++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999998755
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=97.24 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~ 127 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+. ++++++++|+.+...
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 456777888888888999999999999999999987 67899999999999999999877663 589999999987654
Q ss_pred CCCccEEEEccccccc
Q 022810 128 EASYDRIYSIEMFEHM 143 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~ 143 (291)
..||.|+++.+++..
T Consensus 100 -~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 -PYFDVCVANVPYQIS 114 (294)
T ss_pred -cccCEEEecCCcccC
Confidence 478999998877433
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.1e-10 Score=98.15 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
...+++.+++.+...+ .+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++++++++.+|+.++..
T Consensus 183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 3455566666554333 47999999999999999987 45999999999999999999999998889999999876422
Q ss_pred C-----------------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 E-----------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~-----------------~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ..||+|+..++-..+ ...+++.+.+ |++++++++-
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~--~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL--DPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred HHhhccccccccccccccCCCCEEEECCCCCCC--cHHHHHHHHc---CCcEEEEEcC
Confidence 1 137999999884322 3455555544 7888888653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-10 Score=96.89 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
..++.+++.+...++.+|||||||+|.++..++++. .+|+|+|+++.+++.+++++.. ++++++++|+.+.+.+.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH
Confidence 455677777788888999999999999999999984 4999999999999999887643 47999999999876542
Q ss_pred -CccEEEEccccc
Q 022810 130 -SYDRIYSIEMFE 141 (291)
Q Consensus 130 -~~D~v~~~~~l~ 141 (291)
.+|.|++|.++.
T Consensus 104 ~~~~~vv~NlPY~ 116 (272)
T PRK00274 104 LQPLKVVANLPYN 116 (272)
T ss_pred cCcceEEEeCCcc
Confidence 258999998763
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=96.58 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
....+++.+.+.+... +.+|||++||+|.++..+++. ..+|+++|.++.+++.+++++..+++++++++.+|+.+..
T Consensus 191 ~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 191 VNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 3345566665555432 357999999999999999887 4599999999999999999999999888999999997642
Q ss_pred c-----------------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 M-----------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~-----------------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ..+||+|+..++-..+ ...+++.+.+ |++++++++-
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYISCN 321 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEEEeC
Confidence 1 1158999999985322 3455566654 6788777653
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=98.86 Aligned_cols=120 Identities=24% Similarity=0.324 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022810 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~ 122 (291)
........++..+++.+...++.++||+-||.|.++..++++ ..+|+|+|+++.+++.|+++++.++++|++|..+++
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a 350 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA 350 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH
Confidence 344555678888888888888899999999999999999976 789999999999999999999999998899999999
Q ss_pred cCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 123 STFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 123 ~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+++... ..+|.|+..++=..+. ..+++.+.+ ++|..++++++
T Consensus 351 e~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 351 EEFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred HHHhhhccccCCCCEEEECCCCCCCC--HHHHHHHHh-cCCCcEEEEeC
Confidence 987543 4789999998765443 345555554 67888888865
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-10 Score=90.91 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
..++.+|||+.||.|.+++.+++..++..|+++|++|.+++.++++++.++++ ++..+++|+.++.....+|.|+++.+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 46799999999999999999998655789999999999999999999999984 58999999998865688999999875
Q ss_pred ccccccHHHHHHHHHhccccCeeEE
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
-. ...++..+.+++++||++.
T Consensus 179 ~~----~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ES----SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SS----GGGGHHHHHHHEEEEEEEE
T ss_pred HH----HHHHHHHHHHHhcCCcEEE
Confidence 43 2357788889999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=93.46 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..+..|||+|||+|.++...++.. ..+|++|+. .+|.+.|++..+.+.+ ++|.++.+.++++..+++.|+|++-++-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 467899999999999999998874 568999998 4588999999888877 6899999999999999999999997654
Q ss_pred ccc--ccHHHHHHHHHhccccCeeEEEE
Q 022810 141 EHM--KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~--~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.-+ +..-+..-..++.|+|+|.++=.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 333 22223333456999999997654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-10 Score=95.03 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc----CCCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM----EASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~----~~~~D~v~~ 136 (291)
.+.+|||+-|=+|.++.+.+... ..+|+.||.|..+++.+++|+..+++ ++++++..|+.+... .++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999999887651 34899999999999999999999987 479999999987421 278999999
Q ss_pred cccccc------cccHHHHHHHHHhccccCeeEEEEeec
Q 022810 137 IEMFEH------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.++-.. ..++..++..+.++|+|||.+++.+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 886321 146788999999999999998776553
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=89.04 Aligned_cols=96 Identities=17% Similarity=0.303 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~~l~ 141 (291)
...++||||+|.|..+..++..+ .+|++.|.|+.|. .+.++.|. +++ |..++.. +.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr----~rL~~kg~---~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMR----WRLSKKGF---TVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHH----HHHHhCCC---eEE--ehhhhhccCCceEEEeehhhhh
Confidence 45689999999999999999874 5899999999975 44444554 222 2223322 26899999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
...++..+|+.+++.|+|+|++++...-
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999887653
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=91.54 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=95.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHCC-----CCEEEEEcCCHHHHHHHHH
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~p-----~~~v~~vD~s~~~~~~a~~ 105 (291)
.+|. .+..++......+..++..... ...+|+-.||++|. ++..+.+..+ ..+|+|+|+|..+++.|+.
T Consensus 70 ~FFR-~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 70 EFFR-DPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred hhcc-CcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4444 4456666666666666544332 47899999999995 5555666554 4799999999999999975
Q ss_pred HHHH-----h----------------C-------C-CCeEEEEccccCCc-cCCCccEEEEccccccc--ccHHHHHHHH
Q 022810 106 QCRV-----L----------------E-------L-QNVEIIVADISTFE-MEASYDRIYSIEMFEHM--KNYQNLLKKI 153 (291)
Q Consensus 106 ~~~~-----~----------------~-------~-~~i~~~~~d~~~~~-~~~~~D~v~~~~~l~~~--~~~~~~l~~~ 153 (291)
-.-. . + + +.|.|...|+.+.. ..+.||+|+|.+++.++ +...++++++
T Consensus 148 G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f 227 (268)
T COG1352 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRF 227 (268)
T ss_pred CCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHH
Confidence 2100 0 1 1 34788888888766 55889999999999998 4567899999
Q ss_pred HhccccCeeEEEE
Q 022810 154 SKWMKEDTLLFVH 166 (291)
Q Consensus 154 ~~~L~pgG~l~i~ 166 (291)
+..|+|||+|++-
T Consensus 228 ~~~L~~gG~LflG 240 (268)
T COG1352 228 ADSLKPGGLLFLG 240 (268)
T ss_pred HHHhCCCCEEEEc
Confidence 9999999999984
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-10 Score=90.46 Aligned_cols=104 Identities=21% Similarity=0.343 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----C-----------------------
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----Q----------------------- 113 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-----~----------------------- 113 (291)
..+..+|||||.+|.++..+++.+....+.|+|+++..|..|+++++..-. .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 457789999999999999999998556799999999999999987643210 0
Q ss_pred -------CeEEEEc-------cccCCccCCCccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEE
Q 022810 114 -------NVEIIVA-------DISTFEMEASYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 114 -------~i~~~~~-------d~~~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
++.+... |+.+. ....||+|+|..+--++ .....+++++.++|.|||+|+++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111111 11111 11579999998765444 45788999999999999999884
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=96.18 Aligned_cols=158 Identities=21% Similarity=0.306 Sum_probs=121.7
Q ss_pred hHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCC
Q 022810 9 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 88 (291)
Q Consensus 9 ~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~ 88 (291)
..+..+|+...++|...|+..++.+ .+.+. ........+.-...+-.....++..++|+|||.|....+++.. ..+
T Consensus 59 e~~~~~y~~~~dl~~~~w~~~~h~~--~~~e~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~~~ 134 (364)
T KOG1269|consen 59 EQIAKYYNNSTDLYERNWGQSFHFG--RIPEG-NSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-KKA 134 (364)
T ss_pred hHHHHHhcccchhhhhhhccchhcc--Cccch-hHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh-ccC
Confidence 4577899999999999999888763 22211 1111111111111222345667889999999999999999865 378
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 89 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.++|+|.++..+..+........++ +..++.+|+-..+++ +.||.+.+..+.+|.++...+++++.++++|||+++..
T Consensus 135 ~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 135 GVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999888888777773 455688888887777 89999999999999999999999999999999999886
Q ss_pred eecc
Q 022810 167 HFCH 170 (291)
Q Consensus 167 ~~~~ 170 (291)
....
T Consensus 215 e~i~ 218 (364)
T KOG1269|consen 215 EWIK 218 (364)
T ss_pred HHHH
Confidence 6654
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=87.17 Aligned_cols=98 Identities=26% Similarity=0.336 Sum_probs=87.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC-ccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS-YDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~-~D~v~~~~~l~~ 142 (291)
+.+++|||+|.|..++.++-.+|..+|+.+|....-+...+....+.+++|++++++.++++..... ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 6899999999999999999888999999999999999999999999999899999999999875444 999999865
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+...+.+-+...+++||.+++
T Consensus 145 -a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 -ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -cchHHHHHHHHHhcccCCcchh
Confidence 3567788889999999998654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-09 Score=89.53 Aligned_cols=99 Identities=18% Similarity=0.340 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||||||+|.++..++++. .+++++|+++.+++.+++++.. .++++++.+|+...+.+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 3556777787888889999999999999999999984 5799999999999999877643 34799999999887654
Q ss_pred CCcc---EEEEcccccccccHHHHHHHHHh
Q 022810 129 ASYD---RIYSIEMFEHMKNYQNLLKKISK 155 (291)
Q Consensus 129 ~~~D---~v~~~~~l~~~~~~~~~l~~~~~ 155 (291)
.+| +|+++.+++ + ...++.++..
T Consensus 91 -~~d~~~~vvsNlPy~-i--~~~il~~ll~ 116 (253)
T TIGR00755 91 -DFPKQLKVVSNLPYN-I--SSPLIFKLLE 116 (253)
T ss_pred -HcCCcceEEEcCChh-h--HHHHHHHHhc
Confidence 466 888887764 2 2344444443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=82.09 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=110.5
Q ss_pred HHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCE
Q 022810 11 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCK 89 (291)
Q Consensus 11 ~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~ 89 (291)
...-+|..-.|++.|+.......+ .-. ...-..+.|.+.++...|..|||+|.|+|-++..+.++. +...
T Consensus 5 ~~~~f~~e~~F~k~wi~~PrtVGa-I~P--------sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~ 75 (194)
T COG3963 5 LARKFDEEISFFKGWIDNPRTVGA-ILP--------SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPES 75 (194)
T ss_pred hhhhHHHHHHHHHHHhcCCceeee-ecC--------CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccc
Confidence 345566677899999887665532 111 113344566677788889999999999999999998873 4568
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c---C-CCccEEEEcccccccc--cHHHHHHHHHhccccCe
Q 022810 90 ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M---E-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDT 161 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~---~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG 161 (291)
++++|.|++......+.. +.+.++.+|+.++. . . ..||.|+|.-++-.++ ...++++.+...|.+||
T Consensus 76 L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg 150 (194)
T COG3963 76 LTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGG 150 (194)
T ss_pred eEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCC
Confidence 999999999987776654 24668899988865 1 2 6799999998887774 34679999999999999
Q ss_pred eEEEEeeccC
Q 022810 162 LLFVHHFCHK 171 (291)
Q Consensus 162 ~l~i~~~~~~ 171 (291)
.++-.+.++-
T Consensus 151 ~lvqftYgp~ 160 (194)
T COG3963 151 PLVQFTYGPL 160 (194)
T ss_pred eEEEEEecCC
Confidence 9888777643
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-09 Score=81.01 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
..-+||||||+|..+..+++.. |+..+.++|+|+.+++..++.++.++. ++..++.|+..-..+++.|+++.++++--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcCc
Confidence 6789999999999999998864 667899999999999999998888877 78999999987554589999999886522
Q ss_pred cc---------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 143 MK---------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 143 ~~---------------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
-+ -.+.++..+-.+|.|.|++++.....
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 11 14567888889999999999876543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=99.12 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHHHcCC-------CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe
Q 022810 43 TLEDAEKAMLELYCERSRL-------EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 115 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i 115 (291)
++.+.|.+.++.....+.+ ..+..+||||||.|.++..+|..+|...++|+|+....+..+.+.+...+++|+
T Consensus 320 ~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 320 SLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 5666776666555433322 346689999999999999999999999999999999999999988888888899
Q ss_pred EEEEccccCCc--cC-CCccEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 116 EIIVADISTFE--ME-ASYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 116 ~~~~~d~~~~~--~~-~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+++.|+..+. .+ +++|.|+.+++=-|.+. .+.+++.+.+.|+|||.+.+.+-
T Consensus 400 ~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 400 LLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 99988875432 23 78999999887655532 36799999999999999988653
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-08 Score=77.20 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=75.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--C
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~ 129 (291)
+.+.+.+...++.+|||||||.|. ++..|++. |.+|+++|+++..++.++++ .+.++.+|+.+.... +
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHh
Confidence 344555555567899999999996 88888876 89999999999987776553 367899999987666 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.+|+|.+..+- ++....+.++.+. -|.-++|...+.+.
T Consensus 77 ~a~liysirpp---~el~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 77 NAKLIYSIRPP---RDLQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred cCCEEEEeCCC---HHHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 89999987543 3334444444442 35567776554443
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=85.22 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCcc----CCCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~----~~~~D~v 134 (291)
..+.+||||.||.|..........|. .+|...|.|+..++..++.+++.|+.++ +|.++|+.+... ...++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 45779999999999998888888876 6899999999999999999999999765 999999987421 1457999
Q ss_pred EEccccccccc---HHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKN---YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.++.++.++| ....+..+.+++.|||+++.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 99999999977 455788899999999998774
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=93.22 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~~--~~~D~v 134 (291)
.+.+.+||.||+|.|..+..+.+..+..++++||+++.+++.+++.+...+ .++++++.+|...+... ++||+|
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 345679999999999999999876556789999999999999998875431 25799999999885432 789999
Q ss_pred EEcccccc--c-c---cHHHHHH-HHHhccccCeeEEEEe
Q 022810 135 YSIEMFEH--M-K---NYQNLLK-KISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~--~-~---~~~~~l~-~~~~~L~pgG~l~i~~ 167 (291)
++...-.. . . -..++++ .+++.|+|||++++..
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99742110 0 0 1356887 8999999999988754
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=93.64 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=90.8
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEEE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~v~~ 136 (291)
+..++.+|||++||.|.=+.++++... ...++++|+++..++.+++++...|+.++.+...|...+. .+..||.|++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 667899999999999999999998763 3589999999999999999999999988999999987653 2367999997
Q ss_pred ccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 137 IEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~------~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..+-... + -..++|..+.+.|||||+|+-++.+.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 6543211 1 13668999999999999998877653
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-09 Score=89.87 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=80.0
Q ss_pred CCCEEEEEcCCcch----HHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHH------------------HH-----hC
Q 022810 63 DGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQC------------------RV-----LE 111 (291)
Q Consensus 63 ~~~~vLDiGcG~G~----~~~~l~~~~p----~~~v~~vD~s~~~~~~a~~~~------------------~~-----~~ 111 (291)
+..+|+..||.+|. ++..+.+..+ ..+|+|+|+|+.+++.|++-. .. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999995 3444444322 368999999999999998741 00 01
Q ss_pred -------C-CCeEEEEccccCCcc--CCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEE
Q 022810 112 -------L-QNVEIIVADISTFEM--EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 112 -------~-~~i~~~~~d~~~~~~--~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+ +.|+|...|+.+.+. .+.||+|+|.+++.|+ +....+++++.+.|+|||+|++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1 358899999987543 3789999999999998 45788999999999999998774
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=79.57 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=89.4
Q ss_pred HHHHHHcCC--CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--c
Q 022810 53 ELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--M 127 (291)
Q Consensus 53 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~ 127 (291)
+.++..+.. -.+.++||+-+|+|.++...+++. ..+++.||.+...+..+++|.+..+. .+.+++..|+.... .
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 344454443 478999999999999999999985 56899999999999999999999885 47889999988542 2
Q ss_pred C--CCccEEEEccccccc-ccHHHHHHH--HHhccccCeeEEEEeecc
Q 022810 128 E--ASYDRIYSIEMFEHM-KNYQNLLKK--ISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~--~~~D~v~~~~~l~~~-~~~~~~l~~--~~~~L~pgG~l~i~~~~~ 170 (291)
. ++||+|+..++++.- -+....+.. -..+|+|+|.+++.....
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2 359999999999721 222233333 357899999999976544
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-09 Score=91.99 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-------CCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVA 120 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~ 120 (291)
...+.++..+...++.+|||.+||+|.+...+.+. .+..+++|+|+++.++..++.++.-.+. .+..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 44455666667778889999999999999888763 2578999999999999999888766665 23468888
Q ss_pred cccCCccC---CCccEEEEccccccc--c-------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 121 DISTFEME---ASYDRIYSIEMFEHM--K-------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 121 d~~~~~~~---~~~D~v~~~~~l~~~--~-------------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|....+.. ..||+|++++++... . ....++..+.+.|++||++.+..|..
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 87654332 589999999987543 0 01258899999999999988877653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=80.17 Aligned_cols=93 Identities=20% Similarity=0.323 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
..|+..+-.-.+.-.|++++|+|||.|.++...+. +....|.|+|+++++++.+.+|+.+..+ ++.+.++|+.+..+.
T Consensus 34 asM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~ 111 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELK 111 (185)
T ss_pred HHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhcc
Confidence 34444454555656799999999999999965553 3346799999999999999999998877 789999999998776
Q ss_pred -CCccEEEEccccccc
Q 022810 129 -ASYDRIYSIEMFEHM 143 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~ 143 (291)
+.||.++.++++..-
T Consensus 112 ~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 112 GGIFDTAVINPPFGTK 127 (185)
T ss_pred CCeEeeEEecCCCCcc
Confidence 889999999988544
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.3e-09 Score=82.27 Aligned_cols=110 Identities=25% Similarity=0.253 Sum_probs=85.8
Q ss_pred HHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhC--------C--CCeE
Q 022810 51 MLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE--------L--QNVE 116 (291)
Q Consensus 51 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~--------~--~~i~ 116 (291)
+...+++.+. +.||.+.||+|+|+|.++..++... ++...+|||.-++.++.+++++.+.- + .++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3444455554 6799999999999999999888653 45556999999999999999887543 1 3588
Q ss_pred EEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 117 IIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 117 ~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
++.+|......+ .+||.|.+-... .+..+++...|+|||.+++-
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 999999887666 899999998543 44566777889999998884
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=84.24 Aligned_cols=101 Identities=16% Similarity=0.263 Sum_probs=65.9
Q ss_pred HHHHHHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 52 LELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
++.+++.+... ++..|-|+|||.+.++..+.+ +.+|...|+.+. +-.++.+|+...|.+ +
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---------------STTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---------------CCCEEEecCccCcCCCC
Confidence 45566655543 457899999999999866542 468999998653 223678999999888 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+.|++|+..+|.. .+...++.++.|+|||||.|.|.....+
T Consensus 122 svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 122 SVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp -EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred ceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 9999999877744 4789999999999999999999877543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=89.81 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
+.+|||+.||+|..++.++.+.++ .+|+++|+++.+++.+++|++.++++++.++++|+...... .+||+|...+ +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 468999999999999999987533 58999999999999999999998887789999999876433 6799999976 4
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
..+..++..+.+.+++||.++++..+
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEecc
Confidence 23457899999999999999997433
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=86.37 Aligned_cols=106 Identities=18% Similarity=0.123 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~~--~~~D~v~ 135 (291)
+...+||-||.|.|..++.+.+..+-.+++.||+++..++.+++.+.... .++++++..|..++... .+||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 33469999999999999999988766899999999999999999887654 35899999999886543 5799999
Q ss_pred Ecccccccc----cHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+...=..-+ ....+++.+++.|+++|+++...
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 876433101 23789999999999999998873
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=88.89 Aligned_cols=114 Identities=25% Similarity=0.367 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022810 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~ 124 (291)
......+++.+++.++..++ +|||+-||.|.++..+++. ..+|+|||.++.+++.|+++++.++++|++|+.+++++
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 44556788888888887766 8999999999999999987 67999999999999999999999999999999987765
Q ss_pred Ccc----------------C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 125 FEM----------------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 ~~~----------------~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.. . ..+|+|+..++=..+. ..+++.+.+ +.-+++++
T Consensus 256 ~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~~~~~---~~~ivYvS 309 (352)
T PF05958_consen 256 FAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--EKVIELIKK---LKRIVYVS 309 (352)
T ss_dssp CCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--HHHHHHHHH---SSEEEEEE
T ss_pred hhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--HHHHHHHhc---CCeEEEEE
Confidence 321 1 2589999988766554 234444433 34455554
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-09 Score=86.49 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
....++|||||.|....++.... -.+++-+|.|..|++.++.. ...++ .+....+|-+.+++. +++|+|+++.++|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence 45689999999999999998874 45799999999998877642 22333 456677888888777 8999999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
++.+.+..+.+++..|||+|.++-+..+-.+
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 9999999999999999999998887665544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.8e-09 Score=81.77 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=56.6
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---CC-ccEEEEcccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---AS-YDRIYSIEMF 140 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~---~~-~D~v~~~~~l 140 (291)
.|+|+.||.|..++.+|+. ..+|++||+++..++.|+.|++..|+ ++|.++++|+.+.... .. +|+|+++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 6999999999999999988 56999999999999999999999997 5899999999886433 12 8999998864
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=84.03 Aligned_cols=89 Identities=19% Similarity=0.376 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.....++..|||||+|.|.++..|+++ +.+|+++|+++.+++..++... ..++++++.+|+.....+
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 345778888888888999999999999999999998 7889999999999998888765 234899999999998877
Q ss_pred C--CccEEEEccccc
Q 022810 129 A--SYDRIYSIEMFE 141 (291)
Q Consensus 129 ~--~~D~v~~~~~l~ 141 (291)
. .++.|++|.+.+
T Consensus 92 ~l~~~~~vVaNlPY~ 106 (259)
T COG0030 92 SLAQPYKVVANLPYN 106 (259)
T ss_pred hhcCCCEEEEcCCCc
Confidence 4 789999998774
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=86.19 Aligned_cols=110 Identities=18% Similarity=0.106 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--C-CccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--A-SYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~~--~-~~D~ 133 (291)
.+.+.+||-||.|.|..+..+.+..+..++++||+++..++.+++.+.... -++++++.+|...+... + +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 346789999999999999999876445799999999999999999776532 24899999999875433 5 8999
Q ss_pred EEEcccccccc----cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+....-...+ -..++++.+++.|+|||++++...++
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 99865432111 13689999999999999999876443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-08 Score=85.80 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------C-------E
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------C-------K 89 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~--------------------------------~-------~ 89 (291)
..+...++...+..++..++|.-||+|++++..+...++ + .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 455666777778888889999999999999998877421 1 3
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccccccc-c-------cHHHHHHHHHhcccc
Q 022810 90 ITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM-K-------NYQNLLKKISKWMKE 159 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~-~-------~~~~~l~~~~~~L~p 159 (291)
++|+|+++.+++.|+.|+...|+ +.|+|.++|+..+..+ +.+|+||||++..-- . -+..+.+.+++.++-
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence 77999999999999999999999 5699999999998877 899999999987322 1 133455556666666
Q ss_pred CeeEEEEee
Q 022810 160 DTLLFVHHF 168 (291)
Q Consensus 160 gG~l~i~~~ 168 (291)
-+..++.+.
T Consensus 337 ws~~v~tt~ 345 (381)
T COG0116 337 WSRYVFTTS 345 (381)
T ss_pred CceEEEEcc
Confidence 677766543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=83.44 Aligned_cols=89 Identities=16% Similarity=0.267 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~ 128 (291)
..++.++++.+++++..|||+|.|||.++..+.+. +.+|+++|+++.|+....++.+.... .+.+++.+|+...+.
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 45677888899999999999999999999999998 89999999999999999998876655 469999999988654
Q ss_pred CCccEEEEccccc
Q 022810 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~v~~~~~l~ 141 (291)
..||.++++.+..
T Consensus 122 P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 122 PRFDGCVSNLPYQ 134 (315)
T ss_pred cccceeeccCCcc
Confidence 3689999987664
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=87.66 Aligned_cols=107 Identities=25% Similarity=0.292 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
.+|.+|||.-+|.|.+++.++... ...|+++|+||.+++.+++|++.+++.+ +..+++|..+.... ..+|-|+++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 459999999999999999999873 2349999999999999999999999954 89999999998776 88999999865
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
- +...++..+.+.+++||++.+....++..
T Consensus 266 ~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred C----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 3 55678888889999999998877766543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.3e-08 Score=80.54 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=94.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~- 128 (291)
+..++..+.+.||.+|||-|+|+|.++.++++.. |..+++.+|......+.|++.+++.++ +++++.+-|+...-+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 5566777889999999999999999999999874 678999999999999999999999999 5899999999875443
Q ss_pred --CCccEEEEcccccccccHHHHHHHHHhccccCe-eEEEEeecc
Q 022810 129 --ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHHFCH 170 (291)
Q Consensus 129 --~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG-~l~i~~~~~ 170 (291)
..+|.|+.. ++.+..++..+.++||.+| +++-..|+.
T Consensus 174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 578888774 5667778888888999877 555545544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=83.68 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC---
Q 022810 50 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST--- 124 (291)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~--- 124 (291)
..+..+++..++ .++.+|||+|||+|.++..+++.. ..+|+++|+++.++... .+.. .++ .+...|+..
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~---l~~~--~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEK---LRQD--ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHH---HhcC--CCeeEeecCCcccCCH
Confidence 445666666654 467899999999999999999872 46899999999887651 1111 122 223334432
Q ss_pred --CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 125 --FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 --~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
...+ ..+|+++++. ...+..+.+.|+| |.+++
T Consensus 135 ~~~~~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL--------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred hHcCCCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEE
Confidence 2212 3556555543 2358889999999 76544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=86.93 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.+++.+++.+...++..++|.+||.|.++..+++..+ ..+|+|+|.++.+++.+++++.. .++++++++|+.++...
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH
Confidence 4667888888888889999999999999999999874 58999999999999999988765 45899999999876321
Q ss_pred --C---CccEEEEcccc
Q 022810 129 --A---SYDRIYSIEMF 140 (291)
Q Consensus 129 --~---~~D~v~~~~~l 140 (291)
. ++|.|++..-.
T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHcCCCccCEEEECCCc
Confidence 2 79999987643
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.6e-08 Score=79.67 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-------HhCC--CCeEEEE
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL--QNVEIIV 119 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~-------~~~~--~~i~~~~ 119 (291)
...+..+++.+++.++...+|||||.|......+...+-.+++|||+.+...+.|+.... ..+. .++.+..
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 345666778888999999999999999998888876644469999999998887765433 2233 3688889
Q ss_pred ccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 120 ADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 120 ~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+|+.+.... ...|+|++++... -++....+.+....||+|.+++-
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 998764321 4579999987652 24555666777778888887653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.9e-08 Score=92.52 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHC----C-------------------------------------
Q 022810 49 KAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY----S------------------------------------- 86 (291)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~----p------------------------------------- 86 (291)
..+...++...+. .++..++|.+||+|++.+..+... |
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3445556666665 567899999999999998887531 1
Q ss_pred -CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC---CCccEEEEccccccc----ccHHHHHHHHHhcc
Q 022810 87 -NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKISKWM 157 (291)
Q Consensus 87 -~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~---~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L 157 (291)
..+++|+|+++.+++.|+.|+...|+. .+.+.++|+.++..+ +++|+|++|+++..- .+...+.+.+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 136999999999999999999999984 589999999887543 469999999987433 23344555554444
Q ss_pred c---cCeeEEEEeecc
Q 022810 158 K---EDTLLFVHHFCH 170 (291)
Q Consensus 158 ~---pgG~l~i~~~~~ 170 (291)
+ +|+.+++.+...
T Consensus 335 k~~~~g~~~~llt~~~ 350 (702)
T PRK11783 335 KQQFGGWNAALFSSSP 350 (702)
T ss_pred HHhCCCCeEEEEeCCH
Confidence 4 888887766543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-07 Score=82.31 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=92.8
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CC
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----AS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p--~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~ 130 (291)
..++..+|.+|||++++.|+=+.++++..+ +..|+++|.++.-+...+++++..|+.++..+..|....... ++
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCc
Confidence 456788999999999999999999998864 356799999999999999999999998888888887754322 35
Q ss_pred ccEEEEccccccc------cc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||.|++..+-... ++ +.++|..+.+.|||||.|+.++.+.
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 9999987643221 11 4679999999999999999887754
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-08 Score=81.30 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=76.3
Q ss_pred HHHHHHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 52 LELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
++.+++.+... ....|-|+|||.+.++. .. ...|+.+|+.+. +-+++.+|+.+.+.+ +
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV---------------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeecC---------------CCceeeccccCCcCccC
Confidence 45556655443 45678899999988776 22 457999998543 456788999998887 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+.|++++..++. ..+...++.++.|+|+|||.++|.....
T Consensus 228 svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 228 SVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred cccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhh
Confidence 999999877663 3588999999999999999999987654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.8e-08 Score=81.22 Aligned_cols=101 Identities=11% Similarity=0.006 Sum_probs=77.7
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCccCCCccEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+..+.+.+||=||.|.|..++.+.+. | .+|+.||+++.+++.+++.+... +. ++++++.. +.+. ..++||+|
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVI 143 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLI 143 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEE
Confidence 34567899999999999999999976 4 49999999999999999855432 12 46777652 2211 12689999
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++... ....+++.+++.|+|||+++.+.-
T Consensus 144 IvDs~-----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 144 ICLQE-----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEcCC-----CChHHHHHHHHhcCCCcEEEECCC
Confidence 99854 236888999999999999988644
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-07 Score=74.39 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE- 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~- 126 (291)
..+..+++.+ .+.++||||.=+|..+..+|...| +.+|+++|+++...+.+.+..+..|. .+|+++++++.+..
T Consensus 63 ~fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 63 QFLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 3445555443 477999999999999999998875 57999999999999999999999988 47999999887632
Q ss_pred -----c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 -----M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 -----~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .++||+++...- -.++...+.++.+++|+||++++..
T Consensus 140 ~l~~~~~~~tfDfaFvDad---K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVDAD---KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEEccc---hHHHHHHHHHHHhhcccccEEEEec
Confidence 1 278999998642 2455688999999999999998854
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-08 Score=81.67 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=83.2
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC---CCc
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~~---~~~ 131 (291)
.+..+.+.+|||-+.|-|..++..+++ |+ +|+.++.++..++.|.-|==..++ .+++++.+|+.+.... ++|
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 345567999999999999999999988 66 999999999988877643222222 2579999999876433 789
Q ss_pred cEEEEcccccccc---cHHHHHHHHHhccccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMK---NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|+-.++-.... -..++.+++.++|||||.++--+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 9999877543331 24679999999999999986544
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=77.34 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=92.3
Q ss_pred hHHHHHhhCCCCCcccc---------ccCCCCCCHHHHHHHHHHHHHHHcCCC-CCCEEEEEcCCc--chHHHHHHHH-C
Q 022810 19 TSFFKLVLGKYFKYSCC---------YFSDASKTLEDAEKAMLELYCERSRLE-DGHTVLDVGCGW--GSLSLYIAQK-Y 85 (291)
Q Consensus 19 ~~~y~~~~~~~~~y~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~--G~~~~~l~~~-~ 85 (291)
+..|+.++|.+-+|... .+. ....+....+..+...++.+.-. .-...||||||. -.+...+++. .
T Consensus 15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~P-~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~ 93 (267)
T PF04672_consen 15 ARVYDYLLGGKDNFAVDREAAERLLAAAP-EIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA 93 (267)
T ss_dssp HHHHHHHCT-SS--HHHHHHHHHHHHHST-THHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-
T ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC
Confidence 67899999987777331 000 11223344445555555554444 446899999993 3456666554 6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C---CCcc-----EEEEcccccccc---cHHHHH
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E---ASYD-----RIYSIEMFEHMK---NYQNLL 150 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~---~~~D-----~v~~~~~l~~~~---~~~~~l 150 (291)
|.++|+.||.++-.+..++..+....-....++++|+.+... + +-+| .|++..++|+++ ++..++
T Consensus 94 P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv 173 (267)
T PF04672_consen 94 PDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIV 173 (267)
T ss_dssp TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHH
T ss_pred CCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHH
Confidence 899999999999999999888766542238899999987421 1 2333 577888999984 588999
Q ss_pred HHHHhccccCeeEEEEeeccCC
Q 022810 151 KKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 151 ~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+.++..|.||++|.++..+...
T Consensus 174 ~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 174 ARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp HHHHCCS-TT-EEEEEEEB-TT
T ss_pred HHHHHhCCCCceEEEEecCCCC
Confidence 9999999999999998887654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.7e-08 Score=86.14 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=98.7
Q ss_pred HHHHHhhCCCCCcccc-ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHH
Q 022810 20 SFFKLVLGKYFKYSCC-YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT 98 (291)
Q Consensus 20 ~~y~~~~~~~~~y~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~ 98 (291)
-.++.+++-++.+|.+ +|. ......+.+...+-++++++++..+||+.||+|.++..+++. -.+|+||++++.
T Consensus 343 ~I~E~l~~ltF~iSp~AFFQ----~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 343 YITESLLGLTFRISPGAFFQ----TNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPD 416 (534)
T ss_pred EEEeecCCeEEEECCchhhc----cCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChh
Confidence 3445555656666664 443 223333445556667788889999999999999999999986 679999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEccccCCccC------CCcc-EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 99 QKEFIEEQCRVLELQNVEIIVADISTFEME------ASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 99 ~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~------~~~D-~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++.|+.++..+|+.|.+|+++-+++.-.. .+=+ +++...+=..+ ...+++.+.+.-++--.+++++-
T Consensus 417 aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl--h~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 417 AVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL--HMKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred hcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcccc--cHHHHHHHHhccCccceEEEEcC
Confidence 999999999999999999999977664322 2334 44444433211 24566666665556666666543
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-07 Score=79.25 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=79.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 143 (291)
-...+|+|.|.|..+..+..++| ++-+++.+...+..+..... . .|+.+.+|+.+. .| +-|+|++.+++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~P-~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-TP-KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-C---Ccceeccccccc-CC-CcCeEEEEeecccC
Confidence 36889999999999999999877 46777777776666555543 2 478889999886 33 34799999999999
Q ss_pred --ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 144 --KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 144 --~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++..++|+++++.|+|||.+++.....
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 457789999999999999999877643
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=73.69 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=87.0
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+...-..-.+++|||+|+|+|..++..++.. ...|+..|+.+.....++-|++.+++ ++.+...|.-. .+..+|++
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~ 146 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLL 146 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCcceeEE
Confidence 3333344578999999999999999988773 45799999999999999999998887 78999998877 34689999
Q ss_pred EEcccccccccHHHHHHHHHhcccc-CeeEEEEeeccCCc
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKE-DTLLFVHHFCHKTF 173 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~~~ 173 (291)
++..+++.-+....++. +...|+. |-.+++.++.+...
T Consensus 147 LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 147 LAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred EeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence 99998877666677777 4444544 44566666655433
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-06 Score=75.57 Aligned_cols=146 Identities=8% Similarity=0.017 Sum_probs=94.3
Q ss_pred hhcC-CChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC----CC
Q 022810 13 QHYE-LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----SN 87 (291)
Q Consensus 13 ~~yd-~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----p~ 87 (291)
-.|| .+.+.|+.+......| .... =.+........+++.+ .++..|+|+|||.|.-+..|.+.. ..
T Consensus 34 ~~YD~~Gs~LFe~It~lpEYY-----ptr~--E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~ 104 (319)
T TIGR03439 34 LLYDDEGLKLFEEITYSPEYY-----LTND--EIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKS 104 (319)
T ss_pred hhhcchHHHHHHHHHcCCccC-----ChHH--HHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCC
Confidence 4454 6677787776433323 2110 0111122233444433 467799999999999877766543 24
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCCCeE--EEEccccCC----cc---CCCccEEEEcc-cccccc--cHHHHHHHHHh
Q 022810 88 CKITGICNSKTQKEFIEEQCRVLELQNVE--IIVADISTF----EM---EASYDRIYSIE-MFEHMK--NYQNLLKKISK 155 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~~i~--~~~~d~~~~----~~---~~~~D~v~~~~-~l~~~~--~~~~~l~~~~~ 155 (291)
..++++|+|..+++.+.+++.....+.+. -+++|+.+. +. .....+++..+ ++..++ ....+|+++++
T Consensus 105 ~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 105 VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 68999999999999999988744444444 488888653 11 13356666554 676663 34579999999
Q ss_pred -ccccCeeEEEEe
Q 022810 156 -WMKEDTLLFVHH 167 (291)
Q Consensus 156 -~L~pgG~l~i~~ 167 (291)
.|+|||.|++..
T Consensus 185 ~~l~~~d~lLiG~ 197 (319)
T TIGR03439 185 TALSPSDSFLIGL 197 (319)
T ss_pred hhCCCCCEEEEec
Confidence 999999988854
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=76.25 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=91.4
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~ 133 (291)
.+...++.+|||++++.|+=+.++++... ...++++|+++..+...+++++..|..++.....|....... ..||.
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 35677899999999999999999998874 579999999999999999999999998888888888776322 45999
Q ss_pred EEEccccccc------cc----------------HHHHHHHHHhcc----ccCeeEEEEeecc
Q 022810 134 IYSIEMFEHM------KN----------------YQNLLKKISKWM----KEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~------~~----------------~~~~l~~~~~~L----~pgG~l~i~~~~~ 170 (291)
|+...+-... ++ ..++|+.+.+.+ ||||+++.++.+.
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 9986643211 11 466999999999 9999998877654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-06 Score=75.47 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~ 127 (291)
+.+..+-..+....+.+|||+|||+|..+-.+...++ -.+++++|.|+.+++.++..+...... ...+......+...
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 3444554455445677999999999998877777665 347999999999999998877654321 11111111111111
Q ss_pred CCCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 128 EASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
-...|+|++.++|..+++ ...+++.+.+.+++ .|++..++.+
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 134599999999988865 33466666555555 7777776543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-08 Score=88.10 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCC----CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEc---CCHHHHHHHHHHHHHhCCCCeEEEEcc
Q 022810 49 KAMLELYCERSRL----EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC---NSKTQKEFIEEQCRVLELQNVEIIVAD 121 (291)
Q Consensus 49 ~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD---~s~~~~~~a~~~~~~~~~~~i~~~~~d 121 (291)
...++.+.+.+.. ..-..+||+|||+|.++.+|.++ +..+..+- ..+.+++.|. +.|++ ..+-..-
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfal----eRGvp-a~~~~~~ 171 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFAL----ERGVP-AMIGVLG 171 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhh----hcCcc-hhhhhhc
Confidence 3444444444433 22346899999999999999987 55444433 3334444443 34442 1111122
Q ss_pred ccCCccC-CCccEEEEccccccc-ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 122 ISTFEME-ASYDRIYSIEMFEHM-KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 122 ~~~~~~~-~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
...++++ +.||+|.|..++... ++-.-+|-++.|+|+|||+++++.+..
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 3456766 899999998876544 333558889999999999999876643
|
; GO: 0008168 methyltransferase activity |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=76.49 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=69.2
Q ss_pred HHHHHHHHcC-CC--CCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 51 MLELYCERSR-LE--DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~-~~--~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
++..+.+..+ +. ++.+|||+||++|+++..+.++. +..+|+|+|+.+. ....++.++++|+.+..
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEE
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhh
Confidence 4556666666 33 35899999999999999999885 4579999999876 11235666666654421
Q ss_pred ---------cC--CCccEEEEccccccc-----------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 ---------ME--ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ---------~~--~~~D~v~~~~~l~~~-----------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.. .++|+|+|....... .-....+.-+.+.|+|||.+++..+.
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 489999998833221 11233455556789999998887654
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=82.30 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC--------CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----c-cC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----E-ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-----~-~~ 128 (291)
...+|||.|||+|.+...++...+ ...++|+|+++..+..++.++...+.-.+.+...|.... . ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999998887643 157899999999999999888766521344555553321 1 11
Q ss_pred CCccEEEEccccccccc----------------------------------------------HHHHH-HHHHhccccCe
Q 022810 129 ASYDRIYSIEMFEHMKN----------------------------------------------YQNLL-KKISKWMKEDT 161 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~----------------------------------------------~~~~l-~~~~~~L~pgG 161 (291)
+.||+|++|+++.-... +..++ +.+.+.|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 58999999998764310 01133 56788999999
Q ss_pred eEEEEeecc
Q 022810 162 LLFVHHFCH 170 (291)
Q Consensus 162 ~l~i~~~~~ 170 (291)
++.+..|..
T Consensus 191 ~~~~I~P~s 199 (524)
T TIGR02987 191 YVSIISPAS 199 (524)
T ss_pred EEEEEEChH
Confidence 998877754
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=73.89 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=81.0
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc--
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH-- 142 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~-- 142 (291)
..+.|+|+|+|.++...+.. ..+|++++.+|...+.|.+|..-.|..+++++.+|+.+..+ +..|+|+|-..=..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 68999999999999988876 67999999999999999999888888899999999999877 56799988542111
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+.....+..+...|+-++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 14456688888889998888654
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-06 Score=64.40 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHH-----HCCCCEEEEEcCCHHHHHHHHHHHHHhC--C-CCeEEEEccccCCccCCCcc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQ-----KYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~-----~~p~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~i~~~~~d~~~~~~~~~~D 132 (291)
..+..+|+|+|||.|.++..++. . ++.+|++||.++..++.+.++.++.+ . .++.+..++..+.......+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 35788999999999999999998 4 58899999999999999999988877 3 45777777766543345667
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++....-..+ .+.+++...+ |+-..++.
T Consensus 102 ~~vgLHaCG~L--s~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDL--SDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccch--HHHHHHHHHH---cCCCEEEE
Confidence 77775443322 2445555544 55554443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-06 Score=72.63 Aligned_cols=100 Identities=17% Similarity=0.292 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++..|||||+|.|.++..+.+. +.+++++|+++..++..++... ..++++++.+|+.++...
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccH
Confidence 456778888888888999999999999999999988 5899999999999888887665 224899999999987655
Q ss_pred C----CccEEEEcccccccccHHHHHHHHHh
Q 022810 129 A----SYDRIYSIEMFEHMKNYQNLLKKISK 155 (291)
Q Consensus 129 ~----~~D~v~~~~~l~~~~~~~~~l~~~~~ 155 (291)
. ....|+++.+. ++. ..++.++..
T Consensus 92 ~~~~~~~~~vv~NlPy-~is--~~il~~ll~ 119 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NIS--SPILRKLLE 119 (262)
T ss_dssp GHCSSSEEEEEEEETG-TGH--HHHHHHHHH
T ss_pred HhhcCCceEEEEEecc-cch--HHHHHHHhh
Confidence 3 55688888776 332 456666655
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-06 Score=67.76 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=77.0
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~ 131 (291)
+.+.+.+|.+||-+|..+|....+++... +...|++|+.|+.........+++. +||-.+..|+..... -+..
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--E
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccc
Confidence 34567899999999999999999998874 4679999999998877776666555 389999999986431 1689
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|++.-. .-.+..-++.++...||+||.+++..-
T Consensus 145 DvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 145 DVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 99998643 223334567778889999999988653
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=71.97 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=74.5
Q ss_pred HHHHHHcCCCCCC--EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------C--C-CCeEEEEcc
Q 022810 53 ELYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------E--L-QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~------~--~-~~i~~~~~d 121 (291)
+.+++.++++++. +|||+-+|+|..+..++.. |++|+++|-++......+.++... + + .+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 5667777888887 9999999999999999988 889999999999999998888764 2 2 468999999
Q ss_pred ccCCccC--CCccEEEEccccccc
Q 022810 122 ISTFEME--ASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~~--~~~D~v~~~~~l~~~ 143 (291)
..++... .+||+|++.+++.+-
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCC
Confidence 8775432 579999999988664
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.8e-06 Score=63.28 Aligned_cols=104 Identities=22% Similarity=0.344 Sum_probs=73.5
Q ss_pred EEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--CccCC--CccEEEEccccc
Q 022810 67 VLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEA--SYDRIYSIEMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~--~~~~~--~~D~v~~~~~l~ 141 (291)
++|+|||+|... .+....+. ..++++|+++.++..++......+...+.+...|... .+... .||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 44443222 4899999999999885544433211116788888776 44443 799994444444
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+.. ....+..+.+.|+|+|.+++.......
T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 788999999999999999887776543
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-07 Score=71.34 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCCeEEEEccccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---LQNVEIIVADIST 124 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~---~~~i~~~~~d~~~ 124 (291)
+.+...+++..+...+.+||++|.| +|..+..+|...|...|...|-++.++...++....+. ++++....-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 4444455554444567899999999 56666667777788899999999998887776554332 2233333333322
Q ss_pred Cc--cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 125 FE--ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 125 ~~--~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
-. .. ..||+|++...+..-+....+++.++..|+|.|..++..|
T Consensus 95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 21 12 5899999999886666678899999999999999777554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-05 Score=68.81 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---hC---------------------------
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LE--------------------------- 111 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~---~~--------------------------- 111 (291)
....+||--|||.|.++..++.+ |..+.|.|.|--|+-...-.+.. .+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34679999999999999999988 89999999999987554432211 00
Q ss_pred ----------CCCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeE
Q 022810 112 ----------LQNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 112 ----------~~~i~~~~~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 163 (291)
..++....+|+.+.-.+ ++||+|+...-+...++....++.+.++|||||+.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence 02456666777664332 58999999988877788999999999999999954
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=73.67 Aligned_cols=106 Identities=24% Similarity=0.284 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---------------------------C-C
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------------------------L-Q 113 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~---------------------------~-~ 113 (291)
..+.++||||||+-..-..-+..+ ..+++..|.++..++..++.+++.+ + .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 357799999999854433323222 3479999999998887766443321 1 1
Q ss_pred Ce-EEEEccccCCccC-------CCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEee
Q 022810 114 NV-EIIVADISTFEME-------ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 114 ~i-~~~~~d~~~~~~~-------~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.| .++.+|+.+.++- .+||+|++..+++.. +.+...++++.++|||||.|++...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 13 3777888774321 359999999988776 4467799999999999999998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-06 Score=66.25 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=53.4
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.+||+|||.|..+..+++..|..+++++|+++.+.+.++++++.++.+++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999999887779999999999999999999888876788888877653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-06 Score=69.91 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~D~v~~~~~ 139 (291)
..++|||||=+..+...- .+-..|+.||+++. .-.+.+.|+.+.+.+ ++||+|.++.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 369999999765544432 23457999999874 233567888776543 78999999999
Q ss_pred ccccccHH---HHHHHHHhccccCee-----EEEEeeccC
Q 022810 140 FEHMKNYQ---NLLKKISKWMKEDTL-----LFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~---~~l~~~~~~L~pgG~-----l~i~~~~~~ 171 (291)
+.+++++. +.++++.+.|+|+|. |++..|.+.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 99998764 599999999999999 888877554
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-05 Score=67.91 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCEEEEEcCCcchHHHH-HHHH-CCCCEEEEEcCCHHHHHHHHHHHH-HhCC-CCeEEEEccccCCccC-CCccEEEEcc
Q 022810 64 GHTVLDVGCGWGSLSLY-IAQK-YSNCKITGICNSKTQKEFIEEQCR-VLEL-QNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~-l~~~-~p~~~v~~vD~s~~~~~~a~~~~~-~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
+.+|+=||||.=-++.. ++++ .++..|+++|+++.+++.+++... ..++ .+++|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 45999999997665544 4443 356789999999999999998877 3444 4799999999876655 7899998876
Q ss_pred ccc-ccccHHHHHHHHHhccccCeeEEEE
Q 022810 139 MFE-HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~-~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
... .-++..+++.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 543 2257889999999999999998885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-07 Score=71.97 Aligned_cols=99 Identities=12% Similarity=0.188 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-----CCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-----ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-----~~~D~v~~ 136 (291)
....|+|.-||.|+.++.++.+ +..|++||+++..+..|+.|++-.|+ ++|+|+++|+.++... ..+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 3568999999999999999988 67999999999999999999999999 5899999999875422 34667777
Q ss_pred cccccccccHHHHHHHHHhccccCeeE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l 163 (291)
.++...-.-...-+-.+...++|.|.-
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~~~ 198 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMGTK 198 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhHHH
Confidence 776544444444555566666666543
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.5e-07 Score=64.79 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=44.4
Q ss_pred EEEcCCcchHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC-CCccEEEEcccc
Q 022810 68 LDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEMF 140 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~-~~~D~v~~~~~l 140 (291)
||||+..|..+..+++..+. .+++++|..+. .+.+++..++.++ ++++++.++..+.. .. +++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999999988876532 37999999995 3334444444445 47999999987642 22 68999999763
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEe
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|..+.....++.+.+.|+|||++++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222456678888999999999998864
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-06 Score=69.90 Aligned_cols=146 Identities=17% Similarity=0.225 Sum_probs=94.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
.+.++||+|+|.|..+..++..+ .+|++.++|..|....++ .+. ++- -..++.+ ..-++|+|.|.+.+..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~y-nVl-~~~ew~~--t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNY-NVL-TEIEWLQ--TDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCC-cee-eehhhhh--cCceeehHHHHHHHHh
Confidence 45799999999999999998773 579999999998766543 333 211 1112221 1247999999999988
Q ss_pred cccHHHHHHHHHhcccc-CeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCCc
Q 022810 143 MKNYQNLLKKISKWMKE-DTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKH 221 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (291)
.-++-.+++.++.+|+| +|.+++.-.-+- .++ .. ..++|.....+-+ .+..|..
T Consensus 182 c~~p~kLL~Di~~vl~psngrvivaLVLP~-~hY--VE----------~N~~g~~~rPdn~------------Le~~Gr~ 236 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIVALVLPY-MHY--VE----------TNTSGLPLRPDNL------------LENNGRS 236 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEEEEEecc-cce--ee----------cCCCCCcCCchHH------------HHhcCcc
Confidence 88899999999999999 898777544221 111 00 0122211111111 1233556
Q ss_pred HHHHHHHHHHHHHhcHHhHhhh
Q 022810 222 YAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 222 ~~~t~~~w~~~l~~~~~~~~~~ 243 (291)
|..-.....+.|...|+.+...
T Consensus 237 ~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 237 FEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred HHHHHHHHHHHHHhcCchhhhh
Confidence 6666667777788888887654
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.6e-06 Score=70.12 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=48.3
Q ss_pred CCEEEEEcCCcchH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CC-CCeEEEEccccCC-----ccC-CCccEE
Q 022810 64 GHTVLDVGCGWGSL-SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-EL-QNVEIIVADISTF-----EME-ASYDRI 134 (291)
Q Consensus 64 ~~~vLDiGcG~G~~-~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~i~~~~~d~~~~-----~~~-~~~D~v 134 (291)
..++||||||...+ .+..++.+ +.+++|.|+++..++.|++++..+ ++ ++|+++...-... ..+ +.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999997755 34444444 899999999999999999999998 77 4788876642221 111 689999
Q ss_pred EEcccccccc
Q 022810 135 YSIEMFEHMK 144 (291)
Q Consensus 135 ~~~~~l~~~~ 144 (291)
+|+++++.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9999998663
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=69.45 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=66.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~~ 139 (291)
..++.++|||||++|..+..+.++ +.+|++||..+- ...+... ++|.....|.....+ .+.+|.++|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l-----~~~L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM-----AQSLMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc-----CHhhhCC--CCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 358999999999999999999988 789999996552 1222222 378989998877665 478999999765
Q ss_pred ccccccHHHHHHHHHhccccC
Q 022810 140 FEHMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pg 160 (291)
..+..+.+-+.+.|..|
T Consensus 280 ----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ----cCHHHHHHHHHHHHhcC
Confidence 35667777777777555
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=68.10 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHH--HHhC---C--CCeEEEEccccCCccC--CCc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQC--RVLE---L--QNVEIIVADISTFEME--ASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~--~~~~---~--~~i~~~~~d~~~~~~~--~~~ 131 (291)
+...+||-+|.|.|.-++++.+ +| -.+++-||++|+|++.++.+. ++.+ . ++++++..|+.++... +.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4567999999999999999984 67 468999999999999999443 2221 1 4799999999887544 789
Q ss_pred cEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|.||....=..-+. ..++..-+++.|+++|.++++..++
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 99998653211111 2568888999999999999975543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-06 Score=72.25 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
..+..++|+|||.|..+. ..|.+.++|.|.+...+..+++. +. ....+|+..++.. .+||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 357899999999987653 23678899999998866655431 23 5778999988877 89999999999
Q ss_pred cccccc---HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 140 FEHMKN---YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+||+.. ...+++++.+.|+|||..++..+...
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 999943 46799999999999999888666543
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=69.27 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-- 127 (291)
.+++.+++.+...++..++|.-+|.|+++..+++..+..+|+|+|.++.+++.+++++...+ +++.+++++..++..
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHL 85 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHH
Confidence 46778888888888899999999999999999998766899999999999999999876543 479999999887531
Q ss_pred ---C-CCccEEEEcccc
Q 022810 128 ---E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ---~-~~~D~v~~~~~l 140 (291)
. .++|.|+.+.-+
T Consensus 86 ~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 86 DELLVTKIDGILVDLGV 102 (305)
T ss_pred HhcCCCcccEEEEeccC
Confidence 2 468999887644
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-05 Score=62.01 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=82.6
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCcc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~D 132 (291)
+.+++.++.+||=+|.-+|+...+++...+...+++|+.|+.........+.+. +|+-.+..|+..... -+..|
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhccccc
Confidence 345678999999999999999999998876678999999999988777777665 378889999987431 16789
Q ss_pred EEEEcccccccccHHH-HHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMKNYQN-LLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~-~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+..-+ -+++.+ +..++...||+||.+++..
T Consensus 148 viy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 148 VIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 8887522 144444 6667899999999877754
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00016 Score=60.01 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~v~~~~ 138 (291)
-.|++||-+|-.--. ++.++...+..+|+.+|+++..++..++.+++.|+ +|+.+..|+.+..++ ++||+++..+
T Consensus 43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE--
T ss_pred ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcCCCEEEeCC
Confidence 458899999966443 33444444578999999999999999999999999 599999999884333 8999999988
Q ss_pred cccccccHHHHHHHHHhccccCe-eEEEE
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDT-LLFVH 166 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG-~l~i~ 166 (291)
+. .++....++.+....||..| ..++.
T Consensus 121 Py-T~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 PY-TPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -S-SHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred CC-CHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 75 55677889999999998766 44443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-05 Score=62.73 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEc
Q 022810 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVA 120 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~ 120 (291)
|.......++...+.+. .+|.+||++|-|-|.....+.+.- ..+=+.++..+..++..+ +.|. .|+....+
T Consensus 83 Mm~WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~-p~~H~IiE~hp~V~krmr----~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAP-PDEHWIIEAHPDVLKRMR----DWGWREKENVIILEG 156 (271)
T ss_pred hhhhhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcC-CcceEEEecCHHHHHHHH----hcccccccceEEEec
Confidence 33333444444444443 568899999999999988887664 455667899999665544 4444 47888888
Q ss_pred cccCCcc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 121 DISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 121 d~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
-+++... .+.||-|+-..--++-++...+.+.+-++|||+|++-+
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred chHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 8777432 27799999876556678888999999999999998754
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.1e-05 Score=66.79 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=90.5
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~v 134 (291)
+..++|.+|||.++-.|.=+.++|.... ...|++.|.+...+...+.++...|+++..+...|...++.. ++||.|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 4567999999999999998888887642 357999999999999999999999998888888898776522 589999
Q ss_pred EEcccccc--c----------c----------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEH--M----------K----------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~--~----------~----------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
....+-.. + + -..++|..+.+++++||+|+-++.+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 98665433 1 0 14668888899999999999887764
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=63.31 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-------CCCeEEEEccccCCccC----CCc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------LQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~i~~~~~d~~~~~~~----~~~ 131 (291)
....+.|||||-|.+...|+.++|..-+.|.++--..-++.++++...+ ..|+.+...+...+.+. ++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4467999999999999999999999999999999999999988887765 45677777776664322 222
Q ss_pred cEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+-.+...+--|... ...++.+..=+|++||.++..+-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 22222222222211 24577788888999999887543
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.2e-05 Score=60.15 Aligned_cols=108 Identities=21% Similarity=0.171 Sum_probs=75.7
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
++..+.++..+ .++.+|+|||+-.|+.+..++++. ++..|+++|+.|- ....++.++++|+.....
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHH
Confidence 34455555443 578999999999999999999886 2345999999774 123469999999987431
Q ss_pred -------C-CCccEEEEcccc--------ccc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 128 -------E-ASYDRIYSIEMF--------EHM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 -------~-~~~D~v~~~~~l--------~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
. .++|+|+|...= .|. .-...++.-+..+|+|||.+++..+.
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 2 457999986532 111 11234566667899999999987663
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00014 Score=62.13 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
.+++.+++.+...++...+|.--|.|+++..+.+++|. .+++|+|-++.+++.|++.....+ +++.+++.++.++..
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEA 88 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHH
Confidence 56778888889999999999999999999999999864 569999999999999999887765 389999988766431
Q ss_pred ----C-CCccEEEEc
Q 022810 128 ----E-ASYDRIYSI 137 (291)
Q Consensus 128 ----~-~~~D~v~~~ 137 (291)
. .++|.|+..
T Consensus 89 l~~~~i~~vDGiL~D 103 (314)
T COG0275 89 LKELGIGKVDGILLD 103 (314)
T ss_pred HHhcCCCceeEEEEe
Confidence 1 466766653
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.3e-05 Score=61.07 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=67.9
Q ss_pred EEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccc
Q 022810 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~ 144 (291)
|.||||--|.+..+|.+.....+++++|+++..++.|+++....++ +++++..+|..+...+ +..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 6899999999999999985445899999999999999999999997 5799999997654333 44798888765321
Q ss_pred cHHHHHHHHHhccccCeeEEEE
Q 022810 145 NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 145 ~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
-...++++....++....|+++
T Consensus 79 lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEe
Confidence 2345666665656555566554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=60.88 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.+..+|+|||||.=-++.......|+..++|+|++..+++.........+. +.++...|...-+.+...|+.+..=+++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 457899999999988888887777788999999999999999999888877 6778888988776667899999877776
Q ss_pred ccc
Q 022810 142 HMK 144 (291)
Q Consensus 142 ~~~ 144 (291)
-++
T Consensus 183 ~le 185 (251)
T PF07091_consen 183 CLE 185 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=59.81 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=76.4
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-
Q 022810 52 LELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~- 128 (291)
+...++...+ .++..+||+|+.||.++..+.++. ..+|+++|....++..-.+ .. ++ +.....|+..+...
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR---~d--~rV~~~E~tN~r~l~~~~ 140 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR---ND--PRVIVLERTNVRYLTPED 140 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh---cC--CcEEEEecCChhhCCHHH
Confidence 3444444444 468899999999999999999884 5689999998877654322 11 24 44555677665433
Q ss_pred --CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 129 --ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 129 --~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+..|++++.-++. ....+|..+..+++|++-++.
T Consensus 141 ~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 141 FTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred cccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEE
Confidence 5789999988774 447889999999999998655
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.6e-05 Score=59.42 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=76.1
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHH------HHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQK------EFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~------~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
.++...+++++.+|+|+=.|.|.++..++... |...|+++-+.+... ...+...++....|++.+..+...+.
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 34455678899999999999999999998764 445777765544311 11111222222345666666665555
Q ss_pred cCCCccEEEEccccccc-------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 MEASYDRIYSIEMFEHM-------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++..|+++.+...|.+ .....+.+.+.+.|||||++++.+.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 44777888775544433 2356788899999999999988653
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00018 Score=65.49 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=97.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHH
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSRLED---GHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~----~p~~~v~~vD~s~~~~~~a~~~~ 107 (291)
..|+.+....+..+.+....+.++..... ...|+-+|+|-|-+.....+. ....++++|+-+|.++-..+...
T Consensus 336 etFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n 415 (649)
T KOG0822|consen 336 ETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRN 415 (649)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhc
Confidence 56777778888888888888888764432 456889999999876655432 23568999999999887776533
Q ss_pred HHhCCCCeEEEEccccCCccC-CCccEEEEcc--cccccccHHHHHHHHHhccccCeeEEE
Q 022810 108 RVLELQNVEIIVADISTFEME-ASYDRIYSIE--MFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 108 ~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~--~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+.-.++++++..|++.+..+ .+.|++++-. ++..-+-.++.|..+.+.|||+|+.+=
T Consensus 416 ~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 416 FECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 222225799999999999887 8899988732 333334457899999999999987543
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00041 Score=52.93 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=58.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC--C-CccEEEEcccccc-----c----ccHHHHHHHHHh
Q 022810 89 KITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--A-SYDRIYSIEMFEH-----M----KNYQNLLKKISK 155 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~--~-~~D~v~~~~~l~~-----~----~~~~~~l~~~~~ 155 (291)
+|+|+|+.+++++.+++++.+.+. ++++++..+=+.+..- . ++|+++.|.-.-- + ...-..++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 689999999999999999999988 4799999877665432 3 7999888753211 1 224568888899
Q ss_pred ccccCeeEEEEee
Q 022810 156 WMKEDTLLFVHHF 168 (291)
Q Consensus 156 ~L~pgG~l~i~~~ 168 (291)
.|+|||.+.+...
T Consensus 81 lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 81 LLKPGGIITIVVY 93 (140)
T ss_dssp HEEEEEEEEEEE-
T ss_pred hhccCCEEEEEEe
Confidence 9999999877643
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00055 Score=52.13 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~ 127 (291)
.+.++.+++.+...+..+.+|+|+|.|......++.. -...+|+++++-.+.+++-.+-..+. +..+|..-|+-....
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 4556667777777777799999999999999988873 36789999999999999888777777 468888888877654
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. .|..|+...+=.-++ .+-.++..-|..|..++..
T Consensus 137 ~-dy~~vviFgaes~m~---dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 137 R-DYRNVVIFGAESVMP---DLEDKLRTELPANTRVVAC 171 (199)
T ss_pred c-ccceEEEeehHHHHh---hhHHHHHhhCcCCCeEEEE
Confidence 3 344444433222222 3344555556666666553
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00075 Score=56.64 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----C-CCeEEEEccccCCcc----CCC-c
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----L-QNVEIIVADISTFEM----EAS-Y 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~i~~~~~d~~~~~~----~~~-~ 131 (291)
...+||++|+|+|..++.++... +.+|+..|... .+...+.+...++ + ..+.+...++..... ... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 35679999999998888887654 78999888744 3444444432222 1 145555555554321 144 8
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
|+|++..+++.......++.-+...|..+|++++...-+.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999998888888889999999989887777665443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00055 Score=55.85 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.+.++.||||--+.+..++.+..+...+++.|+++..++.|.+++.+.++ ++++..++|....-.. ..+|.|+..++=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 45669999999999999999998888999999999999999999999988 5799999998553323 579999887653
Q ss_pred cccccHHHHHHHHHhccccCeeEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.. -...++++-.+.|+.--.+++
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEE
Confidence 21 134556665665554334444
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00037 Score=60.51 Aligned_cols=112 Identities=11% Similarity=0.101 Sum_probs=73.4
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc----CCccCCCccEE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS----TFEMEASYDRI 134 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~----~~~~~~~~D~v 134 (291)
......+|||+|.|.|.-+.++-..+|.. .++.++.|+..-+...............+...|+. .++....|++|
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehh
Confidence 33456789999999999888888788764 58888999886666555444333222222233332 23322567777
Q ss_pred EEccccccccc---HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 135 YSIEMFEHMKN---YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+...-+-+... ....++.+..++.|||.++|..++.+
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 66554444422 34488899999999999999877643
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=61.88 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=100.1
Q ss_pred hcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC----CCE
Q 022810 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS----NCK 89 (291)
Q Consensus 14 ~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p----~~~ 89 (291)
..|...+.|+.+++....-. =....+-.+. ......+++.+...+..+|+|..||+|.+.....+... ...
T Consensus 142 ~~d~~G~~yE~ll~~fa~~~---~k~~GEfyTP--~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~ 216 (489)
T COG0286 142 DRDLFGDAYEYLLRKFAEAE---GKEAGEFYTP--REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIF 216 (489)
T ss_pred cccchhHHHHHHHHHHHHhc---CCCCCccCCh--HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhcccee
Confidence 45677788888775311110 0000111111 33445555556666777999999999998877766541 267
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc-----C-CCccEEEEccccccc-------------------
Q 022810 90 ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----E-ASYDRIYSIEMFEHM------------------- 143 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~-----~-~~~D~v~~~~~l~~~------------------- 143 (291)
++|.|+++.....++.++--++++ ++....+|....+. . .+||+|++++++...
T Consensus 217 ~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~ 296 (489)
T COG0286 217 IYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYG 296 (489)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccC
Confidence 999999999999999999888875 35555665544321 2 679999999987400
Q ss_pred ------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 144 ------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 144 ------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.....++..+...|+|||+..+..+..
T Consensus 297 ~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 297 VFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 012678999999999999766655543
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00053 Score=57.06 Aligned_cols=89 Identities=24% Similarity=0.407 Sum_probs=54.3
Q ss_pred HHHHHHcCCCCCC--EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH---HHhC-C-----CCeEEEEcc
Q 022810 53 ELYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLE-L-----QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~---~~~~-~-----~~i~~~~~d 121 (291)
+.+++.++++++. +|||.-+|.|.-+..++.. |++|+++|-|+-.....+.-+ .... . .+++++.+|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 4566667777664 8999999999999999976 889999999997665555332 2211 1 379999999
Q ss_pred ccCCcc--CCCccEEEEccccccc
Q 022810 122 ISTFEM--EASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~--~~~~D~v~~~~~l~~~ 143 (291)
..++.. ..+||+|+..+++.+-
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S----
T ss_pred HHHHHhhcCCCCCEEEECCCCCCc
Confidence 988532 2799999999998653
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00059 Score=61.99 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=81.3
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~ 143 (291)
.++|-+|||.-.+...+-+-. ...|+.+|+|+-.++.+...-. ....-+.+...|+....++ ++||+|+..+.++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 399999999998888887653 4579999999998887776543 2223588999999998888 999999999988777
Q ss_pred -cc---------HHHHHHHHHhccccCeeEEEEee
Q 022810 144 -KN---------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 144 -~~---------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+ ....+.+++++|+|||+++..+.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 21 24567889999999999777665
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00015 Score=62.95 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-- 127 (291)
.+++.+++.+...++..++|.--|.|+++..+.+++|+.+++|+|-++.+++.+++++.... +++.++.+++.++..
T Consensus 7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHH
T ss_pred ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHH
Confidence 45677788888888999999999999999999999888999999999999988877665432 478888888877531
Q ss_pred ----C-CCccEEEEccc
Q 022810 128 ----E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ----~-~~~D~v~~~~~ 139 (291)
. .++|.|+...-
T Consensus 86 ~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 86 KELNGINKVDGILFDLG 102 (310)
T ss_dssp HHTTTTS-EEEEEEE-S
T ss_pred HHccCCCccCEEEEccc
Confidence 1 46777777553
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0025 Score=51.77 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=69.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHH---------------------
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRV--------------------- 109 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~--------------------- 109 (291)
+..+..+.-..+.++.|-+||+|.+.-.+.-.++. ..|++.|+++.+++.|++|+.-
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 33334444456779999999999988877766533 4799999999999999986521
Q ss_pred --------------------h-CCCCeEEEEccccCCc------cCCCccEEEEccccccccc---------HHHHHHHH
Q 022810 110 --------------------L-ELQNVEIIVADISTFE------MEASYDRIYSIEMFEHMKN---------YQNLLKKI 153 (291)
Q Consensus 110 --------------------~-~~~~i~~~~~d~~~~~------~~~~~D~v~~~~~l~~~~~---------~~~~l~~~ 153 (291)
. +.......+.|+.+.. .....|+|+...+...+.+ ...+|..+
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence 1 1224667888888732 2244699999887765522 46799999
Q ss_pred HhccccCeeEEEE
Q 022810 154 SKWMKEDTLLFVH 166 (291)
Q Consensus 154 ~~~L~pgG~l~i~ 166 (291)
..+|.+++++.++
T Consensus 201 ~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 201 APVLPERSVVAVS 213 (246)
T ss_dssp HCCS-TT-EEEEE
T ss_pred HhhCCCCcEEEEe
Confidence 9999666666663
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=51.78 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCc--------cC-C
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE--------ME-A 129 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~~--------~~-~ 129 (291)
+.|+.+|||+||-.|..+....++. |...|.|||+-.- ..+..+.++++ |+.+.. .+ .
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 3689999999999999999888876 8889999997432 12234556666 666532 12 6
Q ss_pred CccEEEEccccc----ccccHHHHHH-------HHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFE----HMKNYQNLLK-------KISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~----~~~~~~~~l~-------~~~~~L~pgG~l~i~~~~~ 170 (291)
+.|+|++...-. .+.|....++ -....++|+|.++...+..
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 789999864321 1234433333 3345678999998876644
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00049 Score=56.07 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~---~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~--------- 128 (291)
.+..|+|+|.-.|+.+..+|.. + +..+|+|||++...... ......+. ++|+++++|..+...-
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 3679999999999998887754 2 56899999996543211 12222222 4899999998764311
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
....+|+ ..+-|...+..+.|+....++++|+++++.+.
T Consensus 110 ~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 110 PHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp -SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 1223333 34444456778888889999999999988554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=54.79 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=75.8
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~ 131 (291)
+.+.++|+.+||-||+++|....++.... |..-|++|+.|...=......+++. .||-.+.-|+.....- ...
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeE
Confidence 55678899999999999999888887654 6678999999887654444333332 3788888888764211 467
Q ss_pred cEEEEcccccccccHHHH-HHHHHhccccCeeEEEEeec
Q 022810 132 DRIYSIEMFEHMKNYQNL-LKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+|++.-.- +++..+ .-++...||+||-++++.-.
T Consensus 228 DvIFaDvaq---pdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 228 DVIFADVAQ---PDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEEeccCCC---chhhhhhhhhhhhhhccCCeEEEEEec
Confidence 777775321 444443 34678899999999886543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0024 Score=54.79 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH---HHhC-------------------------C--
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLE-------------------------L-- 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~---~~~~-------------------------~-- 112 (291)
...+||--|||.|.++..++.. |..+-|-+.|--|+-...-.+ +..+ +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3568999999999999999988 667777788877764433222 1100 0
Q ss_pred ----------CCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 113 ----------QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 113 ----------~~i~~~~~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+...-.||+.+.-.. +.||+|+...-+..-.+.-..++.+.++|||||+.+=
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 0111122444432211 4699999887777777888999999999999998654
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.074 Score=47.24 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=64.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH--------C--------CCCEEEEEcCCHHHHHHHHHHHHHh-----C
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK--------Y--------SNCKITGICNSKTQKEFIEEQCRVL-----E 111 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~--------p~~~v~~vD~s~~~~~~a~~~~~~~-----~ 111 (291)
..++.........+|+|+||..|..+..+.+. + |..+|+.-|+-.+-....-+.+... .
T Consensus 6 ~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~ 85 (334)
T PF03492_consen 6 KELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK 85 (334)
T ss_dssp HHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH
T ss_pred HHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC
Confidence 33433334556779999999999998877542 1 1247888885443222222222111 0
Q ss_pred CCC--eEEEEccccCCccC-CCccEEEEccccccccc---------------------------------------HHHH
Q 022810 112 LQN--VEIIVADISTFEME-ASYDRIYSIEMFEHMKN---------------------------------------YQNL 149 (291)
Q Consensus 112 ~~~--i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~---------------------------------------~~~~ 149 (291)
..+ +.-+.+.+-.-..| ++.|++++..++||+.. ...+
T Consensus 86 ~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~F 165 (334)
T PF03492_consen 86 FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSF 165 (334)
T ss_dssp TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 112 34445666554445 89999999999988721 1123
Q ss_pred HHHHHhccccCeeEEEEeeccCC
Q 022810 150 LKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 150 l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
|+.=.+-|+|||++++..++...
T Consensus 166 L~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 166 LKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHhhheeccCcEEEEEEeeccc
Confidence 33334557899999999988876
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0021 Score=57.84 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCc--cCCCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE--MEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~--~~~~~D~v~~~ 137 (291)
.+.+|||.=+|+|.=++..+...++ .+|+.-|+|+++++.+++|++.++++ ++++.+.|+..+. ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4569999999999998888887444 58999999999999999999999984 4889999998865 34889988765
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+- ..+..++..+.+.++.||.|+++...
T Consensus 129 Pf----GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 PF----GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -S----S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CC----CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 32 35678999999999999999997554
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=56.18 Aligned_cols=103 Identities=21% Similarity=0.157 Sum_probs=82.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~ 141 (291)
..+|||-=||+|.=++..+...+..+++.-|+||.+++.+++|++.+...+...+..|+..+... ..||+|=..+ +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP-F- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP-F- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC-C-
Confidence 67999999999999999988876569999999999999999999988444666677888776544 7788775543 2
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..+..+++.+.+.++.||++.++....
T Consensus 131 --GSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 131 --GSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred --CCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 345678888888888999999865543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0006 Score=57.95 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=80.8
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCcc---CCCcc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEM---EASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~i~~~~~d~~~~~~---~~~~D 132 (291)
.+....++|-||.|.|...+..+++-.-.++..+|++...++..++..... +. +++.+..+|...+.. .++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 355778999999999999999887622347899999999999988877653 23 479999998776532 28899
Q ss_pred EEEEcccccccc----cHHHHHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+....=.-.+ -...++..+.+.||+||+++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 998754211111 13568888999999999988854
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0044 Score=54.53 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=68.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-ccCCccC-CCccE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-ISTFEME-ASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-~~~~~~~-~~~D~ 133 (291)
...+..|+.+|+=+|+| .|..+..+++.. +++|+++|.+++-.+.|++. |.+ .++... ......- +.+|+
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL----GAD--HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhhHHhHhhCcE
Confidence 44567899999999987 567888888866 79999999999977766653 332 223322 2111111 44899
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+..-+ ...+....+.|++||.+++.-.
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECC
Confidence 887543 4567778889999999888644
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0042 Score=46.18 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~ 136 (291)
.+.+|+|||.+.|..+++++-+. ...|+++++++...+..+++++...+ ++.. ...+ ++.. ++||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~e---W~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKGE---WNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhheeeecee-eccc---ccccCCCcceEEE
Confidence 47899999999999999999773 45899999999999999888876644 2211 1222 2223 67887665
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0096 Score=52.43 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=80.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCC----CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSN----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------ 127 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~----~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~------ 127 (291)
.++++|+.+|||+++-.|.-+..+.+..-. ..|++-|.++..+.......+.....++.+...|+...+.
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 356789999999999999988888776322 2799999999988888877755444455555555544321
Q ss_pred ---C-CCccEEEEccccc------cccc-----------------HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 128 ---E-ASYDRIYSIEMFE------HMKN-----------------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ---~-~~~D~v~~~~~l~------~~~~-----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
. ..||-|++.-+-. ..++ ...++.+..++||+||.++-++.+..
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 1 5799998854221 1111 34588888999999999998877543
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0045 Score=53.52 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=74.6
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--ccCC---c---
Q 022810 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--ISTF---E--- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d--~~~~---~--- 126 (291)
+++...+.+.+||-+|+| .|..+...++.+...+|+.+|+++..++.|++ + |.+.+...... ..++ .
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKA 237 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhh
Confidence 455677899999999999 57788888888756789999999999998887 3 33222111111 1111 0
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022810 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 127 ~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 174 (291)
.. ..+|+.+...-+ +..++.....+++||.+++...+.+...
T Consensus 238 ~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~~~ 280 (354)
T KOG0024|consen 238 LGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEEIQ 280 (354)
T ss_pred ccccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCccc
Confidence 11 348888765433 4567777888999999888777665443
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.022 Score=51.24 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred CCEEEEEcCCcchHHHHHHHH---------------CCCCEEEEEcCCHHHHHHHHHHHHH--------------hCCCC
Q 022810 64 GHTVLDVGCGWGSLSLYIAQK---------------YSNCKITGICNSKTQKEFIEEQCRV--------------LELQN 114 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~---------------~p~~~v~~vD~s~~~~~~a~~~~~~--------------~~~~~ 114 (291)
..+|+|+|||+|.++..+... .|..+|..-|+-.+-....-+.+.. .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999887665321 1346777777544332222222211 01011
Q ss_pred --eEEEEccccCCccC-CCccEEEEccccccccc--------------------------------------HHHHHHHH
Q 022810 115 --VEIIVADISTFEME-ASYDRIYSIEMFEHMKN--------------------------------------YQNLLKKI 153 (291)
Q Consensus 115 --i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~ 153 (291)
+.-+.+.+-.-.+| ++.+++++..++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333332344 88999999999988842 11233333
Q ss_pred HhccccCeeEEEEeeccCC
Q 022810 154 SKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 154 ~~~L~pgG~l~i~~~~~~~ 172 (291)
.+-|.|||.+++...+++.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHhccCcEEEEEEecCCC
Confidence 4568899999999988764
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=54.78 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=66.5
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----------C--c
Q 022810 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----------F--E 126 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-----------~--~ 126 (291)
..++.+|+=+|||. |..+...++.. |++|+++|.+++.++.+++ .|. +++..|..+ . .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes----lGA---~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES----MGA---EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEEeccccccccccchhhhcchh
Confidence 35789999999994 77777888776 7899999999997766654 343 222111110 0 0
Q ss_pred ---------cC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 ---------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ---------~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+ ..+|+|+.......-+.+..+.+.+.+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 3589998876543322333345999999999999776543
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0086 Score=56.72 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=82.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcC-------------------------C----CCCCEEEEEcCCcchHHHHHHHHC
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSR-------------------------L----EDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------~----~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
..|+.+....+..+.++...+.++.. . .....|+-+|+|-|-+.....+..
T Consensus 643 EVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAa 722 (1072)
T PTZ00357 643 EVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAV 722 (1072)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHH
Confidence 56776666677776766666644321 0 011358999999998765544331
Q ss_pred ----CCCEEEEEcCCHHHHHHHHHHHHH-hCC--------CCeEEEEccccCCccC------------CCccEEEE--cc
Q 022810 86 ----SNCKITGICNSKTQKEFIEEQCRV-LEL--------QNVEIIVADISTFEME------------ASYDRIYS--IE 138 (291)
Q Consensus 86 ----p~~~v~~vD~s~~~~~~a~~~~~~-~~~--------~~i~~~~~d~~~~~~~------------~~~D~v~~--~~ 138 (291)
-..+|++||.++........+..+ ... ++|+++..|+..+..+ +++|+||+ .+
T Consensus 723 k~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLG 802 (1072)
T PTZ00357 723 SALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLG 802 (1072)
T ss_pred HHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhc
Confidence 135899999996654444443221 112 2489999999987432 37999998 44
Q ss_pred cccccccHHHHHHHHHhcccc----Cee
Q 022810 139 MFEHMKNYQNLLKKISKWMKE----DTL 162 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~p----gG~ 162 (291)
+|..-+-.++-|..+.+.||+ +|+
T Consensus 803 SFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 803 SLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccCCHHHHHHHHHhhhhhcccccc
Confidence 554444456788888888876 776
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00043 Score=53.13 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=40.0
Q ss_pred ccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 126 EME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
.+. ++.|+|.+..+++|+ ..-..+++.++++|||||+|.+..|.....
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 344 889999999999998 445678999999999999999988765543
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.003 Score=54.91 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=81.1
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHH-------HHHHHHHHhCC-C-CeEEEEccccCCccC-
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE-------FIEEQCRVLEL-Q-NVEIIVADISTFEME- 128 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~-------~a~~~~~~~~~-~-~i~~~~~d~~~~~~~- 128 (291)
....+|.-|+|---|||.+....+.- |+.|.|.|++-.++. ..+.|+++.|. + -+.++.+|....+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 34678999999999999999988854 899999999988876 34567888775 2 367888888775544
Q ss_pred -CCccEEEEccccc------------------------cccc---------HHHHHHHHHhccccCeeEEEEee
Q 022810 129 -ASYDRIYSIEMFE------------------------HMKN---------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~v~~~~~l~------------------------~~~~---------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..||.|+|.++.. |.+. ...++.-..+.|..||++++-.|
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 6899999988651 1110 23355666788899999887554
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0036 Score=56.09 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=55.4
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC--CCccEEEE
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--ASYDRIYS 136 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~--~~~D~v~~ 136 (291)
.-|||||+|+|.++...++.. +-.|++++.-..|.+.|++...++|. ++|.++.---.+.... ...|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 358999999999999888774 55799999999999999999999998 5788877655544322 23565554
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.014 Score=48.13 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCcchHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHHHh-CCC-CeEEEEccccC-C----cc-CCCccE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIVADIST-F----EM-EASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~-~~p~~~v~~vD~s~~~~~~a~~~~~~~-~~~-~i~~~~~d~~~-~----~~-~~~~D~ 133 (291)
++.++||||.|.-..=-.+-. .+ +.+.+|.|+++.+++.|+.....+ ++. .|+.....=.+ + .- .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 567899999885443222222 23 678999999999999999988877 443 35555442222 1 11 168999
Q ss_pred EEEccccccc
Q 022810 134 IYSIEMFEHM 143 (291)
Q Consensus 134 v~~~~~l~~~ 143 (291)
+.|++++|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999999755
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0088 Score=51.90 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
..+++.++.... .+|..|||.-||+|..+....+. +-+++|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 556667766543 67899999999999999988877 88999999999999999998754
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0055 Score=56.09 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cCCCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-MEASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~D~v~~~~~l 140 (291)
.-..|+|..+|.|+++.+|... .. ......+..-......+-..|+ | -+..|+.+ ++ .+.+||+|.++..|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~--~V--WVMNVVP~~~~ntL~vIydRGL--I-G~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD--PV--WVMNVVPVSGPNTLPVIYDRGL--I-GVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ceeeeeeecccccHHHHHhccC--Cc--eEEEecccCCCCcchhhhhccc--c-hhccchhhccCCCCcchhheehhhhh
Confidence 3457999999999999999865 33 3332222211111122233343 1 13345544 22 33899999999988
Q ss_pred cccc---cHHHHHHHHHhccccCeeEEEEe
Q 022810 141 EHMK---NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.... +...++-++-|+|+|+|.++|.+
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 7663 46778999999999999999854
|
; GO: 0008168 methyltransferase activity |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0097 Score=49.39 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~ 105 (291)
..+++.++... ..+|..|||.-||+|+.+.+..+. +.+.+|+|+++..++.|++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 45666666554 357899999999999999998877 8899999999999988864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.004 Score=52.89 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHc---CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHH-------HHHH--HhCC-CC
Q 022810 48 EKAMLELYCERS---RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE-------EQCR--VLEL-QN 114 (291)
Q Consensus 48 ~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~-------~~~~--~~~~-~~ 114 (291)
....+..+...+ -...+++|||+|||.|...+....+. ...+...|.|...++... ..+. .... .-
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~ 176 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKV 176 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhcccc
Confidence 344445554332 13468999999999999999888773 378888888887662111 0111 0000 01
Q ss_pred eEEEEc---cccCCccC-CCccEEEEcccccccccHHHH-HHHHHhccccCeeEEE
Q 022810 115 VEIIVA---DISTFEME-ASYDRIYSIEMFEHMKNYQNL-LKKISKWMKEDTLLFV 165 (291)
Q Consensus 115 i~~~~~---d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i 165 (291)
...... |....... ..||+|.+..++........+ .......++++|++++
T Consensus 177 ~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 177 DEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred eeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 222233 22111111 279999999999888776666 5566677889998776
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0028 Score=56.58 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCC
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTF 125 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~ 125 (291)
.++|..|.|+.||.|.++..++++ +++|++.|++++++++.+.+++.+.++ +++.+..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 468899999999999999999988 799999999999999999999887773 488888887654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.02 Score=47.92 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
..++..++... ..+|..|||.-||+|..+....+. +.+++|+|+++...+.+.+++.+.
T Consensus 150 ~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34555555543 357889999999999999988876 889999999999999999888654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.021 Score=48.68 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHcCCCC-CCEEEEEcCCcchHHHHHHHHCC--------CCEEEEEcCCHHHHHHHHHHHHHhC-----C-CCeEEE
Q 022810 54 LYCERSRLED-GHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLE-----L-QNVEII 118 (291)
Q Consensus 54 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~p--------~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~i~~~ 118 (291)
...+.++.+. ..+|+|+|+|.|.++..+.+... ..+++.||+|+.+.+.-++++.... . .++.+
T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w- 86 (252)
T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW- 86 (252)
T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-
T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-
Confidence 3344443332 47999999999999998877532 3589999999998877776665421 1 25666
Q ss_pred EccccCCccCCCccEEEEcccccccc
Q 022810 119 VADISTFEMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 119 ~~d~~~~~~~~~~D~v~~~~~l~~~~ 144 (291)
..++.+.+ ..-+|+++..+..++
T Consensus 87 ~~~l~~~p---~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 87 LDDLEEVP---FPGFIIANELFDALP 109 (252)
T ss_dssp ESSGGCS----CCEEEEEESSGGGS-
T ss_pred hhhhhccc---CCEEEEEeeehhcCc
Confidence 34544443 456788888887765
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.034 Score=50.44 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-cc----CCccCC
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-IS----TFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-~~----~~~~~~ 129 (291)
....+.++.+||.+|||. |..+..+++.. +. ++++++.+++..+.+++.. +...+.....+ .. +.....
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCC
Confidence 345567889999999987 88888898887 55 6999999998877776542 21111111111 11 111113
Q ss_pred CccEEEEcccc---------------cccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMF---------------EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l---------------~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|+|+-.-.- ....+....+..+.+.|+|+|.++...
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 68988774211 111344667888999999999987753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.077 Score=47.50 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-ccc----CCccCCCccEE
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DIS----TFEMEASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~----~~~~~~~~D~v 134 (291)
..++.+|+=+||| .|.++..+++.....+|+++|.++..++.|++..... .+..... +.. .......+|++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEE
Confidence 3445599999999 4888888888876679999999999988887643211 1111111 110 11111368998
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+-..- ....+..+.+.++|||.+.+....
T Consensus 243 ie~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 243 IEAVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 85433 355888999999999998876543
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0041 Score=45.13 Aligned_cols=37 Identities=14% Similarity=0.437 Sum_probs=30.3
Q ss_pred CccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+||+|+|..+.-++ .....+++++.+.|+|||.++++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998887665 34678999999999999999985
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.29 Score=40.99 Aligned_cols=107 Identities=7% Similarity=0.028 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC--CCcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME--ASYD 132 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p----~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~--~~~D 132 (291)
..+...+|+|+|+..-+..+...+. -.+++.+|+|...+....+.+...-. -.+.-+++|.+... ++ +.-=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 4578999999999887777665432 26899999999987655444433211 14566677765421 12 2222
Q ss_pred EEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 133 RIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++...++..+ .+...++..+...|+||-++++-.-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 23344455555 3456799999999999999988543
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0036 Score=53.38 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCcchHHH-HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSL-YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~-~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.+..|.|+-+|.|.++. .+... ....|.++|.+|..++..++++..+++ ++...+.+|-....+....|-|....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL-- 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL-- 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc--
Confidence 45789999999999998 45444 256899999999999999999988877 45677778877765557778777642
Q ss_pred cccccHHHHHHHHHhccccCe--eEEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDT--LLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG--~l~i~ 166 (291)
++..++-...+.++|+|.| ++-|.
T Consensus 271 --lPSse~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 271 --LPSSEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred --ccccccchHHHHHHhhhcCCcEEEEe
Confidence 2444444555666777744 44443
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.049 Score=46.20 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~v~~~~~ 139 (291)
.|..|+-+| -.-..+++++-..-..+|..||+++..++...+.+.+.|+++++.+.-|+.+.-+. .+||+.+..++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 467899998 33334444443322568999999999999999999999998899999999885333 79998877654
Q ss_pred ccccccHHHHHHHHHhccccC---eeEEEE
Q 022810 140 FEHMKNYQNLLKKISKWMKED---TLLFVH 166 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pg---G~l~i~ 166 (291)
+.++....++.+=...||.- |++.++
T Consensus 231 -eTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 231 -ETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred -hhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 35566677777767777765 566554
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.054 Score=47.83 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH----CC----CCEEEEEcCCHHHHHHHHHHHHHh
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YS----NCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~p----~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
+-.+.+.++.+.+..++|||.|.|.++.-+.+. .| ..++..||+|++..+.=+++++..
T Consensus 66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 334445566667789999999999998877654 33 579999999999776655555443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.1 Score=46.42 Aligned_cols=100 Identities=12% Similarity=0.168 Sum_probs=62.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC-CCcc
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME-ASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~~-~~~D 132 (291)
......++.+||=.||| .|..+..+++.. +. +|+++|.+++.++.+++ .|.+.+ .....++.+.... +.+|
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCC
Confidence 34445578899999987 466777777765 66 69999999987766654 343211 1111122111111 3588
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+-... ....+..+.+.|++||.+++..
T Consensus 238 ~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 238 VSFEVSG------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 8875422 1346777888999999987754
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.056 Score=50.52 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----------------
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---------------- 124 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~---------------- 124 (291)
.++.+|+=+|+|. |..+..+++.. ++.|+++|.++..++.++. .|. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa---~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGA---EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccccceeecCHHH
Confidence 3678999999994 66677777665 7889999999986655543 332 222222211
Q ss_pred -------Ccc-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 125 -------FEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 -------~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+.. ...+|+|+....+..-+.+.-+.+++.+.+|||++++=
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111 14699998776554444444577788899999988653
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.022 Score=49.23 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=52.0
Q ss_pred EEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCCccEEEEccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIEMFE 141 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---~~~~D~v~~~~~l~ 141 (291)
+++|+.||.|.++..+.+. +. .+.++|+++.+++..+.+... .++++|+.++.. ...+|+++...+-.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999999888876 45 478899999988877766532 156677777543 25699999987654
Q ss_pred c
Q 022810 142 H 142 (291)
Q Consensus 142 ~ 142 (291)
.
T Consensus 74 ~ 74 (275)
T cd00315 74 P 74 (275)
T ss_pred h
Confidence 3
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0085 Score=54.60 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-----CCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-----ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-----~~~D~v 134 (291)
.++.+|||.=|++|.-++..+...|+. +|++.|.++..++..+++++.++.. .++....|+..+... ..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 356789999999999999999888775 7999999999999999999888773 467778887664322 679988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
=..+- .....+|+.+.+.++.||.|+++..+
T Consensus 188 DLDPy----Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DLDPY----GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ecCCC----CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 76532 34467888899999999999997544
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.29 Score=40.14 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCcc----hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccc-cCCccC-CCccEEE
Q 022810 63 DGHTVLDVGCGWG----SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADI-STFEME-ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G----~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~-~~~~~~-~~~D~v~ 135 (291)
....|++..|+.| .++...|.+..+.++++|-+++..+...++.+...+.. .++|+.++. ++.... ...|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4567889976644 33444455556889999999999888888888877773 469988885 333333 6789988
Q ss_pred EcccccccccHH-HHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQ-NLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~ 167 (291)
...-. .+.. .+|+.+. +.|.|.+++..
T Consensus 121 VDc~~---~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 121 VDCKR---EDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred EeCCc---hhHHHHHHHHhc--cCCCceEEEEe
Confidence 86543 3444 4555433 55677766643
|
The function of this family is unknown. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.15 Score=45.55 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcC---CHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEE
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICN---SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~---s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~ 136 (291)
..++.+||-+|+| .|.++..+++.. +++|++++. ++...+.++ +.|.+.+.....+..+......+|+|+-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 4578899999987 466777777776 779999986 566544443 3443211111111111011146888876
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
... ....+....+.|+++|.+++..
T Consensus 245 ~~g------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 245 ATG------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CcC------CHHHHHHHHHHccCCcEEEEEe
Confidence 432 1346778889999999987643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.23 Score=43.67 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=63.2
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-------CccCCC
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEMEAS 130 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-------~~~~~~ 130 (291)
..+.++.+||..|+| .|..+..+++.. +.+|++++.++...+.+++ .+.+. +..+-.. ......
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADE---VLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCE---EEcCCCcCHHHHHHHhcCCC
Confidence 346778899998887 478888888876 7889999999987766543 34321 1111111 111256
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+.... ....++.+.+.|+++|.++...
T Consensus 233 ~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 233 FDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ceEEEECCC------CHHHHHHHHHHhhcCCEEEEEC
Confidence 898875421 1356788889999999987753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.08 Score=47.14 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH-------HHHHhCC--
Q 022810 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE-------QCRVLEL-- 112 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~-------~~~~~~~-- 112 (291)
.++.+.+.+.+..+++.+.+.++....|+|+|.|.+...++....-..-.|+++....-+.+.. ..+..|-
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 4566666777888888899999999999999999999888876433355677655443333322 2222333
Q ss_pred CCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 113 QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 113 ~~i~~~~~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+..+++++.+...- ...++|+++++... ++...-+.++..-+++|-.++-.
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecc
Confidence 3578888887664321 56788888876633 33334444777778888886553
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.44 Score=40.75 Aligned_cols=119 Identities=9% Similarity=0.057 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTF- 125 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~- 125 (291)
+.++..+..........|+.||||-=.-...+... ++.+++=+|. |+.++.-++.+.+.+. .+..++.+|+.+.
T Consensus 68 r~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w 145 (260)
T TIGR00027 68 RFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDW 145 (260)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhH
Confidence 34555554432233457999999876665555321 2466777776 5556665566665432 3678888998621
Q ss_pred c-------cC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 126 E-------ME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~-------~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
. +. ...-++++-+++.+++ ...++++.+.+...||+.+++....+
T Consensus 146 ~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 146 PAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred HHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 0 11 2345788888888883 56779999988888999988876544
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.014 Score=42.08 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCH
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK 97 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~ 97 (291)
+....+|||||.|.+...|.+. |..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccccc
Confidence 5668999999999999999887 78888999744
|
; GO: 0008168 methyltransferase activity |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.4 Score=42.40 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
.....+++.+||=.|+| .|..+..+++.. +++|++++.+++..+.++ +.|.+.+ + |..+. ..+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~----~~Ga~~v--i--~~~~~-~~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLAL----ALGAASA--G--GAYDT-PPEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH----HhCCcee--c--ccccc-CcccceEEE
Confidence 34567789999999976 455667777765 788999999988665554 3454221 1 11111 124578765
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..... ...+....+.|++||++++.-
T Consensus 229 ~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 43221 346788889999999987754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.016 Score=45.00 Aligned_cols=100 Identities=23% Similarity=0.257 Sum_probs=62.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-C-ccCCCccEEEEcccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-F-EMEASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~~D~v~~~~~l 140 (291)
+++.+-+|+..=..-....+.. ..+|..||.++--++ +.++ +++ .+...|+.. + ...++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~---~~~~----dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQ---EEFR----DRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccC---cccc----cccccccHHHHHHHHHHhhccchhhheechh
Confidence 5678888888665555444442 557888887652111 1110 121 122233322 1 122789999999999
Q ss_pred cccc-----c------HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 141 EHMK-----N------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~-----~------~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+|.. | -...+.++.++|||||.|++..|.-+
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 8871 1 24578888999999999999887543
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.052 Score=47.04 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--------------------CCCEEEEEcCCHHH--HHHHHHHHHHh-----------
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--------------------SNCKITGICNSKTQ--KEFIEEQCRVL----------- 110 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--------------------p~~~v~~vD~s~~~--~~~a~~~~~~~----------- 110 (291)
..+||.||.|-|.-...++..+ +...++.||+.+-. ++.....+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999988766666543 11489999987642 33333222222
Q ss_pred --CC--C--CeEEEEccccCCccC--------CCccEEEEccccccc-----ccHHHHHHHHHhccccCeeEEEEee
Q 022810 111 --EL--Q--NVEIIVADISTFEME--------ASYDRIYSIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 111 --~~--~--~i~~~~~d~~~~~~~--------~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. + ++.|.+.|+.....+ ...++|...+++..+ ....++|.++-..++||..|+|.+.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 11 1 578999998876532 136777766655433 5567899999999999999888653
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.13 Score=41.32 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------C-CC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------E-AS 130 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~---~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-------~-~~ 130 (291)
.+..|+|+|.-.|..++.+|.. . ...+|.++|++-..++-+... .++|.++.++-.+... . +.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 4568999999999988888764 2 237999999987654333221 4589999998776431 1 22
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 174 (291)
--+.++..+-|+....-+.++....+|..|-++++.+...+..+
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 24455666777777777888888899999999999877666554
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.099 Score=44.22 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHH---C--CCCEEEEEcCCH------------------------
Q 022810 48 EKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQK---Y--SNCKITGICNSK------------------------ 97 (291)
Q Consensus 48 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~--p~~~v~~vD~s~------------------------ 97 (291)
....+..+++.+. ..-+..|+|+||-.|..+..++.. + ++.+++++|.=+
T Consensus 58 Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~ 137 (248)
T PF05711_consen 58 RLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGY 137 (248)
T ss_dssp HHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccc
Confidence 3344455555442 122348999999999877665432 2 345788887211
Q ss_pred --HHHHHHHHHHHHhCC--CCeEEEEccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 98 --TQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 98 --~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..++..++++...++ +++.++.+.+.+..+. .++-++....-+ -+.....|+.+...|.|||++++.+.+.
T Consensus 138 ~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 138 LAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp CTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 133444444444454 4799999998774332 333333332211 1446778999999999999999976544
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.064 Score=44.25 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCEEEEEcCCcchHHHHHHHHC----C--CC---EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY----S--NC---KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~----p--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------- 126 (291)
-.+++|++.-.|..+..+.++. + +. .+++||+.+- ..++.+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 4689999999999999998873 1 12 3999998653 24456778899988742
Q ss_pred cC-CCccEEEEccc-----ccccccH------HHHHHHHHhccccCeeEEEEeec
Q 022810 127 ME-ASYDRIYSIEM-----FEHMKNY------QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ~~-~~~D~v~~~~~-----l~~~~~~------~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+. ++.|+|+|.+. +|.+..+ ...|.-...+|+|||.++...+-
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 23 58999999874 4444322 23455556789999998875543
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.17 Score=45.69 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=52.4
Q ss_pred cCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEc
Q 022810 15 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 94 (291)
Q Consensus 15 yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD 94 (291)
||+....|..+++ .+.|+ ..|+++. .-.+.+.+.++.+||-|.+|......++.+. ..+|++||
T Consensus 1 ~~~~~~~~~~~f~-~lvY~-~~WEDp~------------vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~--P~~I~aVD 64 (380)
T PF11899_consen 1 YGLLERLFTQFFR-GLVYA-QCWEDPR------------VDMEALNIGPDDRVLTITSAGCNALDYLLAG--PKRIHAVD 64 (380)
T ss_pred CchHHHHHHHhcc-ceeec-cccCCcH------------HHHHHhCCCCCCeEEEEccCCchHHHHHhcC--CceEEEEe
Confidence 5666667776666 46675 3454321 1234567889999999988766665555543 58999999
Q ss_pred CCHHHHHHHHHHH
Q 022810 95 NSKTQKEFIEEQC 107 (291)
Q Consensus 95 ~s~~~~~~a~~~~ 107 (291)
+|+.++...+-+.
T Consensus 65 lNp~Q~aLleLKl 77 (380)
T PF11899_consen 65 LNPAQNALLELKL 77 (380)
T ss_pred CCHHHHHHHHHHH
Confidence 9999887776443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.12 Score=44.80 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=71.4
Q ss_pred CCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 64 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
+.+|.-||.| .|..+.-++.-. ++.|+.+|.|...+......+ + .++.....+...+... .+.|+|+..-.+-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f---~-~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF---G-GRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh---C-ceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4578888888 577777777655 899999999988766555443 2 2567776666655444 6789999866555
Q ss_pred ccccHHHHHHHHHhccccCeeEEE
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.-..+.-..+++.+.||||++++=
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEE
Confidence 556777788999999999998754
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.16 Score=45.08 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022810 46 DAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~ 105 (291)
..+.+.+..++..+. ..+-..|+|+|.|.|.++..++-.+ +..|.+||-|....+.|++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 344444555554443 3456789999999999999999877 8999999999877766654
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.17 Score=43.68 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc----cCCccCCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADI----STFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~----~~~~~~~~ 130 (291)
......++.+||=+|+| .|..+..+++.. +.+ |+++|.++...+.+++ .|.+.+ +...+. ........
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHhCCCC
Confidence 34455688899999886 455666677665 665 9999998886665544 343211 100111 01111135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+-... ....++.+.+.|+|+|.+++..
T Consensus 188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence 888875321 1346777888999999987754
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.38 Score=42.79 Aligned_cols=95 Identities=9% Similarity=0.177 Sum_probs=59.5
Q ss_pred CCCCCCEEEEEcCC-cchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022810 60 RLEDGHTVLDVGCG-WGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
..+++.+||-+||| .|..+..++++ ..+.+|+++|.+++.++.+++ .+. . .... +......+|+|+-.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~---~~~~~~g~d~viD~ 229 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLID---DIPEDLAVDHAFEC 229 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehh---hhhhccCCcEEEEC
Confidence 45678999999987 35555666664 435689999999887777653 221 1 1111 11111247888743
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
--- ......+....+.|+++|++++..
T Consensus 230 ~G~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 230 VGG---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCC---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 210 113457888889999999987754
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.048 Score=49.87 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cC-CCccEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------ME-ASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------~~-~~~D~v 134 (291)
.+.++|-+|-|.|.+...+...+|..++++|+++|.+++.|+..+.-..-++..+...|..+.. .. ..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 4568899999999999999888888999999999999999998764322122333344433221 12 568988
Q ss_pred EEcc---ccccccc------HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 135 YSIE---MFEHMKN------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~---~l~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
...- -.+.+.. .+.++..++..|.|.|.+++...++.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 7632 1222211 25588889999999999988766554
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.12 Score=44.78 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCCCCCE--EEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC-
Q 022810 49 KAMLELYCERSRLEDGHT--VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST- 124 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~--vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~- 124 (291)
.+.++.++..-...++.. =+|||.|.-.+--.+.....+....++|++...+..|+++..++++ +.+.+++....+
T Consensus 86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt 165 (419)
T KOG2912|consen 86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT 165 (419)
T ss_pred HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence 344555544332222322 3788887665544443332356789999999999999999999888 457766664322
Q ss_pred -------CccCCCccEEEEccccc
Q 022810 125 -------FEMEASYDRIYSIEMFE 141 (291)
Q Consensus 125 -------~~~~~~~D~v~~~~~l~ 141 (291)
...+..||++.|++++.
T Consensus 166 ll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 166 LLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred cchhhhccCccceeeEEecCCchh
Confidence 11124599999999873
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.35 Score=38.35 Aligned_cols=101 Identities=19% Similarity=0.123 Sum_probs=61.4
Q ss_pred EEcCCcchHHHHHHHHCC-CCEEEEE--cCCHHHHHHHH---HHHHHhCCCCeE-EEEccccCCcc----C-CCccEEEE
Q 022810 69 DVGCGWGSLSLYIAQKYS-NCKITGI--CNSKTQKEFIE---EQCRVLELQNVE-IIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 69 DiGcG~G~~~~~l~~~~p-~~~v~~v--D~s~~~~~~a~---~~~~~~~~~~i~-~~~~d~~~~~~----~-~~~D~v~~ 136 (291)
=+|=|.-.++..|++.+. +..+++. |...+..+... .++....-.++. ....|+..+.. . .+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777778888988875 5566554 44433332222 333322111222 34456666531 2 78999999
Q ss_pred ccccccc-------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 137 IEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.+-..- .-...+++.+..+|+++|.+.|+...
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9875441 11356888899999999999886543
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.22 Score=42.49 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF 125 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~ 125 (291)
+..+.+.-.+.+...++|+|||.|.++.++++.. +...++.||-..... .+-...+.... ..+.=+..|+.++
T Consensus 7 i~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 7 IGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDL 85 (259)
T ss_pred HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeecc
Confidence 3344333334677899999999999999999886 456899999755432 22333333321 1455666777776
Q ss_pred ccC---C---CccEEEEccccccc--ccHHHHHHHHHhccc-------cCeeEEEEeeccC
Q 022810 126 EME---A---SYDRIYSIEMFEHM--KNYQNLLKKISKWMK-------EDTLLFVHHFCHK 171 (291)
Q Consensus 126 ~~~---~---~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~-------pgG~l~i~~~~~~ 171 (291)
... . ...-|+.. --|+ ...+-.|+.+.+..+ +.|.++.....+.
T Consensus 86 ~l~~~~~~~~~~~~vv~i--sKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH~ 144 (259)
T PF05206_consen 86 DLSKLPELQNDEKPVVAI--SKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIAPCCHHR 144 (259)
T ss_pred chhhcccccCCCCcEEEE--EccccccchhHHHHhhccCccccccCCccCeEEEEeCCCCc
Confidence 432 1 11212211 1133 234566776665543 5677665544443
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.84 Score=43.01 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccC-Ccc--CCCccE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADIST-FEM--EASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p----~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~-~~~--~~~~D~ 133 (291)
++..|.|..||+|.+.....+... ...++|.+....+...++.++.-.+. +......+|-.. ... ..+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 567999999999998876544321 24699999999999999888765554 223333344322 111 156899
Q ss_pred EEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++++++... ..-..++..+...|++||...+..+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 9988854221 0123477778889999998665444
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.28 Score=43.10 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=51.3
Q ss_pred EEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--C-CccEEEEccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A-SYDRIYSIEMFE 141 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~-~~D~v~~~~~l~ 141 (291)
+++|+-||.|.+..-+.+. +. .+.++|+++.+.+..+.|+. ....+|+.++... . .+|+++..++-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCc
Confidence 7999999999999999877 54 57899999998888777763 6788999887633 3 599999877654
Q ss_pred cc
Q 022810 142 HM 143 (291)
Q Consensus 142 ~~ 143 (291)
.+
T Consensus 73 ~f 74 (335)
T PF00145_consen 73 GF 74 (335)
T ss_dssp TT
T ss_pred eE
Confidence 43
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.22 Score=44.05 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=60.7
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC---CccCCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST---FEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~---~~~~~~ 130 (291)
..+.+.++.+||=+|+| .|..+..+++.. +.+ |++++.+++..+.+++ .|.+.+ .....+... ......
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCC
Confidence 45567789999999886 355666677665 677 9999999887666543 343211 111111111 111136
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+-... ....+....+.|+++|.+++..
T Consensus 232 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSG------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 898885422 1345566778899999987643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.24 Score=44.60 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-Cc--cCCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-FE--MEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~-~~--~~~~ 130 (291)
....++++.+||=.|+| .|..+..+++.. +. +|+++|.+++..+.+++ .|.+.+ .....|..+ +. ..+.
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCC
Confidence 44567788999999986 366677777765 66 69999999987766643 343211 111111111 00 0135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+-... ....+....+.|+++|.+++..
T Consensus 260 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAG------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCC------ChHHHHHHHHHHhcCCEEEEEc
Confidence 788875321 1346677788899999987643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.89 Score=41.58 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=61.4
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 52 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
++.+.+..+. .++.+|+=+|+|. |......++.. |++|+++|.++...+.|+. .|. ... +..+. -.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e~--v~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGY---EVM--TMEEA--VK 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCC---EEc--cHHHH--Hc
Confidence 3444444443 4789999999995 55555555555 7899999999886555543 333 221 12111 14
Q ss_pred CccEEEEcccccccccHHHHHHH-HHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKK-ISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~-~~~~L~pgG~l~i~~ 167 (291)
..|+|+... .....+.. ..+.+++||+++...
T Consensus 257 ~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 579988642 12345554 488999999987654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.85 Score=40.77 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=60.9
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEAS 130 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~----~~~~~~ 130 (291)
.....++.+||-.||| .|..+..+++.. +. +|+++|.++...+.+++ .|.+. +.....+..+ ......
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCC
Confidence 3456789999999986 366677777776 66 59999999987766643 34321 1111111111 111135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+-... . ...+....+.+++||++++..
T Consensus 246 ~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhccCCEEEEEC
Confidence 888875321 1 245677778899999987753
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.42 Score=35.73 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=56.9
Q ss_pred CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC-CCccEEEEccccccccc
Q 022810 73 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYDRIYSIEMFEHMKN 145 (291)
Q Consensus 73 G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~-~~~D~v~~~~~l~~~~~ 145 (291)
|.|..+..+++.. +.+|+++|.++..++.+++ .|.+ .++..+-.++. .+ ..+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEEEEecC------
Confidence 5688899999887 6999999999997766654 3431 12222211111 11 36898886533
Q ss_pred HHHHHHHHHhccccCeeEEEEeec
Q 022810 146 YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 146 ~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
....++...++|+|+|.+++....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 256888899999999999886543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.42 Score=40.27 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC---CccCCCccEEEE
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST---FEMEASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~---~~~~~~~D~v~~ 136 (291)
.++.+||..|+|. |..+..+++.. +.++++++.++...+.+++ .+... +.....+... ......+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 6789999999985 66677777665 7899999999876665543 22211 1100001100 011256899886
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
...- ...+..+.+.|+++|.++...
T Consensus 208 ~~~~------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 208 AVGG------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCC------HHHHHHHHHhcccCCEEEEEc
Confidence 4321 145677788899999987643
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.37 Score=37.02 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
+|+..++..++.+...+| -|||+|=|.|..=.+|.+.+|+.+++++|-.-..- ...-.+.-.++.+|+.+..
T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~~~P~~~~~ilGdi~~tl 84 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PSSTPPEEDLILGDIRETL 84 (160)
T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG---GGGEEES-HHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CCCCCchHheeeccHHHHh
Confidence 466677777777766654 79999999999999999999999999999533211 1111112346788877642
Q ss_pred cC-----CCccEEEEcccccccccH---HH-HHHHHHhccccCeeEEEE
Q 022810 127 ME-----ASYDRIYSIEMFEHMKNY---QN-LLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~~-----~~~D~v~~~~~l~~~~~~---~~-~l~~~~~~L~pgG~l~i~ 166 (291)
.. .+.-++.+..-.+.-+.- .. +-.-+..+|.|||+++-.
T Consensus 85 ~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 85 PALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp HHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred HHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 11 233333333222221111 11 223456789999987653
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.31 Score=47.58 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC-------C-----CCEEEEEcCCH---HHHHHHH-----------HHHHH-----h
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKY-------S-----NCKITGICNSK---TQKEFIE-----------EQCRV-----L 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~-------p-----~~~v~~vD~s~---~~~~~a~-----------~~~~~-----~ 110 (291)
.+.-+|+|+|-|+|.+.....+.+ | ..+++++|..+ +.+..+. +.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345799999999999777665443 2 24789999644 2222221 11111 1
Q ss_pred CC-------C--CeEEEEccccCCccC--CCccEEEEccccc-cccc--HHHHHHHHHhccccCeeEEEE
Q 022810 111 EL-------Q--NVEIIVADISTFEME--ASYDRIYSIEMFE-HMKN--YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 111 ~~-------~--~i~~~~~d~~~~~~~--~~~D~v~~~~~l~-~~~~--~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|. . .+++..+|+.+.... ..+|+++...--- .-++ ...+++.+.++++|||++.-.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 11 1 345677888764322 5699999875221 1122 267999999999999998743
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.47 Score=40.16 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
.+.+++...|+|.-.|+.+-.|.++ +..|++||..+- | +.+-..| .|+....|-..+.+. .+.|-.+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m----a-~sL~dtg--~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM----A-QSLMDTG--QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccchh----h-hhhhccc--ceeeeeccCcccccCCCCCceEEeeh
Confidence 4568999999999999999999988 889999998663 2 2222333 588888898888764 7889888864
Q ss_pred cccccccHHHHHHHHHhcc
Q 022810 139 MFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L 157 (291)
+ +.+..+-..+...|
T Consensus 279 V----EkP~rv~~li~~Wl 293 (358)
T COG2933 279 V----EKPARVAALIAKWL 293 (358)
T ss_pred h----cCcHHHHHHHHHHH
Confidence 3 44455555555543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.084 Score=45.82 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred CeEEEEccccCCc--cC-CCccEEEEccccccc----------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 114 NVEIIVADISTFE--ME-ASYDRIYSIEMFEHM----------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 114 ~i~~~~~d~~~~~--~~-~~~D~v~~~~~l~~~----------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+.+++++|+.+.. .+ +++|+|++++++... .-...++..+.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4568889988742 23 789999999876321 112468899999999999998853
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.26 Score=40.48 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
+..+.++...+.-.+.-|.+||.|.|+.++.+.+.. ..+...|+.++..+.-.+........ +..+..+|+..+.
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa~~-~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAAPG-KLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcCCc-ceEEeccccceeh
Confidence 445566666666677899999999999999998763 45788999999888877665554433 6777888876543
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.2 Score=39.28 Aligned_cols=95 Identities=12% Similarity=0.175 Sum_probs=59.6
Q ss_pred cCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---ccCCccC-CCcc
Q 022810 59 SRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---ISTFEME-ASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d---~~~~~~~-~~~D 132 (291)
+...++.+||-.|||. |..+..+++.. +. ++++++.++...+.+++ .+.+. ++..+ ....... ..+|
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA----MGADE--TVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhhhhhhccCCCcc
Confidence 3434788999998875 66777777765 66 79999998887664433 33321 11111 1111111 4589
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+..... ...++.+.+.|+++|.++..
T Consensus 234 ~vld~~g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 234 VVFEASGA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 98864321 23567888999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.28 Score=44.78 Aligned_cols=108 Identities=10% Similarity=0.049 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEccccC--CccC--CCccEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADIST--FEME--ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~-~~~~~i~~~~~d~~~--~~~~--~~~D~v~ 135 (291)
....+.|+|.|.|.-.-.+....++ ..++.||.+..|........+. .....+.+...-+.. .+.. ..||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4567899999987765555555433 4799999999999988877765 111111111101111 1222 5699999
Q ss_pred EcccccccccH----HHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+...++++.+. ...-....+..++|+.+++...+.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999888442 223334566778999888866554
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=92.78 E-value=2.8 Score=33.09 Aligned_cols=95 Identities=8% Similarity=-0.012 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---c--cCCCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---E--MEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~---~--~~~~~D~v~~~ 137 (291)
++.+|+-|||=+-.....- ...++.+++..|.+... ...+- + .|+.=|.... + ..++||+|++.
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFGG-D-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcCC-c-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 5689999999764433322 13357899999998763 22222 2 4555565542 1 12789999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++-.-+-.......++.++++++.+++.+.
T Consensus 94 PPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 94 PPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 9993333344566667777789898887654
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.82 Score=40.00 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
.++.+||=+||| .|.++..+++.. +++ |.++|.++..++.+... . ++ |..+. ....+|+|+-...
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~-~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD-PRRDYRAIYDASG 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc-cCCCCCEEEECCC
Confidence 356789999987 577778888776 665 77788888765554321 1 11 11110 1246888875422
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
....+..+.+.|+++|++++...
T Consensus 210 ------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------CHHHHHHHHHhhhcCcEEEEEee
Confidence 23467788889999999887543
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=2.9 Score=34.59 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 129 (291)
.+.+||-.|++ |.++..+++.+ .+.+|++++.++...+.+.+..... .++.++.+|+.+... -+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35789999886 44444444332 3789999999887665544433332 257888899876421 03
Q ss_pred CccEEEEccccccc---c--------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHM---K--------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~---~--------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..|.++.+...... . ....+++.+.+.++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46877766532111 0 112335555666677887666543
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.26 Score=43.47 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=49.1
Q ss_pred EEEEcCCcchHHHHHHHHCCCCEE-EEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022810 67 VLDVGCGWGSLSLYIAQKYSNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~p~~~v-~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~ 141 (291)
|+|+.||.|.++.-+.+. |.++ .++|+++.+++..+.++. . .+..+|+.++... ..+|+++...+-.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence 689999999999998866 6664 579999998877776652 2 3456787776532 4689998876543
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.86 Score=40.66 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=62.5
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc-cccC-Cc--cCC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DIST-FE--MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~-d~~~-~~--~~~ 129 (291)
....+.++.+||=.|+ |.|..+..+++.. +.+|++++.+++..+.+++ ..|.+.+ ..... +..+ .. .++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 3355678999999997 3778888888876 8899999988876555542 2343211 11101 1111 00 113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+-.. . ...+..+.+.|+++|.+++.
T Consensus 228 gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECC-----C--HHHHHHHHHHhccCCEEEEE
Confidence 578887532 1 23667788899999998764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.94 Score=33.12 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=53.5
Q ss_pred CCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEcccccccc
Q 022810 72 CGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 72 cG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~~~~l~~~~ 144 (291)
||.|..+..+++.. .+..|+.+|.+++.++.+++ . .+.++.+|..+... . ...|.|++...- .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~---d 73 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDD---D 73 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSS---H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCC---H
Confidence 56667777766543 24589999999997655543 3 36789999987531 2 577877775331 1
Q ss_pred cHHHHHHHHHhccccCeeEEEEee
Q 022810 145 NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.....+....+.+.|...++....
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEC
Confidence 122234445566778887776544
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.6 Score=41.49 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=58.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC---CccCCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST---FEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~---~~~~~~ 130 (291)
......++.+||=.|+| .|..+..+++.. +.+ |++++.+++..+.++ +.|.+.+ .....+... ......
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHhcCCC
Confidence 34456688899999986 455666677766 665 789999888766553 2343211 111111111 111135
Q ss_pred cc-EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D-~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+| +|+-.. . ....+....+.|++||.+++..
T Consensus 229 ~d~~v~d~~-----G-~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILETA-----G-VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEECC-----C-CHHHHHHHHHHhhcCCEEEEEc
Confidence 67 444321 1 1356788889999999987753
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=91.93 E-value=2.6 Score=36.93 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEE
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~v~ 135 (291)
....++.+||-.|+| .|..+..+++.. +.+|++++.+++..+.+++ .+.+. ++...-.... ..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADE--VVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcE--EeccCCcchHHhccCCCCEEE
Confidence 556788899999987 677777777765 7899999999887666532 23211 1111100000 114588887
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.... ....+..+.+.|+++|.++...
T Consensus 231 ~~~~------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVV------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCC------cHHHHHHHHHhcccCCEEEEEC
Confidence 6421 1245677788999999887643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.84 E-value=2 Score=38.81 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=60.4
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-----ccC-Cc--
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-----IST-FE-- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-----~~~-~~-- 126 (291)
+...+.++.+||=+|+| .|..+..+++.. +. +|+++|.+++.++.+++ .|.+. ++... ..+ ..
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH
Confidence 34567789999999987 456667777766 66 69999999987766643 34321 22111 111 00
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
..+.+|+|+-... ....+....+.+++| |.+++.
T Consensus 265 ~~~g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 265 TGGGVDYSFECAG------NVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred hCCCCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEE
Confidence 0125888876432 134667777788886 887664
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=91.81 E-value=2.5 Score=36.00 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=59.9
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccCCCccEE
Q 022810 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~-~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
.....++.+||-.|||. |..+..+++.. +.+ |++++.+++..+.+++ .+ .+.+..... .......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEA----LGPADPVAADTA---DEIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHH----cCCCccccccch---hhhcCCCCCEE
Confidence 45667889999998874 66777777766 667 9999998887665543 23 111110000 11112468988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+....- ...+....+.|+++|.++..
T Consensus 164 l~~~~~------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC------hHHHHHHHHHhcCCcEEEEE
Confidence 754211 23567778889999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=91.79 E-value=2.7 Score=37.41 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=59.4
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcc---ccC----CccC
Q 022810 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVAD---IST----FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d---~~~----~~~~ 128 (291)
...+.++.+||-+|||. |..+..+++.. +.+|+++|.+++.++.+++ .|.+. +.....+ +.+ ....
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhccc
Confidence 45667899999999964 66777777776 7789999999987766643 34321 1111111 100 0001
Q ss_pred CCcc----EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYD----RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D----~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+| +|+-. . .....+..+.+.|++||++++..
T Consensus 236 ~g~d~~~d~v~d~-----~-g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 236 RGLRSTGWKIFEC-----S-GSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCCcCEEEEC-----C-CChHHHHHHHHHHhcCCeEEEEC
Confidence 2344 44421 1 12346667778899999987753
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=91.66 E-value=2 Score=37.67 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccCC---ccC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DISTF---EME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~---d~~~~---~~~ 128 (291)
+...+.++.+||=.|. |.|..+..+++.. +.++++++.+++..+.++ ..|.+.+ +... +..+. ...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~v-i~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVA-FNYKTVKSLEETLKKASP 205 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEE-EeccccccHHHHHHHhCC
Confidence 4456778999999884 4778888888776 889999998888666554 3444221 1111 11110 011
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.+|+|+-.. . ...+....++|+++|.++..
T Consensus 206 ~gvdvv~d~~-----G--~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 206 DGYDCYFDNV-----G--GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCeEEEEECC-----C--HHHHHHHHHHhCcCcEEEEe
Confidence 4588877532 1 12457788899999998864
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.68 Score=41.02 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=64.8
Q ss_pred HHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCc----cC
Q 022810 56 CERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFE----ME 128 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~----~~ 128 (291)
.+...++++.+||=.|+ |.|.+++.|++.. +..++++-.+++..+ .+++.|.+. +.+...|+.+-. ..
T Consensus 135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGG 209 (326)
T ss_pred HHhcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCC
Confidence 34456788999999994 5678999999987 657667666665443 334445432 333333333321 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..+|+|+..-- ...+.+..+.|+++|.++....
T Consensus 210 ~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 210 KGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCceEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 36999987432 4566778888999999877543
|
|
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.3 Score=31.56 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=48.6
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~ 143 (291)
.+|| +-||+|..+..++++ .++.+++.|+ ++++...+..+.... ..+|+|+..+-+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~pqi--- 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEYGV-PVKIAAGSYGAAGEKLDDADVVLLAPQV--- 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHH------------------HHHHHHHCCC-cEEEEEecHHHHHhhcCCCCEEEECchH---
Confidence 4566 679999777766654 4566677777 577777777665333 578999987544
Q ss_pred ccHHHHHHHHHhccccCeeEE
Q 022810 144 KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG~l~ 164 (291)
...+.++.+.+.+-|+=+
T Consensus 61 ---~~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 61 ---AYMLPDLKKETDKKGIPV 78 (95)
T ss_pred ---HHHHHHHHHHhhhcCCCE
Confidence 445666666666655433
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.65 Score=41.95 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
++.+|+=+|+| .|..+...+... +++|+++|.++...+.+.... +. .+.....+...+... ..+|+|+.....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~---g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEF---GG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhc---Cc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45679999998 566666666665 789999999887554433221 21 122111111111111 568999975422
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+.+.-+-++..+.++|+++++-.
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 11111111235555668999876543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.38 E-value=4 Score=35.73 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----ccCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----EMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 129 (291)
....+.++.+||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++ .+.+ .++..+-... ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHHhcCC
Confidence 45566788999999876 366667777765 666 8899998887665532 3332 2222211111 1125
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|+++.... ....+..+.+.|+++|.++...
T Consensus 226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 6899986421 1356777788899999987643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.4 Score=37.88 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=49.1
Q ss_pred hHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHH
Q 022810 19 TSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT 98 (291)
Q Consensus 19 ~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~ 98 (291)
..++..+++. +.|+ ..|+.+...++ .+.+..+.+|.-||+|.-....++++. ..+|.+||+++.
T Consensus 33 erlf~vlFsg-LvYp-qiwEDp~Vdme------------am~~g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~a 96 (414)
T COG5379 33 ERLFGVLFSG-LVYP-QIWEDPSVDME------------AMQLGIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPA 96 (414)
T ss_pred HHHHHHHhcc-cccc-cccCCccccHH------------HHhcCCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHH
Confidence 4555555544 5564 45554433322 123457889999999977677777755 689999999999
Q ss_pred HHHHHHHHHH
Q 022810 99 QKEFIEEQCR 108 (291)
Q Consensus 99 ~~~~a~~~~~ 108 (291)
.+...+-+..
T Consensus 97 hiAln~lkla 106 (414)
T COG5379 97 HIALNRLKLA 106 (414)
T ss_pred HHHHHHHHHH
Confidence 9877655443
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.17 E-value=3.6 Score=35.83 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=59.8
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
....+.++.+||=.|+| .|..+..+++.. |.++++++.+++..+.+++ .|.+.+. +.........+|+|+
T Consensus 149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~----~~~~~~~~~~~d~vi 219 (319)
T cd08242 149 EQVPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVL----PDEAESEGGGFDVVV 219 (319)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEe----CccccccCCCCCEEE
Confidence 45567788999998865 344555556555 7889999999887766654 3432111 111111225689888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
-... ....+..+.+.|+++|.++.
T Consensus 220 d~~g------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 220 EATG------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ECCC------ChHHHHHHHHHhhcCCEEEE
Confidence 6421 13456777888999999876
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.08 E-value=2.4 Score=31.80 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=49.0
Q ss_pred CCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 64 GHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
..+|+|+|-|.=. .+..|++. |..|+++|+++. .+. . .+.++.-|+.+.... ...|+|.|..+-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIYEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHhcCCcEEEEeCCC
Confidence 4499999998654 56666666 799999999887 121 2 467889999886555 788999987654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
. +....+-++.+ +-|.-++|...+.+.
T Consensus 81 ~---El~~~il~lA~--~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 81 P---ELQPPILELAK--KVGADLIIRPLGGES 107 (127)
T ss_dssp T---TSHHHHHHHHH--HHT-EEEEE-BTTB-
T ss_pred h---HHhHHHHHHHH--HhCCCEEEECCCCCC
Confidence 2 33334444444 245667776655443
|
; PDB: 2K4M_A. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.1 Score=37.02 Aligned_cols=75 Identities=24% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~- 128 (291)
.|..||==|.|.|. .+..++++ ++++...|++++..+...+..++.| ++....+|+.+.. .+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57788888888773 56667776 7899999999999888888887765 6888899988753 12
Q ss_pred CCccEEEEccccc
Q 022810 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~v~~~~~l~ 141 (291)
+..|+++.+..+-
T Consensus 113 G~V~ILVNNAGI~ 125 (300)
T KOG1201|consen 113 GDVDILVNNAGIV 125 (300)
T ss_pred CCceEEEeccccc
Confidence 6789999887543
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.18 Score=41.33 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~ 107 (291)
.+++.+++.+...++...+|.--|.|.++..+.+++|..++++.|-+|-+.+.|....
T Consensus 30 Vm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 30 VMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred eehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 4678888888888999999999999999999999998899999999998777666544
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.3 Score=38.34 Aligned_cols=89 Identities=21% Similarity=0.153 Sum_probs=53.2
Q ss_pred CEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 65 HTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
.+|+=+|.| .|.++..+.+......+++.|.+...++.+.+ .++ .....+..........|+|+..-++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~~~~~~aD~VivavPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLAEAAAEADLVIVAVPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhhhhcccCCEEEEeccHH-
Confidence 567778877 46677777777555678999998876554432 222 11111111011114579998876653
Q ss_pred cccHHHHHHHHHhccccCeeE
Q 022810 143 MKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l 163 (291)
....+++++...|++|..+
T Consensus 76 --~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 --ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred --HHHHHHHHhcccCCCCCEE
Confidence 3456777777777776543
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=90.67 E-value=2 Score=37.55 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~ 128 (291)
......++.+||=.|+ |.|..+..+++.. +.+|++++.+++..+.+++ .|.+. ++...-.++. ..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~--vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDA--VFNYKTVSLEEALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCccHHHHHHHHCC
Confidence 4456778899998884 5677888888876 8899999988886665543 34422 1111111110 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+-.. . ...+....+.|+++|.++..
T Consensus 210 ~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEE
Confidence 4588877532 1 24567888899999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.63 E-value=2.8 Score=37.59 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEcc
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~ 138 (291)
..++.+||-.|+| .|..+..+++.. +.++++++.++..... .+++.|.+.+ +...+...... .+.+|+|+-..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~---~~~~~Ga~~v-i~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDE---AINRLGADSF-LVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhh---HHHhCCCcEE-EcCCCHHHHHhhcCCCCEEEECC
Confidence 4578899999987 466777777776 7888888877653222 2223343211 10111111110 13478777532
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. ....+....+.|+++|.++...
T Consensus 256 g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 S------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred C------CHHHHHHHHHHhcCCcEEEEeC
Confidence 1 1335777888999999987643
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.84 Score=40.49 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=54.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---C-CccEEEEcc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---A-SYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~-~~D~v~~~~ 138 (291)
..+++|+-||.|.+..-+... +.+ +.++|+++..++.-+.+... ..++..|+...... . .+|+++..+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCC
Confidence 468999999999999888876 554 67899999987776665532 45667777765433 2 789999987
Q ss_pred ccccc
Q 022810 139 MFEHM 143 (291)
Q Consensus 139 ~l~~~ 143 (291)
+-+.+
T Consensus 76 PCQ~F 80 (328)
T COG0270 76 PCQDF 80 (328)
T ss_pred CCcch
Confidence 66554
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.12 E-value=1.9 Score=39.00 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=47.3
Q ss_pred CEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022810 65 HTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 65 ~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~D~v~~~~~ 139 (291)
++||=|||| .|........+....+|+..|-|.+.++.+.... ..+++....|+.+.+.- ..+|+|++..+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----GGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----cccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 579999996 3443333322222379999999988665554432 23788999999886321 56799987654
Q ss_pred c
Q 022810 140 F 140 (291)
Q Consensus 140 l 140 (291)
.
T Consensus 78 ~ 78 (389)
T COG1748 78 P 78 (389)
T ss_pred c
Confidence 3
|
|
| >cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
Probab=90.05 E-value=1.4 Score=31.44 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred EcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHH
Q 022810 70 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQN 148 (291)
Q Consensus 70 iGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~ 148 (291)
+-||+|..+..++++ +++.+++.++ .+++...+..+.... ..+|+|++.+- ...
T Consensus 4 ~~Cg~G~sTS~~~~k------------------i~~~~~~~~~-~~~v~~~~~~~~~~~~~~~Diil~~Pq------v~~ 58 (96)
T cd05564 4 LVCSAGMSTSILVKK------------------MKKAAEKRGI-DAEIEAVPESELEEYIDDADVVLLGPQ------VRY 58 (96)
T ss_pred EEcCCCchHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhcCCCCEEEEChh------HHH
Confidence 458888877666554 5667777777 577888887665433 67999998743 344
Q ss_pred HHHHHHhccccCee
Q 022810 149 LLKKISKWMKEDTL 162 (291)
Q Consensus 149 ~l~~~~~~L~pgG~ 162 (291)
.+.++.+.+.+.++
T Consensus 59 ~~~~i~~~~~~~~~ 72 (96)
T cd05564 59 MLDEVKKKAAEYGI 72 (96)
T ss_pred HHHHHHHHhccCCC
Confidence 56666665555454
|
In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.99 E-value=3 Score=30.62 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=56.9
Q ss_pred CEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022810 65 HTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~ 141 (291)
.+|.|+|-|-=. .+..|+++ |+.++++|+++. ++. ..++++..|+.+.... ...|+|.|.-+-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~----~g~~~v~DDitnP~~~iY~~A~lIYSiRpp- 80 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP----EGLRFVVDDITNPNISIYEGADLIYSIRPP- 80 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc----ccceEEEccCCCccHHHhhCccceeecCCC-
Confidence 499999988543 56666666 899999999886 111 2578999999886655 678888886432
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++....+-++.+. -|..+++...+
T Consensus 81 --pEl~~~ildva~a--Vga~l~I~pL~ 104 (129)
T COG1255 81 --PELQSAILDVAKA--VGAPLYIKPLT 104 (129)
T ss_pred --HHHHHHHHHHHHh--hCCCEEEEecC
Confidence 3333444444443 34456665443
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.85 E-value=1.2 Score=39.33 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc----CCccCCC
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS----TFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~----~~~~~~~ 130 (291)
....+.++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++ .+.+.+ .....+.. .......
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCC
Confidence 345667888999998874 77777788776 8899999888887665533 232211 11111111 1111245
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+++.... -...+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 898886521 134567788899999997754
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.5 Score=38.86 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcc-------ccCCc
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD-------ISTFE 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d-------~~~~~ 126 (291)
....+.++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++ .+.+.+ .....+ +....
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455677899999888764 66777778776 666 8999888876665543 233211 111111 11111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+|+|+..... ...+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 11458988864321 235777888999999977543
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=1.5 Score=40.81 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=49.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------------
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------------- 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--------------- 127 (291)
..+++|+-||.|.+..-+... |. .|.++|+++.+.+.-+.|.... +....+.+|+.++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCccccccccchhhhhhhh
Confidence 569999999999999998766 54 5678999999777666654211 123344556655431
Q ss_pred --C-CCccEEEEccccc
Q 022810 128 --E-ASYDRIYSIEMFE 141 (291)
Q Consensus 128 --~-~~~D~v~~~~~l~ 141 (291)
. ..+|+++..++-+
T Consensus 164 ~~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQ 180 (467)
T ss_pred hccCCCCCEEEEcCCCC
Confidence 1 2578888766543
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.73 E-value=3 Score=37.63 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=58.3
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc----cccC-Cc--cC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DIST-FE--ME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~----d~~~-~~--~~ 128 (291)
...+.++.+||-.|+| .|..+..+++.. +. .|+++|.++...+.+++ .|.+.+ +-.. ++.. +. ..
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~----lGa~~~-i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKT----FGVTDF-INPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCcEE-EcccccchHHHHHHHHHhC
Confidence 3456789999999886 455666677665 66 58899988886665543 344211 1111 1111 00 01
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
+.+|+|+-... ....+....+.|++| |++++.
T Consensus 262 ~g~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVG------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCC------ChHHHHHHHHhhccCCCEEEEE
Confidence 35788775321 133567778888998 998764
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=89.73 E-value=3.4 Score=37.72 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..+.+|+=+|+|. |......++.+ +++|+++|.++.....+. ..|. .+ .+.++. -...|+|+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~----~~G~---~v--~~leea--l~~aDVVItaT-- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAA----MDGF---RV--MTMEEA--AKIGDIFITAT-- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHH----hcCC---Ee--CCHHHH--HhcCCEEEECC--
Confidence 4789999999995 55555555555 889999998886432222 2232 22 222221 14579987642
Q ss_pred cccccHHHHHH-HHHhccccCeeEEEEe
Q 022810 141 EHMKNYQNLLK-KISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~-~~~~~L~pgG~l~i~~ 167 (291)
....++. .....+|+|++++...
T Consensus 259 ----G~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 259 ----GNKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ----CCHHHHHHHHHhcCCCCcEEEEEC
Confidence 2244554 4778899999887653
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.1 Score=34.75 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=31.9
Q ss_pred EEcCCcc--hHHHHHH--HHCCCCEEEEEcCCHHHHHHHHHH--HHHhCC-CCeEEEEccc
Q 022810 69 DVGCGWG--SLSLYIA--QKYSNCKITGICNSKTQKEFIEEQ--CRVLEL-QNVEIIVADI 122 (291)
Q Consensus 69 DiGcG~G--~~~~~l~--~~~p~~~v~~vD~s~~~~~~a~~~--~~~~~~-~~i~~~~~d~ 122 (291)
|||++.| .....+. ...++.+|+++|+++..++..+.+ +..+.. ..+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6666553 345678999999999999988888 444322 1355554443
|
; PDB: 2PY6_A. |
| >cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria | Back alignment and domain information |
|---|
Probab=89.46 E-value=1.4 Score=31.58 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=51.6
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~ 144 (291)
+|| +-||.|..+..++++ .++.+++.|+ .+++......+.+.. ..+|+|+..+
T Consensus 2 ~Il-l~C~~GaSSs~la~k------------------m~~~a~~~gi-~~~i~a~~~~e~~~~~~~~Dvill~P------ 55 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANA------------------LNKGAKERGV-PLEAAAGAYGSHYDMIPDYDLVILAP------ 55 (99)
T ss_pred EEE-EECCCCCCHHHHHHH------------------HHHHHHHCCC-cEEEEEeeHHHHHHhccCCCEEEEcC------
Confidence 344 567888766666655 5666777787 577777777665544 6789888874
Q ss_pred cHHHHHHHHHhccccCeeEEEE
Q 022810 145 NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 145 ~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...-.+.++.+.+.+.|+-+..
T Consensus 56 Qv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 56 QMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred hHHHHHHHHHHHhhhcCCCEEE
Confidence 3455677788888888775443
|
In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.38 Score=40.24 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=35.8
Q ss_pred EEEEccccCC--ccC-CCccEEEEcccccc---------c------ccHHHHHHHHHhccccCeeEEEE
Q 022810 116 EIIVADISTF--EME-ASYDRIYSIEMFEH---------M------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 116 ~~~~~d~~~~--~~~-~~~D~v~~~~~l~~---------~------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++++|+.+. ..+ +++|+|+..++..- + .-....+.++.++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677787664 233 78999999887631 0 01246789999999999988763
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.81 Score=41.38 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=50.1
Q ss_pred hCCCCeEEEEccccCCcc---CCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 110 LELQNVEIIVADISTFEM---EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 110 ~~~~~i~~~~~d~~~~~~---~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++++++++.+++.+... ++++|.++......+++ ...+.++.+.+.++|||++++-....
T Consensus 272 ~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred cCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 345789999999988542 38999999999999984 56779999999999999999865543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=89.16 E-value=3.9 Score=36.71 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc----ccCCc---c
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD----ISTFE---M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d----~~~~~---~ 127 (291)
+...++++.+||=+|+| .|..+..+++.. +. +|+++|.+++.++.+++ .|.+. .+...+ ..... .
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~~~~v~~~~ 253 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK----FGATD-CVNPKDHDKPIQQVLVEMT 253 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCE-EEcccccchHHHHHHHHHh
Confidence 44566789999999876 455666677766 67 79999999987766543 34321 111111 11100 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 167 (291)
.+.+|+|+-... ....+....+.|+++ |.++...
T Consensus 254 ~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 254 DGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEc
Confidence 135888875321 134667778889887 8877643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=89.10 E-value=2.4 Score=37.42 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=62.4
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc-cccC-Cc--cCC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DIST-FE--MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~-d~~~-~~--~~~ 129 (291)
+...+.++.+||=.|+ |.|..+..+++.. |.++++++.+++..+.+++. .|.+.+ ..... +..+ .. ...
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 3456778999999986 4677888888876 88999999888766555432 343221 11111 1111 00 114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+-.. . ...+..+.+.|+++|.++..
T Consensus 221 gvd~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNV-----G--GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECC-----C--HHHHHHHHHHhccCcEEEEe
Confidence 578887531 1 24577888999999998764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=89.06 E-value=5.2 Score=35.64 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc-------cCCccCCCc
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI-------STFEMEASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~-------~~~~~~~~~ 131 (291)
.++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.++ +.+.+.+ .....+. ........+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 378889888875 355666677666 67 8999998887655443 3344221 1111111 111112468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|+-... ....+....+.|+++|.++...
T Consensus 251 d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 98885421 1245677788999999987643
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.4 Score=39.35 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=65.4
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~ 133 (291)
.++..+|.+|+|..|-.|.-+.+++...+ ..++.++|.+....+..++..+..|.+.+....+|+...+.+ .....
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeE
Confidence 35567889999999999999999887653 578999999999999999999999887788889998875333 34455
Q ss_pred EEEcccc
Q 022810 134 IYSIEMF 140 (291)
Q Consensus 134 v~~~~~l 140 (291)
|++.++.
T Consensus 288 iL~Dpsc 294 (413)
T KOG2360|consen 288 ILVDPSC 294 (413)
T ss_pred EEeCCCC
Confidence 6665543
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.5 Score=37.46 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=53.5
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc---------------cC--
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI---------------ST-- 124 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~---------------~~-- 124 (291)
++.+|+=+|.| .|.-+..++... +++++.+|..+..++... ......+.+...+- ..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLE----SLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHH----HTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhh----cccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 56899999999 467777777777 899999999887554433 22221222211000 00
Q ss_pred --CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022810 125 --FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 125 --~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
+... ..+|+|+.+..+..-..+.-+-++..+.|+||..++
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 0001 458998887665333334445556677788776543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.73 E-value=2 Score=37.59 Aligned_cols=101 Identities=23% Similarity=0.220 Sum_probs=59.3
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEE-EccccCCccCCCccEE
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEII-VADISTFEMEASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~-~~d~~~~~~~~~~D~v 134 (291)
..++.||.+|-=+|.| .|.++..+++.. +.+|+++|-+...-+. .++..|.+. +.+. ..|.-.- ..+..|.+
T Consensus 176 ~~g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkee---a~~~LGAd~fv~~~~d~d~~~~-~~~~~dg~ 250 (360)
T KOG0023|consen 176 RSGLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEE---AIKSLGADVFVDSTEDPDIMKA-IMKTTDGG 250 (360)
T ss_pred HcCCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHH---HHHhcCcceeEEecCCHHHHHH-HHHhhcCc
Confidence 3456688888777754 799999999988 8999999998754333 333344422 1111 1111110 01334443
Q ss_pred EEccc-ccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 135 YSIEM-FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+-.-+ + ....+..+.+.||++|.+++...
T Consensus 251 ~~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 251 IDTVSNL-----AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred ceeeeec-----cccchHHHHHHhhcCCEEEEEeC
Confidence 32111 1 13346667788999999877544
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=88.64 E-value=3 Score=38.11 Aligned_cols=101 Identities=10% Similarity=0.126 Sum_probs=60.2
Q ss_pred cCCCCCCEEEEEc-CC-cchHHHHHHHHCC-C-CEEEEEcCCHHHHHHHHHHHHHh----CCCCeEEEEc----cccC--
Q 022810 59 SRLEDGHTVLDVG-CG-WGSLSLYIAQKYS-N-CKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVA----DIST-- 124 (291)
Q Consensus 59 ~~~~~~~~vLDiG-cG-~G~~~~~l~~~~p-~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~i~~~~~----d~~~-- 124 (291)
..++++.+||=+| +| .|..+..+++... + .+|+++|.++..++.+++..... |. ...++.. +...
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATL 249 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHH
Confidence 4567788999887 34 6777887887641 2 37999999999888877642111 21 1111211 1111
Q ss_pred --CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 125 --FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
......+|+|+.... ....+....+.++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 111135888876321 135677788889988876553
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=88.59 E-value=3.4 Score=36.09 Aligned_cols=117 Identities=8% Similarity=0.051 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~~ 126 (291)
+.++..+...-...-..|+-||||--.-+-.+-.. ++.+|.=+|. |+.++.=++.+++.+. ...+.+..|+.+..
T Consensus 79 r~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~d 156 (297)
T COG3315 79 RYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDD 156 (297)
T ss_pred HHHHHHHHHHHHhcccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccc
Confidence 34455544332223578999999854433333221 1467888887 6677776667776664 25889999998432
Q ss_pred c----------CCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEee
Q 022810 127 M----------EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~----------~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ....-++++-+++.+++ ...+++..+.....||..+++...
T Consensus 157 w~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 157 WPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred hHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 1 13345788888888883 467799999999989988877654
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.58 E-value=6.8 Score=35.07 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=59.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcc--ccC-Cc--cC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD--IST-FE--ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d--~~~-~~--~~ 128 (291)
+...+.++.+||=+|+| .|..+..+++.. +. +|+++|.++...+.+++ .+.+.+ .....+ ..+ .. ..
T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC
Confidence 34566789999999886 455666677766 66 79999999887666643 343211 111100 000 00 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 167 (291)
..+|+|+-... ....+....+.|+++ |.+++..
T Consensus 253 ~g~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSFECTG------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEEECCC------ChHHHHHHHHhcccCCCEEEEEc
Confidence 35888875321 134567778888885 8877653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=2.8 Score=36.74 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=55.2
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CCeEEEEccccCCccCCCccEEEEc
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
++|+=+|+|. | .++..|++. +..|+.++-+.+.++..++. .|+ ................+.+|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 5799999983 4 456666654 78899999877655544431 122 0101111111111111578988764
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
-=- .+....++.+...+.++..++...
T Consensus 78 vK~---~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 78 CKA---YDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred CCH---HhHHHHHHHHHhhCCCCCEEEEEe
Confidence 322 135678888999999988766543
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.10 E-value=2.5 Score=36.59 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
...+..++.. ...++..|||.-+|+|..+....+. +..++|+|+++..++.+.++....
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 4455566655 5568999999999999999988876 889999999999999999988754
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=88.03 E-value=2.9 Score=33.56 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=53.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc----------CCC
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM----------EAS 130 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~~~----------~~~ 130 (291)
...|+.||||-=.....+....++.+++-+|. |+.++.-++.+.+.+. .+.+++.+|+.+... +..
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 34899999998888888877555678888887 5566665666555432 135678999886321 134
Q ss_pred ccEEEEcccccccc--cHHHHHHH
Q 022810 131 YDRIYSIEMFEHMK--NYQNLLKK 152 (291)
Q Consensus 131 ~D~v~~~~~l~~~~--~~~~~l~~ 152 (291)
.-++++-+++.+++ ....+++.
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHH
Confidence 55788888888884 33444443
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=87.97 E-value=11 Score=32.97 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.+.+|+=+|+|. |......++.. +++|+++|.++...+.+ ...+. +++ +..++... ..+|+|+..-+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~----~~~G~---~~~--~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARI----TEMGL---SPF--HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH----HHcCC---eee--cHHHHHHHhCCCCEEEECCCh
Confidence 588999999984 44444444444 78999999998754333 33333 222 12222111 578999985322
Q ss_pred cccccHHHHHHHHHhccccCeeEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.-+-+.+.+.++||++++
T Consensus 221 ------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 221 ------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred ------hhhhHHHHHcCCCCcEEE
Confidence 123345667788887654
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.92 E-value=6.4 Score=35.80 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=61.6
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccC----CccC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DIST----FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~---d~~~----~~~~ 128 (291)
...+.++.+||=.|+| .|..+..+++.. +.+ ++.+|.++..++.+++ .|.+ .+... +..+ ....
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 180 TAGVGPGSTVYIAGAGPVGLAAAASAQLL-GAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcCC
Confidence 3556788888888886 466666777765 555 6667888876666554 3442 12111 1111 1111
Q ss_pred CCccEEEEcccccc-------c-ccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEH-------M-KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~-------~-~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..+|+|+-.--... . .+....++...+.+++||.+++...
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 45888875332110 0 1223578888899999999887554
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=87.86 E-value=13 Score=32.46 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=57.9
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
....+.++.+||=.||| .|..+..+++.. +.++++++.+++..+.++ ..|.+ .++.. ... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~----~~g~~--~~~~~--~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAR----ELGAD--WAGDS--DDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHH----HhCCc--EEecc--Ccc-CCCcccEEE
Confidence 44556778888888876 234445555554 789999998887555553 23431 11111 111 124588877
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.... ....+..+.+.|+++|.++...
T Consensus 231 ~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 5321 1246888899999999988643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=7.8 Score=32.21 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~ 129 (291)
++.++|=.|+ +|.++..+++.+ .+.++++++.++.......+.....+ .++.++.+|+.+...- +
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678887775 455555554432 27899999988776665555544433 2688889998764310 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
+.|.|+.+..
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6798887653
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.78 E-value=4.1 Score=35.35 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=61.1
Q ss_pred CEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC----------CCeEEEEccccCC
Q 022810 65 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~i~~~~~d~~~~ 125 (291)
.+|-=||+|+ +..+..++.. |.+|+.+|.+++.++.+++++.+. +. .+++ ...|....
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 4788899984 3344455544 899999999999998877654321 11 1122 12333221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEeec
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~ 169 (291)
...|+|+-. +.+..+-...++..+.+.+ +|+.++.-.+..
T Consensus 83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 457888765 4444455567888888888 677766554443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.65 E-value=3.6 Score=36.35 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=59.1
Q ss_pred CCEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hCC------CCeEEEEccccCCccC
Q 022810 64 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL------QNVEIIVADISTFEME 128 (291)
Q Consensus 64 ~~~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-------~~~------~~i~~~~~d~~~~~~~ 128 (291)
-.+|-=||+|+ ...+..++.. |.+|+..|.+++.++.++..+.. .+. .++++. .++.+. -
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a--v 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC--V 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH--h
Confidence 35788999984 2344455544 89999999999987766554331 111 122221 122111 1
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
...|+|+-. +.+.+.-...+++++.+.++|+.++.-.+
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 456887764 33444445678899999999987544433
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.3 Score=37.50 Aligned_cols=96 Identities=11% Similarity=0.145 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---cc---CCccCC
Q 022810 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---IS---TFEMEA 129 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d---~~---~~~~~~ 129 (291)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.++ ..+.. .++..+ .. ......
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~--~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGAD--DTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCC--EEecCccccHHHHHHHhCCC
Confidence 44567888999998764 66777777765 676 999998887655543 23331 111111 11 111113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+... .....+..+.+.|+++|.++..
T Consensus 227 ~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 227 GADLVIEAA------GSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCEEEECC------CCHHHHHHHHHHhhcCCEEEEE
Confidence 589888641 1134667788899999997664
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.55 E-value=6.8 Score=31.38 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=60.0
Q ss_pred EEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccCCc
Q 022810 66 TVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTFE 126 (291)
Q Consensus 66 ~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~i~~~~~d~~~~~ 126 (291)
+|.=||+|+=+ ++..++.. |.+|+.+|.+++.++.+++.+... + ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 46668887532 33344443 899999999999998888766541 1 12344 34555443
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
...|+|+=. +.+.++-..++++++.+.+.|+-+|.-.+.+
T Consensus 77 --~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 --VDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp --CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred --hhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 256877754 2445566788999999999999987765544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.54 E-value=4.1 Score=36.80 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHH-HHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEcc
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~-~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~ 138 (291)
.++.+||-.|+| .|..+..+++.. +.++++++.+++. .+. +++.|.+.+ +...+...... ...+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~----a~~lGa~~~-i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREA----IDRLGADSF-LVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHH----HHhCCCcEE-EcCcCHHHHHHhhCCCcEEEECC
Confidence 478899999886 466777777776 7889999877543 222 233444211 11111111100 03478777532
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEE
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. ....+....+.++++|.++..
T Consensus 251 G------~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 251 S------AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred C------cHHHHHHHHHhhcCCCEEEEE
Confidence 1 234567778889999998764
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.46 E-value=3.1 Score=36.08 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=57.3
Q ss_pred EEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---CC--------------CCeEEEEccccCCc
Q 022810 66 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---EL--------------QNVEIIVADISTFE 126 (291)
Q Consensus 66 ~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~---~~--------------~~i~~~~~d~~~~~ 126 (291)
+|.=||+|. +..+..+++. +.+|+.+|.+++.++.+.+..... +. .++++ ..+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh-
Confidence 678888873 2344455544 789999999999988876543211 10 01221 2222211
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
-...|+|+..-+ ....-...++.++.+.++|+.++.+.+.+
T Consensus 79 -~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 145798886533 22222356778888888888766554443
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=9.7 Score=33.74 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
++.+||=.|++. .++..+++.+ .+.+|+.++.++..++...+.+...+. ++.++.+|+.+... . +
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 356788887654 4444443322 278999999988877766666655554 67888899876421 0 4
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68998877643
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.34 E-value=3.2 Score=38.56 Aligned_cols=99 Identities=7% Similarity=-0.010 Sum_probs=58.2
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 52 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
++.+++..+. ..+.+|+-+|+|. |......++.+ +.+|+++|.++.....+ ...|. .+. ++.+.. .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA----~~~G~---~vv--~leEal--~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQA----LMEGY---QVL--TLEDVV--S 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHH----HhcCC---eec--cHHHHH--h
Confidence 3444444333 4689999999984 54444444445 78999999988643222 22232 221 222211 4
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..|+|+....- ..-+.....+.||+||+++...
T Consensus 309 ~ADVVI~tTGt-----~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 309 EADIFVTTTGN-----KDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred hCCEEEECCCC-----ccchHHHHHhcCCCCCEEEEcC
Confidence 57999873221 2223467778899999987753
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=87.16 E-value=14 Score=33.49 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=62.0
Q ss_pred HHcCCCCCCEEEEEcCCcch----HHHHHHHHC---CCCEEEEEcC----CHHHHHHHHHHHH----HhCCCCeEEEEc-
Q 022810 57 ERSRLEDGHTVLDVGCGWGS----LSLYIAQKY---SNCKITGICN----SKTQKEFIEEQCR----VLELQNVEIIVA- 120 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~---p~~~v~~vD~----s~~~~~~a~~~~~----~~~~~~i~~~~~- 120 (291)
+.+.-.+...|+|+|.|.|. +...|+.+- |..++|+|+. +...++.+.+++. ..|+ ..+|...
T Consensus 104 eA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~~v~ 182 (374)
T PF03514_consen 104 EAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFHPVV 182 (374)
T ss_pred HHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEEecc
Confidence 33444566789999999995 334444432 4469999999 7777777666543 3455 4555442
Q ss_pred --cccCCccC----CCccEEE--Eccccccccc--------HHHHHHHHHhccccCeeEEEE
Q 022810 121 --DISTFEME----ASYDRIY--SIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 121 --d~~~~~~~----~~~D~v~--~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++++... .+=+.++ |...++++.+ ...+|+.++ .|+|.-++++.
T Consensus 183 ~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~vvv~~E 243 (374)
T PF03514_consen 183 VESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPKVVVLVE 243 (374)
T ss_pred cCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCCEEEEEe
Confidence 33333211 2222333 3445576631 234665555 58999766654
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=87.15 E-value=2.7 Score=37.16 Aligned_cols=95 Identities=18% Similarity=0.356 Sum_probs=58.8
Q ss_pred cCCCCC--CEEEEEcC--CcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------c
Q 022810 59 SRLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 127 (291)
Q Consensus 59 ~~~~~~--~~vLDiGc--G~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~ 127 (291)
..+.++ .+||=.|+ |.|..+..+++.. +. +|++++.+++..+.+++. .|.+. ++..+-.++. .
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~--vi~~~~~~~~~~i~~~~ 221 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDA--AINYKTDNVAERLRELC 221 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcE--EEECCCCCHHHHHHHHC
Confidence 345554 89998885 5778888888876 77 799999988766555442 34322 1111111110 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..+|+|+.... . ..+..+.+.|+++|.++..
T Consensus 222 ~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 222 PEGVDVYFDNVG-----G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred CCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEE
Confidence 145888875321 1 2357778899999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.09 E-value=13 Score=30.91 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCH-HHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSK-TQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~-~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----------- 128 (291)
.+.++|-.|+. |.++..+++.+ .+.+|++++.+. ...+......+..+. ++.++.+|+.+...-
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35688988864 34444444332 377888887653 223333333333332 577888998764310
Q ss_pred CCccEEEEccccccc-------------ccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|.|+.+...... .....+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 357888866532110 11345667777776666665553
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=8.3 Score=36.89 Aligned_cols=81 Identities=10% Similarity=0.140 Sum_probs=50.3
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHh-----CC---CCeEEEEccccCCcc
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVL-----EL---QNVEIIVADISTFEM 127 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~-----~~---~~i~~~~~d~~~~~~ 127 (291)
..+.+.+.+||-.|+. |.++..+++.+ .|.+|++++.+..........+... +. .++.++.+|+.+...
T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 3445577788887764 55555554432 3789999998877655443333221 11 257889999987431
Q ss_pred ---C-CCccEEEEccc
Q 022810 128 ---E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ---~-~~~D~v~~~~~ 139 (291)
. +..|+||++..
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 1 56899887653
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.01 E-value=1.9 Score=38.10 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCCc
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~----~~~~~~~ 131 (291)
....++.+||-.|+| .|..+..+++.. +. .+++++.++...+.+++ .+.+. +.....+..+ ......+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 345678899998876 466777778776 64 78888887776555443 23211 1111111111 1111468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+++....- ...+....+.|+++|.++..
T Consensus 238 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 988753211 24677888899999997654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=5.2 Score=36.80 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.+.+|+=+|+|. |......++.. +.+|+.+|.++.....+. ..|. .+ .++.+.. ...|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~----~~G~---~v--~~l~eal--~~aDVVI~aT--- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAA----MDGF---RV--MTMEEAA--ELGDIFVTAT--- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHH----hcCC---Ee--cCHHHHH--hCCCEEEECC---
Confidence 789999999984 44444444444 789999999886432221 2232 22 2222211 4689998742
Q ss_pred ccccHHHHHH-HHHhccccCeeEEEE
Q 022810 142 HMKNYQNLLK-KISKWMKEDTLLFVH 166 (291)
Q Consensus 142 ~~~~~~~~l~-~~~~~L~pgG~l~i~ 166 (291)
.....+. .....+|+|++++..
T Consensus 276 ---G~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 276 ---GNKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred ---CCHHHHHHHHHhcCCCCCEEEEc
Confidence 2234555 677889999987664
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.67 E-value=13 Score=33.19 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEccc
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~~ 139 (291)
.++.+||-.|+| .|..+..+++.. +.++++++.+++....+. +..|.+. .+...+...+.. ...+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~---~~~Ga~~-~i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEAL---EHLGADD-YLVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH---HhcCCcE-EecCCChHHHHHhcCCCcEEEECCC
Confidence 578889888875 466677777766 788888888776443332 2234321 111111111110 134787765321
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+..+.+.|+++|+++...
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEEC
Confidence 1346677788999999977643
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=86.54 E-value=6.1 Score=34.76 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCcc
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYD 132 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~D 132 (291)
.+...++.+||=.||| .|..+..+++.. +.++++++.+++..+.+++ .|.+. ++...-.+.. .. ..+|
T Consensus 158 ~~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~--~i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 158 NSGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARK----LGAHH--YIDTSKEDVAEALQELGGAK 230 (333)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----cCCcE--EecCCCccHHHHHHhcCCCC
Confidence 3466788899999975 455666667665 7899999998876665533 34321 1111111110 01 3478
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+++.... ....+..+.+.|+++|.++...
T Consensus 231 ~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 231 LILATAP------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEEECCC------chHHHHHHHHHcccCCEEEEEe
Confidence 8875311 1346777888999999977643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=5.3 Score=33.63 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~ 129 (291)
++.++|=.|+ +|.++..+++.+ .+.+|+.++.+....+.........+. ++.++.+|+.+...- +
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678898885 455555555442 278999999988776666555544433 677889998874211 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 67998887643
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.35 E-value=12 Score=32.38 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH-HHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~-~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----------- 128 (291)
.++++|-.|++.| ++..+++.+ .+.+|+.++.++. ..+.........+. ++.++.+|+.+...-
T Consensus 45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888887543 333333322 2788988877642 23333333333332 678888998763210
Q ss_pred CCccEEEEccc
Q 022810 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~v~~~~~ 139 (291)
...|+|+.+..
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 35798886653
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.30 E-value=2.8 Score=37.18 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC----CccCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~----~~~~~ 129 (291)
......++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++ .+.+.+ .....++.+ .....
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCC
Confidence 44566788899988865 355666667665 66 89999988887666543 343211 111111111 11113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|+|+-.... ...++.+.+.|+++|.++...
T Consensus 241 ~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC------HHHHHHHHHhccCCCEEEEEc
Confidence 48988864321 245677888999999976643
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=86.30 E-value=6.9 Score=33.24 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=52.3
Q ss_pred cCCCCCCEEEEEcCCcch----HHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccE
Q 022810 59 SRLEDGHTVLDVGCGWGS----LSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 133 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~----~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~ 133 (291)
+..+.+++||-+|.|+-. -+..|.+-+| ++-++-.|+..-. . +--..+.+|...+..+.++|+
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v--------S----Da~~~~~~Dc~t~~~~~k~Dl 124 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV--------S----DADQSIVGDCRTYMPPDKFDL 124 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-GGGEEESS-EEE
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc--------c----ccCCceeccccccCCCCcccE
Confidence 345678999999998532 3444555565 4566677775431 1 123457899999888899999
Q ss_pred EEEccc---cccc-------cc-HHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEM---FEHM-------KN-YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~---l~~~-------~~-~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++..- ...+ .. ...+..-++..|+-||.+++...
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 999753 1111 11 23345556778999999988654
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=86.29 E-value=3.8 Score=33.12 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=61.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (291)
+.+........+.+||-+|.- +|.....+..+ ..+|+.+|+.|.+..... ++++|... .. ..++.+
T Consensus 34 ~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp--------~~v~Fr~~--~~-~~~G~~ 100 (254)
T COG4017 34 QAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP--------NNVKFRNL--LK-FIRGEV 100 (254)
T ss_pred HHhhhhhcccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC--------CCccHhhh--cC-CCCCce
Confidence 333333344578899999986 78887777766 789999999997532221 24555443 11 223789
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+|+-.--+..+. +++|++ ++| +++++.+|..
T Consensus 101 DlivDlTGlGG~~--Pe~L~~----fnp-~vfiVEdP~g 132 (254)
T COG4017 101 DLIVDLTGLGGIE--PEFLAK----FNP-KVFIVEDPKG 132 (254)
T ss_pred eEEEeccccCCCC--HHHHhc----cCC-ceEEEECCCC
Confidence 9999876665553 334433 445 4667776654
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.26 E-value=6.8 Score=33.77 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=57.9
Q ss_pred CEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-------HHhCC-C---------CeEEEEccccCC
Q 022810 65 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL-Q---------NVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~-------~~~~~-~---------~i~~~~~d~~~~ 125 (291)
.+|.=||+|. +.++..++.. +.+|+++|.+++.++.+++.+ .+.+. + ++++ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 3678889983 4455556554 779999999999887655332 22221 1 2221 233222
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....|+|+..- -..+.-...+++++.+.++|+..+...+
T Consensus 80 --~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 --LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 14578888752 2222234578999999999888764433
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.24 E-value=7.5 Score=33.63 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=56.9
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--------CC----------CCeEEEEccccC
Q 022810 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------EL----------QNVEIIVADIST 124 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--------~~----------~~i~~~~~d~~~ 124 (291)
.+|.=||+|.-. ++..+++. +.+|+.+|.+++.++.+++..... .. .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 478888998533 34444443 789999999999888887653211 00 12222 233322
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
. -...|+|+..-+ ....-...+++++...++++.++..
T Consensus 81 a--~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 A--VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred H--hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 145688887533 2223356778888888877765544
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.13 E-value=7.8 Score=34.32 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=60.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc----CCccCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS----TFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~----~~~~~~ 129 (291)
....++++.+||-.|+| .|..+..+++.. +. .++++|.+++..+.+++ .|.+.+ .....+.. ......
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCC
Confidence 34566788999999876 456667777766 66 69999998876655543 343211 11111110 111114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+.... ....+..+.+.|+++|.++..
T Consensus 235 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGG------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence 5888875321 134678888899999997754
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.64 E-value=5.6 Score=33.52 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=77.2
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----CccCCCccEEEEcccccc
Q 022810 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-----~~~~~~~D~v~~~~~l~~ 142 (291)
|..=||+-.++..+.+. .-++.++|+.++-....++++. +..++++..+|-.. ++++++=-+|+..++++.
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 88899998888888766 6789999999998888887775 33479999998654 333466688999999988
Q ss_pred cccHHHHHHHHHhccc--cCeeEEEEeec
Q 022810 143 MKNYQNLLKKISKWMK--EDTLLFVHHFC 169 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~--pgG~l~i~~~~ 169 (291)
-.+++.+++.+.+.++ ++|+..|=.|.
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPi 197 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPI 197 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEee
Confidence 8888888888887776 68887774443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=85.53 E-value=13 Score=32.73 Aligned_cols=98 Identities=18% Similarity=0.134 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
.++.+|+-+|+|. |.............+|+.++.++.... +.+...+. .... ..+.... ..+|+|++.-.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~---~la~~~g~---~~~~--~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE---ELAKELGG---NAVP--LDELLELLNEADVVISATG 247 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH---HHHHHcCC---eEEe--HHHHHHHHhcCCEEEECCC
Confidence 4688999999973 433333332322468999999876432 22223332 2222 1121111 46899998765
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
-.+. ...+..+....+.++.+++....+
T Consensus 248 ~~~~---~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 248 APHY---AKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred CCch---HHHHHHHHhhCCCCCeEEEEeCCC
Confidence 4332 333444433333356666654433
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=85.42 E-value=3.2 Score=35.44 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=43.0
Q ss_pred HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhc
Q 022810 77 LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKW 156 (291)
Q Consensus 77 ~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~ 156 (291)
++..|.+..+..+|+|+|.++..++.++ +.|+ +.-...+.+.. ..+|+|+..-++. ....+++++...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~----~~g~--~~~~~~~~~~~---~~~DlvvlavP~~---~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL----ELGI--IDEASTDIEAV---EDADLVVLAVPVS---AIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH----HTTS--SSEEESHHHHG---GCCSEEEE-S-HH---HHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH----HCCC--eeeccCCHhHh---cCCCEEEEcCCHH---HHHHHHHHhhhh
Confidence 3567777766789999999999766554 3344 11112221111 4579998876653 345667777776
Q ss_pred cccCeeE
Q 022810 157 MKEDTLL 163 (291)
Q Consensus 157 L~pgG~l 163 (291)
+++|+.+
T Consensus 69 ~~~~~iv 75 (258)
T PF02153_consen 69 LKPGAIV 75 (258)
T ss_dssp S-TTSEE
T ss_pred cCCCcEE
Confidence 6666543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.38 E-value=14 Score=30.62 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.++|=.|+ +|.++..+++.+ .+.+|++++.++...+.........+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3567887774 455555554432 27899999988765555444443322 256778888876531 0 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999986653
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.05 E-value=7 Score=33.87 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=55.7
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----------CC----------CCeEEEEccc
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----------EL----------QNVEIIVADI 122 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~----------~~----------~~i~~~~~d~ 122 (291)
.+|.=||+|. | .++..++.. +.+|+.+|.+++.++.+++...+. +. .++.+ ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 4788899984 3 345555544 789999999999988766543321 11 01111 1222
Q ss_pred cCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022810 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 123 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.. -...|+|+..- .........+++++.+.++|+.+++
T Consensus 81 ~~---~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ES---LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH---hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 14568887753 2222234678888888888887654
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.74 E-value=13 Score=33.54 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=57.8
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-----cc----cCCcc
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA-----DI----STFEM 127 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-----d~----~~~~~ 127 (291)
..+.++.+||=.|+| .|..+..+++.. +. ++++++.++...+.++ +.|.+.+ +... +. .....
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~----~~g~~~~-v~~~~~~~~~~~~~v~~~~~ 272 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAK----EMGADYV-FNPTKMRDCLSGEKVMEVTK 272 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCEE-EcccccccccHHHHHHHhcC
Confidence 356788899888876 345556666665 66 7999998887544443 3444221 1111 11 11111
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+|+|+... .+....+..+.+.|+++|.++..
T Consensus 273 g~gvDvvld~~-----g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 273 GWGADIQVEAA-----GAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCEEEECC-----CCcHHHHHHHHHHHHcCCEEEEE
Confidence 24589887542 22245677788889999998764
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.61 E-value=7.8 Score=38.10 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 129 (291)
++.+||-.|++ |.++..+++.+ .+.+|+++|.++...+.+....... .++.++.+|+.+... -+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45788888864 33333333321 2789999999987766554443322 367888888876321 03
Q ss_pred CccEEEEcccccccc-------------------cHHHHHHHHHhcccc---CeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMK-------------------NYQNLLKKISKWMKE---DTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~-------------------~~~~~l~~~~~~L~p---gG~l~i~~ 167 (291)
.+|+|+.+....... ....+++.+.+.+++ +|.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 689998876432210 023455666666665 57666543
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.45 E-value=16 Score=30.87 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|-.|++. +.++..+++.+ .|.+|+.++.+....+.+++...+..-.++.++.+|+.+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467899999762 55555554432 378888886543222222222222211357788899876421 1
Q ss_pred CCccEEEEccc
Q 022810 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~v~~~~~ 139 (291)
++.|+++.+..
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 56898887653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=15 Score=31.03 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.++|-.|++. .++..+++.+ .|.+|+.++.++...+...+ ..+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 356888888644 4444443332 27899999988764443322 222 257888899876421 0 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6798887654
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.98 E-value=8.4 Score=31.93 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------------- 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------------- 126 (291)
++.++|-.||+ |.++..+++.+ .+.+|++++.++...+.....+...+...+.++..|+.+..
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 35789999864 44444444332 37899999998876665555544433224556667764321
Q ss_pred cCCCccEEEEccc
Q 022810 127 MEASYDRIYSIEM 139 (291)
Q Consensus 127 ~~~~~D~v~~~~~ 139 (291)
.....|.|+.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0035688887654
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.89 E-value=20 Score=30.60 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred EEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C-CCccEE
Q 022810 66 TVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-ASYDRI 134 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------~-~~~D~v 134 (291)
.+|=-|+ |.++..+++.+ .+.+|++++.++..++.+.+.....+. ++.++.+|+.+... . +..|++
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4555554 45666666553 368899999887766555554444333 67788888876421 1 468998
Q ss_pred EEccccccc-cc-----------HHHHHHHHHhccccCeeEEE
Q 022810 135 YSIEMFEHM-KN-----------YQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 135 ~~~~~l~~~-~~-----------~~~~l~~~~~~L~pgG~l~i 165 (291)
+.+..+... .+ .-.+++.+.+.++++|..++
T Consensus 81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 887654321 11 12244555555666665433
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.65 E-value=12 Score=32.87 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=57.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccCCCccE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EMEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~--~~~~~~D~ 133 (291)
..+...++.+||=.||| .|..+..+++.. +.++++++.+++..+.+++ .+.+. ++...-.+. .....+|+
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~d~ 235 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALK----LGADE--FIATKDPEAMKKAAGSLDL 235 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcE--EecCcchhhhhhccCCceE
Confidence 33456778888878874 455566666665 7899999998876665532 33321 111110010 11256888
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+....- ...+..+.+.|+++|.++...
T Consensus 236 v~~~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 236 IIDTVSA------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEECCCC------cchHHHHHHHhcCCCEEEEEe
Confidence 8753221 124567778889999877643
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=8.1 Score=32.12 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C--C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------~--~ 129 (291)
++.++|-.|++ |.++..+++.+ .+.+|+.++.++..++.+.+.....+. ++.++.+|+.+... . +
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46789988864 44444443322 278999999988766665555544433 67788888765321 0 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
+.|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 5799988654
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.59 E-value=6.6 Score=32.75 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------------~ 127 (291)
.++.+||=.|+ +|.++..+++.+ .+.+|++++.++...+...+.+...+..++.++.+|+.... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 36778998886 455554444332 27899999998876665555554444345677777775321 1
Q ss_pred C-CCccEEEEccc
Q 022810 128 E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ~-~~~D~v~~~~~ 139 (291)
. ++.|.|+.+..
T Consensus 89 ~~~~id~vi~~Ag 101 (247)
T PRK08945 89 QFGRLDGVLHNAG 101 (247)
T ss_pred HhCCCCEEEECCc
Confidence 1 46899887653
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=83.55 E-value=2.2 Score=36.14 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
++..+++.++..+..+++|+-||+|..+..+... +.+|+.-|+++..+...+..++.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHHHHHhc
Confidence 3455666555436789999999999999988764 78999999999988877755544
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.47 E-value=3.6 Score=36.89 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-------CccC
Q 022810 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-------~~~~ 128 (291)
...+.++.+||-.|+|. |..+..+++.. +. .+++++.++...+.+++ .+.+ .++..+-.. .. .
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~-~ 252 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREIT-G 252 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHh-C
Confidence 34566788999988763 66677777776 66 69999999886655543 3331 111111111 11 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+-... ....+..+.+.|+++|.++..
T Consensus 253 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALDTTG------VPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCCcEEEECCC------CcHHHHHHHHHhccCCEEEEe
Confidence 45888875321 124577888889999997764
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=4.9 Score=38.89 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=55.8
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~ 137 (291)
.+|+=+|+| ..+..+++.. .+.+++.+|.+++.++.+++ . ...++.+|..+.. .. ++.|.+++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 356666655 4544444321 27799999999998776653 2 3568899998753 12 577887774
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
..- -. ....+-...+.+.|...++...-+
T Consensus 472 ~~d--~~-~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 472 CNE--PE-DTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred eCC--HH-HHHHHHHHHHHHCCCCeEEEEeCC
Confidence 321 11 122233334557788887775443
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=15 Score=30.94 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=46.2
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-CCc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-ASY 131 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~~~ 131 (291)
.+||-.|+ +|.++..+++.+ .+.+|++++.++...+.+.+.....+. ++.++.+|+.+... . +..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46776665 445555554332 378999999987766655554444432 67888899877431 0 367
Q ss_pred cEEEEccc
Q 022810 132 DRIYSIEM 139 (291)
Q Consensus 132 D~v~~~~~ 139 (291)
|.|+.+..
T Consensus 80 d~vi~~ag 87 (263)
T PRK06181 80 DILVNNAG 87 (263)
T ss_pred CEEEECCC
Confidence 99887754
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=83.01 E-value=6.7 Score=30.56 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=54.7
Q ss_pred EEEEEcCCcchHHHH--HHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----C---CCeEEEEccccCCccCCCccEEEE
Q 022810 66 TVLDVGCGWGSLSLY--IAQKYSNCKITGICNSKTQKEFIEEQCRVLE----L---QNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~--l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~---~~i~~~~~d~~~~~~~~~~D~v~~ 136 (291)
+|.=||+|.+..+.. ++.+ +.+|+....+++.++..++.-.... . +++.+ ..|..+.. ...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--CcccEEEe
Confidence 466789987665443 3433 7899999999987777665432111 1 12332 33332211 55788887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.-+-. ..+.+++++...++++-.+++
T Consensus 76 avPs~---~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 76 AVPSQ---AHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -S-GG---GHHHHHHHHTTTSHTT-EEEE
T ss_pred cccHH---HHHHHHHHHhhccCCCCEEEE
Confidence 55443 347889999999977776665
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.65 E-value=6.3 Score=33.97 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=50.0
Q ss_pred EEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022810 66 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 143 (291)
+|.=||+|. |.++..+.+. +.+|+++|.++..++.+.+ .+. +.....+.. .....|+|+..-+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~----~g~--~~~~~~~~~---~~~~aDlVilavp~~~- 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE----RGL--VDEASTDLS---LLKDCDLVILALPIGL- 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CCC--cccccCCHh---HhcCCCEEEEcCCHHH-
Confidence 567788873 4456666554 7799999999987655543 232 111111211 1146799888765432
Q ss_pred ccHHHHHHHHHhccccCeeE
Q 022810 144 KNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG~l 163 (291)
...+++++...++|+.++
T Consensus 70 --~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 --LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --HHHHHHHHHHhCCCCcEE
Confidence 345677777777776433
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=82.57 E-value=18 Score=31.90 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=57.5
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccc----cCCccCCC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADI----STFEMEAS 130 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~----~~~~~~~~ 130 (291)
.....++.+||=.|+| .|..+..+++.. + .++++++.++...+.+++ .+.+. +.....+. ........
T Consensus 161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 161 NGKVKPGDTVAIVGAGPVGLAALLTAQLY-SPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCC
Confidence 3455678888888775 344555666665 6 789999988876555442 34321 11111111 11111146
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+|+... .. ...+..+.+.|+++|.++..
T Consensus 236 ~d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVIEAV-----GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEEECC-----CC-HHHHHHHHHhccCCcEEEEe
Confidence 89887532 11 33577788999999997654
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.55 E-value=19 Score=33.06 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=52.9
Q ss_pred CEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---------------HHHhCCCCeEEEEccccCCcc
Q 022810 65 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---------------CRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 65 ~~vLDiGcG~G--~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~---------------~~~~~~~~i~~~~~d~~~~~~ 127 (291)
++|.=||.|.- .++..|++. |.+|+++|.++..++..+.. ....| ..... .+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g--~l~~~-~~~----- 73 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG--YLRAT-TTP----- 73 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC--ceeee-ccc-----
Confidence 46888888843 344455555 78999999999977653210 00011 11111 111
Q ss_pred CCCccEEEEccccc-------ccccHHHHHHHHHhccccCeeEEEEe
Q 022810 128 EASYDRIYSIEMFE-------HMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~v~~~~~l~-------~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
...|+|+..-+-. .+......++.+...|++|.++++.+
T Consensus 74 -~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 74 -EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred -ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 2468887654431 22344566778888888877665543
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.14 E-value=20 Score=31.26 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC----CCccEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME----ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~----~~~D~v~ 135 (291)
.+++||-.| |+|.++..+++.+ .+.+|+++..++.............+. .++.++.+|+.+...- ...|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 357888887 4566666665543 367887776555433222222111122 3688899999875311 4579888
Q ss_pred Ecccc
Q 022810 136 SIEMF 140 (291)
Q Consensus 136 ~~~~l 140 (291)
.+...
T Consensus 83 h~A~~ 87 (325)
T PLN02989 83 HTASP 87 (325)
T ss_pred EeCCC
Confidence 76643
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.75 E-value=11 Score=32.66 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=51.9
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE---E-EEcc-ccCCccCCCccEEEEc
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE---I-IVAD-ISTFEMEASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~---~-~~~d-~~~~~~~~~~D~v~~~ 137 (291)
++|+=+|+|. | .++..|++. +.+|+.++.+++.++..++ .+. ++. . .... ..+......+|+|+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~~d~vila 73 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNE----NGL-RLEDGEITVPVLAADDPAELGPQDLVILA 73 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHH----cCC-cccCCceeecccCCCChhHcCCCCEEEEe
Confidence 3688899984 2 244445543 6799999987766554432 233 110 0 0000 1111111578988876
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
-.-. +...+++.+...+.++..++..
T Consensus 74 ~k~~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 74 VKAY---QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cccc---cHHHHHHHHhhhcCCCCEEEEe
Confidence 4432 4567888888888777665543
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.73 E-value=5.5 Score=35.26 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=63.0
Q ss_pred HHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc----cccCCc--
Q 022810 54 LYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DISTFE-- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~----d~~~~~-- 126 (291)
.++...+.+++.+|.-+||| .|..++.-++.....+++++|+++.-++.|++ .|. ..++.. |+-+..
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGA--T~~vn~~~~~~vv~~i~~ 249 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGA--THFVNPKEVDDVVEAIVE 249 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCC--ceeecchhhhhHHHHHHH
Confidence 34455667899999999998 46666666666645689999999998777765 333 112211 111110
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.+...|.++- ...+ ...++.....+.++|..++.-..
T Consensus 250 ~T~gG~d~~~e-----~~G~-~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 250 LTDGGADYAFE-----CVGN-VEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred hcCCCCCEEEE-----ccCC-HHHHHHHHHHHhcCCeEEEEecC
Confidence 1124555532 2222 23667777777779987775443
|
|
| >PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed | Back alignment and domain information |
|---|
Probab=81.62 E-value=7.2 Score=28.25 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=48.0
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEcccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEMFEH 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~v~~~~~l~~ 142 (291)
+|| +-||+|..+..++++ .++.+++.|+ .+.+...+..+.... ..+|+|++.+
T Consensus 3 kIL-lvCg~G~STSlla~k------------------~k~~~~e~gi-~~~i~a~~~~e~~~~~~~~~~DvIll~P---- 58 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK------------------TTEYLKEQGK-DIEVDAITATEGEKAIAAAEYDLYLVSP---- 58 (104)
T ss_pred EEE-EECCCchHHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhhccCCCCEEEECh----
Confidence 455 669999877766655 4556666777 577777776654321 4689999874
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+..-.+.++...+.+.|+-+.
T Consensus 59 --Qi~~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 59 --QTKMYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred --HHHHHHHHHHHHhhhcCCCEE
Confidence 334456677777766665333
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.54 E-value=25 Score=30.41 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=57.6
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC----------CCeEEEEccccCC
Q 022810 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~i~~~~~d~~~~ 125 (291)
.+|.=||+|.-. ++..++.. +.+|+.+|.+++.++.+.+..... +. .++++ ..|....
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLEDL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHHh
Confidence 578889998433 44445544 789999999999888765433221 21 12332 2233221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
...|+|+..-+ ....-...+++.+...++|+.+++..+.
T Consensus 82 ---~~aD~Vieavp-e~~~~k~~~~~~l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 82 ---ADCDLVIEAAT-EDETVKRKIFAQLCPVLKPEAILATNTS 120 (292)
T ss_pred ---cCCCEEEEcCc-CCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 45788877522 1112245678888888999887654333
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.36 E-value=31 Score=29.79 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH--HHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~--~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++ |.++..+++.+ .+.+|+.+..+.. ..+...+.....+. ++.++.+|+.+... .
T Consensus 54 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGAD-SGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHH
Confidence 46788888864 44444444332 2778877665432 22223333333333 57788899876421 0
Q ss_pred -CCccEEEEcccccc----cc-----c-----------HHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEH----MK-----N-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~----~~-----~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|+++.+..... +. + .-.+++.+.+.++++|.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 46899998765421 11 1 123555666677778876654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.31 E-value=13 Score=30.87 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~------~ 129 (291)
...++|-.|+ +|.++..+++.+ .+.+|++++.++...+...+..+..+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3567888885 455555554432 27799999998876655544444333 268888999877431 0 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|.++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999876643
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.30 E-value=5.8 Score=35.42 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cc----cCCccC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DI----STFEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~---d~----~~~~~~ 128 (291)
...+.++.+||-.|+| .|..+..+++.. +.+ |++++.++...+.++ ..+.+ .++.. +. ......
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~~~~ 249 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDLTDG 249 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHHcCC
Confidence 3456778899988875 466677777765 665 999988888665543 23331 11211 11 111112
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+|+++....- ...+..+.+.|+++|.++...
T Consensus 250 ~~vd~vld~~~~------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 250 RGADYAFEAVGR------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCEEEEcCCC------hHHHHHHHHHhhcCCeEEEEe
Confidence 458988753211 245677888899999987643
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=81.30 E-value=20 Score=27.38 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=50.3
Q ss_pred EEEEcCCc-chH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---------ccCCc--cCCCccE
Q 022810 67 VLDVGCGW-GSL-SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---------ISTFE--MEASYDR 133 (291)
Q Consensus 67 vLDiGcG~-G~~-~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d---------~~~~~--~~~~~D~ 133 (291)
|+=+|+|. |.+ +..|++ .+.+|+.+.-++ ..+. .++.++ ++...+ ..... ....+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~----~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEA----IKEQGL---TITGPDGDETVQPPIVISAPSADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHH----HHHHCE---EEEETTEEEEEEEEEEESSHGHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHh----hhheeE---EEEecccceecccccccCcchhccCCCcE
Confidence 45577762 433 333433 388999999877 4433 233332 222221 11111 1278999
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+..--- .+....++.+...+.|+..+++.
T Consensus 71 viv~vKa---~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 71 VIVAVKA---YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp EEE-SSG---GGHHHHHHHHCTGEETTEEEEEE
T ss_pred EEEEecc---cchHHHHHHHhhccCCCcEEEEE
Confidence 9876422 24577899999999999877664
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=80.87 E-value=2 Score=34.39 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=49.5
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.+.+|.=+|+| .|......++.+ +.+|+++|.+..... ..... .+ ...++.++. ...|+|+...++.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~----~~~~~---~~--~~~~l~ell--~~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEE----GADEF---GV--EYVSLDELL--AQADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHH----HHHHT---TE--EESSHHHHH--HH-SEEEE-SSSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhh----hcccc---cc--eeeehhhhc--chhhhhhhhhccc
Confidence 58899999997 355444455556 899999999987443 12221 12 233444432 4579988876652
Q ss_pred ccccHHH-HHHHHHhccccCeeEE
Q 022810 142 HMKNYQN-LLKKISKWMKEDTLLF 164 (291)
Q Consensus 142 ~~~~~~~-~l~~~~~~L~pgG~l~ 164 (291)
. .... +=++..+.||+|.+|+
T Consensus 103 ~--~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 103 P--ETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp T--TTTTSBSHHHHHTSTTTEEEE
T ss_pred c--ccceeeeeeeeeccccceEEE
Confidence 1 1111 1234456778877654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=80.83 E-value=16 Score=32.24 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEE-ccccC-Cc--cCCCc
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIV-ADIST-FE--MEASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~-~~~-~d~~~-~~--~~~~~ 131 (291)
...+.++.+||=.|+| .|..+..+++.. +.++++++.+++..+.++ +.|.+.+- ... .+... +. ..+.+
T Consensus 160 ~~~~~~~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 160 QARVKPGEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELAR----ELGAVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHH----HhCCCEEEccccchhHHHHHHHHhCCCC
Confidence 3456678899988875 455666677665 889999999888766653 23432111 111 11111 00 01268
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+..-. . ...+....+.|+++|.++..
T Consensus 235 d~vi~~~g-----~-~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 235 HVSVDALG-----I-PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Confidence 88876421 1 34567788889999987653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=80.63 E-value=18 Score=31.38 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=55.7
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-------HhCC----------CCeEEEEccccCC
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~-------~~~~----------~~i~~~~~d~~~~ 125 (291)
.+|.=||+|. | .++..++.. +.+|+++|.+++.++.+++.+. +.+. .++. ...+.+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEEL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHHh
Confidence 4688889883 2 344445544 7899999999998876655432 1111 0111 12222111
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
...|+|+..- .+.......++.++.+.++|+.+++.
T Consensus 82 ---~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 82 ---RDADFIIEAI-VESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred ---CCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 4568888752 22233456678888888888876553
|
|
| >KOG2811 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.41 E-value=6.9 Score=34.91 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=39.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEE---EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITG---ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~---vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
+..++|+|||-|.++.+++...+...++. +|-....+..=+.....+.. .+.-+..|++++.
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~-vi~R~riDI~dLk 247 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSL-VIKRIRIDIEDLK 247 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcc-hhheeEeeHHhcC
Confidence 36899999999999999998876666665 77655544433333222212 3444556666643
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=30 Score=29.35 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCcc-hH----HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------c
Q 022810 63 DGHTVLDVGCGWG-SL----SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G-~~----~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~ 127 (291)
.+.++|=.|++.| .+ +..+++. |.+|+.++.+....+.+.+..... +.+.++.+|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecchhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh
Confidence 4678899998652 44 4444444 788888887643223333322221 24567788887632 1
Q ss_pred C-CCccEEEEcccc
Q 022810 128 E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ~-~~~D~v~~~~~l 140 (291)
. +++|+++.+..+
T Consensus 81 ~~g~iD~linnAg~ 94 (262)
T PRK07984 81 VWPKFDGFVHSIGF 94 (262)
T ss_pred hcCCCCEEEECCcc
Confidence 1 468999987743
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.35 E-value=7.9 Score=34.12 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc---cCCccCCCccEE
Q 022810 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI---STFEMEASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~---~~~~~~~~~D~v 134 (291)
..++.+||-.|+|. |..+..+++.. +. ++++++.++...+.+++ .+.+.+ .....+. ......+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEE
Confidence 35778888877753 56677777766 66 78888777765544432 333111 1111111 111112468988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..-. ....+..+.+.|+++|.++..
T Consensus 236 ld~~g------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 236 LEMSG------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEE
Confidence 86421 134567778889999998654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.28 E-value=7.8 Score=34.78 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=60.7
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc----ccC-Cc--c
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD----IST-FE--M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d----~~~-~~--~ 127 (291)
+...++++.+||=.|+| .|..+..+++.. +. +|+++|.+++..+.+++ .|.+. .+...+ +.+ .. .
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~----~Ga~~-~i~~~~~~~~~~~~v~~~~ 252 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKK----LGATD-CVNPNDYDKPIQEVIVEIT 252 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCCe-EEcccccchhHHHHHHHHh
Confidence 44567789999999986 466777777776 66 79999999987766643 34321 111111 101 00 0
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 167 (291)
.+.+|+|+-... ....+....+.++++ |.+++..
T Consensus 253 ~~g~d~vid~~G------~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 253 DGGVDYSFECIG------NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCCEEEECCC------CHHHHHHHHHHhhcCCCeEEEEe
Confidence 135787775321 134567777888886 9877643
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.17 E-value=29 Score=31.63 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=26.0
Q ss_pred EEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022810 66 TVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 66 ~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~ 105 (291)
+|-=+|.| .|.....+... +.+|+++|.+++.++.+++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHc
Confidence 56667887 34333333333 7899999999998877765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 291 | ||||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 5e-18 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 8e-18 | ||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 1e-17 | ||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 6e-17 | ||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 4e-15 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 9e-15 | ||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 4e-07 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 7e-07 |
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 4e-53
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 15/244 (6%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY+L FF+L L YSC YF TL++A+ A ++L + L+ G T+LDVG
Sbjct: 13 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVG 72
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEAS 130
CGWG+ + +KY + + G+ SK Q +++ E +++A + +
Sbjct: 73 CGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE--QFDEP 129
Query: 131 YDRIYSIEMFEH--MKNYQNLLKKISKWMKEDTLLFVH--------HFCHKTFAYHFEDT 180
DRI SI FEH + Y + + D ++ +H + F
Sbjct: 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFA 189
Query: 181 NDDDWITKYFFTGGTMPS-ANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS 239
+I F GG +PS + + V HYA+T + W + N
Sbjct: 190 RFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQ 249
Query: 240 IKPI 243
+
Sbjct: 250 AIAL 253
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 3e-51
Identities = 59/252 (23%), Positives = 96/252 (38%), Gaps = 22/252 (8%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
HY+ FFKL L YSC YF TLE+A+ A +L ++ LE G T+LD+G
Sbjct: 21 RSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIG 80
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEAS 130
CGWGS + +Y + + G+ S+ Q + ++ E+ + E +
Sbjct: 81 CGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE--EFDEP 137
Query: 131 YDRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVH--------HFCHKTF 173
DRI S+ FEH + Y KK +D + +H
Sbjct: 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGL 197
Query: 174 AYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLKR 232
+I F GG +P + + Y+ + V+ + G +Y T W
Sbjct: 198 TSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADA 257
Query: 233 MDNNLASIKPIM 244
+ + +
Sbjct: 258 LQAHKDEAIALK 269
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 9e-51
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 15/242 (6%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
HY++ FF L YSC YF TLE+A+ A ++L ++ L+ G T+LD+GCG
Sbjct: 41 HYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCG 100
Query: 74 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 132
WG+ +++ + + G+ SK Q E+ ++ ++++ + D
Sbjct: 101 WGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE--DFAEPVD 157
Query: 133 RIYSIEMFEH--MKNYQNLLKKISKWMKEDTLLFVH--------HFCHKTFAYHFEDTND 182
RI SIE FEH +NY + K+ M D + V + FE
Sbjct: 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARF 217
Query: 183 DDWITKYFFTGGTMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241
+I F GG +PS +++ + V L HY +T W + +N
Sbjct: 218 IKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAI 277
Query: 242 PI 243
+
Sbjct: 278 EV 279
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 7e-41
Identities = 49/263 (18%), Positives = 98/263 (37%), Gaps = 26/263 (9%)
Query: 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGC 72
Q Y+ T F + G+ + + A +++DA + + + G VLDVGC
Sbjct: 11 QMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGC 70
Query: 73 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS--TFEMEA 129
G G ++ +A + ++TGI S+ Q + L N V AD FE +A
Sbjct: 71 GIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE-DA 128
Query: 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
S+D ++++E HM + L+++++ ++ + + F
Sbjct: 129 SFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLA-----PVEGAKKEAVDA 183
Query: 190 FFTGGTMPSANLLLYFQD--------DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241
F GG + S + ++ S VD + + + +N + ++
Sbjct: 184 FRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI----SAQARPSLVKTAEAFENARSQVE 239
Query: 242 PIMESTYGKDQAVKWTVYWRTFF 264
P G + + +R
Sbjct: 240 PF----MGAEGLDRMIATFRGLA 258
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 5e-38
Identities = 29/257 (11%), Positives = 73/257 (28%), Gaps = 21/257 (8%)
Query: 32 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 91
++ + R++ G +LD+G G G + A+ + T
Sbjct: 7 FTISESEHR--IHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGT 63
Query: 92 GICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLL 150
GI S + + L + V I D + + D + +
Sbjct: 64 GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 123
Query: 151 KKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPS-ANLLLYFQDDV 209
+ +++ +K ++ + + ++ + + L+ F D
Sbjct: 124 ELLAQSLKPGGIMLIGEPYWRQ-----LPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG 178
Query: 210 SVVDHWLVNG-----KHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWR--- 261
V ++ ++ A + ++ N ++ Y R
Sbjct: 179 YDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECF 238
Query: 262 --TFFIAVAEL-FGYNN 275
F +A L +++
Sbjct: 239 GWGVFALIARLEHHHHH 255
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-33
Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 17/242 (7%)
Query: 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER-SRLEDGHTVLDVGC 72
HY + + L E A E + + T++D GC
Sbjct: 70 HYGIGPVDRAALGDPEHSEYEKKVIA---ELHRLESAQAEFLMDHLGQAGPDDTLVDAGC 126
Query: 73 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASY 131
G G + +++ ++ G+ S Q +F + R L + + V V ++ +
Sbjct: 127 GRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML--DTPFDK 183
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 189
+ + E + +L + S+++K C + + + I +
Sbjct: 184 GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWN--PRYGQPSKWVSQINAH 241
Query: 190 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS-IKPIMESTY 248
F + S L D +V H +V+ T W R ++L + I+ +Y
Sbjct: 242 FECN--IHSRREYLRAMADNRLVPHTIVD--LTPDTLPYWELRATSSLVTGIEKAFIESY 297
Query: 249 GK 250
Sbjct: 298 RD 299
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-32
Identities = 49/291 (16%), Positives = 88/291 (30%), Gaps = 40/291 (13%)
Query: 4 AIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLED 63
+ +T Q+ + ++ + G+ + + + L +
Sbjct: 9 SDKTFLENNQYTDEGVKVYEFIFGENY-------------ISSGGLEATKKILSDIELNE 55
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
VLD+G G G +YI +KY GI E RV + DI
Sbjct: 56 NSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANE--RVSGNNKIIFEANDIL 112
Query: 124 TFEME-ASYDRIYSIEMFE--HMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT 180
T E ++D IYS + ++N L +K KW+K L + +C E
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT------EKE 166
Query: 181 NDDDWITKYFFTGG-TMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLKRMDNNLA 238
N DD +Y T+ + + ++ Q E K + N
Sbjct: 167 NWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKE 226
Query: 239 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGE-EWMVTHFLFRK 288
+ + + + + W + W +F K
Sbjct: 227 EFLKL----FSEKKFISLDDGWSRK------IKDSKRKMQRWG--YFKATK 265
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-31
Identities = 41/293 (13%), Positives = 88/293 (30%), Gaps = 39/293 (13%)
Query: 12 EQHYELPTS--FFKLVLGKYFKYSCCYFSDAS-KTLEDAEKAMLELYCER----SRLEDG 64
E +Y+ S F+ V G + Y + +A E L+
Sbjct: 24 EIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQ 83
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS 123
LD+G G+G + ++ +K+ I + + Q + EE L + + +
Sbjct: 84 AKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 142
Query: 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
E SYD I+S + F H + + ++ ++ +K ++ + + + ++
Sbjct: 143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE---DGIDKSSI 199
Query: 183 DDWITKYFFTGGTMPSANLLLYFQ-------DDVSVVDHWLVNGKHYAQTSEEWLKRMDN 235
+ + M S LY + + +
Sbjct: 200 QPILDRIKLHD--MGSLG--LYRSLAKECGLVTLRTFSR----PDSLVHHYSKVKAELIK 251
Query: 236 NLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
+ I + + + + G G+ LFRK
Sbjct: 252 RSSEIASFCSPEFQANMKRGLEHW----------IEGGRAGKLTWG-GMLFRK 293
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 4e-24
Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 14/184 (7%)
Query: 36 YFSDASKTLEDAEKAMLELYCER--------SRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87
F S ++ + + + + S + +LD+G G G LS ++ +KY
Sbjct: 9 KFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE 68
Query: 88 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN-- 145
T + S+ E + + R V+ I AD S ++ E YD + S H+++
Sbjct: 69 ATFTLVDMSEKMLEIAKNRFR--GNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDED 126
Query: 146 YQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYF 205
+ L K+ +KE + H A+ E+ N W +Y G Y
Sbjct: 127 KKELYKRSYSILKESGIFINADLVHGETAF-IENLNKTIW-RQYVENSGLTEEEIAAGYE 184
Query: 206 QDDV 209
+ +
Sbjct: 185 RSKL 188
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 2e-19
Identities = 44/258 (17%), Positives = 95/258 (36%), Gaps = 26/258 (10%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
Y + L + + + +L + G VL+ GCG G+ ++ +A+ + +IT I
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDI 69
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
S E E ++NV+ + A+I + FE ++S+D I+ + EH+++ + LK +
Sbjct: 70 SPESLEKARENTEKNGIKNVKFLQANIFSLPFE-DSSFDHIFVCFVLEHLQSPEEALKSL 128
Query: 154 SKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF-----FTGGTMPSANLLLYFQD- 207
K +K + V H + +H E + G ++ + Q+
Sbjct: 129 KKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQES 188
Query: 208 ---DVSVVDHWLVNGKHYAQTSEEWLKRMDNNL-ASIKPIMESTYG--KDQAVKWTVYWR 261
+ V + + + ++ + + +K +++ K
Sbjct: 189 GFEKIRVEPRMVYIDSSKPELVDGFILKTIIPMVEGVKEQSLKMQIIKEEEWEKGIEELH 248
Query: 262 -----------TFFIAVA 268
TFF
Sbjct: 249 KTAEHGGTFCYTFFKGWG 266
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-17
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Query: 29 YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 88
F + C YF + + +A + + L D + D+GCG G +L++A
Sbjct: 12 DFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYV-KG 70
Query: 89 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 146
+ITGI E E V+ I + + D I+S ++ +
Sbjct: 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GF 129
Query: 147 QNLLKKISKWMKEDTLLFVHHFCHKT 172
+ + + SK++K+ + V T
Sbjct: 130 ERGMNEWSKYLKKGGFIAVSEASWFT 155
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 4e-14
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
E ++ LD+GCG G SLY+A + + +E + L N+
Sbjct: 26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLH 83
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 171
V D++ + YD I S + + K L+ + + K +
Sbjct: 84 TRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 140
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 4e-14
Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 36/239 (15%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ LE D+GCG G+ + + +Y ITGI + + +E+ L N
Sbjct: 27 AQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSD---DDMLEKAAD--RLPNTN 81
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV---HHFCHKTF 173
AD++T++ D +Y+ +F+ + ++ +L ++ ++ +L V + T
Sbjct: 82 FGKADLATWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTH 141
Query: 174 AYHFEDTNDDDW---ITKYFFTGGTMPS----ANLLLYFQDDVSVVDHWL---VNGKHYA 223
E + W + +P N L S VD W + A
Sbjct: 142 IAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNAL---SPKSSRVDVWHTVYNHPMKDA 198
Query: 224 QTSEEWLKRM--------------DNNLASIKPIMESTYGKDQAVKWTV-YWRTFFIAV 267
+ EW+K + LA + + Y + + + R F +AV
Sbjct: 199 DSIVEWVKGTGLRPYLAAAGEENREAFLADYTRRIAAAYPPMADGRLLLRFPRLFVVAV 257
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 5e-14
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109
A+ + +++ VLD+GCG G SLY++ +T +++ F+ E
Sbjct: 107 AIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEK 164
Query: 110 LELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167
L N+ + DI+ ++ +YD I S +F + + +++K + + +
Sbjct: 165 ENL-NISTALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223
Query: 168 F 168
Sbjct: 224 A 224
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 8e-14
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 5/142 (3%)
Query: 32 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKI 90
++ L E+ + L G V V CGW S L + ++
Sbjct: 87 LERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQL 146
Query: 91 TGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHM---KNY 146
GI + L + + D + YD + S + +
Sbjct: 147 VGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARV 206
Query: 147 QNLLKKISKWMKEDTLLFVHHF 168
L ++ + +K L
Sbjct: 207 TELYRRFWQALKPGGALVTSFL 228
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
++ VLD+GC G+L I + +++GI E E + + +++ D
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKEN--GTRVSGI-------EAFPEAAEQAKEKLDHVVLGD 81
Query: 122 ISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
I T +M E +D + ++ EH+ + +++K+ ++K++ ++
Sbjct: 82 IETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 3e-13
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 8/152 (5%)
Query: 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 106
+ + + TVLD G G L I + K GI S Q + E
Sbjct: 7 RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED-GYKTYGIEISDLQLKKAENF 65
Query: 107 CRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTL 162
R + I DI F+ + S +YS HM+ + + + +I + +K L
Sbjct: 66 SRENNF-KLNISKGDIRKLPFK-DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL 123
Query: 163 LFVHHFCHKTFAY-HFEDTNDDDWITKYFFTG 193
++ K Y E + +++
Sbjct: 124 ACINFLTTKDERYNKGEKIGEGEFLQLERGEK 155
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-12
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 17/213 (7%)
Query: 27 GKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86
+Y++ Y S+ + + L ++ VLD+ CG G S +
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLL--MKYMKKRGKVLDLACGVGGFSFLLEDY-- 59
Query: 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM-- 143
++ G+ S+ E + E NVE IV D E ++D + I+ H
Sbjct: 60 GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 118
Query: 144 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT---NDDDWITKYFFTGGTMPSAN 200
+ K++ + +K ++ + +++ WI+K P
Sbjct: 119 LELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVI------PDQE 172
Query: 201 LLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRM 233
+ S D + V + +T E L ++
Sbjct: 173 ERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKL 205
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 5e-12
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 15/170 (8%)
Query: 36 YFSDASKTLEDAE--KAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKIT 91
+F S+ E KA E + + L D TVLD+GCG+G +Y A+ + K+
Sbjct: 13 FFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVL 71
Query: 92 GICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLL 150
GI S+ + E R V I +E +Y+ + S ++ ++ ++
Sbjct: 72 GIDLSERM---LTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDIC 128
Query: 151 KKISKWMKEDTLLF--VHHFCHKTFA----YHFEDTNDDDWITKYFFTGG 194
KK+ +K V H Y E N W +F
Sbjct: 129 KKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNES 178
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 5e-12
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104
E KA+ + L + + D+GCG G ++ +A ++TG+ +
Sbjct: 32 EVTLKALSFI----DNLTEKSLIADIGCGTGGQTMVLAGHV-TGQVTGLDFLSGFIDIFN 86
Query: 105 EQCRVLELQN-VEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
R LQN V IV + F D I+S ++ ++ L + K++K+
Sbjct: 87 RNARQSGLQNRVTGIVGSMDDLPFR-NEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGG 144
Query: 162 LLFVHHFCHKTFAYHFEDTNDDDWITKY 189
L V T E +D W+ Y
Sbjct: 145 YLAVSECSWFTDERPAE--INDFWMDAY 170
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 6e-12
Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 38 SDASKTLEDAEKAMLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
+ K + + ++ + R+ +L++G G + + + IT +
Sbjct: 15 TAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH--FNDITCVEA 72
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKI-S 154
S+ + + + + I + ++ YD I + EH+ + LLK+I
Sbjct: 73 SEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRIND 128
Query: 155 KWMKEDTLLFV-----HHFCHKTFAYHFEDTNDDDWITKYFFTG 193
W+ E LF+ + + +++ F G
Sbjct: 129 DWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG 172
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-11
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNV 115
++ ++D GCG+G L L + K TGI + +T E R+L +
Sbjct: 16 TVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DS 74
Query: 116 EIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 175
E + D + E+ YD HM + +L+K+ +K+ + +
Sbjct: 75 EFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMA 134
Query: 176 HFE 178
+
Sbjct: 135 SYL 137
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 45/241 (18%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ + G +LD+GCG G L+ IAQ S ++ G N+ I E+ R ++
Sbjct: 51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNA---ATMI-EKARQ-NYPHLH 103
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 176
VAD F ++ D ++S M +K + + I + +K Y
Sbjct: 104 FDVADARNFRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYI 163
Query: 177 FEDTNDDDWITKYFFTGGTMPS--------ANLL----------------LYFQDDVSVV 212
E + P N+L + +
Sbjct: 164 LEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEFGM 223
Query: 213 DHWLVNGKHYAQTSEEWLKRMDNN-----LASIKPIMESTYGKDQAVKWTV-YWRTFFIA 266
+W+ + +L + + + ++ ++ + WT Y R ++
Sbjct: 224 ANWI------QMFASAFLVGLTPDQQVQLIRKVEATLQDKLYHQE--SWTADYRRIRIVS 275
Query: 267 V 267
+
Sbjct: 276 I 276
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-10
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 15/135 (11%)
Query: 45 EDAEKAMLELY-------CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK 97
E A + + L + + V+D+GCG G+L + + +ITG+ S
Sbjct: 4 EAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSY 63
Query: 98 TQKEFIEEQCRVLELQ-----NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQ--NL 149
E +E+ L L +++I ++ + YD IE+ EH+ +
Sbjct: 64 RSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAF 123
Query: 150 LKKISKWMKEDTLLF 164
+ + ++ + ++
Sbjct: 124 ERVLFEFAQPKIVIV 138
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-10
Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
Y + ++ A A LE VL++ G G + +++ ++T +
Sbjct: 22 YDATFVPYMDSAAPAALE---RLRAGNIRGDVLELASGTGYWTRHLSGLA--DRVTALDG 76
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKI 153
S E I + L NVE D+ + + +D ++ H+ + ++ + +
Sbjct: 77 S---AEMI-AEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESV 132
Query: 154 SKWMKED-TLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGT 195
+ + FV H+ +D+ + + + G +
Sbjct: 133 RSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRS 175
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 6e-10
Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE-QCRVLELQNVEIIVA 120
LD G G G ++ + K + K +EE + + + + I+A
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPV---KHMLEEAKRELAGMPVGKFILA 147
Query: 121 DISTFEMEA-SYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHKTFAYHF 177
+ T + +YD I ++ + K + + + +F C +
Sbjct: 148 SMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV 207
Query: 178 EDTN 181
+ +
Sbjct: 208 DKED 211
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 9e-10
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 22/163 (13%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
+ +LE +S VL+ G G G+L+ + + GI S +E
Sbjct: 32 AHYEDILEDVVNKS----FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPS---REMR-M 81
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLL 163
+ + I D +FE+ S D I S F H+ + + + K S+ + + +
Sbjct: 82 IAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKI 141
Query: 164 FVHHFCHKTFAYHFEDTND----------DDWITKYFFTGGTM 196
+ + +D T+Y+ M
Sbjct: 142 VFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 37 FSDASKTLEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 94
+ + L+ A E R+ L + G ++D+GCG+G + + ++ + G+
Sbjct: 19 LGRSIEGLDGA----AEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGAS-YVLGLD 73
Query: 95 NSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQNLLKKI 153
S+ + + AD+ + + S+D YS ++++ L + +
Sbjct: 74 LSEKM---LARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTV 130
Query: 154 SKWMKED-TLLFVHHFCHKTF----AYHFEDTNDDDWITKYFFTGGTM 196
+ + +F + + W + G
Sbjct: 131 HQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPR 178
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 1e-09
Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 20/178 (11%)
Query: 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104
+++L ++D CG G+ + +++Q + ++ G+ S K +E
Sbjct: 38 NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVS---KSALE 92
Query: 105 EQCRVLELQNVEIIVADISTFEMEASYD------RIYSIEMFEHM--KNYQNLLKKISKW 156
+ N+ + D E A IY F H+ + + L + +
Sbjct: 93 IAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRIL 152
Query: 157 MKEDTLLFVHHFCHKTFAYHFEDTNDDDWI-------TKYFFTGGTMPSANLLLYFQD 207
+ + +++ + + ++ G + ++ LYF D
Sbjct: 153 LGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFPD 210
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-09
Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
+L+ R G + +G G L+ + ++ + E +
Sbjct: 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRK 164
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
L + V +I D + + +D + + + + + + I +++ +T +
Sbjct: 165 VIEGLGVDGVNVITGDETVID-GLEFDVLM---VAALAEPKRRVFRNIHRYVDTETRIIY 220
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-09
Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 102
+LE E+ + ++ ++D GCG G Y+ + + K+ I + +
Sbjct: 2 SLERPEEYLPNIF-----EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKE 54
Query: 103 IEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL 162
++E+ + I ++D + S D I F M + Q+++ ++ + +K+D
Sbjct: 55 VKEKF------DSVITLSDPKEIP-DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGR 107
Query: 163 LFVHHFCHK 171
+ + + +
Sbjct: 108 VIIIDWRKE 116
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 18/152 (11%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
++E G + D+GCG G+ +L +A Y ++TG+ S+ E +E+ +V+
Sbjct: 28 LEQVEPGKRIADIGCGTGTATLLLADHY---EVTGVDLSEEMLEIAQEKAMETNR-HVDF 83
Query: 118 IVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKEDTLL---------F 164
V D+ E+ D I S+ + + + ++ + + L
Sbjct: 84 WVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM 143
Query: 165 VHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM 196
F KT+A H E ++ W ++
Sbjct: 144 ETLFNGKTYATHAEQSS-YIWFADPGEEPLSV 174
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-08
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 28 KYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87
K + S +++ S+ + D+ + ++ VLDVGCG G + +++
Sbjct: 18 KKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG-- 75
Query: 88 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKN 145
K G+ S + I++ E ++ I D+S+ FE ++ I +I E +
Sbjct: 76 YKAVGVDIS---EVMIQKGKERGEGPDLSFIKGDLSSLPFE-NEQFEAIMAINSLEWTEE 131
Query: 146 YQNLLK 151
L
Sbjct: 132 PLRALN 137
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 26/179 (14%)
Query: 33 SCCYFSDASKTLEDAEKAMLELYCER----------SRLEDGHTVLDVGCGWGSLSLYIA 82
+C + ++ + + E+ +G TVLD+GCG G +
Sbjct: 43 ACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLAS 102
Query: 83 QKY-SNCKITGICNS--------KTQKEFIEEQCRVLELQNVEIIVADISTFEM------ 127
+ + K+ G+ K + E+ NV + I
Sbjct: 103 KLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162
Query: 128 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDW 185
++S D + S + N L K+I + +++ L+ + +
Sbjct: 163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILY 221
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
F + + + KA L Y + VLD+GCG G ++ + G+
Sbjct: 16 LFEEKFRGSRELVKARLRRYIPY--FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDI 71
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKI 153
++ +F E + V++ +E + + + D + EH+ LL
Sbjct: 72 NEDMIKFCEGKFNVVKSDAIE----YLKSLP-DKYLDGVMISHFVEHLDPERLFELLSLC 126
Query: 154 SKWMKEDTLLFV 165
MK + + +
Sbjct: 127 YSKMKYSSYIVI 138
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 9/118 (7%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
L++GC G+ + +A C ++T I ++ + ++ DI
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTK--RWSHISWAATDI 106
Query: 123 STFEMEASYDRIYSIEMFEHMKNYQNL---LKKISKWMKEDTLLFVHHFCHKTFAYHF 177
F +D I E+ ++++ + + + K + L T
Sbjct: 107 LQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWG 164
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 5e-08
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
+ RL+D + D+G G S+S+ + N +I + + FI + + +NV +
Sbjct: 35 KLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTL 94
Query: 118 IVADI-STFEMEASYDRIY 135
+ A + DR++
Sbjct: 95 VEAFAPEGLDDLPDPDRVF 113
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-08
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 19/174 (10%)
Query: 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII 118
L G +L++GCG G + + + S E E +
Sbjct: 39 GELPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGS---PELAAE-AS--RRLGRPVR 90
Query: 119 VADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 176
+ +YD +++ H+ ++LK I + +K L + ++
Sbjct: 91 TMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA------SYKSG 144
Query: 177 FEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWL 230
+ D ++ + + V GK + Q ++L
Sbjct: 145 EGEGRDKLA---RYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFL 195
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 6e-08
Identities = 16/150 (10%), Positives = 46/150 (30%), Gaps = 5/150 (3%)
Query: 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 103
+ + K + E LD G G G ++ + ++ + ++
Sbjct: 60 INSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQA 118
Query: 104 EEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKED 160
+ + + F E SYD I+ + H+ + L++ ++ +
Sbjct: 119 KTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN 178
Query: 161 TLLFVHHFCH-KTFAYHFEDTNDDDWITKY 189
++ + + D++ +
Sbjct: 179 GIIVIKDNMAQEGVILDDVDSSVCRDLDVV 208
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 7e-08
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 21/170 (12%)
Query: 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104
+ ++A+L R VLD+GCG G L +A + + G+ +T +
Sbjct: 38 QVTDQAILLAILGRQ----PERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAAR 91
Query: 105 EQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLL 163
+ + YD I + H + LL + + L+
Sbjct: 92 AAGAGEVHL-ASYAQLAEAKVPVGKDYDLICANFALLHQ-DIIELLSAMRTLLVPGGALV 149
Query: 164 F-VHHFCHKTFAYHFEDTNDDDW---------ITKYFFTGGTMPSANLLL 203
H + + ++ + + YF T + N L
Sbjct: 150 IQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASW--LNALD 197
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVL 110
+ + S L G L GCG G + +A + G+ S++ + E
Sbjct: 56 IVHLVDTSSLPLG-RALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSP 112
Query: 111 ELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168
+ + + D+ T+ +D I+ F + + K + + +K D L +
Sbjct: 113 KAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-07
Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT-----QKEFIEEQCRVLELQN 114
+ + V+D+GCG G+L + + S +ITG+ S + + ++ ++ +
Sbjct: 26 KSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKR 85
Query: 115 VEIIVADISTFEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 164
+ + + + + + YD IE+ EH+ Q K + ++ + T++
Sbjct: 86 ISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-07
Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
+L + G G + ++A ++T + S ++ + + + + ++++
Sbjct: 30 QGKILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLA 86
Query: 124 TFEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
F++ +++ I SI Q L K+ + +K + + F + Y+ D
Sbjct: 87 DFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKD 146
Query: 183 DDW 185
D
Sbjct: 147 LDL 149
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-V 115
R + G T +D+G G G+LS+ +A++ + I + SK E + L + +
Sbjct: 38 NRFGITAG-TCIDIGSGPGALSIALAKQS-DFSIRALDFSKHMNEIALKNIADANLNDRI 95
Query: 116 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
+I+ D+ E + D I S ++ ++I
Sbjct: 96 QIVQGDVHNIPIE-DNYADLIVSRGSVFFWEDVATAFREI 134
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV 115
+ L++G TVLDVG G G Y+++ K+ I + + E+ L L+NV
Sbjct: 31 KEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNV 90
Query: 116 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMK 158
E++ ++ + + + D I+ F + L+++ + K
Sbjct: 91 EVLKSEENKIPLP-DNTVDFIFMAFTFHELSEPLKFLEELKRVAK 134
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-07
Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
RSR + ++LDV CG G+ + ++ G+ S ++ + R L + +
Sbjct: 35 RSRTPEASSLLDVACGTGTHLEHFTKE--FGDTAGLELS---EDML-THARK-RLPDATL 87
Query: 118 IVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKE------DTLLFVHH 167
D+ F + + + S+ + + + ++ ++ + F
Sbjct: 88 HQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPET 147
Query: 168 FCHKTFAYHFEDTNDDD--WITKYFFTG 193
F + + ++ G
Sbjct: 148 FADGWVSADVVRRDGRTVARVSHSVREG 175
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 7e-07
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCR------- 108
E +++ G +L++GCG G LS +A + S+ +TGI + +
Sbjct: 37 EAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA 96
Query: 109 -----VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLK 151
L + + D+ + +DR+ + + L
Sbjct: 97 GPLGDRLTVHFNTNLSDDLGPIA-DQHFDRVVLAHSLWYFASANALAL 143
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 38/189 (20%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN----- 114
+ + D+G G G+ + +A + ++T + +E E R LEL +
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLY---ERSQEMAEFARRSLELPDNAAFS 89
Query: 115 --VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172
+E++ AD++ + E F H+ N + K
Sbjct: 90 ARIEVLEADVTLRAKARVEAGLPD-EHFHHV--IMN-----PPYNDAGDRRTPDA--LKA 139
Query: 173 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
A+ + +DWI A+ ++ +S++ Q+ E +
Sbjct: 140 EAHAMTEGLFEDWIRT----------ASAIMVSGGQLSLI--------SRPQSVAEIIAA 181
Query: 233 MDNNLASIK 241
+ ++
Sbjct: 182 CGSRFGGLE 190
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 1e-06
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 16/127 (12%)
Query: 67 VLDVGCGWGSLSLYI----AQKYSNCKITGIC---NSKTQKEFIEEQCRVLELQNVEIIV 119
+L +G G G + L I +Y I +++ ++ E + L+NV+
Sbjct: 56 ILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAW 115
Query: 120 ADISTFEMEA---------SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170
++ E ++ +D I+ I+M ++K+ LK + + + +
Sbjct: 116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175
Query: 171 KTFAYHF 177
+
Sbjct: 176 SSGWDKL 182
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ L V+DVGCG G +++ IA++ + I E ++ ++N +
Sbjct: 29 GKLNLNKDDVVVDVGCGSGGMTVEIAKR--CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQ 86
Query: 117 IIVAD 121
II
Sbjct: 87 IIKGR 91
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 3e-06
Identities = 14/82 (17%), Positives = 28/82 (34%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
G VLD+GC G L+L IA K+ ++ G+ + R + + + +
Sbjct: 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLE 106
Query: 124 TFEMEASYDRIYSIEMFEHMKN 145
+ ++
Sbjct: 107 GDPGAEGEEGTTTVRKRSCFPA 128
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
+ T+ D+G G GS+++ + S+ ++E I L + +
Sbjct: 20 ALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIA 79
Query: 118 IVADI 122
+
Sbjct: 80 VQQGA 84
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-CN----SKTQKEFIEEQCRVLE 111
+ L++ +LD+GCG G +SL +A K +TGI N +
Sbjct: 24 IHNYLQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 112 LQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMK 158
E V + S+ F ++S+D + + + + I + +
Sbjct: 82 GGKAEFKVENASSLSFH-DSSFDFAVMQAFLTSVPDPKERSRIIKEVFR 129
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 6/150 (4%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
AE +E + + VLD+ CG G +L +A++ ++ G+ +
Sbjct: 24 KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARR 81
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHM--KNYQNLLKKISKWMKEDTL 162
+ + L +E + D+ + +D + + ++ + L K+++ +K +
Sbjct: 82 KAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGV 140
Query: 163 LFVHHFCHKTFAYHFEDTNDDDWITKYFFT 192
C ++ +
Sbjct: 141 FITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 3e-06
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSK------TQKEFIEEQCRVLEL 112
R T++D GCG GSL + ++ I G+ S + ++ +
Sbjct: 718 RESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV 777
Query: 113 QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLF 164
++ + I F+ D +E+ EHM+ Q +K+ L+
Sbjct: 778 KSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 13/144 (9%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
E A L R ++LDV CG G ++A + G+ S + +
Sbjct: 34 HREAADLAALVRR-HSPKAASLLDVACGTGMHLRHLADS--FGTVEGLELS---ADML-A 86
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKED- 160
R + + D+ F + + + SI L++ + + D
Sbjct: 87 IARR-RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG 145
Query: 161 TLLFVHHFCHKTFAYHFEDTNDDD 184
++ + + F + +
Sbjct: 146 VVVVEPWWFPENFTPGYVAAGTVE 169
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 5e-06
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-LQ 113
R L G +L+VG G G++S YI +T + + + + +
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 162
Query: 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173
NV +DI+ F + YD + + + N ++KI+ MK ++ +
Sbjct: 163 NVRTSRSDIADFISDQMYDA-----VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQS 217
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 13/147 (8%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105
+ C + L LD+ CG G+L+ + K + S+ E
Sbjct: 21 KKWSDFIIEKCVENNLVFD-DYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAEN 77
Query: 106 QCRVLELQNVEIIVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKED- 160
+ R L + DIS + +D I S + + K +S +KE
Sbjct: 78 KFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG 136
Query: 161 TLLF----VHHFCHKTFAYHFEDTNDD 183
+F + F +D+
Sbjct: 137 VFIFDINSYYKLSQVLGNNDFNYDDDE 163
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-06
Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 25/149 (16%)
Query: 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104
ED ++ ++E + +LDVG G G + ++A +I G+ + +
Sbjct: 27 EDPDRVLIEPWATGV----DGVILDVGSGTGRWTGHLASL--GHQIEGLEPA---TRLV- 76
Query: 105 EQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDT 161
E R +V I+ + + + HM + + L + +++
Sbjct: 77 ELARQT-HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGG 135
Query: 162 LLFV-----------HHFCHKTFAYHFED 179
L + +H + + +
Sbjct: 136 GLLMSFFSGPSLEPMYHPVATAYRWPLPE 164
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 7e-06
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 17/135 (12%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
Y ++ L + + L VL+ GCG G + + +
Sbjct: 21 YRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDF 78
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADIST---FEMEASYDRIYSIEMFEHMKNYQNLLKK 152
S + + ++ + + A + I S + +++ +
Sbjct: 79 SPELLKLARANAP-----HADVYEWNGKGELPAGLGAPFGLIVS------RRGPTSVILR 127
Query: 153 ISKWMKED-TLLFVH 166
+ + D L+V
Sbjct: 128 LPELAAPDAHFLYVG 142
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-06
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 16/123 (13%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
L +++G G G ++ + G+ E E + + V
Sbjct: 41 AVKCLLPEGRGVEIGVGTGRFAVPLK------IKIGV-------EPSERMAEIARKRGVF 87
Query: 117 IIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174
++ + + S+D + + + + LK+ + +K+ L V ++F
Sbjct: 88 VLKGTAENLPLK-DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL 146
Query: 175 YHF 177
Sbjct: 147 GRE 149
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-06
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEII 118
+DVGCG G ++L +A ++ I + E + L NV ++
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELAG--RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM 87
Query: 119 VADI-STFEMEASYDRI 134
D D
Sbjct: 88 EGDAPEALCKIPDIDIA 104
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 26/169 (15%)
Query: 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIE 104
+ +A+LE L +L +GCG +LS + + N +T + S ++
Sbjct: 30 SSFRALLEPE-----LRPEDRILVLGCGNSALSYELFLGGFPN--VTSVDYSSVVVAAMQ 82
Query: 105 EQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM---------------KNYQN 148
+ + D+ + AS+D + + +
Sbjct: 83 ACYA--HVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQ 140
Query: 149 LLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMP 197
+L ++S+ + F W ++ G
Sbjct: 141 VLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYGSGFH 189
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-05
Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 50 AMLELYCE-RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 108
+ + Y ++ ++LD GCG+ L+LY + + + F+
Sbjct: 35 TLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIG 94
Query: 109 VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN 145
L+ ++ + + + +YD ++ ++M +K
Sbjct: 95 KLKTT-IKYRFLNKESDVYKGTYDVVFLLKMLPVLKQ 130
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 11/134 (8%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 95
Y E + G +LD GCG G + Y++++ + G
Sbjct: 19 YAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDL 76
Query: 96 SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQNL---LK 151
I + + + +V D+S ++ E +D I S L
Sbjct: 77 D---PILI-DYAKQ-DFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALA 131
Query: 152 KISKWMKEDTLLFV 165
I + + D +
Sbjct: 132 NIHRALGADGRAVI 145
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 20/80 (25%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNV-------E 116
VLDVGCG G LS+ A+ ++T + +E + E
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLT----------LCDVSAPAVEASRATLAANGVEGE 248
Query: 117 IIVADISTFEMEASYDRIYS 136
+ +++ + E++ +D I S
Sbjct: 249 VFASNVFS-EVKGRFDMIIS 267
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-05
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 23/84 (27%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------- 112
++D+GCG G + L + K K+ F++E +
Sbjct: 225 EIVDLGCGNGVIGLTLLDKNPQAKVV----------FVDESPMAVASSRLNVETNMPEAL 274
Query: 113 QNVEIIVADISTFEMEASYDRIYS 136
E ++ + + ++ +
Sbjct: 275 DRCEFMINNALSGVEPFRFNAVLC 298
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 106
L L + + H VLD+G G G +L + + G+ +K E
Sbjct: 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSF 62
Query: 107 CRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLK 151
+ ++NV + F + S+D I H + + ++
Sbjct: 63 AQEKGVENVRFQQGTAESLPFP-DDSFDIITCRYAAHHFSDVRKAVR 108
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-05
Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 37/214 (17%)
Query: 40 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ 99
D K L + +D+G G G +A N GI K
Sbjct: 5 KGTKTVDLSKDELT----EIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKEN 60
Query: 100 KEFI----EEQCRVLELQNVEIIVADIS--TFEMEASYDRIY-----SIEMFEHMKNYQN 148
I ++ L NV ++A FE++ D I + +K ++
Sbjct: 61 LFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRD 120
Query: 149 LLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDD 208
+L ++ K++ T D + +P + + +
Sbjct: 121 ILSNVADLAKKEAHFEF-------------VTTYSDSYEEAEIKKRGLPLLSKAYFLSEQ 167
Query: 209 VS---------VVDHWLVNGKHYAQTSEEWLKRM 233
+ D ++ ++ Q + W KR+
Sbjct: 168 YKAELSNSGFRIDDVKELDNEYVKQFNSLWAKRL 201
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 17/94 (18%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE---EQCRVLELQ 113
L G + D+G G G S+ +A + + + E +Q
Sbjct: 28 NLLNLPKGSVIADIGAGTGGYSVALANQ--GLFVYAV-------EPSIVMRQQAV--VHP 76
Query: 114 NVEIIVADIST--FEMEASYDRIYSIEMFEHMKN 145
VE + S D + SI H +
Sbjct: 77 QVEWFTGYAENLALP-DKSVDGVISILAIHHFSH 109
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 39/270 (14%), Positives = 71/270 (26%), Gaps = 49/270 (18%)
Query: 36 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-- 93
Y D + + +L L R H VLDV CG G S+ + ++ +T +
Sbjct: 34 YIGDTRSRTAEYKAWLLGLL----RQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDA 87
Query: 94 -------CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHMKN 145
+ E ++ + D +D + + F H+ +
Sbjct: 88 SDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD-KDVPAGDGFDAVICLGNSFAHLPD 146
Query: 146 YQN-------LLKKISKWMKEDTLLFVHHF----------CHKTFAYHFEDTNDDDWITK 188
+ LK I+ ++ LL + H +++ D T
Sbjct: 147 SKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTS 206
Query: 189 YFFTGGTMPSANLLLYFQDDVSVVD----HWLVNGKHYAQTSEE---WLKRMDNNLASIK 241
L Q + D +Y ++
Sbjct: 207 VLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQH- 265
Query: 242 PIMESTYG--KDQAVKWTVYWRTFFIAVAE 269
S G K Y +FI V +
Sbjct: 266 ----SVLGDFKPYRPG-QAYVPCYFIHVLK 290
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 9/109 (8%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEII 118
G + D+G G GS+S+ + + I + E I++ L + +
Sbjct: 52 APRRGELLWDIGGGSGSVSVEWCL--AGGRAITIEPRADRIENIQKNIDTYGLSPRMRAV 109
Query: 119 VADIST-FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166
+ + F Q L ++ +W+ T + +
Sbjct: 110 QGTAPAALADLPLPEAV-----FIGGGGSQALYDRLWEWLAPGTRIVAN 153
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 102
T +A +L L +E G V D+G G G LS A ++ + K +
Sbjct: 30 TPGNAASELLWLAYSLGDIE-GKVVADLGAGTGVLSY-GALLLGAKEVICVEVDKEAVDV 87
Query: 103 IEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL 162
+ E + + ++ + D+S F + D + + + + K + +
Sbjct: 88 LIENLGEFKGK-FKVFIGDVSEF--NSRVDIVI-MNPPFGSQRKHADRPFLLKAFEISDV 143
Query: 163 LFVHHFCHKTFAYHFE 178
++ H E
Sbjct: 144 VYSIHLAKPEVRRFIE 159
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADIS 123
+LD+GCG+G + + +A + T ++ + +E ++ L N + ++ +D+
Sbjct: 55 DILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY 112
Query: 124 TFEMEASYDRIYS 136
+ Y++I +
Sbjct: 113 ENVKDRKYNKIIT 125
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Length = 207 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQK-EFIEEQCRVLELQNVEI 117
+ G +DVG G G + ++ T + +S ++ F+ + L+L+N+E
Sbjct: 61 APYLQGERFIDVGTGPGLPGIPLSIVRPEAHFT-LLDSLGKRVRFLRQVQHELKLENIEP 119
Query: 118 IVADISTFEMEASYDRI 134
+ + + F E +D +
Sbjct: 120 VQSRVEEFPSEPPFDGV 136
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 17/89 (19%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI---------CNSKTQKEFIEEQCR 108
VL++ G G L+ ++T + + + + + R
Sbjct: 77 TRTGPVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDR 134
Query: 109 VLELQNVEIIVADISTFEMEASYDRIYSI 137
++ D+S F ++ + +
Sbjct: 135 ------CTLVQGDMSAFALDKRFGTVVIS 157
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE----L 112
+ +++G TV+D CG G+ + ++A N ++ G Q + I + L +
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGF---DIQDKAIANTTKKLTDLNLI 73
Query: 113 QNVEIIVADISTFE 126
V +I +
Sbjct: 74 DRVTLIKDGHQNMD 87
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 7e-04
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111
L + + L+ VLDV G G ++ A K+ ++ +
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG 83
Query: 112 LQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLK 151
Q VE + D F + + + H N + +
Sbjct: 84 HQQVEYVQGDAEQMPFT-DERFHIVTCRIAAHHFPNPASFVS 124
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 100.0 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 100.0 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 100.0 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.98 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.95 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.91 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.89 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.87 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.86 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.84 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.83 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.83 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.82 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.81 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.81 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.8 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.8 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.8 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.8 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.79 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.79 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.79 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.78 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.78 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.78 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.78 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.78 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.78 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.78 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.77 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.77 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.76 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.76 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.76 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.76 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.76 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.76 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.76 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.76 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.75 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.75 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.75 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.75 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.75 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.75 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.75 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.75 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.75 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.74 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.74 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.74 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.74 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.74 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.74 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.74 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.74 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.73 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.73 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.73 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.73 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.73 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.73 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.73 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.73 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.73 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.72 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.72 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.72 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.71 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.71 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.71 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.71 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.71 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.71 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.71 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.71 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.71 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.71 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.7 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.7 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.7 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.7 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.69 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.69 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.69 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.69 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.69 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.69 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.69 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.69 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.69 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.69 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.69 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.69 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.69 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.69 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.68 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.68 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.68 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.68 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.68 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.67 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.67 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.67 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.67 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.67 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.67 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.67 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.67 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.67 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.67 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.67 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.67 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.67 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.67 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.67 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.67 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.66 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.66 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.66 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.66 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.66 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.66 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.66 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.66 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.66 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.65 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.65 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.65 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.65 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.65 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.65 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.65 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.65 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.65 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.65 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.64 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.64 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.64 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.63 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.63 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.63 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.63 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.63 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.63 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.63 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.63 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.63 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.63 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.63 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.62 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.62 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.62 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.62 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.62 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.62 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.61 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.61 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.61 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.61 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.61 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.6 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.6 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.59 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.59 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.59 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.59 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.59 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.59 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.58 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.58 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.58 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.58 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.58 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.58 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.58 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.57 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.57 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.57 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.56 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.56 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.56 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.55 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.55 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.55 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.55 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.55 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.55 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.54 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.54 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.54 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.54 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.53 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.53 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.52 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.52 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.51 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.51 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.5 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.5 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.49 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.49 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.49 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.49 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.49 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.49 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.49 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.48 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.48 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.48 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.48 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.48 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.48 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.47 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.47 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.47 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.47 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.47 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.46 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.46 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.46 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.45 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.45 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.45 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.44 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.44 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.44 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.44 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.44 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.44 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.43 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.43 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.43 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.42 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.42 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.41 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.41 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.4 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.39 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.39 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.38 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.38 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.36 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.36 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.35 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.33 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.33 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.32 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.31 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.3 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.28 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.27 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.26 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.23 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.22 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.22 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.2 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.17 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.15 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.14 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.11 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.09 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.09 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.05 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.05 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.04 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.02 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.01 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 99.0 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.96 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.91 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.86 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.81 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.81 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.75 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.7 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.63 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.63 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.61 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.57 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.57 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.52 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.41 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.36 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.27 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.23 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.23 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.21 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.07 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.98 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.83 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.83 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.82 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.79 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.54 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.34 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.05 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.97 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.88 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.83 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.82 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.82 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.79 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.79 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.77 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.76 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.75 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.7 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.61 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.52 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.51 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.48 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.44 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.42 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.25 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.25 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.22 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.21 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.2 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.17 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.12 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.11 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.09 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.07 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.06 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.97 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.94 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.93 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.92 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.88 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.87 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.87 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.77 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.77 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.74 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.73 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.73 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.68 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.6 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.53 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.48 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.47 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.46 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.45 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.31 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.21 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.2 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.15 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.14 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.0 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.92 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.85 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.8 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.77 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.77 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.74 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.67 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.63 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.49 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.44 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.42 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.41 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.4 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.35 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.2 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.15 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.13 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.05 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.95 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.92 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.81 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.79 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.7 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.53 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.45 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.38 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.37 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 93.3 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 93.26 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.25 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.06 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.05 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.03 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 92.99 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.98 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.97 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.88 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 92.84 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.79 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 92.76 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.42 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.05 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.95 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 91.9 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 91.84 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 91.79 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 91.79 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 91.71 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 91.57 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.5 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 91.41 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.35 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 91.33 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 91.3 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.3 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 91.27 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.15 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 90.94 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 90.86 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 90.82 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 90.76 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 90.72 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 90.47 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.46 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 90.42 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.3 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 90.18 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 90.01 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 89.91 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 89.9 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 89.83 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 89.42 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 89.31 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.26 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 89.08 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 88.99 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 88.9 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 88.75 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 88.41 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 87.95 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.74 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 87.41 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 87.4 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 87.4 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.35 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 87.29 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.29 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 87.26 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 87.21 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 87.18 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 87.18 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 87.18 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 87.17 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 86.97 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 86.89 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 86.67 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 86.52 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 86.52 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 86.35 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 86.16 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 86.1 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 86.08 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 85.91 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 85.9 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.81 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 85.75 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 85.56 | |
| 3nbm_A | 108 | PTS system, lactose-specific IIBC components; PTS_ | 85.52 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 85.51 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 85.44 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 85.21 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 85.17 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 85.06 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 84.94 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 84.69 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 84.66 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 84.43 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 84.19 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 84.15 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 84.04 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 83.99 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 83.98 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 83.9 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 83.74 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 83.57 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 83.38 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 83.19 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 83.08 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 82.97 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 82.94 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 82.87 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 82.76 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 82.74 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 82.49 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 82.33 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 82.21 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 82.11 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 81.97 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 81.96 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 81.96 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 81.9 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 81.89 |
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=275.21 Aligned_cols=268 Identities=25% Similarity=0.410 Sum_probs=229.6
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
.....+++|||..+++|..++++.+.|++++|.....++.+++.++++.+++.+.+.++.+|||||||+|.++..+++.+
T Consensus 15 ~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 94 (302)
T 3hem_A 15 PPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY 94 (302)
T ss_dssp CCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccccc---------HHHHHHHHHh
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMKN---------YQNLLKKISK 155 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~---------~~~~l~~~~~ 155 (291)
+.+|+|+|+|+.+++.+++++...+++ +++++.+|+.++ .++||+|++..+++|+++ ...+++++.+
T Consensus 95 -~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~ 171 (302)
T 3hem_A 95 -DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYN 171 (302)
T ss_dssp -CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHH
T ss_pred -CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHH
Confidence 489999999999999999999998885 799999999887 589999999999999954 4799999999
Q ss_pred ccccCeeEEEEeeccCCcccccccC--------CccchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHHH
Q 022810 156 WMKEDTLLFVHHFCHKTFAYHFEDT--------NDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQT 225 (291)
Q Consensus 156 ~L~pgG~l~i~~~~~~~~~~~~~~~--------~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~t 225 (291)
+|||||++++.++............ ....|+.++++|++.+++...+.... .++.+++. ...+.+|.+|
T Consensus 172 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~-~~~~~~y~~t 250 (302)
T 3hem_A 172 LTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY-HRIGANYVPT 250 (302)
T ss_dssp SSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEE-EECGGGHHHH
T ss_pred hcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEE-EeCchhHHHH
Confidence 9999999999988765432111000 01278999999999888876655543 36766654 4557889999
Q ss_pred HHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022810 226 SEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 226 ~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
++.|.+++.++..++... ++ ..+++.|+.|+.+|+.+|+.|. +++.|++++|
T Consensus 251 l~~w~~~~~~~~~~~~~~----~~----~~~~~~w~~yl~~~~~~f~~~~---~~~~q~~~~~ 302 (302)
T 3hem_A 251 LNAWADALQAHKDEAIAL----KG----QETCDIYMHYLRGCSDLFRDKY---TDVCQFTLVK 302 (302)
T ss_dssp HHHHHHHHHHTHHHHHHH----HC----HHHHHHHHHHHHHHHHHHHTTS---SEEEEEEEEC
T ss_pred HHHHHHHHHHhHHHHHHH----hC----HHHHHHHHHHHHHHHHHHhCCC---CeEEEEEEEC
Confidence 999999999998887655 45 3688999999999999999988 5699999987
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=255.08 Aligned_cols=268 Identities=25% Similarity=0.435 Sum_probs=225.8
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
.....+++|||..++||+.++++.+.|++++|.....++.+++.++++.+++.+.+.++.+|||||||+|.++..+++..
T Consensus 7 ~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 86 (287)
T 1kpg_A 7 PHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY 86 (287)
T ss_dssp CCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred ccHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc
Confidence 45678999999999999999999999999999988899999999999999999988899999999999999999999665
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCee
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~ 162 (291)
+.+|+|+|+|+.+++.+++++...++ ++++++.+|+.+++ ++||+|++..+++|+ ++...+++++.++|||||.
T Consensus 87 -~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 163 (287)
T 1kpg_A 87 -DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV 163 (287)
T ss_dssp -CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred -CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCE
Confidence 67999999999999999999988776 47999999998765 789999999999999 6889999999999999999
Q ss_pred EEEEeeccCCccccc--------ccCCccchhhhhccCCCCCCcHHHHHHh--hcCcEEEEeeecCCCcHHHHHHHHHHH
Q 022810 163 LFVHHFCHKTFAYHF--------EDTNDDDWITKYFFTGGTMPSANLLLYF--QDDVSVVDHWLVNGKHYAQTSEEWLKR 232 (291)
Q Consensus 163 l~i~~~~~~~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~t~~~w~~~ 232 (291)
+++.++......... .......|+.++++|++.+++...+... ..++.+++. ...+.+|.+|+..|..+
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~-~~~~~~y~~~~~~w~~~ 242 (287)
T 1kpg_A 164 MLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRV-QSLQPHYAKTLDLWSAA 242 (287)
T ss_dssp EEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEE-EECHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEE-EeCcHhHHHHHHHHHHH
Confidence 999888765422100 0012345677888999988877666554 246766654 44457899999999999
Q ss_pred HHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022810 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
+.++..++... ++ ..+++.|+.|+.+|+++|+.|. +++.||+++|
T Consensus 243 ~~~~~~~~~~~----~~----~~~~~~~~~~l~~~~~~f~~g~---~~~~~~~~~k 287 (287)
T 1kpg_A 243 LQANKGQAIAL----QS----EEVYERYMKYLTGCAEMFRIGY---IDVNQFTCQK 287 (287)
T ss_dssp HHHTHHHHHHH----SC----HHHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEC
T ss_pred HHHHHHHHHHh----cC----hHHHHHHHHHHHHHHHHHhCCC---CeEEEEEEEC
Confidence 99887776543 44 3678999999999999999977 7899999987
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=247.63 Aligned_cols=269 Identities=23% Similarity=0.379 Sum_probs=221.6
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC
Q 022810 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p 86 (291)
....+++|||..+++|+.++++.+.|++++|.....++.+++..+++.+++.+.+.++.+|||||||+|.++..+++.+
T Consensus 34 ~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~- 112 (318)
T 2fk8_A 34 RFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF- 112 (318)
T ss_dssp ----CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-
T ss_pred hHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-
Confidence 3457789999999999999999999999999988899999999999999999998899999999999999999999886
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCeeE
Q 022810 87 NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l 163 (291)
+.+|+|+|+|+.+++.++++....++ ++++++.+|+.+++ ++||+|++..+++|+ ++...+++++.++|||||++
T Consensus 113 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 190 (318)
T 2fk8_A 113 DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM 190 (318)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEE
Confidence 67999999999999999999988877 36999999998874 789999999999999 78899999999999999999
Q ss_pred EEEeeccCCcccccc--------cCCccchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHHHHHHHHHHH
Q 022810 164 FVHHFCHKTFAYHFE--------DTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLKRM 233 (291)
Q Consensus 164 ~i~~~~~~~~~~~~~--------~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~w~~~l 233 (291)
++.++.......... ......|+.++++|++.+++...+.... .++.+++ +...+.+|.+++..|..++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~-~~~~~~~y~~~~~~w~~~~ 269 (318)
T 2fk8_A 191 TVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPE-PLSLRPHYIKTLRIWGDTL 269 (318)
T ss_dssp EEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCC-CEECHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEE-EEecchhHHHHHHHHHHHH
Confidence 999887654321000 0012367777888888888766655432 3565544 3334568999999999999
Q ss_pred HhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 022810 234 DNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 290 (291)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 290 (291)
.++..++... ++ ..+++.|+.|+..|.++|+.|.. ++.|++++||.
T Consensus 270 ~~~~~~~~~~----~~----~~~~~~~~~~l~~~~~~f~~g~~---~~~~~~~~k~~ 315 (318)
T 2fk8_A 270 QSNKDKAIEV----TS----EEVYNRYMKYLRGCEHYFTDEML---DCSLVTYLKPG 315 (318)
T ss_dssp HHTHHHHHHH----SC----HHHHHHHHHHHHHHHHHHHTTSC---EEEEEEEECTT
T ss_pred HHHHHHHHHh----cC----hHHHHHHHHHHHHHHHHHHCCCC---eEEEEEEEeCC
Confidence 9887766543 33 36789999999999999999884 69999999983
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=222.88 Aligned_cols=262 Identities=18% Similarity=0.231 Sum_probs=185.6
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHH
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDAS--KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQ 83 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 83 (291)
++...+++|||..+++|+.++++.+++ ++|.... .++.+++..+.+.+++.+.+.++.+|||||||+|.++..+++
T Consensus 4 p~~~~~~~~Yd~~~~~y~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~ 81 (273)
T 3bus_A 4 PTPEEVRQMYDDFTDPFARIWGENLHF--GYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLAT 81 (273)
T ss_dssp -------------------CCGGGCCC--CCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHH
T ss_pred CcHHHHHHHHcchHHHHHHHcCCCceE--EecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHH
Confidence 677889999999999999999987766 8998765 689999999999999999999999999999999999999998
Q ss_pred HCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCe
Q 022810 84 KYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 84 ~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 161 (291)
.. +.+|+|+|+|+.+++.+++++...++ +++.++.+|+.+++.+ ++||+|++..+++|+++...+++++.++|||||
T Consensus 82 ~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 160 (273)
T 3bus_A 82 AR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGG 160 (273)
T ss_dssp HS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEE
T ss_pred hc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCe
Confidence 76 78999999999999999999988887 4799999999988766 789999999999999999999999999999999
Q ss_pred eEEEEeeccCCcccccccCCccchhhh--hccCCCCCCcHHHHHH-h-hcCcEEEEeeecCCCcHHHHHHHHHHHHHhcH
Q 022810 162 LLFVHHFCHKTFAYHFEDTNDDDWITK--YFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNL 237 (291)
Q Consensus 162 ~l~i~~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~ 237 (291)
++++.++......... ...+... ..++....++...+.. + ..++.+++. ...+.+|.+++..|.+++.+..
T Consensus 161 ~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 235 (273)
T 3bus_A 161 TVAIADFVLLAPVEGA----KKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTST-VDISAQARPSLVKTAEAFENAR 235 (273)
T ss_dssp EEEEEEEEESSCCCHH----HHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEE-EECHHHHTTHHHHHHHHHHHTH
T ss_pred EEEEEEeeccCCCChh----HHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEE-EECcHhHHHHHHHHHHHHHHhH
Confidence 9999887654322111 0111111 1234445555444443 3 346766553 3345567788999999998765
Q ss_pred HhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022810 238 ASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
..+. ..+|++..+.+...|+.+ +..+. ++.+++++|||
T Consensus 236 ~~~~----~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~kp 273 (273)
T 3bus_A 236 SQVE----PFMGAEGLDRMIATFRGL-------AEVPE---AGYVLIGARKP 273 (273)
T ss_dssp HHHH----HHHCHHHHHHHHHHHHHH-------HTCTT---EEEEEEEEECC
T ss_pred HHHH----hhcCHHHHHHHHHHHHHH-------hhCCC---eeEEEEEEECC
Confidence 4443 345654444555555432 44433 89999999998
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=196.90 Aligned_cols=260 Identities=17% Similarity=0.201 Sum_probs=192.4
Q ss_pred hhHHHhhcCCC--hHHHHHhh-CCCCCccccccCCC--CCCHHHHHHHHHHHHHHHc----CCCCCCEEEEEcCCcchHH
Q 022810 8 DKAKEQHYELP--TSFFKLVL-GKYFKYSCCYFSDA--SKTLEDAEKAMLELYCERS----RLEDGHTVLDVGCGWGSLS 78 (291)
Q Consensus 8 ~~~~~~~yd~~--~~~y~~~~-~~~~~y~~~~~~~~--~~~l~~~~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~ 78 (291)
...+.+|||.. .+||+.++ ++.+++ ++|... ...+.+++.+.++.+++.+ .+.++.+|||||||+|..+
T Consensus 20 ~~~~~~~Yd~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~ 97 (297)
T 2o57_A 20 KDNAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAA 97 (297)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHH
T ss_pred HHHHHHHcCCccchhHHHHHhCCCceEE--EecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHH
Confidence 45688999987 59998877 466665 899877 7889999999999999988 8888999999999999999
Q ss_pred HHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhc
Q 022810 79 LYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKW 156 (291)
Q Consensus 79 ~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~ 156 (291)
..+++.+ +.+|+|+|+|+.+++.++++....++ ++++++++|+.+++.+ ++||+|++..+++|+++...+++++.++
T Consensus 98 ~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~ 176 (297)
T 2o57_A 98 RFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARV 176 (297)
T ss_dssp HHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHH
Confidence 9999876 67999999999999999999988887 4799999999998766 7899999999999999999999999999
Q ss_pred cccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHH-HHh-hcCcEEEEeeecC---CCcHHHHHHHHHH
Q 022810 157 MKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLL-LYF-QDDVSVVDHWLVN---GKHYAQTSEEWLK 231 (291)
Q Consensus 157 L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~---~~~~~~t~~~w~~ 231 (291)
|||||++++.++......... ....+...+..+. +.+...+ ..+ ..++.+++..... ..+|.+++..|.+
T Consensus 177 LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (297)
T 2o57_A 177 LKPRGVMAITDPMKEDGIDKS---SIQPILDRIKLHD--MGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELIK 251 (297)
T ss_dssp EEEEEEEEEEEEEECTTCCGG---GGHHHHHHHTCSS--CCCHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEeccCCCCchH---HHHHHHHHhcCCC--CCCHHHHHHHHHHCCCeEEEEEECchhhHHHHHHHHHHHHH
Confidence 999999999887654322111 1122333322222 2233322 223 3567666543321 1345555555544
Q ss_pred HHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 022810 232 RMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 290 (291)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 290 (291)
.... + ....+ ...+..|...+..+.++++.|. ++.+++++|||.
T Consensus 252 ~~~~----~----~~~~~----~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~a~Kp~ 295 (297)
T 2o57_A 252 RSSE----I----ASFCS----PEFQANMKRGLEHWIEGGRAGK---LTWGGMLFRKSD 295 (297)
T ss_dssp THHH----H----TTTSC----HHHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEESS
T ss_pred hHHH----H----hccCC----HHHHHHHHHHHHHHHHhccCCe---EEEEEEEEECCC
Confidence 3221 1 12233 2456667777777777777654 789999999994
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=176.44 Aligned_cols=220 Identities=19% Similarity=0.231 Sum_probs=162.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
......+++.+.+.++.+|||||||+|..+..+++.+ +.+|+|+|+|+.+++.++++.... ++++++++|+.+.+.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~ 117 (266)
T 3ujc_A 41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFP 117 (266)
T ss_dssp HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCC
Confidence 3456677788888899999999999999999999987 789999999999999998876544 4899999999988765
Q ss_pred -CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCC-CCCcHHHHH-
Q 022810 129 -ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGG-TMPSANLLL- 203 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~- 203 (291)
++||+|++..+++|+ ++...+++++.++|||||.+++.++....... .......+..+.+ ..++...+.
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQRKYTLITVEEYAD 191 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhcCCCCCCCHHHHHH
Confidence 899999999999999 89999999999999999999998876554111 1111222222222 233433333
Q ss_pred Hh-hcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Q 022810 204 YF-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVT 282 (291)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 282 (291)
.+ ..++..++.. ....+|..++..|...+.+...++... ++++....+...|+.|+.++.. |. .+-+
T Consensus 192 ~l~~~Gf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----g~---~~w~ 259 (266)
T 3ujc_A 192 ILTACNFKNVVSK-DLSDYWNQLLEVEHKYLHENKEEFLKL----FSEKKFISLDDGWSRKIKDSKR----KM---QRWG 259 (266)
T ss_dssp HHHHTTCEEEEEE-ECHHHHHHHHHHHHHHHHHTHHHHHHH----SCHHHHHHHHHHHHHHHHHHHT----TS---EEEE
T ss_pred HHHHcCCeEEEEE-eCCHHHHHHHHHHHHHHHhCHHHHHHh----cCHHHHHHHHHHHHHHHHHHHc----Cc---ccce
Confidence 33 3467665543 334678889999999998877766543 5655556677779888877763 22 4455
Q ss_pred EEEEeec
Q 022810 283 HFLFRKK 289 (291)
Q Consensus 283 ~~~~~~~ 289 (291)
.+++|||
T Consensus 260 ~~~~~Kp 266 (266)
T 3ujc_A 260 YFKATKN 266 (266)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 5667998
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-22 Score=173.94 Aligned_cols=211 Identities=16% Similarity=0.194 Sum_probs=157.9
Q ss_pred HhhcCCChHHHHHhhCCC-CCccccccCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCE
Q 022810 12 EQHYELPTSFFKLVLGKY-FKYSCCYFSDASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89 (291)
Q Consensus 12 ~~~yd~~~~~y~~~~~~~-~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~ 89 (291)
.+|||.+++++..+.++. +.|+...|.. ....+......+++.+. +.++.+|||+|||+|.++..+++.+ +.+
T Consensus 68 ~~~y~~~~~~~~~~~~~~~~~y~~~~f~~----~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~ 142 (312)
T 3vc1_A 68 HHHYGIGPVDRAALGDPEHSEYEKKVIAE----LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR 142 (312)
T ss_dssp CCSCCCSCCCHHHHCCTTSTTHHHHHHHH----HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE
T ss_pred hhhcCCchhHHHhhcCCCccccchHHHhh----hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE
Confidence 578999988888887777 8888877763 34444555567777777 7889999999999999999999886 789
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 90 ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|+|+++.+++.|++++...++. +++++++|+.+++.+ ++||+|++..+++++ +...+++++.++|||||++++.+
T Consensus 143 v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 143 VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999999998884 799999999988766 899999999999999 59999999999999999999988
Q ss_pred eccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-h-hcCcEEEEeeecCCCcHHHHHHHHHHHHHhc
Q 022810 168 FCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNN 236 (291)
Q Consensus 168 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~ 236 (291)
+......... .....++.+.+.+. .++...+.. + ..++.+++.... -..++..|...+.++
T Consensus 222 ~~~~~~~~~~--~~~~~~~~~~~~~~--~~s~~~~~~~l~~aGf~~~~~~~~----~~~~~~~w~~~~~~~ 284 (312)
T 3vc1_A 222 GCWNPRYGQP--SKWVSQINAHFECN--IHSRREYLRAMADNRLVPHTIVDL----TPDTLPYWELRATSS 284 (312)
T ss_dssp EEECTTTCSC--CHHHHHHHHHHTCC--CCBHHHHHHHHHTTTEEEEEEEEC----HHHHHHHHHHHTTST
T ss_pred ccccccccch--hHHHHHHHhhhcCC--CCCHHHHHHHHHHCCCEEEEEEeC----CHHHHHHHHHHHHHh
Confidence 7665432110 01122333333332 334333333 3 245665554322 146788888876643
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-20 Score=159.35 Aligned_cols=176 Identities=17% Similarity=0.221 Sum_probs=131.2
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022810 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~- 128 (291)
...++..+. +.++.+|||||||+|..+..+++. ++.+|+|+|+|+.+++.+++++...++ ++++++++|+.+++.+
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN 112 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC
Confidence 444555554 678899999999999999999987 577999999999999999999999888 4699999999988765
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-h-h
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-Q 206 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~-~ 206 (291)
++||+|++..+++++ +...+++++.++|||||++++.++.......... ....|... ++ .+++...+.. + .
T Consensus 113 ~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~--~~~~~~~~--~~--~~~~~~~~~~~l~~ 185 (267)
T 3kkz_A 113 EELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAE--INDFWMDA--YP--EIDTIPNQVAKIHK 185 (267)
T ss_dssp TCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH--HHHHHHHH--CT--TCEEHHHHHHHHHH
T ss_pred CCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH--HHHHHHHh--CC--CCCCHHHHHHHHHH
Confidence 899999999999999 8999999999999999999998876432211100 01223222 22 2344433333 2 3
Q ss_pred cCcEEEEeeecCC----CcHHHHHHHHHHHHHh
Q 022810 207 DDVSVVDHWLVNG----KHYAQTSEEWLKRMDN 235 (291)
Q Consensus 207 ~~~~~~~~~~~~~----~~~~~t~~~w~~~l~~ 235 (291)
.++..++...... .+|..++..|...+.+
T Consensus 186 aGf~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (267)
T 3kkz_A 186 AGYLPVATFILPENCWTDHYFTPKVAAQKIFLT 218 (267)
T ss_dssp TTEEEEEEEECCGGGTTTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCHhHHHHHHHHHHHHHHHHHHH
Confidence 5677665543221 4678888999888754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-20 Score=156.06 Aligned_cols=122 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~ 127 (291)
...+..+++.+.+.++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.+++++...++ ++++++++|+.+.+.
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 100 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 100 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence 3456677777888899999999999999999999887 78999999999999999999998887 479999999998766
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.++||+|++..+++++++...+++++.++|||||.+++.++...
T Consensus 101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (256)
T 1nkv_A 101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR 144 (256)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEET
T ss_pred CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 68899999999999999999999999999999999999877543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=152.29 Aligned_cols=118 Identities=20% Similarity=0.298 Sum_probs=103.8
Q ss_pred HHHHHHHHc-CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022810 51 MLELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~ 128 (291)
....+++.+ .+.++.+|||||||+|..+..+++..+ .+|+|+|+|+.+++.+++++...+++ +++++++|+.+++.+
T Consensus 33 ~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (257)
T 3f4k_A 33 ATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111 (257)
T ss_dssp HHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence 344455555 467788999999999999999999974 49999999999999999999998884 599999999888766
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++||+|++..+++++ +...+++++.++|+|||++++.++..
T Consensus 112 ~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~ 153 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASW 153 (257)
T ss_dssp TTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred CCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 899999999999999 78999999999999999999988753
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-21 Score=163.85 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=102.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-cC-
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-ME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~-~~- 128 (291)
+..++..+... +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ ++++++++|+.+.+ ..
T Consensus 58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 45556665544 679999999999999999987 78999999999999999999988887 58999999999876 33
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++||+|++..+++++++...+++++.++|||||++++..++..
T Consensus 135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 8999999999999999999999999999999999999887653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-20 Score=157.22 Aligned_cols=130 Identities=25% Similarity=0.373 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc
Q 022810 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d 121 (291)
..+......+...+.....+.++.+|||||||+|..+..+++..|+.+|+|+|+|+.+++.+++++...++++++++.+|
T Consensus 16 ~~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d 95 (276)
T 3mgg_A 16 LRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN 95 (276)
T ss_dssp -------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcc
Confidence 33443334444444455556789999999999999999999998889999999999999999999998888789999999
Q ss_pred ccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 122 ISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 122 ~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+.+++.+ ++||+|++..+++++++...+++++.++|||||++++..+...
T Consensus 96 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (276)
T 3mgg_A 96 IFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHG 146 (276)
T ss_dssp GGGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGG
T ss_pred cccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 9987765 8999999999999999999999999999999999999887653
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=154.04 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=96.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
++++.+|||||||+|..+..+++.+ ++++|+|+|+|+.|++.|++++...+. .+++++++|+.+++. ++||+|+++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~ 146 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 146 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceee
Confidence 5789999999999999999999875 578999999999999999999988776 479999999998765 579999999
Q ss_pred cccccccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022810 138 EMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 138 ~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.+++++++ ...++++++++|||||+|++.+...
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 99999854 4579999999999999999977654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=155.96 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=107.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...+..+++.+...++.+|||||||+|.++..+++.. .+|+|+|+|+.+++.+++++...+.+++.++++|+.+++.+
T Consensus 23 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 23 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 3445667777777889999999999999999999884 59999999999999999999888877899999999998766
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++||+|+++.+++|+++...+++++.++|||||++++..+..+
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 144 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCC
Confidence 8999999999999999999999999999999999999776543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-21 Score=161.94 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=129.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
...+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.. ..++.++++|+.+++.+ ++
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~ 108 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDA 108 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTC
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCC
Confidence 3445566666688999999999999999999874 2399999999999999988764 34799999999988765 89
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcE
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVS 210 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
||+|++..+++++++...+++++.++|||||.+++..+++...... ...|... ..+.........++.....
T Consensus 109 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~ 180 (253)
T 3g5l_A 109 YNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADG-----RQDWYTD---ETGNKLHWPVDRYFNESMR 180 (253)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSS-----SCSCEEC---SSCCEEEEEECCTTCCCEE
T ss_pred eEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCc-----cccceec---cCCceEEEEeccccccceE
Confidence 9999999999999999999999999999999999987654321110 1112110 0000000000001111111
Q ss_pred EEEeeec-CCCcHHHHHHHHHHHHHhcHHhHhhhHHhccCc
Q 022810 211 VVDHWLV-NGKHYAQTSEEWLKRMDNNLASIKPIMESTYGK 250 (291)
Q Consensus 211 ~~~~~~~-~~~~~~~t~~~w~~~l~~~~~~~~~~~~~~~~~ 250 (291)
...|.. ....|++|..+|.+.|.++||++.+..+...++
T Consensus 181 -~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~ 220 (253)
T 3g5l_A 181 -TSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAP 220 (253)
T ss_dssp -EEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCG
T ss_pred -EEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCCch
Confidence 112211 112355689999999999999998876555543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-20 Score=156.05 Aligned_cols=155 Identities=10% Similarity=0.114 Sum_probs=120.3
Q ss_pred hhHHHhhcCCChHHHHHhhCCCCCcccc---ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022810 8 DKAKEQHYELPTSFFKLVLGKYFKYSCC---YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 8 ~~~~~~~yd~~~~~y~~~~~~~~~y~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 84 (291)
...++++|+....+|+..++..+..... .+.. ....+. ...++..-...+.+.++.+|||||||+|.++..++.+
T Consensus 66 ~~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~-fpy~~~-~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~ 143 (298)
T 3fpf_A 66 LSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRS-FYFYPR-YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSH 143 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHT-STTHHH-HHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChHHhhcc-CCCccc-HHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHH
Confidence 3578899999999999988875533211 0000 011222 3344444345678899999999999999877555555
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022810 85 YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 85 ~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.++++|+|+|+|+.+++.|+++++..++++++++++|+.+++ .++||+|++... .++...+++++.++|||||+++
T Consensus 144 ~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 144 VYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp TTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEE
T ss_pred ccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEE
Confidence 568999999999999999999999888878999999998875 588999998654 5788999999999999999999
Q ss_pred EEee
Q 022810 165 VHHF 168 (291)
Q Consensus 165 i~~~ 168 (291)
+...
T Consensus 220 v~~~ 223 (298)
T 3fpf_A 220 YRTY 223 (298)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8764
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=145.28 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=95.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------------CCCCeEEEE
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~i~~~~ 119 (291)
+..++..+.+.++.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.|+++.... ...++++++
T Consensus 11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 334455566778899999999999999999988 789999999999999998875421 124799999
Q ss_pred ccccCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 120 ADISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+.+++.. ++||+|++..++++++ +...+++++.++|||||++++.+..
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 999998764 6899999999999884 4567999999999999996555543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=147.04 Aligned_cols=120 Identities=22% Similarity=0.302 Sum_probs=107.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
..+++.+...++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.+++++...++++++++.+|+.+.+.+ ++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence 455566677889999999999999999999985 6689999999999999999999998887899999999987765 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
||+|++..+++++++...+++++.++|+|||.+++.++....
T Consensus 107 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 107 VDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE 148 (219)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred eeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 999999999999999999999999999999999998776543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=150.71 Aligned_cols=118 Identities=24% Similarity=0.354 Sum_probs=102.0
Q ss_pred HHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022810 53 ELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (291)
..+++.+. ..++.+|||+|||+|..+..+++.+|+.+++|+|+|+.+++.+++++...+ +++++++|+.+.+.+++|
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~f 110 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFEEKY 110 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCCSCE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCCCCc
Confidence 44445444 457889999999999999999999988999999999999999998875544 799999999998766899
Q ss_pred cEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeeccCC
Q 022810 132 DRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
|+|++..+++++++.. .+++++.++|||||.+++.++....
T Consensus 111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 9999999999997655 5999999999999999998876543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=151.03 Aligned_cols=152 Identities=11% Similarity=0.055 Sum_probs=112.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-CccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~~~~~ 130 (291)
...+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|++++....+ ...+...+... ....++
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v-~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCV-TIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCC-EEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccc-eeeeeecccccccccCCC
Confidence 456667778889999999999999999999987 78999999999999999988654311 22222222200 111368
Q ss_pred ccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccCCc----------------------ccccccCCccchh
Q 022810 131 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTF----------------------AYHFEDTNDDDWI 186 (291)
Q Consensus 131 ~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~----------------------~~~~~~~~~~~w~ 186 (291)
||+|+++.+++|+ ++...+++++.++| |||+++++....... ...........|+
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~i 189 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHFREAGDVL 189 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHEETTTTEEEGGGTTHHH
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeeecCcccceehhhhhhHH
Confidence 9999999999987 45677999999999 999999986542110 0001113457899
Q ss_pred hhhccCCCCCCcHHHHHHhhc
Q 022810 187 TKYFFTGGTMPSANLLLYFQD 207 (291)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~ 207 (291)
.+++||+|.+|+..++.....
T Consensus 190 ~~~~~p~g~~~~~~~~~~~~~ 210 (261)
T 3iv6_A 190 DRALVPHGLIDKPTLLEWYRR 210 (261)
T ss_dssp HHHCCCCTTCCHHHHHHHHHH
T ss_pred HhccCCCCcccHHHHHHHHHh
Confidence 999999999998887775543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-19 Score=147.52 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
.....+++.+.+.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+++++.++.+|+.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 8 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred CCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 34456667778889999999999999999999987 469999999999999999999888887899999999988766
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++||+|++..+++|+++...+++++.++|||||.+++..+...
T Consensus 86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 128 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 128 (239)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 7899999999999999999999999999999999999876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=144.93 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=104.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~ 128 (291)
.....+++.+...++ +|||+|||+|.++..+++. ++.+++|+|+|+.+++.+++++...++ ++++++++|+.+++.+
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 445666677776666 9999999999999999988 688999999999999999999998887 4799999999997766
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++||+|++..+++++++...+++++.++|+|||.+++...
T Consensus 109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEec
Confidence 8899999999999999999999999999999999999764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-19 Score=148.52 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... +++++++|+.+...+++||+|++..+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 114 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQLPRRYDNIVLTHVLE 114 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCcCCcccEEEEhhHHH
Confidence 46779999999999999999987 55899999999999999876532 6899999998875448999999999999
Q ss_pred ccccHHHHHHHHH-hccccCeeEEEEeeccCC
Q 022810 142 HMKNYQNLLKKIS-KWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 142 ~~~~~~~~l~~~~-~~L~pgG~l~i~~~~~~~ 172 (291)
|++++..+++++. ++|||||++++.+++...
T Consensus 115 ~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 115 HIDDPVALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp GCSSHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred hhcCHHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 9999999999999 999999999998876543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=143.38 Aligned_cols=116 Identities=19% Similarity=0.297 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-----CeEEEEccccCC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-----NVEIIVADISTF 125 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~i~~~~~d~~~~ 125 (291)
..+.+++.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.+++++...+++ +++++++|+...
T Consensus 17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 344445555556788999999999999999998876689999999999999999998776653 799999999776
Q ss_pred ccC-CCccEEEEcccccccccH--HHHHHHHHhccccCeeEEEE
Q 022810 126 EME-ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.. ++||+|++..+++++++. ..+++++.++|||||++++.
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 655 799999999999999754 89999999999999966554
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=144.97 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=95.8
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. .+++++++|+.+++.+++||+|
T Consensus 37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHhhccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCCCCeEEE
Confidence 333334457889999999999999999987 7899999999999999988754 3789999999987666899999
Q ss_pred EEcccccccccHHH--HHHHHHhccccCeeEEEEeeccC
Q 022810 135 YSIEMFEHMKNYQN--LLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~~~~~--~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++..+++++++... +++++.++|||||.+++.++...
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 99999999988776 99999999999999999876543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=143.58 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-----CeEEEEcccc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-----NVEIIVADIS 123 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~i~~~~~d~~ 123 (291)
....+.+++.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.+++++...+++ +++++++|+.
T Consensus 15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 33444455555446788999999999999999998876689999999999999999998776653 7999999997
Q ss_pred CCccC-CCccEEEEcccccccccH--HHHHHHHHhccccCeeEEEE
Q 022810 124 TFEME-ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 124 ~~~~~-~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+.. ++||+|++..+++++++. ..+++++.++|||||++++.
T Consensus 95 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 95 YRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp SCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred ccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 76654 899999999999999755 79999999999999955443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=156.85 Aligned_cols=178 Identities=14% Similarity=0.133 Sum_probs=129.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.+...+++.+...++.+|||||||+|.++..+++..+ ..+|+++|+|+.+++.|++++...++++++++.+|+.+....
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 5567778888888999999999999999999998865 367999999999999999999998887799999999885443
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC--CcccccccCCccchhhhhccCCCCCCcHHHHHH-
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK--TFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY- 204 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~- 204 (291)
++||+|++..+++++. +.+.+.|||||++++...... .............|..++++|.+.+|.......
T Consensus 142 ~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 215 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLGNL 215 (317)
T ss_dssp GCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBCCGGGSCH
T ss_pred CCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECCCCcccceEEEEEEeCCcEEEEEeccEEEEEccCccccc
Confidence 7899999999999886 567889999999999865442 111100011134688888888887766432221
Q ss_pred hhcCcEEEEeeecCCCcHHHHHHHHHH-HHHhcHH
Q 022810 205 FQDDVSVVDHWLVNGKHYAQTSEEWLK-RMDNNLA 238 (291)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~t~~~w~~-~l~~~~~ 238 (291)
........ ....|.+|++.|.. ++.+...
T Consensus 216 ~~~~~~~~-----~~~~y~~tl~~~~~~~f~~~~~ 245 (317)
T 1dl5_A 216 LERNRKLL-----REFPFNREILLVRSHIFVELVD 245 (317)
T ss_dssp HHHHHTTC-----CCCCEEEEEECTTHHHHHHHHH
T ss_pred cccchhhh-----hcccchhhccCcchhhhhhhhh
Confidence 11111100 11226677778887 6665443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=140.14 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=111.4
Q ss_pred hHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCC
Q 022810 9 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 88 (291)
Q Consensus 9 ~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~ 88 (291)
+.+..+||..++.|...+........ . ....+..++... +.+|||+|||+|.++..+++. +.
T Consensus 3 ~~~~~~y~~~a~~y~~~~~~~~~~~~-------~-----~~~~l~~~~~~~----~~~vLDiGcG~G~~~~~l~~~--~~ 64 (203)
T 3h2b_A 3 DDVSKAYSSPTFDAEALLGTVISAED-------P-----DRVLIEPWATGV----DGVILDVGSGTGRWTGHLASL--GH 64 (203)
T ss_dssp CHHHHHHHCTTTCHHHHTCSSCCTTC-------T-----THHHHHHHHHHC----CSCEEEETCTTCHHHHHHHHT--TC
T ss_pred HHHHHHHhhHHHHHHHHhhhhccccH-------H-----HHHHHHHHhccC----CCeEEEecCCCCHHHHHHHhc--CC
Confidence 45778888888888776644222210 0 123344444332 779999999999999999987 77
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEE
Q 022810 89 KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i 165 (291)
+|+|+|+|+.+++.++++ .+++.++++|+.+++.+ ++||+|++..++++++ +...+++++.++|+|||.+++
T Consensus 65 ~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 139 (203)
T 3h2b_A 65 QIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139 (203)
T ss_dssp CEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999999999998876 23789999999998765 8999999999999996 899999999999999999999
Q ss_pred EeeccC
Q 022810 166 HHFCHK 171 (291)
Q Consensus 166 ~~~~~~ 171 (291)
..+...
T Consensus 140 ~~~~~~ 145 (203)
T 3h2b_A 140 SFFSGP 145 (203)
T ss_dssp EEECCS
T ss_pred EEccCC
Confidence 887554
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=138.12 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=99.8
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+++.+...++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++...+.+++.++.+|+.+.+..++||+|
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v 101 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFI 101 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEE
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEE
Confidence 344455667889999999999999999987 789999999999999999999888877799999999887656789999
Q ss_pred EEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 135 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++..++++++ +...+++++.++|+|||.+++..+.
T Consensus 102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 9999999986 8899999999999999998776543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=148.63 Aligned_cols=119 Identities=21% Similarity=0.352 Sum_probs=105.1
Q ss_pred HHHHHHHHHc-CCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 50 AMLELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
..+..+++.+ .+.++.+|||||||+|..+..+++.+| +.+|+|+|+|+.+++.+++++...+. +++++++|+.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~ 86 (284)
T 3gu3_A 8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIEL 86 (284)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCC
T ss_pred HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCc
Confidence 3344454443 556889999999999999999999887 48999999999999999999887765 89999999999876
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++||+|++..+++++++...+++++.++|||||++++..+.
T Consensus 87 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 87 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 789999999999999999999999999999999999998876
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=141.43 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=90.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-----------------hCCCCeEEEEcccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-----------------LELQNVEIIVADIS 123 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-----------------~~~~~i~~~~~d~~ 123 (291)
..++.+|||+|||+|..+..|++. |.+|+|||+|+.+++.|+++... ....+++++++|+.
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 357889999999999999999987 88999999999999999766531 01247999999999
Q ss_pred CCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 124 TFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 124 ~~~~~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++.. ++||+|++..++++++ +...+++++.++|||||++++.+..
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS 193 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 98765 7999999999998884 4677999999999999999766554
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=142.82 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=95.9
Q ss_pred HHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 54 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 54 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
.+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++ .+.++++++++|+.+....++||
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~~~~~D 109 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTPDRQWD 109 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCCSSCEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCCCCcee
Confidence 3334333 567789999999999999999988 7899999999999998877 45568999999999884348999
Q ss_pred EEEEcccccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022810 133 RIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|++..+++++++. ..+++++.++|+|||.+++.+++.
T Consensus 110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999999999874 889999999999999999988766
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=136.60 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
....++..+...++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.+++++...++++++++.+|+.+.... .
T Consensus 28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 335566777888999999999999999999999987799999999999999999999998887899999999765444 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|++..+++ +...+++++.++|+|||++++..+..
T Consensus 108 ~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 108 DPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp CCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred CCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 899999998775 77899999999999999999976543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=146.36 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=103.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.....+++.+...++.+|||||||+|..+..+++.+|+.+|+++|+|+.+++.++++ .+++.++.+|+.+++..+
T Consensus 20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~ 94 (259)
T 2p35_A 20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKPAQ 94 (259)
T ss_dssp HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCccC
Confidence 334566777777788999999999999999999988889999999999999998876 247899999999877448
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+||+|+++.+++++++...+++++.++|+|||.+++.++...
T Consensus 95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 136 (259)
T 2p35_A 95 KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNL 136 (259)
T ss_dssp CEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCT
T ss_pred CcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCC
Confidence 899999999999999999999999999999999999887543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=144.67 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=95.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc-ccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-MFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~-~l~ 141 (291)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+. ++.++++|+.+.+.+++||+|++.. +++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCccCCceEEEEcCcccc
Confidence 6789999999999999999987 78999999999999999999888776 7999999999876668899999998 999
Q ss_pred cc---ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 142 HM---KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+ ++...+++++.++|+|||.+++..++.
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 99 678899999999999999999977754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=142.94 Aligned_cols=163 Identities=17% Similarity=0.231 Sum_probs=116.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccC-CCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-ASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~--~~~-~~~D~v~~~ 137 (291)
+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ +.++.+|+.+. +.+ ++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 356789999999999999999988 77999999999999888754 77889998875 334 899999999
Q ss_pred ccccccc--cHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCC-CCCcHHHHH-Hh-hcCcEEE
Q 022810 138 EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGG-TMPSANLLL-YF-QDDVSVV 212 (291)
Q Consensus 138 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~ 212 (291)
.+++|++ +...+++++.++|||||++++.+++..... .+...+..+.. ...+...+. .+ ..++.++
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLY---------SLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHH---------HHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhH---------HHHHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 9999997 569999999999999999999988754321 12222222322 222323332 22 2456554
Q ss_pred EeeecC---------CCcHHHHHHHHHHH-HHhcHHhHhhh
Q 022810 213 DHWLVN---------GKHYAQTSEEWLKR-MDNNLASIKPI 243 (291)
Q Consensus 213 ~~~~~~---------~~~~~~t~~~w~~~-l~~~~~~~~~~ 243 (291)
+..... ..+ .+++..|.++ +.++...+...
T Consensus 180 ~~~~~~~~~~~~~l~~~~-~~~l~~w~~~~~~~~~~~~~~~ 219 (240)
T 3dli_A 180 KIEFFEECEELTKLAKID-SNTVSEEVIRVINENIEKLNRI 219 (240)
T ss_dssp EEEEECCCCTTTSCCCCC-CSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCcccccccccc-cccccHHHHHhhhhhHHHHHhh
Confidence 433221 123 5678889988 66666655543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=147.33 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
+++.+.+..+ .+.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++ .+++.++++|+++++.+ +
T Consensus 29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccCC
Confidence 3444544433 4569999999999999999987 6799999999999887653 24799999999998877 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+||+|++..++|++ +...+++++.++|||||+|++......
T Consensus 99 sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 99 SVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred cccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 99999999999877 578899999999999999988776543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=153.75 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=98.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHh-----C-C--CCeEEEEccccCC------
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL-----E-L--QNVEIIVADISTF------ 125 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~-----~-~--~~i~~~~~d~~~~------ 125 (291)
..++.+|||||||+|..+..+++.+ |+.+|+|+|+|+.+++.+++++... | . ++++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4578899999999999999999885 6789999999999999999988754 3 2 4899999999886
Q ss_pred ccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 126 EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+.+ ++||+|+++.+++++++...+++++.++|||||++++.++...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 207 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYAD 207 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccc
Confidence 555 7999999999999999999999999999999999999876543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-18 Score=140.78 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=97.4
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+ +++++++|+.+.+..++||+|
T Consensus 43 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v 118 (216)
T 3ofk_A 43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFSTAELFDLI 118 (216)
T ss_dssp HHHHTTTSSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCCSCCEEEE
T ss_pred HHHHcccCCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCCCCCccEE
Confidence 334556677889999999999999999987 5799999999999999998876543 799999999998755899999
Q ss_pred EEcccccccccH---HHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEHMKNY---QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+++.+++|+++. ..+++++.++|+|||.+++.++..
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999999999876 567999999999999999987654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=136.25 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---~~~~D~v~~~~ 138 (291)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...++++++++++|+.+... .++||+|+++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46889999999999999988775 356899999999999999999999888789999999988642 37899999999
Q ss_pred ccccc-ccHHHHHHHHHh--ccccCeeEEEEeeccCC
Q 022810 139 MFEHM-KNYQNLLKKISK--WMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 139 ~l~~~-~~~~~~l~~~~~--~L~pgG~l~i~~~~~~~ 172 (291)
++++. ++...+++.+.+ +|+|||++++.......
T Consensus 122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~ 158 (189)
T 3p9n_A 122 PYNVDSADVDAILAALGTNGWTREGTVAVVERATTCA 158 (189)
T ss_dssp CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence 98775 778899999999 99999999998876544
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=143.09 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHH------HHHHHHHHHHHhCC-C
Q 022810 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKT------QKEFIEEQCRVLEL-Q 113 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~------~~~~a~~~~~~~~~-~ 113 (291)
..+..++.+....+++.+.+.++.+|||||||+|.++..+++.+ |..+|+|+|+|+. +++.+++++...++ +
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~ 101 (275)
T 3bkx_A 22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD 101 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC
Confidence 35677788888889999888999999999999999999999885 5589999999997 99999999988777 5
Q ss_pred CeEEEEcc-c--cCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 114 NVEIIVAD-I--STFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 114 ~i~~~~~d-~--~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+++++.+| + ...+.+ ++||+|++..+++|+++...+++.+.++++|||.+++.++....
T Consensus 102 ~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 102 RLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP 164 (275)
T ss_dssp GEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred ceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 79999998 3 333434 78999999999999999888888888888889999998876643
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=144.77 Aligned_cols=107 Identities=12% Similarity=0.168 Sum_probs=94.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.+++++...+..++.++.+|+.+++.+ ++||+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 68899999999999999998875 569999999999999999988766444689999999887765 6899999999999
Q ss_pred cccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022810 142 HMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++++ ...+++++.++|+|||++++.++..
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence 9977 4589999999999999999987654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=141.03 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=91.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c--c-CCCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E--M-EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~--~-~~~~D~v~~~~ 138 (291)
++.+|||||||+|.++..+++.+|+..|+|+|+|+.+++.|++++...++++++++++|+.++ + . +++||.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 577999999999999999999998899999999999999999999999888899999999874 2 2 38999999985
Q ss_pred cccccc--cH------HHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHMK--NY------QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~--~~------~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+..+.. .. ..+++.+.++|||||++++.+..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 443331 11 35999999999999999997653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=139.55 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=106.6
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
..+.....+||...+.|...... ...+..++.. +.++.+|||+|||+|.++..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~~~--------------------~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~- 64 (211)
T 3e23_A 8 AFDDDTLRFYRGNATAYAERQPR--------------------SATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAA- 64 (211)
T ss_dssp CSCHHHHHHHHHSHHHHTTCCCC--------------------CHHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-
T ss_pred cccHHHHHHHHHHHHHHhhccch--------------------hHHHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-
Confidence 34456667777666555433221 1233444443 346889999999999999999987
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHHHhccccCeeE
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l 163 (291)
+.+|+|+|+|+.+++.++++. ++.++.+|+..++..++||+|++..++++++ +...+++++.++|||||++
T Consensus 65 -~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 137 (211)
T 3e23_A 65 -GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLF 137 (211)
T ss_dssp -TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred -CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCCCCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEE
Confidence 789999999999999998876 4667889998887558999999999999997 7889999999999999999
Q ss_pred EEEeecc
Q 022810 164 FVHHFCH 170 (291)
Q Consensus 164 ~i~~~~~ 170 (291)
++..+..
T Consensus 138 ~~~~~~~ 144 (211)
T 3e23_A 138 YASYKSG 144 (211)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 9986543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-18 Score=144.54 Aligned_cols=113 Identities=24% Similarity=0.327 Sum_probs=99.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
..+++.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. +++.++.+|+.+++.+++||
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD 119 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVDKPLD 119 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCSSCEE
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcCCCcC
Confidence 3455566677889999999999999999998 4889999999999999988764 37889999999877668999
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+|++..+++++++...+++++.++|||||++++..+....
T Consensus 120 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~ 159 (279)
T 3ccf_A 120 AVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGN 159 (279)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcc
Confidence 9999999999999999999999999999999998876543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=143.21 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=96.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHh-C-CCCeEEEEccccCCccC-------CC
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL-E-LQNVEIIVADISTFEME-------AS 130 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~-~-~~~i~~~~~d~~~~~~~-------~~ 130 (291)
..++.+|||||||+|..+..+++.+ ++.+|+|+|+|+.+++.|++++... + .++++++++|+.+++.. ++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 3578999999999999999999876 7899999999999999999998876 2 35899999999987643 48
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|++..+++++ +...+++++.++|+|||.+++....
T Consensus 114 fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 114 IDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999999999999 9999999999999999999885544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-19 Score=145.43 Aligned_cols=198 Identities=16% Similarity=0.166 Sum_probs=132.2
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC
Q 022810 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p 86 (291)
.+..+..+||...+.|......... ..........+++.+...++.+|||||||+|.++..+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-- 73 (227)
T 3e8s_A 9 PEDALLDSWHQNAQAWIDAVRHGAI-------------ESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR-- 73 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC-------------HHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT--
T ss_pred HHHHHHHHHHhhHHHHHHHhccccc-------------ccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC--
Confidence 4466778888766666654322111 1111112233444444456789999999999999999987
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---ccC--CCccEEEEcccccccccHHHHHHHHHhccccCe
Q 022810 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~---~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 161 (291)
+.+|+|+|+|+.+++.++++ .++.+..+|+.++ +.. .+||+|++..+++ ..+...+++++.++|+|||
T Consensus 74 ~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG 146 (227)
T 3e8s_A 74 GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGG 146 (227)
T ss_dssp TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCe
Confidence 78999999999999988876 2677888888776 322 5699999999998 8889999999999999999
Q ss_pred eEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHh
Q 022810 162 LLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 241 (291)
Q Consensus 162 ~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~~~ 241 (291)
++++.+++........ -...|....+..- . .... ....+..+..+|.+.|.++||++.
T Consensus 147 ~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~---------~~~~-------~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 147 ALVIQTLHPWSVADGD---YQDGWREESFAGF---A---------GDWQ-------PMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp EEEEEECCTTTTCTTC---CSCEEEEECCTTS---S---------SCCC-------CEEEEECCHHHHHHHHHHTTEEEE
T ss_pred EEEEEecCccccCccc---cccccchhhhhcc---c---------cCcc-------cceEEEecHHHHHHHHHHcCCeEE
Confidence 9999988765432210 0122222110000 0 0000 001123478899999999999988
Q ss_pred hhHHhcc
Q 022810 242 PIMESTY 248 (291)
Q Consensus 242 ~~~~~~~ 248 (291)
+..++..
T Consensus 205 ~~~~~~~ 211 (227)
T 3e8s_A 205 SLQEPQH 211 (227)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 7654333
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=132.59 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCC-ccC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF-EME 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~-~~~ 128 (291)
....+++.+...++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.+++++...+.+ ++ ++.+|..+. +..
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence 345566677788899999999999999999999888899999999999999999999988885 78 888888553 322
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++||+|++..++++ ..+++++.+.|+|||.+++..+..
T Consensus 92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp CSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred CCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 78999999998876 678999999999999999877644
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=139.53 Aligned_cols=142 Identities=15% Similarity=0.342 Sum_probs=110.7
Q ss_pred hhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022810 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 13 ~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~ 92 (291)
..|+..+++|+.++.... ... ......+..++......++.+|||+|||+|..+..+++. +.+|+|
T Consensus 3 ~~y~~~a~~yd~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~g 68 (252)
T 1wzn_A 3 ELYTLLAEYYDTIYRRRI-----------ERV-KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVG 68 (252)
T ss_dssp GGGTTTGGGHHHHTHHHH-----------HTH-HHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEE
T ss_pred hHHHHHHHHHHHHHhcch-----------hhh-HHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC--CCeEEE
Confidence 467777777776532100 011 122345566666666667889999999999999999987 789999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc-ccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 93 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-MFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~-~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+|+.+++.++++....+. ++.++++|+.+.+.+++||+|++.. .+++. ++...+++++.++|+|||.+++..++
T Consensus 69 vD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 69 LDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 99999999999999988776 7999999999877668899999864 34443 46788999999999999999987765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.5e-18 Score=144.75 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=96.9
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC----CCeEEEEccccCCc---c
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----QNVEIIVADISTFE---M 127 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~----~~i~~~~~d~~~~~---~ 127 (291)
+.+.+...++.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|+++....+. .++.+..+|+..++ .
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 126 (293)
T 3thr_A 49 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP 126 (293)
T ss_dssp HHHHHHHTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred HHHHhcccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc
Confidence 333334456789999999999999999987 67999999999999999988754332 36889999998876 4
Q ss_pred C-CCccEEEEc-cccccccc-------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 128 E-ASYDRIYSI-EMFEHMKN-------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~-~~~D~v~~~-~~l~~~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+ ++||+|++. .+++|+++ ...+++++.++|||||++++..++.
T Consensus 127 ~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 127 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 4 899999998 89999988 9999999999999999999988764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=141.52 Aligned_cols=106 Identities=23% Similarity=0.328 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ...++.++++|+.+++.+ ++||+|++..++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 47789999999999999999987 789999999999999888764 224799999999988765 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+|+++...+++++.++|+|||++++.++....
T Consensus 127 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 158 (242)
T 3l8d_A 127 EWTEEPLRALNEIKRVLKSDGYACIAILGPTA 158 (242)
T ss_dssp TSSSCHHHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred hhccCHHHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence 99999999999999999999999998876543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=142.58 Aligned_cols=105 Identities=22% Similarity=0.356 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++++++|+.+.+..++||+|+++.+++
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANIQENYDFIVSTVVFM 195 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccccCCccEEEEccchh
Confidence 36889999999999999999987 77999999999999999999998888 8999999999876668999999999999
Q ss_pred cc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 142 HM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++ ++...+++++.++|+|||.+++....
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 98 45679999999999999998776543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=146.35 Aligned_cols=157 Identities=10% Similarity=0.028 Sum_probs=109.9
Q ss_pred hHHHhhcCCChHHHHHhhCCCCCccc--c-ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 9 KAKEQHYELPTSFFKLVLGKYFKYSC--C-YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 9 ~~~~~~yd~~~~~y~~~~~~~~~y~~--~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
+..+-+|+..+++...|......|.. . +.......+.......+..+...+ ..++.+|||||||+|.++..+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~ 82 (236)
T 1zx0_A 4 PSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAP 82 (236)
T ss_dssp ----CCSCTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSC
T ss_pred CCCCCccCCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcC
Confidence 44556888888998888877666642 1 111111122222233334444433 4578899999999999999997653
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccC-CCccEEEE-cccc----cccccHHHHHHHHHhcc
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-ASYDRIYS-IEMF----EHMKNYQNLLKKISKWM 157 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~--~~~-~~~D~v~~-~~~l----~~~~~~~~~l~~~~~~L 157 (291)
..+|+|+|+|+.+++.|+++....+ .++.++++|+.+. +.+ ++||+|++ ...+ .+..+...++++++++|
T Consensus 83 -~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~L 160 (236)
T 1zx0_A 83 -IDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLL 160 (236)
T ss_dssp -EEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHE
T ss_pred -CCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhc
Confidence 3589999999999999999887666 3799999999887 555 78999999 4433 12234557899999999
Q ss_pred ccCeeEEEEee
Q 022810 158 KEDTLLFVHHF 168 (291)
Q Consensus 158 ~pgG~l~i~~~ 168 (291)
||||++++...
T Consensus 161 kpgG~l~~~~~ 171 (236)
T 1zx0_A 161 KPGGVLTYCNL 171 (236)
T ss_dssp EEEEEEEECCH
T ss_pred CCCeEEEEEec
Confidence 99999987544
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=132.12 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDR 133 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~ 133 (291)
+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++ .+++++..+| .+.+ ++||+
T Consensus 9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~ 78 (170)
T 3i9f_A 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDF 78 (170)
T ss_dssp THHHHHSSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEE
T ss_pred HHHhcCcCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEE
Confidence 3444456788899999999999999999884 4999999999999998877 3479999999 3333 78999
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
|++..+++++++...+++++.++|+|||++++..+....
T Consensus 79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 79 ILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp EEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred EEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 999999999999999999999999999999998876543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=140.60 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.........+++.+...++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.+++++... .++.++++|+.++
T Consensus 76 ~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~ 152 (254)
T 1xtp_A 76 DVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETA 152 (254)
T ss_dssp HHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGC
T ss_pred HHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHC
Confidence 3444555677777777788999999999999999999875 568999999999999999877544 4799999999987
Q ss_pred ccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 126 EME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.+ ++||+|++..+++++ ++...+++++.++|||||++++.++.
T Consensus 153 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 765 789999999999999 56889999999999999999998763
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=131.97 Aligned_cols=117 Identities=15% Similarity=0.314 Sum_probs=102.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEEccccCCccCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~--i~~~~~d~~~~~~~~ 129 (291)
...+++.+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...++++ ++++.+|+.+....+
T Consensus 41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 445666677778899999999999999999987 7899999999999999999999888865 999999998854447
Q ss_pred CccEEEEcccccc-cccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|+++.++++ ..+...+++++.++|+|||.+++..+..
T Consensus 119 ~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 8999999998877 4677899999999999999999987754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=140.28 Aligned_cols=104 Identities=13% Similarity=0.247 Sum_probs=94.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++ ..+.+++.++.+|+.+++.+ ++||+|++..
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 4567889999999999999999987 789999999999999999887 33345899999999988765 7899999999
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEE
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++++++...+++++.++|+|||.+++.
T Consensus 113 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 9999999999999999999999999887
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-18 Score=140.87 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=98.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
+..++.....++ .+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+. .+++++++|+.+.+..++
T Consensus 56 l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 132 (235)
T 3lcc_A 56 IVHLVDTSSLPL-GRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTEL 132 (235)
T ss_dssp HHHHHHTTCSCC-EEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSC
T ss_pred HHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCC
Confidence 334444444444 59999999999999999864 78999999999999999998876433 479999999999776689
Q ss_pred ccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|++..++++++ +...+++++.++|+|||++++..+..
T Consensus 133 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 133 FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp EEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred eeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 99999999999997 88999999999999999999876644
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-17 Score=135.55 Aligned_cols=120 Identities=19% Similarity=0.273 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.......+.+.+.+ .++.+|||+|||+|..+..+++.. .+++++|+|+.+++.++++....+ .+++++++|+.+.
T Consensus 23 ~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~ 97 (227)
T 1ve3_A 23 SRIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL 97 (227)
T ss_dssp HHHHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC
T ss_pred HHHHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcC
Confidence 33344445554443 347899999999999999999884 499999999999999999988776 4899999999987
Q ss_pred ccC-CCccEEEEccc--ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 126 EME-ASYDRIYSIEM--FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~--l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+.+ ++||+|+++.+ +++.++...+++++.++|+|||.+++..++.
T Consensus 98 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 98 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 655 78999999999 6666788899999999999999999988764
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=141.52 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=95.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~D~v~~~ 137 (291)
+.++.+|||||||+|..+..+++. +..+|+|+|+|+.+++.|+++....+. .++.++++|+.+.+. +++||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 467889999999999999998877 245999999999999999999887766 479999999998765 3789999999
Q ss_pred ccccc----cccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 138 EMFEH----MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 138 ~~l~~----~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++++ .++...+++++.++|+|||.+++.+++.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 99976 4678899999999999999999988765
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=137.70 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=92.3
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
.++..+.. ++.+|||+|||+|..+..+ +. +++|+|+|+.+++.++++. +++.++++|+.+++.+ ++|
T Consensus 28 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~f 96 (211)
T 2gs9_A 28 RALKGLLP-PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESF 96 (211)
T ss_dssp HHHHTTCC-CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCE
T ss_pred HHHHHhcC-CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcE
Confidence 34444433 7889999999999998877 44 9999999999999988765 3789999999988765 789
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
|+|++..+++|+++...+++++.++|||||.+++.+++..
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 97 DVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999887654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=141.82 Aligned_cols=114 Identities=16% Similarity=0.250 Sum_probs=99.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
...+.+++.+...++.+|||||||+|..+..+++ ++.+|+|+|+|+.+++.++++. +++++++|+.+++.+
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCC
Confidence 3456666777778899999999999999999997 4899999999999887765432 799999999998766
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
++||+|++..+++|+++...+++++.++|| ||.+++.++....
T Consensus 93 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~ 135 (261)
T 3ege_A 93 KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRL 135 (261)
T ss_dssp TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence 899999999999999999999999999999 9998888876543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=131.72 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=96.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-~~ 130 (291)
..++..+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++..+++ +++++.+|+.+.... .+
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 34566677888999999999999999999987 889999999999999999999999886 899999999884333 68
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|++...+ +.. +++++.+.|+|||++++.....
T Consensus 123 ~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 123 PEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp CSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred CCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 9999988754 456 9999999999999999987643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-17 Score=133.48 Aligned_cols=112 Identities=18% Similarity=0.120 Sum_probs=99.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
.....+++.+...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...++++++++.+|+.+....
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 44556677778889999999999999999999988 789999999999999999999998887899999999886544
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++||+|+++.+++++++ .+.+.|+|||++++..+.
T Consensus 142 ~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 78999999999998875 578999999999998776
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-17 Score=135.03 Aligned_cols=134 Identities=19% Similarity=0.341 Sum_probs=105.8
Q ss_pred hcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEE
Q 022810 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI 93 (291)
Q Consensus 14 ~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~v 93 (291)
.||..++.|+..... ..| ......+.+.+ .++.+|||+|||+|.++..+++. .+++|+
T Consensus 3 ~y~~~a~~yd~~~~~-~~~----------------~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~---~~v~~v 60 (243)
T 3d2l_A 3 AYEQFAYVYDELMQD-VPY----------------PEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH---YEVTGV 60 (243)
T ss_dssp ---CTTHHHHHHTTT-CCH----------------HHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT---SEEEEE
T ss_pred hHHHHHHHHHHhhhc-ccH----------------HHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC---CeEEEE
Confidence 578788888876532 112 23334444443 35689999999999999998865 799999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc-ccccc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 94 CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-MFEHM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 94 D~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~-~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+|+.+++.++++....+. +++++++|+.+.+.+++||+|++.. +++|+ .+...+++++.++|+|||.+++..++
T Consensus 61 D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 61 DLSEEMLEIAQEKAMETNR-HVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp ESCHHHHHHHHHHHHHTTC-CCEEEECCGGGCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ECCHHHHHHHHHhhhhcCC-ceEEEEcChhhcCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9999999999999887664 7999999998876668899999986 88888 56778999999999999999997765
Q ss_pred c
Q 022810 170 H 170 (291)
Q Consensus 170 ~ 170 (291)
+
T Consensus 140 ~ 140 (243)
T 3d2l_A 140 P 140 (243)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=131.07 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=89.3
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEEEc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~v~~~ 137 (291)
.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|++++...+++++++++.+...+. .+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 4567899999999999999999987 8899999999999999999999988878999998887743 23789999987
Q ss_pred cc-ccc--------cccHHHHHHHHHhccccCeeEEEEeec
Q 022810 138 EM-FEH--------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~-l~~--------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.. +.+ ..+...+++++.++|||||.+++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 42 221 144567889999999999999887653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=138.14 Aligned_cols=112 Identities=13% Similarity=0.208 Sum_probs=97.2
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
.+...+...++.+|||||||+|..+..+++. +. +|+|+|+|+.+++.++++... .++.++++|+.+.+.+ ++|
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCc
Confidence 3445566668899999999999999999987 55 999999999999998876532 3689999999987765 789
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+|++..+++++++...+++++.++|+|||++++.++++
T Consensus 109 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 109 DLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred eEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence 999999999999999999999999999999999988654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=143.76 Aligned_cols=119 Identities=11% Similarity=0.229 Sum_probs=99.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~~~ 127 (291)
....+++.+...++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+. .+++++++|+.+++.
T Consensus 71 ~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 71 EAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34455555554444 9999999999999999987 78999999999999999999887663 479999999999877
Q ss_pred CCCccEEEEc-ccccccc--cHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 128 EASYDRIYSI-EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 128 ~~~~D~v~~~-~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+++||+|++. .++++++ +...+++++.++|+|||+|++.+++...
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 7899999865 5676664 4688999999999999999999887653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=139.33 Aligned_cols=118 Identities=17% Similarity=0.311 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
..+++.+++.+. .++.+|||+|||+|..+..+++..|+.+|+++|+|+.+++.+++++...++++++++++|+.+....
T Consensus 96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 174 (276)
T 2b3t_A 96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG 174 (276)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhccc
Confidence 445566666665 5678999999999999999999888899999999999999999999998887899999999875334
Q ss_pred CCccEEEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++||+|++++++... .....+++.+.+.|+|||++++..
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 789999999655332 245778999999999999999864
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=144.68 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=99.4
Q ss_pred CCCCCCEEEEEcCCcchHHHHHH-HHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIA-QKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~-~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
.+.++.+|||||||+|..+..++ ...|+.+|+|+|+|+.+++.+++++...++. +++++++|+.+.+.+++||+|+++
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN 194 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence 35678999999999999999986 4567889999999999999999999887774 599999999998766899999999
Q ss_pred ccccccccHHH---HHHHHHhccccCeeEEEEeeccCC
Q 022810 138 EMFEHMKNYQN---LLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 138 ~~l~~~~~~~~---~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.+++++++... +++++.++|||||++++.++....
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 232 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPP 232 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCT
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence 99999977665 799999999999999998766543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=134.06 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=94.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
..++.+|||+|||+|..+..++.. ++.+|+|+|+|+.+++.+++++...+. ++.++++|+.+.+.+ ++||+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCCCCCceeEEEEcCh
Confidence 346789999999999985544434 378999999999999999999887764 789999999987765 78999999999
Q ss_pred cccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 140 FEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 140 l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
++|+ ++...+++++.++|+|||.+++..++...
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 9999 78899999999999999999998887654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-17 Score=132.93 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~~~ 138 (291)
.++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|++++...+++++.++++|+.+++ .+ ++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 35789999999999999999999988999999999999999999999988888999999998865 33 7899999997
Q ss_pred cccccc--------cHHHHHHHHHhccccCeeEEEEee
Q 022810 139 MFEHMK--------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+..+.. ....+++.+.++|+|||.+++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 654332 236799999999999999998653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=135.48 Aligned_cols=108 Identities=23% Similarity=0.431 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CCeEEEEccccCCccC-CCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~i~~~~~d~~~~~~~-~~~D~v~ 135 (291)
+++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....++ +++.++.+|+..++.+ ++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 47889999999999999999987 78999999999999999998876665 2589999999988765 8899999
Q ss_pred EcccccccccHH---HHHHHHHhccccCeeEEEEeeccC
Q 022810 136 SIEMFEHMKNYQ---NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 136 ~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+..+++++++.. .+++++.++|+|||++++.++...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 999999998877 899999999999999999887653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=140.91 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCcchHHHH----HHHHCCCCEE--EEEcCCHHHHHHHHHHHHHh-CCCCeE--EEEccccCCc------
Q 022810 62 EDGHTVLDVGCGWGSLSLY----IAQKYSNCKI--TGICNSKTQKEFIEEQCRVL-ELQNVE--IIVADISTFE------ 126 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~----l~~~~p~~~v--~~vD~s~~~~~~a~~~~~~~-~~~~i~--~~~~d~~~~~------ 126 (291)
.++.+|||||||+|..+.. ++..+|+..| +++|+|+.|++.|++++... +++++. +..++++++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 5678999999999976653 3445566754 99999999999999988653 444554 4566665543
Q ss_pred c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 127 M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
. +++||+|++..+++|++|+..++++++++|||||++++.....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 2 3789999999999999999999999999999999999986543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=139.28 Aligned_cols=139 Identities=15% Similarity=0.250 Sum_probs=105.5
Q ss_pred HHhhcC-CChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE
Q 022810 11 KEQHYE-LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89 (291)
Q Consensus 11 ~~~~yd-~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~ 89 (291)
.+..|+ ..+++|+.+.... ..........+.+.+...+ .++.+|||||||+|.++..+++. +.+
T Consensus 10 ~~~~y~~~~a~~yd~~~~~~-----------~~~~~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~ 74 (263)
T 3pfg_A 10 PQADYSGEIAELYDLVHQGK-----------GKDYHREAADLAALVRRHS--PKAASLLDVACGTGMHLRHLADS--FGT 74 (263)
T ss_dssp CBCSCCHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT--SSE
T ss_pred cccccchhHHHHHHHHhhcC-----------CCCHHHHHHHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc--CCe
Confidence 345666 6667777665321 0112222233334443332 45689999999999999999987 679
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc-cccccc---cHHHHHHHHHhccccCeeEEE
Q 022810 90 ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-MFEHMK---NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~-~l~~~~---~~~~~l~~~~~~L~pgG~l~i 165 (291)
|+|+|+|+.+++.|+++. .++.++++|+.+++.+++||+|++.. ++++++ +...+++++.++|+|||.+++
T Consensus 75 v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i 149 (263)
T 3pfg_A 75 VEGLELSADMLAIARRRN-----PDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149 (263)
T ss_dssp EEEEESCHHHHHHHHHHC-----TTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEECCHHHHHHHHhhC-----CCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999988764 27899999999987678999999998 999994 667899999999999999999
Q ss_pred Eeec
Q 022810 166 HHFC 169 (291)
Q Consensus 166 ~~~~ 169 (291)
....
T Consensus 150 ~~~~ 153 (263)
T 3pfg_A 150 EPWW 153 (263)
T ss_dssp CCCC
T ss_pred Eecc
Confidence 7543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=132.62 Aligned_cols=112 Identities=13% Similarity=0.250 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~ 128 (291)
.....+...+ .+..+|||||||+|.++..++...|+++|+++|+|+.+++.+++++...|.. ++++ +|......+
T Consensus 38 ~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~ 113 (200)
T 3fzg_A 38 DFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYK 113 (200)
T ss_dssp HHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTT
T ss_pred HHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCC
Confidence 3344444444 4578999999999999999999889999999999999999999999998885 5666 666554445
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
++||+|++..++|++++.+..+.++.+.|+|||+++-
T Consensus 114 ~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 114 GTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp SEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred CCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 8899999999999997777788899999999998654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=137.24 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=91.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccEEEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~D~v~~ 136 (291)
+.++.+|||||||+|..+..++...|+.+|+|+|+|+.+++.+++++...++++++++++|+.+++. .++||+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 3567899999999999999999877789999999999999999999999988789999999987653 378999999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.. +.+...+++.+.++|+|||.+++.
T Consensus 148 ~~----~~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 148 RA----VARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp EC----CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred ec----cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 76 367889999999999999999885
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-17 Score=133.04 Aligned_cols=106 Identities=23% Similarity=0.240 Sum_probs=91.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~~~~ 139 (291)
++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|++++...+++++.++++|+.+++ .+ ++||.|+++.+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 5779999999999999999999989999999999999999999999888888999999998854 33 78999998765
Q ss_pred cccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 140 FEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..+... ...+++.+.++|+|||.+++.+.
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 433321 36799999999999999998763
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=135.95 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=112.4
Q ss_pred ChHHHHHhhCCCCCcccc-----ccCC---CCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCc---chHHHHHHHHC
Q 022810 18 PTSFFKLVLGKYFKYSCC-----YFSD---ASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGW---GSLSLYIAQKY 85 (291)
Q Consensus 18 ~~~~y~~~~~~~~~y~~~-----~~~~---~~~~l~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~---G~~~~~l~~~~ 85 (291)
....|+.+++...+|... .+.. ........+...+..+++.+. ..+..+|||||||+ |..+..+++..
T Consensus 23 ~ar~~d~~l~g~~~~~~d~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~ 102 (274)
T 2qe6_A 23 IARVYDALLGGKDNFEADRALADYACKHIPGLKESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVN 102 (274)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHC
T ss_pred hHHHHHHhcCCccCCHHHHHHHHHHHHhcchhHHHHHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhC
Confidence 356788888765555210 0100 001123334445555555554 33457999999999 99888888788
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----------cC-CCccEEEEccccccccc--HHHHHH
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----------ME-ASYDRIYSIEMFEHMKN--YQNLLK 151 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-----------~~-~~~D~v~~~~~l~~~~~--~~~~l~ 151 (291)
|+.+|+++|+|+.+++.|++++.. .++++++++|+.+.. .+ .+||+|++..++|++++ ...+++
T Consensus 103 p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~ 180 (274)
T 2qe6_A 103 PDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVG 180 (274)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHH
T ss_pred CCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHH
Confidence 889999999999999999988743 247999999997632 22 57999999999999976 899999
Q ss_pred HHHhccccCeeEEEEeecc
Q 022810 152 KISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 152 ~~~~~L~pgG~l~i~~~~~ 170 (291)
++.++|+|||+|++.+...
T Consensus 181 ~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 181 AYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHHSCTTCEEEEEEEBC
T ss_pred HHHHhCCCCcEEEEEEecC
Confidence 9999999999999988754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-16 Score=139.17 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=103.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.++..++.+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+ +.+..
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~~ 268 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPDG 268 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCSS
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCCC
Confidence 45666777778889999999999999999999999999999999 9999999999988876 579999999984 33358
Q ss_pred ccEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeeccC
Q 022810 131 YDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
||+|++..+++++++.. .+++++++.|+|||++++.++..+
T Consensus 269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99999999999997765 799999999999999999876543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=141.96 Aligned_cols=105 Identities=19% Similarity=0.371 Sum_probs=89.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC------------------------------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------------------------ 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~------------------------------ 112 (291)
++.+|||||||+|..+..+++.+++.+|+|+|+|+.+++.|++++...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 68899999999999999999998889999999999999999987654331
Q ss_pred ----------------------------CCeEEEEccccCCc------cCCCccEEEEcccccccc------cHHHHHHH
Q 022810 113 ----------------------------QNVEIIVADISTFE------MEASYDRIYSIEMFEHMK------NYQNLLKK 152 (291)
Q Consensus 113 ----------------------------~~i~~~~~d~~~~~------~~~~~D~v~~~~~l~~~~------~~~~~l~~ 152 (291)
.+++++++|+.... ..++||+|+|..+++|+. +...++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998654 237899999999997774 77889999
Q ss_pred HHhccccCeeEEEEe
Q 022810 153 ISKWMKEDTLLFVHH 167 (291)
Q Consensus 153 ~~~~L~pgG~l~i~~ 167 (291)
+.++|+|||+|++..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999864
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=137.82 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=103.3
Q ss_pred HHHHHHHcCC--CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022810 52 LELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 52 ~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~ 128 (291)
...+++.++. .++.+|||+|||+|..+..+++.+|+.+++++|++ .+++.+++++...++. +++++.+|+.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence 3455666666 77889999999999999999999988999999999 9999999999888874 699999999886555
Q ss_pred CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
..||+|++..+++++ ++...+++++.++|+|||++++.++...
T Consensus 231 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 569999999999999 4457899999999999999998876543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-16 Score=129.05 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=91.1
Q ss_pred CCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-cC-CCccEEEE
Q 022810 60 RLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-ME-ASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-~~-~~~D~v~~ 136 (291)
.+.++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.|++++...++ +++++++|+.... .+ ++||+|++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEE
Confidence 35688999999999 999999999886 78999999999999999999999988 8999999975432 22 78999999
Q ss_pred ccccccccc-------------------HHHHHHHHHhccccCeeEEEEeec
Q 022810 137 IEMFEHMKN-------------------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.++.+..+ ...+++.+.++|+|||++++..+.
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 988765432 478999999999999999997654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=139.77 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=99.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDR 133 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~ 133 (291)
+++.++..+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+ +.+.+||+
T Consensus 161 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D~ 238 (332)
T 3i53_A 161 IAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAGG 238 (332)
T ss_dssp GGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCSE
T ss_pred HHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCcE
Confidence 34444556678999999999999999999999999999999 9999999999988887 579999999974 33348999
Q ss_pred EEEcccccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|++..++|++++. ..+++++++.|+|||++++.++..
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 9999999999774 889999999999999999977644
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=129.46 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.++ +|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+. ++.++++|+.+.+.+ ++||+|++....
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~~ 104 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIVSIFCH 104 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTTCSEEEEECCC
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCCccEEEEEhhc
Confidence 456 9999999999999999987 77999999999999999999988877 899999999987755 789999996443
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.+..+...+++++.++|+|||.+++.++....
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 33357889999999999999999999886544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=137.99 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=88.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH----HHhCCCCeEEEEccccCCccC-CCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC----RVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~----~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
+.+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.+.+.+ ...+.++++++++|+.+++.. +.
T Consensus 21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~- 99 (218)
T 3mq2_A 21 EQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV- 99 (218)
T ss_dssp HHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-
T ss_pred HHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-
Confidence 334466888999999999999999999998999999999999888644333 235556899999999998766 44
Q ss_pred cEEEEcc---cc--cccccHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIE---MF--EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~---~l--~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|.|++.. .. +++++...+++++.++|||||.+++...
T Consensus 100 d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 100 GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 7666433 22 2556778999999999999999998554
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-18 Score=145.47 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=92.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ ++++++++|+.+....++||+|+++.+++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 6889999999999999999987 68999999999999999999999988 58999999999876558999999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEe
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+..+....+.++.++|+|||.+++..
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CcchhhhHHHHHHhhcCCcceeHHHH
Confidence 98777667888999999999976643
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=132.38 Aligned_cols=102 Identities=12% Similarity=0.282 Sum_probs=88.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEE-cccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS-IEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~-~~~l 140 (291)
.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++. +++.++++|+.+.+.+++||+|+| ..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 111 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRLGRKFSAVVSMFSSV 111 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCCSSCEEEEEECTTGG
T ss_pred CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcccCCCCcEEEEcCchH
Confidence 567899999999999999999884 49999999999999988763 368999999998766678999996 4488
Q ss_pred ccc---ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 141 EHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|+ ++...+++++.++|+|||.+++..+..
T Consensus 112 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 112 GYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp GGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 888 456789999999999999999976554
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-17 Score=131.63 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc---CCC-ccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM---EAS-YDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~---~~~-~D~v~~ 136 (291)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...++ ++++++++|+.+... .++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 57899999999999999877663 36999999999999999999999887 689999999887532 367 999999
Q ss_pred cccccccccHHHHHHHH--HhccccCeeEEEEeeccC
Q 022810 137 IEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~--~~~L~pgG~l~i~~~~~~ 171 (291)
+.+++ ..+...+++.+ .++|+|||.+++......
T Consensus 132 ~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 132 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 98854 56778888988 668999999999876554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=129.16 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=93.2
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cCCCccEEE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~D~v~ 135 (291)
.+.++.+|||+|||+|..+..+++.. |..+|+|+|+++.+++.|++++...++ ++++++++|+.++. .+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 45678999999999999999999885 467999999999999999999999887 68999999998874 227899999
Q ss_pred Ecccccc---------cccHHHHHHHHHhccccCeeEEEEeec
Q 022810 136 SIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++.++.. ..+...+++++.++|+|||++++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 9876511 124567999999999999999987654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=139.64 Aligned_cols=117 Identities=10% Similarity=0.092 Sum_probs=102.9
Q ss_pred HHHHHcCCCC-CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cCC
Q 022810 54 LYCERSRLED-GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--MEA 129 (291)
Q Consensus 54 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~~ 129 (291)
.+++.++..+ +.+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++....++ ++++++.+|+.+.+ .++
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence 5556666666 88999999999999999999999999999999 8899999999988877 46999999999876 557
Q ss_pred CccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeeccC
Q 022810 130 SYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.||+|++..++|++++. ..+++++++.|+|||++++.++..+
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 79999999999999754 8899999999999999999876543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=129.82 Aligned_cols=101 Identities=17% Similarity=0.286 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
++.+|||+|||+|..+..+++.+|+.+++++|+|+.+++.+++++...++++++++++|+.+....++||+|+++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~---- 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA---- 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC----
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec----
Confidence 4789999999999999999998888999999999999999999999988867999999999876447899999864
Q ss_pred cccHHHHHHHHHhccccCeeEEEEe
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+.+...+++.+.++|+|||.+++..
T Consensus 141 ~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 141 FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 3567899999999999999998864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=127.93 Aligned_cols=121 Identities=8% Similarity=0.160 Sum_probs=96.9
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC-c-
Q 022810 51 MLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-E- 126 (291)
Q Consensus 51 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~-~- 126 (291)
..+.+++.+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++ ++++++.+|+.+. +
T Consensus 18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (177)
T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC 96 (177)
T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh
Confidence 3445555554 567889999999999999999977 457999999999999999999998887 3799999999874 2
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHH--hccccCeeEEEEeeccCCc
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~~~ 173 (291)
..++||+|+++.+++ .......++.+. ++|+|||++++........
T Consensus 97 ~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~ 144 (177)
T 2esr_A 97 LTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKTVLL 144 (177)
T ss_dssp BCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred hcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCcccc
Confidence 226799999998763 244566777776 9999999999988765543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=140.11 Aligned_cols=116 Identities=11% Similarity=0.156 Sum_probs=96.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC---CeEEEEccccCCccCCC
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ---NVEIIVADISTFEMEAS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~---~i~~~~~d~~~~~~~~~ 130 (291)
.+++.+...++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.+++++..+++. +++++.+|+.+....++
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~ 292 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR 292 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTC
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCC
Confidence 446666666778999999999999999999998899999999999999999999998863 58899999988543478
Q ss_pred ccEEEEcccccccc-----cHHHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|+++.++++.. ....+++.+.++|+|||.+++....
T Consensus 293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 99999999987532 2346899999999999999997543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=138.12 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC------CeEEEEccc------cCCc--cC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ------NVEIIVADI------STFE--ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~------~i~~~~~d~------~~~~--~~ 128 (291)
++.+|||||||+|..+..++... +.+|+|+|+|+.+++.|+++....+.. ++++.+.|+ .+++ .+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 57899999999998766665542 579999999999999999988776542 267888887 2221 22
Q ss_pred -CCccEEEEccccccc---ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 129 -ASYDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
++||+|+|..+++++ .+...+++++.++|||||++++.+++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~ 174 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDK 174 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 789999999999875 46689999999999999999999887543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-16 Score=137.52 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~ 129 (291)
....+++.++..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++++...+++ +++++.+|+.+.+.+.
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 256 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 256 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC
Confidence 345667777778889999999999999999999999899999999 99999999999888774 5999999998875443
Q ss_pred CccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 130 SYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+|+|++..+++++++ ...+++++.++|+|||++++.++..+
T Consensus 257 -~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 257 -ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp -CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred -CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence 499999999999976 78899999999999999988776543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=139.58 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-------HHhCC--CCeE
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL--QNVE 116 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~-------~~~~~--~~i~ 116 (291)
+.....+..+++.+.+.++.+|||||||+|.++..++...+..+|+|||+++.+++.|+++. +..++ ++++
T Consensus 156 Et~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVe 235 (438)
T 3uwp_A 156 ETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 235 (438)
T ss_dssp GTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEE
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence 33456677788888899999999999999999999998875456999999999999998754 33454 4799
Q ss_pred EEEccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 117 IIVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 117 ~~~~d~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++++|+.+.+.. ..+|+|+++.++ +.++....|.++.+.|||||+|++...
T Consensus 236 fi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 236 LERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp EEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred EEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 999999987653 479999998776 457888899999999999999988644
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=137.22 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CCCCeEEEEccccCCc----c---
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------ELQNVEIIVADISTFE----M--- 127 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~i~~~~~d~~~~~----~--- 127 (291)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.... +..++.++++|+.+.+ .
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36789999999999999999874 4789999999999999999988764 3347999999998865 3
Q ss_pred CCCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 128 EASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++||+|+++.+++++ ++...+++++.++|+|||.+++.+++.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 2589999999999887 445789999999999999999998865
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=126.46 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=97.1
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-
Q 022810 51 MLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM- 127 (291)
Q Consensus 51 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~- 127 (291)
..+.+++.+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++ ++++++++|+.+...
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 109 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ 109 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH
Confidence 3444445442 357889999999999999998875 357999999999999999999998887 479999999987432
Q ss_pred ----CCCccEEEEcccccccccHHHHHHHH--HhccccCeeEEEEeeccCCc
Q 022810 128 ----EASYDRIYSIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 128 ----~~~~D~v~~~~~l~~~~~~~~~l~~~--~~~L~pgG~l~i~~~~~~~~ 173 (291)
.++||+|+++.+++ ..+....++.+ .++|+|||++++..+.....
T Consensus 110 ~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~ 160 (187)
T 2fhp_A 110 FYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTVKL 160 (187)
T ss_dssp HHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred HHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcccc
Confidence 37899999998854 45567777777 88899999999988766543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=134.00 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=91.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccEEEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~D~v~~ 136 (291)
..++.+|||||||+|..+..++..+|+.+|+++|+|+.+++.+++++...++++++++++|++++.. .++||+|++
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 3568899999999999999999998899999999999999999999999998789999999988654 278999999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+ .+...+++.+.++|||||++++..
T Consensus 158 ~a~----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RAV----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ESS----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCc----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 753 567889999999999999988754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=133.90 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=93.6
Q ss_pred HHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc---CCC
Q 022810 56 CERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EAS 130 (291)
Q Consensus 56 ~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~---~~~ 130 (291)
...+... ++.+|||+|||+|..+..++++.+ .+|+|+|+++.+++.|++++..+++. +++++++|+.+... .++
T Consensus 41 ~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 41 AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp HHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred HHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence 3445666 789999999999999999998853 49999999999999999999998884 69999999998753 378
Q ss_pred ccEEEEccccccc--------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 131 YDRIYSIEMFEHM--------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~v~~~~~l~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
||+|++++++... .+...+++.+.++|+|||++++..+
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 9999999876543 2356799999999999999998653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-17 Score=139.06 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=85.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--------------------------
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL-------------------------- 112 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~-------------------------- 112 (291)
+..++.+|||||||+|.++..++.. +. +|+|+|+|+.+++.|+++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4557889999999999888777665 44 799999999999999987654310
Q ss_pred ---CCeE-EEEccccCC-cc----CCCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEee
Q 022810 113 ---QNVE-IIVADISTF-EM----EASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 ---~~i~-~~~~d~~~~-~~----~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++. ++++|+.+. +. .++||+|+++.+++++ ++...+++++.++|||||.|++...
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1243 889999874 21 2689999999999886 5667899999999999999999764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=127.07 Aligned_cols=115 Identities=25% Similarity=0.280 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
.....+++.+...++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.+++++...+.+++.++.+|+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 143 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP 143 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC
Confidence 345566677778889999999999999999999886 448999999999999999999988888789999999865433
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++||+|++..+++++. +.+.+.|+|||++++.....
T Consensus 144 ~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 37899999999998886 47889999999999987654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=140.12 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 022810 46 DAEKAMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~ 123 (291)
.....+++.+...+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++..+++ +++++++|+.
T Consensus 214 ~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~ 290 (381)
T 3dmg_A 214 PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVD 290 (381)
T ss_dssp HHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTT
T ss_pred HHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchh
Confidence 333445555555442 346789999999999999999987 78999999999999999999998887 5999999999
Q ss_pred CCccC-CCccEEEEcccccc-----cccHHHHHHHHHhccccCeeEEEEeec
Q 022810 124 TFEME-ASYDRIYSIEMFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 124 ~~~~~-~~~D~v~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+...+ ++||+|+++.++++ ..+...+++++.++|+|||.+++....
T Consensus 291 ~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 291 EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred hccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 87665 79999999999987 466789999999999999999997543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-17 Score=137.02 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~ 127 (291)
...+.+.+.+ ..+|.+|||||||+|..+..+++.. ..++++||+|+.+++.|+++....+. ++.++.+|+.+.. .
T Consensus 48 ~~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~ 124 (236)
T 3orh_A 48 PYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTL 124 (236)
T ss_dssp HHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGS
T ss_pred HHHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccc
Confidence 3334444433 3578899999999999999998765 46899999999999999998877665 7889999987653 2
Q ss_pred C-CCccEEEE-----cccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 E-ASYDRIYS-----IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~v~~-----~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+ ++||.|+. ...+++..+...+++++.++|||||+|.+.
T Consensus 125 ~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 3 78999975 345667788999999999999999998763
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=126.00 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--C---CCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E---ASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~---~~~D~v~~~ 137 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++++++|+.+... + ++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 6789999999999999999987 45699999999999999999998887 89999999987422 1 379999999
Q ss_pred ccccccccHHHHHHHHH--hccccCeeEEEEeeccCC
Q 022810 138 EMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~~ 172 (291)
.+++ .+....++.+. ++|+|||.+++.++....
T Consensus 118 ~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 118 PPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp CCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred CCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 8875 55566777777 999999999998876544
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-16 Score=137.96 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=99.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~ 131 (291)
..+++.+...++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++++...++. +++++.+|+.+ +.+..|
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 249 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTA 249 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCE
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCCC
Confidence 3455566677889999999999999999999998899999999 99999999999888874 79999999976 334459
Q ss_pred cEEEEcccccccccHH--HHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|++..+++++++.. .+++++.++|+|||++++.++
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999999997664 899999999999999998776
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-16 Score=128.60 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEcc
Q 022810 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVAD 121 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d 121 (291)
.......+..++...+..++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|+++++..++. +++++++|
T Consensus 38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd 117 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR 117 (221)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC
T ss_pred CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC
Confidence 344455666676666555566999999999999999999864 789999999999999999999998885 79999999
Q ss_pred ccCCc--c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 122 ISTFE--M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 122 ~~~~~--~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+.+.. . .++||+|++.... .+...+++.+.++|+|||++++...
T Consensus 118 a~~~l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 118 PLDVMSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HHHHGGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHHHHHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 87753 2 3789999997643 5667899999999999999998543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-16 Score=126.59 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.++++... .+++.++++|+.+++.+ ++||+|+++.++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcch
Confidence 5788999999999999999998742 3899999999999999987653 24799999999987655 789999999888
Q ss_pred cccc---------------cHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 141 EHMK---------------NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~---------------~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+++. +...+++++.++|+|||.+++.++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 6553 668899999999999999999887653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-16 Score=137.55 Aligned_cols=108 Identities=13% Similarity=0.215 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cCCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--MEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~D~v~~~~ 138 (291)
.++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++++...++ ++++++.+|+.+.. .+++||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence 4568999999999999999999999999999999 9999999999887776 57999999998863 447899999999
Q ss_pred cccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022810 139 MFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++|++++. ..+++++++.|+|||++++.++..
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLW 290 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence 99988654 578999999999999999977644
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-17 Score=134.95 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
..+++.+++.+.. .++.+|||+|||+|..+..+++..|+.+++|+|+|+.+++.+++++...+. +++++++|+.+...
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~ 93 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLI 93 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhh
Confidence 4556666666655 678899999999999999999998888999999999999999999988777 78999999987433
Q ss_pred C-----CCccEEEEcccccccccH--------------------------HHHHHHHHhccccCee-EEEEe
Q 022810 128 E-----ASYDRIYSIEMFEHMKNY--------------------------QNLLKKISKWMKEDTL-LFVHH 167 (291)
Q Consensus 128 ~-----~~~D~v~~~~~l~~~~~~--------------------------~~~l~~~~~~L~pgG~-l~i~~ 167 (291)
. ++||+|+++.+++...+. ..+++++.++|||||+ +++..
T Consensus 94 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 94 ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3 789999998776543221 6788899999999999 55543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-16 Score=126.85 Aligned_cols=106 Identities=19% Similarity=0.127 Sum_probs=84.7
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----ccCCCccEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~----~~~~~~D~v 134 (291)
+.+.++.+|||+|||+|..+..+++..++.+|+|+|+|+.+++.+.+.++.. .++.++.+|+... +..++||+|
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V 130 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLI 130 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEE
Confidence 4567889999999999999999999876579999999999988777766543 3788999998774 233789999
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++.. ...+...+++++.++|||||.+++...
T Consensus 131 ~~~~~--~~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 131 YQDIA--QKNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp EECCC--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecc--ChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99732 222344568999999999999999753
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-16 Score=129.30 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-C
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-E 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~ 128 (291)
.....+++.+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++....+ +++++.+|+.+... .
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccC
Confidence 44566777777888999999999999999999988 5899999999999999999887665 79999999987332 3
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++||+|++..+++++. ..+.++|+|||++++..+..
T Consensus 133 ~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred CCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 7899999999998886 36889999999999987654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=141.21 Aligned_cols=115 Identities=21% Similarity=0.334 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~ 130 (291)
.+.+.......++.+|||||||+|.++..+++.. ..+|+|+|+| .+++.|+++++.+++. +++++++|+.++..+++
T Consensus 52 ~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 129 (376)
T 3r0q_C 52 FNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEK 129 (376)
T ss_dssp HHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSC
T ss_pred HHHHHhccccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCc
Confidence 3444455566788999999999999999999872 3499999999 9999999999998884 59999999999877689
Q ss_pred ccEEEEccccccc---ccHHHHHHHHHhccccCeeEEEEee
Q 022810 131 YDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
||+|++..+.+.+ .....+++.+.++|||||++++...
T Consensus 130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 9999997755555 5678899999999999999977443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=128.32 Aligned_cols=107 Identities=15% Similarity=0.269 Sum_probs=90.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-ccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~~~-~~~D~v~~~~~l 140 (291)
++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++...++++++++++|+.+. +.. ++||+|+++.++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 57899999999999999887763 359999999999999999999998877899999998874 323 689999999885
Q ss_pred cccccHHHHHHHHHh--ccccCeeEEEEeeccC
Q 022810 141 EHMKNYQNLLKKISK--WMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~~ 171 (291)
+ ......+++.+.+ +|+|||++++......
T Consensus 133 ~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 133 R-RGLLEETINLLEDNGWLADEALIYVESEVEN 164 (202)
T ss_dssp S-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred C-CCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence 4 5667788888865 5999999999876543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=130.30 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=98.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~~ 129 (291)
...++..+...++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|+++++..++++ ++++.+|+.+....+
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 345667778889999999999999999999998 678999999999999999999999988854 999999998764447
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|+++ .++...+++++.++|+|||.+++..++.
T Consensus 162 ~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 162 NVDHVILD-----LPQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp SEEEEEEC-----SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred CcCEEEEC-----CCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 89999984 3566789999999999999999876543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=130.59 Aligned_cols=104 Identities=15% Similarity=0.253 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc---CCCccEEEEc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EASYDRIYSI 137 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~---~~~~D~v~~~ 137 (291)
.++.+|||||||+|..+..+++..|+.+|+++|+++.+++.|++++...++. +++++.+|+.+... .++||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4678999999999999999998777899999999999999999999998884 89999999987543 4789999987
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. ..+...+++.+.++|+|||++++...
T Consensus 150 ~~---~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 AA---KAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp TT---SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred Cc---HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 54 35678899999999999999988543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=121.73 Aligned_cols=112 Identities=16% Similarity=0.276 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
.....+++.+...++.+|||+|||+|.++..+++ ++.+++++|+++.+++.+++++...++++++++++|+.+ ..+
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~ 98 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDK 98 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGG
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccC
Confidence 3445566666777889999999999999999998 589999999999999999999998888789999999987 334
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++||+|+++.+ .+...+++.+.++ |||.+++..+..
T Consensus 99 ~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 99 LEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp CCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 78999999988 6778899999998 999999987543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=146.85 Aligned_cols=121 Identities=22% Similarity=0.229 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHh------CCCCeEEEEccc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL------ELQNVEIIVADI 122 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~------~~~~i~~~~~d~ 122 (291)
..++.+++.+...++.+|||||||+|.++..+++.. |..+|+|+|+|+.+++.|++++... +..+++++++|+
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa 787 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI 787 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence 334445555544578899999999999999999885 3479999999999999999876643 446799999999
Q ss_pred cCCccC-CCccEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeeccC
Q 022810 123 STFEME-ASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 123 ~~~~~~-~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.+++.. ++||+|++..+++|+++.. .+++++.++|||| .+++.+++..
T Consensus 788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~e 838 (950)
T 3htx_A 788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYE 838 (950)
T ss_dssp TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence 998776 8999999999999997654 5999999999999 8888877653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-17 Score=147.30 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe--EEEE
Q 022810 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV--EIIV 119 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i--~~~~ 119 (291)
..+........+.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +.+.. .+..
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~ 159 (416)
T 4e2x_A 86 SVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEK 159 (416)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeech
Confidence 3466666777888888888888999999999999999999987 77999999999999888765 33211 1223
Q ss_pred ccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 120 ADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 120 ~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.+...++.+ ++||+|++..+++|++++..+++++.++|||||++++..+..
T Consensus 160 ~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 211 (416)
T 4e2x_A 160 ATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYL 211 (416)
T ss_dssp HHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 444444444 899999999999999999999999999999999999987754
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-16 Score=136.55 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=100.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.++..+ .+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+ +.+++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 233 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSN 233 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSS
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCC
Confidence 455666666666 8999999999999999999999999999999 9999999998877665 479999999987 44578
Q ss_pred ccEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|++..+++++++.. .+++++++.|+|||++++.+...
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 99999999999886655 89999999999999999987654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=132.70 Aligned_cols=114 Identities=13% Similarity=0.229 Sum_probs=95.0
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---hCCC-CeEEEEccccCCc-----
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LELQ-NVEIIVADISTFE----- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~---~~~~-~i~~~~~d~~~~~----- 126 (291)
...+...++.+|||+|||+|.++..++++.|+.+|+++|+++.+++.|++++.. +++. +++++++|+.+..
T Consensus 29 ~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 29 ASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp HHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHH
T ss_pred HHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhh
Confidence 344566678899999999999999999998888999999999999999999987 7774 6999999998872
Q ss_pred --c-CCCccEEEEccccccc------------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 --M-EASYDRIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 --~-~~~~D~v~~~~~l~~~------------------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
. .++||+|++++++... .+...+++.+.++|+|||.+++..+.
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 2 3789999999766432 23678999999999999999886553
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-16 Score=133.46 Aligned_cols=112 Identities=21% Similarity=0.285 Sum_probs=93.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHh-CCCCeEEEEccccCCccCCC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-ELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~-~~~~i~~~~~d~~~~~~~~~ 130 (291)
..++..+...++.+|||+|||+|..+..+++. .|+.+|+++|+++.+++.+++++... +.++++++.+|+.+....++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 35666677888999999999999999999987 67889999999999999999999887 77789999999988433378
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|++ ++++...+++++.++|+|||++++.++.
T Consensus 180 fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 180 YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred ccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999998 4566778999999999999999998764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=135.89 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-----------------CC------------
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-----------------EL------------ 112 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-----------------~~------------ 112 (291)
.++.+|||||||+|..+..++.. ++.+|+|+|+|+.+++.|++++... +.
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 36789999999999955544433 3679999999999999998865321 10
Q ss_pred -CCeEEEEccccC-Ccc-----C-CCccEEEEcccccc----cccHHHHHHHHHhccccCeeEEEEe
Q 022810 113 -QNVEIIVADIST-FEM-----E-ASYDRIYSIEMFEH----MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 -~~i~~~~~d~~~-~~~-----~-~~~D~v~~~~~l~~----~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+.++.+|+.+ .+. + ++||+|+++.++++ ++++..+++++.++|||||+|++..
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 015677889887 432 1 56999999999999 6688999999999999999999964
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=130.11 Aligned_cols=105 Identities=16% Similarity=0.317 Sum_probs=92.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC-c-c--CCCccEEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-E-M--EASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~-~-~--~~~~D~v~ 135 (291)
..++.+|||+|||+|..+..+++..|+.+|+++|+++.+++.|++++...++ +++.++.+|+.+. + . .++||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 3467899999999999999999998889999999999999999999998887 4699999999874 2 1 36899999
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+..+. .+...+++.+.+.|+|||++++.+.
T Consensus 132 ~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 132 IDAAK---GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EEGGG---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred ECCCH---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 98775 4678999999999999999998754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-16 Score=139.87 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHH-------HHHHHHhC--CCCeEEEEc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI-------EEQCRVLE--LQNVEIIVA 120 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a-------~~~~~~~~--~~~i~~~~~ 120 (291)
..+..+++.+.+.++.+|||||||+|.++..+++.++..+|+|+|+++.+++.| ++++...| .++++++++
T Consensus 229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 455667777888899999999999999999999987556899999999999998 88888888 468999988
Q ss_pred cccCC--cc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 121 DISTF--EM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 121 d~~~~--~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|.... +. .++||+|+++.++ +.++....++++.+.|||||.+++..
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 64421 11 2689999998766 45788889999999999999998864
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=129.84 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc--C-----CCcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM--E-----ASYD 132 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~--~-----~~~D 132 (291)
.++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|++++...++. +++++++|+.+... . ++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3578999999999999999998754 789999999999999999999999884 69999999865321 1 5899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|++....++..+...++..+ ++|+|||++++....
T Consensus 137 ~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 999998877776666778887 999999999986554
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=135.23 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=103.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.+...++......++.+|||+|||+|.+++.++... |..+++|+|+++.+++.|+++++..+++++++.++|+.+++.+
T Consensus 190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 344556667777889999999999999999999986 6789999999999999999999999987899999999998765
Q ss_pred -CCccEEEEccccccc--------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 -ASYDRIYSIEMFEHM--------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~--------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..||+|++++++... ..+..+++.+.++|+|||.+++.++..
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 678999999886432 124779999999999999999987654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-16 Score=131.32 Aligned_cols=106 Identities=16% Similarity=0.260 Sum_probs=91.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC------CCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME------ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~------~~~D~v 134 (291)
+.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++. ...+++++++|+.+.+.. ..||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEE
Confidence 4678899999999999999999985 49999999999999998876 223799999999886433 248999
Q ss_pred EEcccccccc--cHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 135 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++..++++++ +...+++++.++|||||++++.++...
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9999999997 889999999999999999988877553
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-16 Score=129.69 Aligned_cols=153 Identities=10% Similarity=0.087 Sum_probs=112.2
Q ss_pred ChHHHHHhhCCCCCcccc---------ccCCCCCCHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCc--chHHHHHH-HH
Q 022810 18 PTSFFKLVLGKYFKYSCC---------YFSDASKTLEDAEKAMLELYCERSRL-EDGHTVLDVGCGW--GSLSLYIA-QK 84 (291)
Q Consensus 18 ~~~~y~~~~~~~~~y~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~--G~~~~~l~-~~ 84 (291)
.+..|++|+|.+-+|... .+. .-..+.......+...++.+.. ....+|||||||+ +.++..++ +.
T Consensus 24 ~aR~yd~~LgGk~n~~~Dr~~~~~~~~~~P-~~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~ 102 (277)
T 3giw_A 24 SARIYDYIIGGKDYYPADKEAGDAMSREWP-ALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSV 102 (277)
T ss_dssp HHHHHHHHTTCSCCCHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHH
T ss_pred cchhheeecCCccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHH
Confidence 368999999988887431 111 1112334445566666665542 3447899999997 43445444 45
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------CCCcc-----EEEEccccccccc---HHHH
Q 022810 85 YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------EASYD-----RIYSIEMFEHMKN---YQNL 149 (291)
Q Consensus 85 ~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~D-----~v~~~~~l~~~~~---~~~~ 149 (291)
.|+++|+++|.|+.|++.|++++...+..+++++++|+.+... .+.|| .|+++.+|||+++ +..+
T Consensus 103 ~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~ 182 (277)
T 3giw_A 103 APESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGI 182 (277)
T ss_dssp CTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHH
T ss_pred CCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHH
Confidence 7899999999999999999988765433479999999988521 14455 6889999999977 5789
Q ss_pred HHHHHhccccCeeEEEEeeccC
Q 022810 150 LKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 150 l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++++.+.|+|||+|++...+..
T Consensus 183 l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 183 VRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp HHHHHTTSCTTCEEEEEEECCT
T ss_pred HHHHHHhCCCCcEEEEEeccCC
Confidence 9999999999999999887654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-16 Score=129.47 Aligned_cols=108 Identities=15% Similarity=0.306 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH------hCCCCeEEEEccccC-Cc--cC-CC
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV------LELQNVEIIVADIST-FE--ME-AS 130 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~------~~~~~i~~~~~d~~~-~~--~~-~~ 130 (291)
..++.+|||||||+|.++..+++.+|+..|+|+|+|+.+++.|++++.. .+.+++.++++|+.+ ++ .+ ++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3466799999999999999999998889999999999999999988764 345689999999987 43 33 78
Q ss_pred ccEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 131 YDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
||.|++..+-.+... ...+++.+.++|||||.|++.+.
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 999998654433211 14799999999999999998764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=130.87 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH--CCCCEEEEEcCCHHHHHHHHHHHHHh---CCC-C--------
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVL---ELQ-N-------- 114 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~p~~~v~~vD~s~~~~~~a~~~~~~~---~~~-~-------- 114 (291)
..++..+++.+...++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.|++++... ++. +
T Consensus 37 ~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1o9g_A 37 TEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS 116 (250)
T ss_dssp HHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence 345566666555456789999999999999999987 66789999999999999999887655 332 1
Q ss_pred -----------------eE-------------EEEccccCCcc-----C-CCccEEEEcccccccc---------cHHHH
Q 022810 115 -----------------VE-------------IIVADISTFEM-----E-ASYDRIYSIEMFEHMK---------NYQNL 149 (291)
Q Consensus 115 -----------------i~-------------~~~~d~~~~~~-----~-~~~D~v~~~~~l~~~~---------~~~~~ 149 (291)
++ ++++|+.+... . .+||+|+++.++.... ....+
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~ 196 (250)
T 1o9g_A 117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGL 196 (250)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHH
T ss_pred hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHH
Confidence 66 99999987542 3 5899999998776543 35689
Q ss_pred HHHHHhccccCeeEEEE
Q 022810 150 LKKISKWMKEDTLLFVH 166 (291)
Q Consensus 150 l~~~~~~L~pgG~l~i~ 166 (291)
++++.++|+|||++++.
T Consensus 197 l~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 197 LRSLASALPAHAVIAVT 213 (250)
T ss_dssp HHHHHHHSCTTCEEEEE
T ss_pred HHHHHHhcCCCcEEEEe
Confidence 99999999999999984
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.9e-16 Score=128.57 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=87.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----CccCCCc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FEMEASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~----~~~~~~~ 131 (291)
++.+.+.++.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.++++++.. +++.++.+|+.+ .+..++|
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCE
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccE
Confidence 4555667889999999999999999999876689999999999999999887554 589999999987 4444789
Q ss_pred cEEEEcccccccccH---HHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNY---QNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+. ++++. ..+++++.+.|+|||.+++.
T Consensus 145 D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 99993 33344 77899999999999999986
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=135.29 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=97.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+.+.+++
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 345566666678899999999999999999876 356999999996 88999999998888 589999999998876678
Q ss_pred ccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|++..+++++ ++....+..+.++|||||.+++...+
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD 157 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 9999999888776 45678888999999999999875443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-16 Score=132.76 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~ 129 (291)
+++.+++.+...++.+|||+|||+|.++..+++. |+.+|+|+|+|+.+++.|++++...+++ +++++++|+.+.. ++
T Consensus 111 lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-~~ 188 (284)
T 1nv8_A 111 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-KE 188 (284)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-GG
T ss_pred HHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-cc
Confidence 3444444443335679999999999999999999 8999999999999999999999998885 4999999998743 25
Q ss_pred Cc---cEEEEcccccccc-------------------cHHHHHHHHH-hccccCeeEEEEee
Q 022810 130 SY---DRIYSIEMFEHMK-------------------NYQNLLKKIS-KWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~---D~v~~~~~l~~~~-------------------~~~~~l~~~~-~~L~pgG~l~i~~~ 168 (291)
+| |+|++++++.... +...+++++. +.|+|||.+++...
T Consensus 189 ~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 189 KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 78 9999986553221 1126899999 99999999998643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=134.25 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=100.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~ 131 (291)
..+++.+...++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++++...++. +++++.+|+.+ ..+..|
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 250 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRKA 250 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSCE
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCCc
Confidence 3455666777889999999999999999999998899999999 99999999999888874 79999999976 234459
Q ss_pred cEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeec
Q 022810 132 DRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+|++..+++++++. ..+++++.++|+|||++++.++.
T Consensus 251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999999999999765 58999999999999999998765
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=136.69 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=97.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
..+++.+...++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.+++++...++ +++++.+|+.+.. +++||
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV-KGRFD 263 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC-CSCEE
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc-cCCee
Confidence 345555655567799999999999999999998778999999999999999999988877 5788899987754 47899
Q ss_pred EEEEcccccc-----cccHHHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+++.++++ ..+...+++++.++|+|||.+++....
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9999999975 355688999999999999999997654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=127.94 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=97.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHh-CCCCeEEEEccccCCccC-C
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-ELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~-~~~~i~~~~~d~~~~~~~-~ 129 (291)
..++..+.+.++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.+++++... +.+++++..+|+.+.+.+ +
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence 45667778889999999999999999999988 56789999999999999999999887 766899999999887444 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|+++ .++...+++++.++|+|||.+++..++.
T Consensus 166 ~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 166 AYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp CEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred CcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 89999984 3566789999999999999999977643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=126.77 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=90.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+.++++++++|+.+.. +++||+|+++.++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-CCCceEEEECCcH
Confidence 357889999999999999998865 45699999999999999999999888866999999998753 4789999999887
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++ ...+++++.++|+|||++++..+..
T Consensus 136 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 136 EI---LLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp HH---HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred HH---HHHHHHHHHHhcCCCCEEEEEecCc
Confidence 54 4788999999999999999976543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=126.57 Aligned_cols=115 Identities=21% Similarity=0.201 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
.....+++.+...++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.+++++...++++++++.+|+......
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 3445566667788899999999999999999999865 89999999999999999999988887899999997332222
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.+||+|++..+++++.+ .+.+.|+|||++++..+...
T Consensus 157 ~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECSSS
T ss_pred CCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEecCC
Confidence 56999999999987753 67899999999999877543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=129.52 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=87.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. .+ ++++|+.+++.+ ++||+|++..++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~ 125 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPSGAFEAVLALGDVL 125 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCCCCEEEEEEcchhh
Confidence 7789999999999999999987 7899999999999999887643 12 789999887765 7899999988666
Q ss_pred cc-ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 142 HM-KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++ ++...+++++.++|+|||.+++..++.
T Consensus 126 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 126 SYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred hccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 65 789999999999999999999988764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=121.85 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~- 128 (291)
....+++.+...++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.+++++...+. +++.+.++|+.+....
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHh--cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence 3445566667788999999999999999999987 48999999999999999999988887 6899999998773222
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++||+|++..+++ +...+++.+.++|+|||.+++..+.
T Consensus 99 ~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 99 PDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp CCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred CCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecC
Confidence 6899999988764 4588999999999999999987664
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=133.28 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=93.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~ 130 (291)
+.+.+.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+++.+ ++
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 44445455678899999999999999999987 245999999996 99999999998888 6899999999998776 79
Q ss_pred ccEEEEccc---ccccccHHHHHHHHHhccccCeeEE
Q 022810 131 YDRIYSIEM---FEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 131 ~D~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
||+|++..+ +.+..+...++..+.++|||||.++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999873 4455678889999999999999987
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-16 Score=131.56 Aligned_cols=108 Identities=13% Similarity=0.162 Sum_probs=89.8
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---------------------------
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--------------------------- 112 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--------------------------- 112 (291)
...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.+++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 445778999999999999999987732 4999999999999999888754320
Q ss_pred --CCe-EEEEccccCCcc--C---CCccEEEEccccc----ccccHHHHHHHHHhccccCeeEEEEee
Q 022810 113 --QNV-EIIVADISTFEM--E---ASYDRIYSIEMFE----HMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 --~~i-~~~~~d~~~~~~--~---~~~D~v~~~~~l~----~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++ .++.+|+.+... + ++||+|++..+++ ++++...+++++.++|||||.+++..+
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 027 899999987543 3 6899999999999 667889999999999999999999774
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=121.37 Aligned_cols=102 Identities=18% Similarity=0.343 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc-c
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-E 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~-~ 138 (291)
+.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++. +++.++++|+.+.+.+ ++||+|+++ .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCCCceeEEEECCc
Confidence 457889999999999999999987 789999999999999988764 3689999999987655 789999998 6
Q ss_pred ccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++++ ++...+++.+.++|+|||.+++..+.
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 117 VMGFLAEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 78777 45688999999999999999997653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-16 Score=130.20 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~ 126 (291)
...+..++.. .++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...++. +++++.+|+.+..
T Consensus 49 ~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 125 (242)
T 3r3h_A 49 AQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125 (242)
T ss_dssp HHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 4444444433 3567999999999999999998875 789999999999999999999998884 8999999997643
Q ss_pred c-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 127 M-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 127 ~-------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
. .++||+|++... ..+...+++.+.++|+|||++++......
T Consensus 126 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 126 HSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp HHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred HHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 2 368999999865 35677899999999999999999765443
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=126.37 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC------CCccE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME------ASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~------~~~D~ 133 (291)
.++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...+++ +++++++|+.+.... ++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4678999999999999999999887 789999999999999999999988884 599999999764221 57999
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++.... +....+++.+.++|+|||++++..+
T Consensus 137 v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 137 IFIDADK---QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEECSCG---GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9988663 4667899999999999999888654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-16 Score=133.87 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=100.5
Q ss_pred CChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCC--CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEc
Q 022810 17 LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 94 (291)
Q Consensus 17 ~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD 94 (291)
+.......+++..+....+.|..... .......++..++..+.. .++.+|||+|||+|.++..++++.|+.+|+|+|
T Consensus 18 l~~~~~~~~~~~~~~~~~~~~~p~~~-~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD 96 (254)
T 2h00_A 18 LTCTLLREDFGLSIDIPLERLIPTVP-LRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATE 96 (254)
T ss_dssp HHHHHHHHHHCCCCCCCTTSCCCCHH-HHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHHcCCeeeecCccccCCCcc-chHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEE
Confidence 34455666677666665554432100 112223444555543332 257799999999999999999887778999999
Q ss_pred CCHHHHHHHHHHHHHhCCC-CeEEEEccccCC---ccC----CCccEEEEcccccccc-c--------------HHHHHH
Q 022810 95 NSKTQKEFIEEQCRVLELQ-NVEIIVADISTF---EME----ASYDRIYSIEMFEHMK-N--------------YQNLLK 151 (291)
Q Consensus 95 ~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~---~~~----~~~D~v~~~~~l~~~~-~--------------~~~~l~ 151 (291)
+|+.+++.|++++...+++ +++++++|+.+. ..+ ++||+|+++++++... + ...++.
T Consensus 97 ~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (254)
T 2h00_A 97 VDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTG 176 (254)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhh
Confidence 9999999999999988885 599999997652 222 4799999998876543 1 124567
Q ss_pred HHHhccccCeeEEE
Q 022810 152 KISKWMKEDTLLFV 165 (291)
Q Consensus 152 ~~~~~L~pgG~l~i 165 (291)
.+.++|||||.+.+
T Consensus 177 ~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 177 GITEIMAEGGELEF 190 (254)
T ss_dssp CTTTTHHHHTHHHH
T ss_pred hHHHHEecCCEEEE
Confidence 88899999998765
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=128.03 Aligned_cols=106 Identities=11% Similarity=0.185 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc----CCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM----EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~D~v~ 135 (291)
.++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...++. +++++.+|+.+... .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 4678999999999999999999887 789999999999999999999998884 79999999876322 14899999
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+... ..+...+++.+.++|||||++++.....
T Consensus 142 ~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 142 IDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp ECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred ECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 9764 4567789999999999999998876543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-16 Score=136.20 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=97.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
..+++.++..+..+|||||||+|..+..+++++|+.+++..|. +.+++.++++....+.++|+++.+|+.+.+. ..+|
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-~~~D 246 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-PEAD 246 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-CCCS
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-CCce
Confidence 4455666677788999999999999999999999999999998 8899999887765555789999999987543 4579
Q ss_pred EEEEcccccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022810 133 RIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|++..++|+++|. ..+|+++++.|+|||+++|.+...
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 99999999999765 578999999999999999877543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=126.62 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=89.3
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~ 131 (291)
+.+.++||.+|||+|||+|.++..+++. .|..+|+|+|+++.+++.+++++.+. +|+..+.+|..... .. +++
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCE
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceE
Confidence 4567899999999999999999999987 47789999999999999998877554 37899999887643 22 789
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|++.. .+..+...++.++.+.|||||.+++..
T Consensus 149 DvVf~d~--~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 149 DGLYADV--AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEECC--CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEec--cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 9998753 344667889999999999999998864
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=128.78 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=94.2
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
.+.++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|+++++.++++++.++++|+.+.+..++||+|+++.+
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence 35678999999999999999999987677999999999999999999999998889999999998732368999999887
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
. +...++..+.+.|+|||++++.+...
T Consensus 196 ~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 196 H----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 5 55678999999999999999877654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=134.05 Aligned_cols=104 Identities=28% Similarity=0.391 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
+.++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++++..+++ +++++++|+++.+.+ ++||+|++..
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 141 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence 457889999999999999999987 35699999999 4999999999998884 599999999998776 8999999977
Q ss_pred ccccc---ccHHHHHHHHHhccccCeeEEEE
Q 022810 139 MFEHM---KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~~~---~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.+.+ .+...++..+.++|||||+++..
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 64443 78899999999999999998753
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-16 Score=130.70 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCC-HHHHHHH---HHHHHHhCCCCeEEEEccccCCccC--CCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS-KTQKEFI---EEQCRVLELQNVEIIVADISTFEME--ASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s-~~~~~~a---~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~ 135 (291)
.++.+|||||||+|.++..+++..|+.+|+|+|+| +.+++.| ++++...+++++.++++|+.+++.. +.+|.|+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 57889999999999999999987788999999999 6666666 7777777777899999999988532 4455555
Q ss_pred Eccccccc-----ccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++.+.... .+...++++++++|||||.+++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 54432211 234578999999999999998843
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-16 Score=127.52 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=84.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~ 142 (291)
+.+|||+|||+|.++..+++. +++|+|+.+++.++++ ++.++++|+.+++.+ ++||+|++..++++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 789999999999999887642 9999999999888765 578999999887765 78999999999999
Q ss_pred cccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+++...+++++.++|+|||.+++..+..
T Consensus 115 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 115 VDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 9999999999999999999999987754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=125.10 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=91.3
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccC-CC
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-AS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~--~~~-~~ 130 (291)
.+++.+. .++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++. ..++.+|+.+. +.+ ++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTC
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCc
Confidence 3444444 57889999999999999999987 589999999999988877542 36889998863 333 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
||+|++..+++|+++...+++++.++|+|||.+++..+...
T Consensus 94 fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp EEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred cCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999887653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=127.40 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHh-C--CCCeEEEEccccCCc
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-E--LQNVEIIVADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~-~--~~~i~~~~~d~~~~~ 126 (291)
....++..+.+.++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|++++... + .++++++.+|+.+.+
T Consensus 87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 3456667778889999999999999999999985 46789999999999999999999887 5 468999999998876
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.+ ++||+|+++ ++++..+++++.++|+|||.+++..++.
T Consensus 167 ~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp CCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred CCCCceeEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 54 789999984 3456689999999999999999987754
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=128.49 Aligned_cols=114 Identities=19% Similarity=0.162 Sum_probs=96.2
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CCC
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~~~ 130 (291)
..+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++++..+++++.++++|+.++.. .++
T Consensus 77 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~ 156 (274)
T 3ajd_A 77 IVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIF 156 (274)
T ss_dssp HHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCC
T ss_pred HHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcccc
Confidence 3456778999999999999999999987656 7999999999999999999999988889999999987654 478
Q ss_pred ccEEEEccccccc------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|+++.+.... .....+++.+.++|||||.+++++.+.
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 9999998554321 345789999999999999999977644
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=130.05 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=91.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
..++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|+++++.++++ +++++++|+.+....++||+|+++.+
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~-~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 35688999999999999999999853 27999999999999999999998885 49999999999876688999999766
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
. +...+++.+.++|+|||.+++.+..+
T Consensus 202 ~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 202 V----RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred h----hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 3 33678889999999999999987754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=134.32 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=93.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.++..++.+|||||||+|..+..+++.+|+.+++++|+ +.++. +++....+. ++++++.+|+.+ +.+ +
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~ 247 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-H 247 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-C
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC-C
Confidence 44566777888889999999999999999999999999999999 44443 222222233 479999999973 334 8
Q ss_pred ccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeeccC
Q 022810 131 YDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
||+|++..++|++++. ..++++++++|||||++++.+...+
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999999999877 6999999999999999999776443
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=126.15 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=90.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-------CCcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-------ASYD 132 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-------~~~D 132 (291)
.++.+|||||||+|..+..+++..| +.+|+++|+++.+++.+++++...++. +++++++|+.+.... ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3577999999999999999999876 789999999999999999999998884 599999999664211 6899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|++... ..+...+++.+.++|+|||++++....
T Consensus 143 ~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 143 LIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9997764 356788999999999999999986543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-15 Score=121.95 Aligned_cols=110 Identities=24% Similarity=0.283 Sum_probs=92.4
Q ss_pred HHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEcc
Q 022810 54 LYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVAD 121 (291)
Q Consensus 54 ~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-----p~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~i~~~~~d 121 (291)
.+++.+ .+.++.+|||||||+|..+..+++.. |..+|+++|+++.+++.|++++...+ .++++++.+|
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 148 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN 148 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence 344444 46788999999999999999999885 34699999999999999999998887 5689999999
Q ss_pred ccCCc----cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 122 ISTFE----ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 122 ~~~~~----~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.+.. .. ++||+|++..+++++ ++.+.+.|+|||++++..+.
T Consensus 149 ~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 149 IYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp GGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred hHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 98754 33 789999999988765 47788999999999998764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=124.55 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=88.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~ 131 (291)
+.+.+.++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.+.++++.. ++++++.+|+.+.. .. ++|
T Consensus 71 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 71 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp SCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCE
T ss_pred heecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcE
Confidence 34567788999999999999999999885 5689999999999988888887765 47999999998732 22 789
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|+++.+ .......++.++.++|||||.+++...
T Consensus 149 D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 149 DVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp EEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 99999765 223335568889999999999999644
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=138.05 Aligned_cols=114 Identities=22% Similarity=0.249 Sum_probs=95.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
.+.+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+++.+++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 445566665667889999999999999999874 467999999998 99999999999888 589999999998766678
Q ss_pred ccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
||+|+++.+++++ ++....+..+.++|+|||.+++..
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999999887766 445667788899999999998644
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=124.13 Aligned_cols=106 Identities=19% Similarity=0.384 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--------CCCCeEEEEccccC-Cc--cC-C
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------ELQNVEIIVADIST-FE--ME-A 129 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~i~~~~~d~~~-~~--~~-~ 129 (291)
.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.+++++... +++++.++++|+.+ ++ .+ +
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4678999999999999999999988889999999999999999998876 67789999999987 33 33 7
Q ss_pred CccEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++|.|+...+-.+... ...+++.+.++|+|||.+++.+
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 8999886543222111 1589999999999999998854
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=126.29 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=96.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
..++..+.+.++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|++++...++ ++++++.+|+.+....++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 45666778888999999999999999999998 5678999999999999999999998887 579999999988633378
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|+++ .++...+++.+.++|+|||.+++..+.
T Consensus 182 ~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 182 VDALFLD-----VPDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp EEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred cCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999985 345678999999999999999997754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=130.84 Aligned_cols=107 Identities=19% Similarity=0.136 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~-----~~~~D~v 134 (291)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++..++++ +++++++|+.++.. .++||+|
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 46789999999999999999986 669999999999999999999999885 49999999987542 3689999
Q ss_pred EEccccc----------ccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFE----------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~----------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+++++.. ...+...+++.+.++|+|||.+++...+.
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 9977632 23467889999999999999988876544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=119.75 Aligned_cols=110 Identities=24% Similarity=0.172 Sum_probs=91.0
Q ss_pred HHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCC
Q 022810 54 LYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTF 125 (291)
Q Consensus 54 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~i~~~~~d~~~~ 125 (291)
.+++.+. ..++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+ .+++.++.+|+...
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 4445554 6788999999999999999999874 44799999999999999999988765 35799999999865
Q ss_pred ccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 126 EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
... ++||+|++..+++++ ++.+.+.|||||++++....
T Consensus 146 ~~~~~~fD~i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 146 YAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred cccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEec
Confidence 443 789999999888665 35788999999999997654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=124.75 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~ 126 (291)
...+..++.. .++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...++ ++++++.+|+.+..
T Consensus 68 ~~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 144 (247)
T 1sui_A 68 GQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL 144 (247)
T ss_dssp HHHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHH
Confidence 3444444443 3567999999999999999999876 78999999999999999999999888 47999999987642
Q ss_pred --c------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 --M------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 --~------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. .++||+|++... ..+...+++.+.++|+|||++++...
T Consensus 145 ~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 145 DEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp HHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred HHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 1 368999999754 35678899999999999999988643
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=131.08 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=93.7
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022810 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.+. ..++.+|||||||+|..+..+++++|..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~- 267 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SVPQ- 267 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCC-
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CCCC-
Confidence 345666665 66788999999999999999999999899999999 888876653 2479999999987 4444
Q ss_pred ccEEEEcccccccccHH--HHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|++..++|++++.. .++++++++|+|||++++.++..
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 309 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 99999999999998777 99999999999999999987654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-15 Score=124.04 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++..++++ +++..+|+.+....++||+|+++...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCcH
Confidence 467889999999999999999887 459999999999999999999988875 89999998774223789999998665
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+ ....+++.+.++|+|||++++..+.
T Consensus 195 ~---~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 195 E---LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp H---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred H---HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 4 3568899999999999999997653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=123.89 Aligned_cols=118 Identities=12% Similarity=0.178 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcC-CHHHHHHHHHHH-----HHhCCC-----CeEE
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN-SKTQKEFIEEQC-----RVLELQ-----NVEI 117 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~-s~~~~~~a~~~~-----~~~~~~-----~i~~ 117 (291)
..+.+.+.......++.+|||||||+|.++..+++.. ..+|+++|+ |+.+++.+++++ ...++. ++++
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 4455555554444678899999999999999988762 349999999 899999999998 555543 6888
Q ss_pred EEccccCCc-------cCCCccEEEEcccccccccHHHHHHHHHhccc---c--CeeEEEEe
Q 022810 118 IVADISTFE-------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMK---E--DTLLFVHH 167 (291)
Q Consensus 118 ~~~d~~~~~-------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~---p--gG~l~i~~ 167 (291)
...|+.+.. ..++||+|++..++++.++...+++.+.++|+ | ||.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 877765421 13689999999999999999999999999999 9 99887753
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-15 Score=127.57 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=94.1
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccE
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDR 133 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~ 133 (291)
...+...++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.+++++...++++++++++|+.+++. .++||+
T Consensus 111 ~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 111 PVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 3445678899999999999999999998864 47999999999999999999999998789999999988754 378999
Q ss_pred EEEcccc------ccccc----------------HHHHHHHHHhccccCeeEEEEeec
Q 022810 134 IYSIEMF------EHMKN----------------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 v~~~~~l------~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+++.+. ...++ ...+++++.++|||||++++++.+
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 9996542 21111 258999999999999999987654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=120.98 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=86.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCC
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEAS 130 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 130 (291)
++.+.+.++.+|||+|||+|.++..+++.. |+.+|+++|+|+.+++.++++++.. ++++++++|+.+.. .+++
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~ 143 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCC
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCC
Confidence 334446788999999999999999999874 4589999999999999998887654 48999999998732 2368
Q ss_pred ccEEEEcccccccccH-HHHHHHHHhccccCeeEEEE
Q 022810 131 YDRIYSIEMFEHMKNY-QNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~-~~~l~~~~~~L~pgG~l~i~ 166 (291)
||+|++..+ .++. ..++.++.++|||||.+++.
T Consensus 144 ~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 144 VDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 999998765 2333 34599999999999999887
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=120.05 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=95.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-cCCC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-MEAS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~-~~~~ 130 (291)
..++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++....++ +++++..+|+.+.. ..++
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 45566677788999999999999999999988 78999999999999999999988887 58999999998865 3378
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|+++ .++...+++.+.++|+|||.+++..+..
T Consensus 159 ~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 159 FHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp BSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred ccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9999984 3456688999999999999999987643
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=130.28 Aligned_cols=102 Identities=31% Similarity=0.402 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccc-
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEM- 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~- 139 (291)
.++.+|||||||+|.++..+++.. ..+|++||.|+ +++.|+++++.+++ ++|+++.+|++++..++++|+|++..+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~ 159 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCB
T ss_pred cCCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccc
Confidence 468899999999999998888763 45899999986 88999999999998 579999999999888889999999543
Q ss_pred --ccccccHHHHHHHHHhccccCeeEEE
Q 022810 140 --FEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 140 --l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+.+-.....++....++|+|||.++-
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccchhhhHHHHHHhhCCCCceECC
Confidence 33335678899999999999999764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=127.60 Aligned_cols=106 Identities=23% Similarity=0.325 Sum_probs=89.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~ 135 (291)
.+...++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++ ++++++.+|+.+.+.+ ++||+|+
T Consensus 33 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 110 (328)
T 1g6q_1 33 NKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIII 110 (328)
T ss_dssp HHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred hHhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEE
Confidence 334457889999999999999999976 34599999999 599999999998888 4699999999998766 8899999
Q ss_pred Ecccccc---cccHHHHHHHHHhccccCeeEEE
Q 022810 136 SIEMFEH---MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 136 ~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+..+.+. ......++..+.++|+|||.++.
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 9865443 35678899999999999999874
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=120.99 Aligned_cols=112 Identities=18% Similarity=0.118 Sum_probs=91.9
Q ss_pred HHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHCC------CCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEE
Q 022810 52 LELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYS------NCKITGICNSKTQKEFIEEQCRVLE-----LQNVEII 118 (291)
Q Consensus 52 ~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~p------~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~i~~~ 118 (291)
...+++.+ .+.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...+ .++++++
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 150 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 34455555 367889999999999999999998653 2599999999999999999988765 4589999
Q ss_pred EccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 119 VADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 119 ~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.+|+.+.... ++||+|++..+++++. +.+.+.|||||++++....
T Consensus 151 ~~d~~~~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 151 EGDGRKGYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred ECCcccCCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 9999873333 7899999999988764 6789999999999997654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-15 Score=121.45 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCC-cc-CCCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF-EM-EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~-~~-~~~~D~v~~~~ 138 (291)
++.+|||||||+|..+..+++..| +.+|+++|+|+.+++.|++++...++. +++++.+|+.+. +. ++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 567999999999999999998876 789999999999999999999888873 699999999764 22 26 99999974
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ..+...+++.+.++|+|||++++...
T Consensus 135 ~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 D---VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 3 35778999999999999999988654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=125.97 Aligned_cols=104 Identities=15% Similarity=0.209 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCcch----HHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHHHH-----------------------hC
Q 022810 63 DGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRV-----------------------LE 111 (291)
Q Consensus 63 ~~~~vLDiGcG~G~----~~~~l~~~~p----~~~v~~vD~s~~~~~~a~~~~~~-----------------------~~ 111 (291)
++.+|||+|||+|. ++..+++..+ +.+|+|+|+|+.+++.|+++... .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5666776643 46999999999999999986410 01
Q ss_pred -------C-CCeEEEEccccCCccC--CCccEEEEcccccccccH--HHHHHHHHhccccCeeEEEE
Q 022810 112 -------L-QNVEIIVADISTFEME--ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 112 -------~-~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~ 166 (291)
+ ++|.|.++|+.+.+.+ ++||+|+|.+++.++++. .++++++++.|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 0 2689999999885433 789999999999999544 78999999999999999883
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=129.03 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=91.4
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022810 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.+. ..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p~~ 262 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFD-GVPKG 262 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC-CCCCC
Confidence 344555555 66788999999999999999999999999999999 887766643 2479999999987 44444
Q ss_pred ccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeeccC
Q 022810 131 YDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
|+|++..++|++++. ..++++++++|+|||++++.+...+
T Consensus 263 -D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 263 -DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp -SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred -CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 999999999988654 5799999999999999999876543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=117.27 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. .++++++++|+.+....++||+|+++.+++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES---------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT---------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc---------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 45679999999999999999987 5 99999999998876 237899999998843338999999999988
Q ss_pred cccc---------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 142 HMKN---------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~~~---------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+.++ ...+++++.+.| |||.+++..+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~ 126 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA 126 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence 6543 357888888888 999999977544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-15 Score=122.51 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc-----------
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM----------- 127 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~----------- 127 (291)
..++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...+.. +++++.+|+.+...
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34678999999999999999999876 689999999999999999999988874 59999999866311
Q ss_pred ------C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 ------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ------~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ++||+|++.... ++...+++.+.+.|+|||++++...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 2 679999998543 5667899999999999999998654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-15 Score=137.38 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~~~ 138 (291)
..+.+|||||||+|.++..|+++ |++|+|||+++.+++.|+..+.+.+.-++++.+++++++. .. ++||+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999988 8999999999999999999998877547999999999873 22 7899999999
Q ss_pred cccccccHHHH--HHHHHhccccCeeEEEEeecc
Q 022810 139 MFEHMKNYQNL--LKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~~~~~~--l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+++|++++..+ +..+.+.|+++|..++..+..
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 99999876543 446677788988877655543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=115.26 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=87.5
Q ss_pred HHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----
Q 022810 53 ELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 126 (291)
Q Consensus 53 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---- 126 (291)
..+++.+. ..++.+|||+|||+|..+..+++.+ ++.+++++|+++ +++. .+++++.+|+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~ 79 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHH
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhh
Confidence 34445444 5678899999999999999999884 568999999999 6432 47999999998865
Q ss_pred ----cC-CCccEEEEcccccccccH-----------HHHHHHHHhccccCeeEEEEeecc
Q 022810 127 ----ME-ASYDRIYSIEMFEHMKNY-----------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ----~~-~~~D~v~~~~~l~~~~~~-----------~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.+ ++||+|+++.++++..+. ..+++.+.++|+|||.+++..+..
T Consensus 80 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 44 789999999988776554 689999999999999999977654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=120.69 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~ 126 (291)
...+..++.. .++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...++. +++++.+|+.+..
T Consensus 59 ~~~l~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 135 (237)
T 3c3y_A 59 GQLMSFVLKL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLAL 135 (237)
T ss_dssp HHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3444554443 3567999999999999999999876 789999999999999999999998884 6999999987642
Q ss_pred --c------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 --M------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 --~------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. .++||+|++... ..+...+++.+.++|+|||++++...
T Consensus 136 ~~l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 136 DNLLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp HHHHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 1 368999998754 35678899999999999999988644
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=127.06 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=92.5
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022810 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.+. ..+..+|||||||+|..+..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~p~~ 260 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK-EVPSG 260 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC-CCCCC
Confidence 445666665 67788999999999999999999999999999999 887766553 2489999999987 54544
Q ss_pred ccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 131 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
|+|++..++|++++ ...+|+++++.|+|||++++.+...+
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99999999998854 56899999999999999999876543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=121.01 Aligned_cols=104 Identities=12% Similarity=0.184 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc----c-C--CCccE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE----M-E--ASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~----~-~--~~~D~ 133 (291)
++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...++ ++++++.+|+.+.. . . ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 567999999999999999998876 67999999999999999999998888 46999999976531 1 1 67999
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|++... ..++..+++.+.++|+|||++++....
T Consensus 152 V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 998765 356788999999999999999986543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=121.81 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.++++. .++.+..+|+.+++.+ ++||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~ 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence 5678999999999999999998877889999999999999887653 3688999999887765 789999987653
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
..++++.++|||||.+++.++...
T Consensus 159 -------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 159 -------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp -------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred -------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 357899999999999999888654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=120.05 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-------CCcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-------ASYD 132 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-------~~~D 132 (291)
.++.+|||+|||+|..+..+++..+ +.+|+++|+++.+++.|++++...++ ++++++.+|+.+.... ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4678999999999999999998876 68999999999999999999998887 5799999998664211 5799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+|++... ..+...+++.+.++|+|||++++...
T Consensus 148 ~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD---KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC---STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9999765 35667899999999999999988654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=125.64 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=90.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhC-----------CCCeEEEE
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-----------LQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~-----------~~~i~~~~ 119 (291)
...++..+.+.++.+|||+|||+|.++..+++. .|..+|+++|+++.+++.|++++...+ .++++++.
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 445566667889999999999999999999987 455899999999999999999988642 24799999
Q ss_pred ccccCCc--cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 120 ADISTFE--ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 120 ~d~~~~~--~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+.+.. .+ ++||+|+++.. ++..+++.+.++|+|||.+++..++
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9998863 23 67999998643 3445899999999999999987653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=128.11 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=88.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
...++.+|||||||+|..+..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p-~~D~v~~~~~ 255 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SIP-NADAVLLKYI 255 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CCC-CCSEEEEESC
T ss_pred ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CCC-CccEEEeehh
Confidence 345678999999999999999999999999999999 998877654 2369999999976 333 4999999999
Q ss_pred ccccccHH--HHHHHHHhcccc---CeeEEEEeecc
Q 022810 140 FEHMKNYQ--NLLKKISKWMKE---DTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~ 170 (291)
+|++++.. .++++++++||| ||++++.++..
T Consensus 256 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 256 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 99998777 999999999999 99999987654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=117.48 Aligned_cols=105 Identities=12% Similarity=0.035 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
+++.+|||||||+|.+++.+++..|..+|+++|+++.+++.|+++++.+++. ++++..+|..+...+ .+||+|+..++
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4678999999999999999999877779999999999999999999999985 699999999653333 37999987665
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
-. .-...++....+.|+|+|+++++..
T Consensus 94 Gg--~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 94 GG--RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp CH--HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred Ch--HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 32 2257789999999999999888654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.9e-14 Score=115.11 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=82.5
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDR 133 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~D~ 133 (291)
+.++++.+|||+|||+|..+..+++.. |..+|+++|+++.+++.+.+.++.. .++.++++|+..... .++||+
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEE
Confidence 447899999999999999999999874 5679999999999986665555443 489999999976431 268999
Q ss_pred EEEcccccccccHHHHH-HHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHMKNYQNLL-KKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l-~~~~~~L~pgG~l~i~~~ 168 (291)
|+++.+. ++....+ ..+.+.|||||.|++...
T Consensus 150 I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 150 LYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp EEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 9998654 4555544 456669999999998743
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=115.61 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=82.2
Q ss_pred HHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----
Q 022810 54 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 126 (291)
Q Consensus 54 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p--~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---- 126 (291)
.+.+... +.++.+|||+|||+|..+..++++.+ +.+|+|+|+|+.. ..++++++++|+.+..
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~ 80 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNI 80 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhh
Confidence 3444444 46788999999999999999999886 6899999999841 2347899999998765
Q ss_pred ---------------------cC-CCccEEEEccccccc----ccH-------HHHHHHHHhccccCeeEEEEeec
Q 022810 127 ---------------------ME-ASYDRIYSIEMFEHM----KNY-------QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ---------------------~~-~~~D~v~~~~~l~~~----~~~-------~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.+ ++||+|+++.++++. .+. ..+++.+.++|+|||.+++..+.
T Consensus 81 ~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 81 KNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp -----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 34 689999998877653 222 24788999999999999987654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=120.41 Aligned_cols=90 Identities=12% Similarity=0.200 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc-CCcc--CCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-TFEM--EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~-~~~~--~~~~D~v~~~~ 138 (291)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++ .++++++++|+. .++. .++||+|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSR- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence 57889999999999999999988 78999999999999999877 337999999994 4443 3789999997
Q ss_pred cccccccHHHHHHHHHhccccCeeEE
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.+...+++++.++|||||.++
T Consensus 119 -----~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 -----RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -----SCCSGGGGGHHHHEEEEEEEE
T ss_pred -----CCHHHHHHHHHHHcCCCcEEE
Confidence 356788999999999999988
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=116.90 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
+++.+|||||||+|.+++.+++..|..+|+++|+++.+++.|+++++.+++. ++++.++|..+...+ ++||+|+..++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4678999999999999999999876678999999999999999999999984 699999999886555 47999887665
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. .-...++....+.|+++|.|+++..
T Consensus 100 Gg--~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 100 GG--RLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ch--HHHHHHHHHHHHHhCcCCEEEEECC
Confidence 43 2356788888999999999888764
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=123.07 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=87.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c-CCCccEEEEcccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~-~~~~D~v~~~~~l 140 (291)
..+|||||||+|.++..+++.+|+.++++||+++.+++.|++++.....++++++.+|+.++. . .++||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 349999999999999999998889999999999999999999875433358999999998753 2 2789999997543
Q ss_pred ccc-c---cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 141 EHM-K---NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~-~---~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
... + ...++++.++++|+|||++++.....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 221 1 12689999999999999999877643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=123.14 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----CCCCeEEEEccccCCcc---CCCcc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVADISTFEM---EASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~----~~~~i~~~~~d~~~~~~---~~~~D 132 (291)
...++.+|||||||+|..+..+++..+..+|+++|+|+.+++.+++++... ..++++++.+|+.+... .++||
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 92 SHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence 345678999999999999999998766689999999999999999887431 12479999999987642 37899
Q ss_pred EEEEcccccccccH----HHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+++.+....+.. ..+++.+.++|+|||++++...+
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99998766443322 68999999999999999987543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=117.33 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
+++.+|||||||+|.+++.+++..|..+|+++|+++.+++.|++++..+++. ++++.++|..+...+ .+||+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 5778999999999999999999876678999999999999999999999984 699999999886555 36999987655
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. .-...++....+.|+++|.|+++..
T Consensus 100 Gg--~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 100 GG--TLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ch--HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 42 2356788889999999999888754
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-13 Score=120.22 Aligned_cols=106 Identities=10% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Ccc--CCCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEM--EASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~~--~~~~D~v~~~ 137 (291)
..++.+|||+| |+|.++..++...+..+|+++|+|+.+++.|++++...++++++++++|+.+ ++. .++||+|+++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 34678999999 9999999999886668999999999999999999999888789999999988 543 2689999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeE-EEEee
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLL-FVHHF 168 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l-~i~~~ 168 (291)
.+++.. ....+++++.++|+|||.+ ++...
T Consensus 249 ~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 249 PPETLE-AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CCSSHH-HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCCchH-HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 877544 3578999999999999954 55443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=120.34 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
..+|.+|||+|||+|.+++.+++.. .++|+++|+|+.+++.+++|++.+++ ++++++++|+.++...+.||.|+++.+
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3579999999999999999999873 57999999999999999999999998 469999999999876688999999865
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.. ...++..+.++|+|||++.+....+
T Consensus 202 ~~----~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 202 VR----THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp SS----GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred Cc----HHHHHHHHHHHcCCCCEEEEEeeec
Confidence 43 3457777889999999988766544
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-14 Score=120.61 Aligned_cols=113 Identities=14% Similarity=0.236 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~ 127 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+. ++++++++|+.+.+.
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence 456677788888888999999999999999999998 67999999999999999998876655 579999999988755
Q ss_pred CCCccEEEEcccccccccH-HHHHH--------------HH--HhccccCeeEE
Q 022810 128 EASYDRIYSIEMFEHMKNY-QNLLK--------------KI--SKWMKEDTLLF 164 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~-~~~l~--------------~~--~~~L~pgG~l~ 164 (291)
+ +||+|+++.+++..... ..++. ++ +++|+|||.++
T Consensus 92 ~-~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 92 P-FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp C-CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred h-hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 4 79999998776544321 12222 22 35889999864
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=125.16 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=95.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~ 131 (291)
...+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.+++++...+++++.++++|+.+.+ .+ ++|
T Consensus 252 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 252 SIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred HHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence 34456788999999999999999999998766 799999999999999999999998888999999998875 33 679
Q ss_pred cEEEEccc------ccccccH----------------HHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEM------FEHMKNY----------------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~------l~~~~~~----------------~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+|+++.+ +...++. ..+++.+.++|||||.+++.+.+.
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99998543 2222222 578999999999999999877654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-14 Score=118.18 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---cc-C-CCccE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EM-E-ASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~----~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~---~~-~-~~~D~ 133 (291)
++.+|||||||+|..+..+++. .|+.+|+++|+++.+++.|+ ... ++++++++|+.+. +. . .+||+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~~gD~~~~~~l~~~~~~~fD~ 155 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLHQGDCSDLTTFEHLREMAHPL 155 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEEECcchhHHHHHhhccCCCCE
Confidence 4679999999999999999987 57899999999999988776 122 4799999999884 32 2 37999
Q ss_pred EEEcccccccccHHHHHHHHHh-ccccCeeEEEEee
Q 022810 134 IYSIEMFEHMKNYQNLLKKISK-WMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~-~L~pgG~l~i~~~ 168 (291)
|++... | .+...++.++.+ +|||||++++.+.
T Consensus 156 I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 156 IFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 998765 2 367889999997 9999999998654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-14 Score=124.15 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCC------cchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 022810 51 MLELYCERSRLEDGHTVLDVGCG------WGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG------~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~ 123 (291)
.++.++..+. .++.+||||||| +|..+..+++. +|+.+|+|+|+|+.+. ...++++++++|+.
T Consensus 205 ~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~ 274 (419)
T 3sso_A 205 HYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQN 274 (419)
T ss_dssp HHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTT
T ss_pred HHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEeccc
Confidence 3445555443 346899999999 66666666655 5889999999999972 12248999999999
Q ss_pred CCccC-------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 124 TFEME-------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 124 ~~~~~-------~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++.. ++||+|+++.+ ++..+....|+++.++|||||++++.+..
T Consensus 275 dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 275 DAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 86533 78999999754 56788899999999999999999998765
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=120.65 Aligned_cols=110 Identities=11% Similarity=0.063 Sum_probs=92.1
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCC-----CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSN-----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
...++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.++...++ ++.++++|........+||+|
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~~~~fD~I 205 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVV 205 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEE
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccccCCccEE
Confidence 3446789999999999999999887543 7899999999999999999988887 789999998775444789999
Q ss_pred EEcccccccccH------------------HHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEHMKNY------------------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~~~~------------------~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++++++.+++.. ..+++++.+.|+|||++++..+..
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 999997665321 258999999999999999988654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-14 Score=124.21 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=91.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CCCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~D~v~~~ 137 (291)
++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|++++..+++++++++++|+.+... ..+||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999987 67999999999999999999999998779999999987532 3689999998
Q ss_pred cccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 138 EMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 138 ~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.... .+...++..+.++|+|||.+++.+...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 765322 456789999999999999999877543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=120.41 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=87.5
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCc--c-CCCc
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE--M-EASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~i~~~~~d~~~~~--~-~~~~ 131 (291)
+...++.+|||||||+|..+..+++..|..+|+++|+|+.+++.|++++... ++ ++++++.+|+.+.. . .++|
T Consensus 116 ~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~f 195 (334)
T 1xj5_A 116 CSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 195 (334)
T ss_dssp TTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred hhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCc
Confidence 3345678999999999999999998766789999999999999999987653 33 47999999987642 2 2689
Q ss_pred cEEEEcccc--ccccc--HHHHHHHHHhccccCeeEEEEe
Q 022810 132 DRIYSIEMF--EHMKN--YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l--~~~~~--~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|+++... +...+ ...+++.+.++|+|||++++..
T Consensus 196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999997642 11122 4789999999999999999864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=123.33 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~-----~~~~D~v 134 (291)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|+++++.++++ +++++++|+.+... ..+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 468899999999999999999762 348999999999999999999999985 89999999977421 2589999
Q ss_pred EEccccc-----cc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFE-----HM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~-----~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+++++.. .. .++..+++.+.++|+|||++++++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9987663 22 345667888899999999999876543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-14 Score=123.63 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=89.5
Q ss_pred HHHHc--CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 55 YCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 55 ~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
+++.+ ...++.+|||||||+|..+..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||
T Consensus 183 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~D 253 (358)
T 1zg3_A 183 VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP-SAD 253 (358)
T ss_dssp HHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC-CCS
T ss_pred HHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC-Cce
Confidence 44444 344678999999999999999999999999999999 787766543 2469999999987 444 599
Q ss_pred EEEEcccccccccHH--HHHHHHHhcccc---CeeEEEEeecc
Q 022810 133 RIYSIEMFEHMKNYQ--NLLKKISKWMKE---DTLLFVHHFCH 170 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~ 170 (291)
+|++..++|++++.. .++++++++|+| ||++++.++..
T Consensus 254 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 254 AVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 999999999998866 999999999999 99999977654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-14 Score=118.39 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
..++.+|||||||+|.++..+ ..+++|+|+|+. ++.++++|+.+.+.+ ++||+|++..+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~ 124 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSI-----RNPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLS 124 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehh
Confidence 356789999999999998876 368999999987 456889999887665 78999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++ .+...+++++.++|+|||.+++.++.
T Consensus 125 l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 125 LMG-TNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp CCS-SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred ccc-cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 964 88999999999999999999997654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=121.91 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=90.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-C
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~ 129 (291)
...++... ..++.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++++...++ ++++++++|+.+++.+ +
T Consensus 207 a~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~ 285 (373)
T 3tm4_A 207 ANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVD 285 (373)
T ss_dssp HHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCS
T ss_pred HHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccC
Confidence 33444444 6788999999999999999999885445999999999999999999999998 5899999999998766 7
Q ss_pred CccEEEEccccccc-------cc-HHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHM-------KN-YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~-------~~-~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+||+|++++++... .+ +..+++.+.++| +|.+++.+.
T Consensus 286 ~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 286 SVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp CEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred CcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 89999999886432 12 367888888888 455444443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-14 Score=124.36 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D~v~~~~~ 139 (291)
.++.+|||+|||+|.++..+++. +++|+++|+|+.+++.|+++++.++++ ..+.++|+.+... .+.||+|+++++
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 46899999999999999999987 667999999999999999999999884 4677999887532 345999999876
Q ss_pred ccc---------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
... ..++..++..+.++|+|||.+++.+.+.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 522 2456789999999999999998766544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=125.17 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=93.6
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccE
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D~ 133 (291)
..+...++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.+++++...|+. +.++++|+.++.. +++||+
T Consensus 95 ~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~ 173 (464)
T 3m6w_A 95 VLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHR 173 (464)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEE
T ss_pred HhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCE
Confidence 3456778999999999999999999988654 79999999999999999999999997 9999999987652 378999
Q ss_pred EEEccccc------cccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFE------HMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~------~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+++.+.. ..++ ...+++.+.++|||||+|+.++.+.
T Consensus 174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 99865431 1111 2679999999999999999877654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=118.66 Aligned_cols=111 Identities=20% Similarity=0.123 Sum_probs=88.5
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCcc--CCCcc
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~--~~~~D 132 (291)
+...++.+|||||||+|..+..+++..|..+|+++|+++.+++.+++++...+ .++++++.+|+.+... .++||
T Consensus 74 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 74 TVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 153 (283)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred hcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce
Confidence 34456789999999999999999987667899999999999999999876432 2479999999977432 37899
Q ss_pred EEEEcccccccc--cH--HHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEHMK--NY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~~~--~~--~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+++......+ .. ..+++.+.++|+|||++++...+
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999976433222 22 68999999999999999987543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=120.76 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH--hC---CCCeEEEEccccCCc-c-CCCccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LE---LQNVEIIVADISTFE-M-EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~--~~---~~~i~~~~~d~~~~~-~-~~~~D~ 133 (291)
..++.+|||||||+|..+..+++..+..+|+++|+++.+++.|++++.. .+ .++++++.+|+.+.. . .++||+
T Consensus 75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 3466899999999999999999876678999999999999999998764 22 247999999998742 2 378999
Q ss_pred EEEcccccc---cc--c--HHHHHHHHHhccccCeeEEEEeec
Q 022810 134 IYSIEMFEH---MK--N--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 v~~~~~l~~---~~--~--~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+++...+. .+ . ...+++.+.++|+|||++++...+
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 999876644 11 1 378999999999999999987543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=117.99 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
..++.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++...+.++++++++|+.+.+. .
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-P 105 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC-C
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc-c
Confidence 45666777777888999999999999999999987 67999999999999999999887777789999999988754 4
Q ss_pred CccEEEEccccccc
Q 022810 130 SYDRIYSIEMFEHM 143 (291)
Q Consensus 130 ~~D~v~~~~~l~~~ 143 (291)
+||+|+++.+++..
T Consensus 106 ~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 106 KFDVCTANIPYKIS 119 (299)
T ss_dssp CCSEEEEECCGGGH
T ss_pred cCCEEEEcCCcccc
Confidence 89999998877544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=121.89 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-C-CeEEEEccccCCcc-----CCCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-NVEIIVADISTFEM-----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~-~i~~~~~d~~~~~~-----~~~~D~v 134 (291)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++..+++ + +++++++|+.+... ..+||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 467899999999999999999863 45999999999999999999999988 6 89999999987532 2589999
Q ss_pred EEcccccc---------cccHHHHHHHHHhccccCeeEEEEeec
Q 022810 135 YSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++++... ..+...++..+.+.|+|||++++++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99876522 256788999999999999999987654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=124.51 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=93.3
Q ss_pred HcCCC--CCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCcc
Q 022810 58 RSRLE--DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYD 132 (291)
Q Consensus 58 ~~~~~--~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D 132 (291)
.+... ++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..+++++.++++|+..+.. +++||
T Consensus 110 ~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD 189 (479)
T 2frx_A 110 ALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189 (479)
T ss_dssp HHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEE
T ss_pred HhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCC
Confidence 34555 899999999999999999999864 47999999999999999999999998889999999988653 37899
Q ss_pred EEEEcccc------ccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 133 RIYSIEMF------EHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~v~~~~~l------~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|+++.+. ...++ ...+++.+.++|||||++++++.+.
T Consensus 190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 99996432 11111 3568999999999999999887654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=125.16 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=94.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccE
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~ 133 (291)
..+...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...|+.++.++++|+.++. .+++||+
T Consensus 99 ~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~ 178 (456)
T 3m4x_A 99 TAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDR 178 (456)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEE
T ss_pred HHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCE
Confidence 445678899999999999999999998754 4799999999999999999999999988999999998764 2378999
Q ss_pred EEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~------~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+++.+.... + ....+++.+.++|||||+|+.++.+.
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 9997652111 1 12378999999999999999877654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=115.09 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=90.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.+..+|||||||+|.++..++...|..+|+++|+++.+++.+++++..+|+ +.++...|.....++++||+|+++-+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDRLDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccCCCCCcchHHHHHHHH
Confidence 457799999999999999999888899999999999999999999999888 5899999998877778999999999999
Q ss_pred ccccHH--HHHHHHHhccccCeeEEE
Q 022810 142 HMKNYQ--NLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~--~~l~~~~~~L~pgG~l~i 165 (291)
++++.. ..+ ++...|+|+|+++-
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 996542 345 89999999998654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-14 Score=120.46 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=86.2
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH--hCC--CCeEEEEccccCCc-c-CCCccE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LEL--QNVEIIVADISTFE-M-EASYDR 133 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~--~~~--~~i~~~~~d~~~~~-~-~~~~D~ 133 (291)
...++.+|||||||+|..+..+++..+..+|+++|+++.+++.|++++.. .++ ++++++.+|+.+.. . .++||+
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 92 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred hCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence 34567899999999999999999876668999999999999999998765 222 47999999987642 2 378999
Q ss_pred EEEcccccccc----cHHHHHHHHHhccccCeeEEEEeec
Q 022810 134 IYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+++......+ ....+++.+.++|+|||++++...+
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99976543221 2356899999999999999987644
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-14 Score=118.63 Aligned_cols=108 Identities=22% Similarity=0.126 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCc-c-CCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE-M-EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~i~~~~~d~~~~~-~-~~~~D~v~ 135 (291)
.++.+|||||||+|..+..+++..+..+|++||+++.+++.|++++... +. ++++++.+|+.+.. . .++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 4578999999999999999997755689999999999999999987542 22 47999999987642 2 37899999
Q ss_pred Ecccccccc----cHHHHHHHHHhccccCeeEEEEeec
Q 022810 136 SIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++......+ ....+++.+.++|+|||++++...+
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 976543221 1367999999999999999987543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=123.14 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc-----CCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~-----~~~~D~v~ 135 (291)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..++++ +++++++|+.+... ..+||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 47889999999999999999986 2459999999999999999999999886 89999999987532 36899999
Q ss_pred Eccccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++++.... .+...++..+.+.|+|||.+++.+...
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 98765322 456789999999999999988877654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=119.44 Aligned_cols=108 Identities=15% Similarity=0.026 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH--hC--CCCeEEEEccccCCc-c-CCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LE--LQNVEIIVADISTFE-M-EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~--~~--~~~i~~~~~d~~~~~-~-~~~~D~v~ 135 (291)
..+.+|||||||+|..+..+++..+..+|+++|+++.+++.+++++.. .+ .++++++.+|+.+.. . .++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 456899999999999999999876678999999999999999998754 22 247999999987642 2 37899999
Q ss_pred Ecccccccc-----cHHHHHHHHHhccccCeeEEEEeec
Q 022810 136 SIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++..-.+.. ....+++.+.++|+|||++++...+
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 865432121 2368999999999999999997543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=121.82 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=94.9
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCc
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASY 131 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~ 131 (291)
+...+...++.+|||+|||+|..+..+++..++.+|+++|+++.+++.+++++...++ ++.++++|+.+.. .+ ++|
T Consensus 238 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 238 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCE
T ss_pred HHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCCC
Confidence 3444567889999999999999999999998668999999999999999999998888 6899999998875 33 689
Q ss_pred cEEEEcccc------ccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMF------EHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l------~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+|+++.+. .+.++ ...+++.+.+.|||||++++++.+.
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 999986543 22222 1578999999999999999987644
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-12 Score=105.29 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=83.7
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~ 138 (291)
....++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ +++++++|+.+++ .+||+|+++.
T Consensus 45 ~~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~D~v~~~~ 120 (207)
T 1wy7_A 45 LGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN--SRVDIVIMNP 120 (207)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--CCCSEEEECC
T ss_pred cCCCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC--CCCCEEEEcC
Confidence 345578899999999999999999873 35899999999999999999988877 8999999998864 5899999999
Q ss_pred cccccc--cHHHHHHHHHhccccCeeEEE
Q 022810 139 MFEHMK--NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 139 ~l~~~~--~~~~~l~~~~~~L~pgG~l~i 165 (291)
+++... ....+++.+.+.+ |+.+++
T Consensus 121 p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 121 PFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp CCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred CCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 987763 3457888888888 554433
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=120.75 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH--hCC--CCeEEEEccccCCc--cCCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LEL--QNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~--~~~--~~i~~~~~d~~~~~--~~~~~D~v~ 135 (291)
.++.+|||||||+|..+..+++..|..+|+++|+|+.+++.|++++.. .+. ++++++++|+.+.. .+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 456899999999999999999876678999999999999999998765 222 47999999987642 237899999
Q ss_pred Ecccccc--cccH--HHHHHHHHhccccCeeEEEEeec
Q 022810 136 SIEMFEH--MKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~--~~~~--~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++..-.. .... ..+++.+.+.|+|||++++...+
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9763211 1111 68999999999999999997543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=117.11 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=85.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-----------CCCCeEEEEccccCCcc-C
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-----------ELQNVEIIVADISTFEM-E 128 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~i~~~~~d~~~~~~-~ 128 (291)
..++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++ .. ..++++++.+|+.+... .
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~ 150 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 150 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhccc
Confidence 345789999999999999999987 6789999999999999999987 32 22479999999876422 4
Q ss_pred CCccEEEEcccccccc--c--HHHHHHHHHhccccCeeEEEEeec
Q 022810 129 ASYDRIYSIEMFEHMK--N--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~--~--~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++||+|+++......+ . ...+++.+.++|+|||++++...+
T Consensus 151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 7899999976542211 1 267899999999999999987543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=107.76 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++. +++++++|+.+++ ++||+|+++.+
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~--~~~D~v~~~~p 119 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS--GKYDTWIMNPP 119 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC--CCeeEEEECCC
Confidence 4557889999999999999999976 34579999999999999988764 6899999998864 78999999999
Q ss_pred cccccc--HHHHHHHHHhcc
Q 022810 140 FEHMKN--YQNLLKKISKWM 157 (291)
Q Consensus 140 l~~~~~--~~~~l~~~~~~L 157 (291)
+++..+ ...+++++.+.+
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp C-------CHHHHHHHHHHE
T ss_pred chhccCchhHHHHHHHHHhc
Confidence 988853 346888888887
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=118.69 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.....+++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++++++++++|+.+.
T Consensus 269 ~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~ 346 (433)
T 1uwv_A 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 (433)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence 344566777777777778889999999999999999987 789999999999999999999999888899999999873
Q ss_pred c----cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 E----ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~----~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .. ++||+|+++++..... .+++.+.+ ++|+++++++.
T Consensus 347 l~~~~~~~~~fD~Vv~dPPr~g~~---~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLLDPARAGAA---GVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CSSSGGGTTCCSEEEECCCTTCCH---HHHHHHHH-HCCSEEEEEES
T ss_pred hhhhhhhcCCCCEEEECCCCccHH---HHHHHHHh-cCCCeEEEEEC
Confidence 2 22 6899999998875443 45555554 78999888854
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.3e-14 Score=120.75 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCc-c-CCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE-M-EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~i~~~~~d~~~~~-~-~~~~D~v~ 135 (291)
.++.+|||||||+|..+..+++..|..+|+++|+++.+++.|++++... ++ ++++++.+|+.+.. . .++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999998766789999999999999999987643 22 47999999987742 2 37899999
Q ss_pred Eccccccccc--H--HHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKN--Y--QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~--~--~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++...+..+. . ..+++.+.++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9764321111 1 689999999999999999875
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=107.09 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCC---------CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEE-EccccCCc----
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSN---------CKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFE---- 126 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~---------~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~-~~d~~~~~---- 126 (291)
+.++.+|||+|||+|..+..+++..+. .+|+++|+|+.. ...+++++ .+|+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence 467899999999999999999998744 799999999841 23468889 89987643
Q ss_pred ----cC-CCccEEEEcccccc----cccH-------HHHHHHHHhccccCeeEEEEeecc
Q 022810 127 ----ME-ASYDRIYSIEMFEH----MKNY-------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ----~~-~~~D~v~~~~~l~~----~~~~-------~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.+ ++||+|+++.+++. ..+. ..+++.+.++|+|||.+++..+..
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 12 58999999765443 2232 478999999999999999876543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.2e-13 Score=117.68 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------------CEE
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKI 90 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~--------------------------------------~~v 90 (291)
+.+...++...+..++.+|||++||+|.+++.++....+ .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 345556677777788999999999999999998876311 579
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccc----ccHHHHHHHHHhcccc--CeeE
Q 022810 91 TGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLL 163 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~p--gG~l 163 (291)
+|+|+++.+++.|++++...++. ++++.++|+.++..+.+||+|++++++..- .+...+++.+.+.|++ |+.+
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 340 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSY 340 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 99999999999999999999984 799999999998766889999999997432 3445677777777765 8888
Q ss_pred EEEeecc
Q 022810 164 FVHHFCH 170 (291)
Q Consensus 164 ~i~~~~~ 170 (291)
++.+...
T Consensus 341 ~iit~~~ 347 (385)
T 3ldu_A 341 YLITSYE 347 (385)
T ss_dssp EEEESCT
T ss_pred EEEECCH
Confidence 8876543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=117.16 Aligned_cols=109 Identities=17% Similarity=0.342 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
..++..+++ ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..++++ ++++.+|+.+...
T Consensus 279 e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~- 351 (425)
T 2jjq_A 279 VNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV- 351 (425)
T ss_dssp HHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-
T ss_pred HHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-
Confidence 344455544 456789999999999999999986 679999999999999999999999886 9999999998753
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+||+|+++++..... ..+++.+. .|+|+|++++++
T Consensus 352 ~~fD~Vv~dPPr~g~~--~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 352 KGFDTVIVDPPRAGLH--PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TTCSEEEECCCTTCSC--HHHHHHHH-HHCCSEEEEEES
T ss_pred cCCCEEEEcCCccchH--HHHHHHHH-hcCCCcEEEEEC
Confidence 3899999988754332 34555554 489999998864
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=117.19 Aligned_cols=122 Identities=14% Similarity=0.148 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------------CEE
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKI 90 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~--------------------------------------~~v 90 (291)
+.+...++...+..++..|||++||+|.+++.++....+ .+|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 445566777778888999999999999999998876322 469
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccc----ccHHHHHHHHHhcccc--CeeE
Q 022810 91 TGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLL 163 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~p--gG~l 163 (291)
+|+|+|+.+++.|++++...++. +++++++|+.+.+.+.+||+|++++++..- .+...+++.+.+.|++ ||.+
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 346 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSV 346 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEE
Confidence 99999999999999999999985 599999999998766889999999987432 2344566666666655 8888
Q ss_pred EEEeecc
Q 022810 164 FVHHFCH 170 (291)
Q Consensus 164 ~i~~~~~ 170 (291)
++.+...
T Consensus 347 ~iit~~~ 353 (393)
T 3k0b_A 347 YVLTSYE 353 (393)
T ss_dssp EEEECCT
T ss_pred EEEECCH
Confidence 8876643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=129.62 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=90.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCc-c-CCCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE-M-EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~-~-~~~~D~v~~~~ 138 (291)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++..++++ +++++++|+.+.. . .++||+|++++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 68899999999999999998752 347999999999999999999999985 7999999998742 2 27899999987
Q ss_pred cc-----------cccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MF-----------EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l-----------~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+. ....++..++..+.++|+|||++++++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 53 23356788999999999999999987654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=117.60 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++.. ++ .+.+|+++|+|+.+++.++++++.+++ ++++++++|+.+.. ++||+|+++.+.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcH
Confidence 4788999999999999999 76 378999999999999999999999988 57999999998876 789999998654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.. ..+++.+.++|+|||.+++.+..+.
T Consensus 269 ~~----~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 269 FA----HKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp TG----GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred hH----HHHHHHHHHHcCCCCEEEEEEeecC
Confidence 32 3788899999999999988776553
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=115.67 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------------CEE
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKI 90 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~--------------------------------------~~v 90 (291)
+.+...++...+..++..|||.+||+|.+++.++....+ .++
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 345566677778888999999999999999998865322 469
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccc----ccHHHHHHHHHhcccc--CeeE
Q 022810 91 TGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLL 163 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~p--gG~l 163 (291)
+|+|+++.+++.|++|+...++. +++++++|+.+++.+.+||+|++++++..- .+...+++.+.+.||+ ||.+
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 339 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQ 339 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 99999999999999999999985 599999999998766789999999987432 3456677777777765 9988
Q ss_pred EEEeecc
Q 022810 164 FVHHFCH 170 (291)
Q Consensus 164 ~i~~~~~ 170 (291)
++.+...
T Consensus 340 ~iit~~~ 346 (384)
T 3ldg_A 340 FILTNDT 346 (384)
T ss_dssp EEEESCT
T ss_pred EEEECCH
Confidence 8877644
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=121.50 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-------------CCCEEEEEcCCHHHHHHHHHHHHHhCCC--C
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-------------SNCKITGICNSKTQKEFIEEQCRVLELQ--N 114 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~ 114 (291)
...+.+++.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|+.++...++. +
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 344556666666778899999999999999888652 2468999999999999999999888874 6
Q ss_pred eEEEEccccCCccCCCccEEEEccccccccc-----------------HHHHHHHHHhccccCeeEEEEeec
Q 022810 115 VEIIVADISTFEMEASYDRIYSIEMFEHMKN-----------------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 115 i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~-----------------~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.+.++|....+...+||+|++++++..... ...+++++.+.|+|||++.+..+.
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 7889999887655468999999998875421 147899999999999999888764
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=107.96 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.++.+|||||||.|.++..+. ++.+|+++|+++.+++.+++++...+. +..+..+|....+++++||+|++.-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCCCCcchHHHHHHHH
Confidence 567899999999999999887 589999999999999999999888775 7899999999887778999999999998
Q ss_pred ccccHH-HHHHHHHhccccCeeEEE
Q 022810 142 HMKNYQ-NLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~-~~l~~~~~~L~pgG~l~i 165 (291)
++++.. ....++...|+++|+++-
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred HhhhhchhhHHHHHHHhcCCCEEEE
Confidence 885432 233378889999987543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=105.05 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=80.6
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022810 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--- 127 (291)
+..+.++.. +.++.+|||+|||+|..+..++++ +.+|+|+|+++.. ..++++++++|+.+...
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~ 79 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDD 79 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHH
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHH
Confidence 444555544 467899999999999999999987 7899999999851 23579999999987541
Q ss_pred -----C----CCccEEEEccccccc-----------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 128 -----E----ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 -----~----~~~D~v~~~~~l~~~-----------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
. ++||+|+++...... .....+++.+.++|||||.|++..+..
T Consensus 80 ~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 80 IDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp HHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 1 389999997643211 123567888999999999999877643
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=113.12 Aligned_cols=100 Identities=12% Similarity=0.007 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH----hCCCCeEEEEccccCCccCCCccEEEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV----LELQNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~----~~~~~i~~~~~d~~~~~~~~~~D~v~~ 136 (291)
...+.+|||||||+|..+..+++. + .+|+++|+++.+++.|++++.. ...++++++.+|+.+.. ++||+|++
T Consensus 70 ~~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~ 145 (262)
T 2cmg_A 70 KKELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFC 145 (262)
T ss_dssp SSCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEE
Confidence 445689999999999999999987 6 8999999999999999876532 12247999999998865 78999999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.. .++..+++.+.+.|+|||++++....
T Consensus 146 d~-----~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 146 LQ-----EPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp SS-----CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CC-----CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 73 34456999999999999999986543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-13 Score=117.57 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-HhCC-CCeEEE--EccccCCc
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-VLEL-QNVEII--VADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~-~~~~-~~i~~~--~~d~~~~~ 126 (291)
++..+.+...+.++.+|||||||+|.++..++++ .+|+|||+++ ++..++++.. .... .++.++ ++|+.+++
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 70 KLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp HHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred HHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence 3455555545568899999999999999999876 5899999998 5322221100 0001 168899 99998865
Q ss_pred cCCCccEEEEccccccccc----HH---HHHHHHHhccccCe--eEEEEeec
Q 022810 127 MEASYDRIYSIEMFEHMKN----YQ---NLLKKISKWMKEDT--LLFVHHFC 169 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~----~~---~~l~~~~~~L~pgG--~l~i~~~~ 169 (291)
+++||+|+|+.+ ++..+ .. .+++.+.++||||| .+++..+.
T Consensus 146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 578999999876 33322 11 37889999999999 99887665
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-13 Score=114.63 Aligned_cols=107 Identities=13% Similarity=0.062 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEE-EEccccCCcc-
Q 022810 51 MLELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI-IVADISTFEM- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~-~~~d~~~~~~- 127 (291)
++..+++.+.+. ++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.++ . .++.. ...|+..+..
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~----~-~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ----D-DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT----C-TTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh----C-cccceecccCceecchh
Confidence 455666666654 5779999999999999999887 246999999999999875432 1 13332 2345544332
Q ss_pred --C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 --E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 --~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+ .+||+|++..+++++ ..++.++.++|+|||.+++.
T Consensus 146 ~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEE
Confidence 2 359999998888755 67899999999999998885
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-13 Score=108.99 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=78.5
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---C-CCccE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~D~ 133 (291)
.+++.++.+|||+|||. +++|+|+.|++.|+++... +++++++|+.+++. + ++||+
T Consensus 7 ~~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp TTTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred ccCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeE
Confidence 35678999999999985 2399999999999877532 48999999998776 4 78999
Q ss_pred EEEccccccc-ccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHM-KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++..+++++ ++...++++++++|||||++++..+
T Consensus 67 V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 67 ILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp EEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 9999999999 8999999999999999999999544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-13 Score=115.92 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=80.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC------CeEEE--Ecccc
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ------NVEII--VADIS 123 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~------~i~~~--~~d~~ 123 (291)
+..+.+...+.++.+|||||||+|.++..+++. .+|+|||+++ ++..+++ .... ++.++ ++|+.
T Consensus 63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~----~~~~~~~~~~~v~~~~~~~D~~ 134 (265)
T 2oxt_A 63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHE----VPRITESYGWNIVKFKSRVDIH 134 (265)
T ss_dssp HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCC----CCCCCCBTTGGGEEEECSCCTT
T ss_pred HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhh----hhhhhhccCCCeEEEecccCHh
Confidence 445555555678899999999999999999876 6899999998 4322211 1111 68889 89998
Q ss_pred CCccCCCccEEEEcccccccccH----H---HHHHHHHhccccCe--eEEEEeec
Q 022810 124 TFEMEASYDRIYSIEMFEHMKNY----Q---NLLKKISKWMKEDT--LLFVHHFC 169 (291)
Q Consensus 124 ~~~~~~~~D~v~~~~~l~~~~~~----~---~~l~~~~~~L~pgG--~l~i~~~~ 169 (291)
+++ +++||+|+|+.+ ++..+. . .+++.+.++|+||| .+++..+.
T Consensus 135 ~l~-~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 135 TLP-VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp TSC-CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HCC-CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 875 578999999876 433221 1 37889999999999 99887765
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=118.28 Aligned_cols=112 Identities=16% Similarity=0.244 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...+.+++.+...++.+|||+|||+|.++..++++. +..+++|+|+++.+++.| .++.++++|+.+....
T Consensus 26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~ 96 (421)
T 2ih2_A 26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPG 96 (421)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCS
T ss_pred HHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCcc
Confidence 445566666665567799999999999999999875 568999999999988766 3789999999887655
Q ss_pred CCccEEEEccccccccc-----------------------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEHMKN-----------------------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~-----------------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++||+|++++++..... ...+++.+.++|+|||.+++..+..
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 78999999987643311 1256889999999999999988764
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=106.24 Aligned_cols=90 Identities=20% Similarity=0.318 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+.+.+
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--YNNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--CSSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--CCCeEEEECchhhCCcc
Confidence 356777888888889999999999999999999998 78999999999999999998873 34899999999987766
Q ss_pred -CCccEEEEcccccc
Q 022810 129 -ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 -~~~D~v~~~~~l~~ 142 (291)
.+||.|+++.+++.
T Consensus 112 ~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 112 KLDFNKVVANLPYQI 126 (295)
T ss_dssp GSCCSEEEEECCGGG
T ss_pred cCCccEEEEeCcccc
Confidence 67999999977643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-13 Score=115.49 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEE-EccccCCc--
Q 022810 51 MLELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFE-- 126 (291)
Q Consensus 51 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~-~~d~~~~~-- 126 (291)
++..+++.+... ++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++.. ++... ..++....
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~-----~~~~~~~~~~~~~~~~ 97 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDE-----RVVVMEQFNFRNAVLA 97 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCT-----TEEEECSCCGGGCCGG
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCc-----cccccccceEEEeCHh
Confidence 345556666554 46799999999999999999872 3599999999999998765432 22111 11221111
Q ss_pred -cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 -ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 -~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+ ..+|.+.+..++..+ ..+++++.++|||||.+++..
T Consensus 98 ~~~~~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 98 DFEQGRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp GCCSCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred HcCcCCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE
Confidence 11 125666665555444 679999999999999998843
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=114.36 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.....++..+++.+... +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++++++++.+|+.+.
T Consensus 197 ~~~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~ 273 (369)
T 3bt7_A 197 AMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 273 (369)
T ss_dssp HHHHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHH
T ss_pred HHHHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence 33456667777776654 578999999999999999875 679999999999999999999999988899999998775
Q ss_pred cc--C---------------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 126 EM--E---------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~~--~---------------~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.. . .+||+|+++++...+ ...+.+.|+++|.+++.+.++
T Consensus 274 ~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~------~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 274 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL------DSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp HHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC------CHHHHHHHTTSSEEEEEESCH
T ss_pred HHHHhhccccccccccccccCCCCEEEECcCcccc------HHHHHHHHhCCCEEEEEECCH
Confidence 31 1 279999998765422 344555566888877766544
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-13 Score=115.50 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=79.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcC----CHHHHHHHHHHHHHhCCCCeEEEEc-cccCCcc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN----SKTQKEFIEEQCRVLELQNVEIIVA-DISTFEM 127 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~----s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~~~ 127 (291)
..+.++..+.++.+|||||||+|.++..++++ .+|+|+|+ ++.+++.+. ....+.+++.++++ |+..++
T Consensus 72 ~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~- 145 (305)
T 2p41_A 72 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP- 145 (305)
T ss_dssp HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC-
T ss_pred HHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC-
Confidence 33444434567899999999999999999976 48999999 554432111 11112246899999 888764
Q ss_pred CCCccEEEEccccc---ccccHH---HHHHHHHhccccCeeEEEEeecc
Q 022810 128 EASYDRIYSIEMFE---HMKNYQ---NLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~v~~~~~l~---~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++||+|+|+.++. +..+.. .++..+.++|||||.+++..+..
T Consensus 146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 36899999987653 222222 47888999999999999876654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-12 Score=111.64 Aligned_cols=101 Identities=14% Similarity=0.015 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---------------CCCCeEEEEccccCCcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---------------ELQNVEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~---------------~~~~i~~~~~d~~~~~~ 127 (291)
++.+|||+|||+|..++.++++.++.+|+++|+++.+++.+++|++.+ ++++++++++|+.....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 578999999999999999999876779999999999999999999998 77569999999987542
Q ss_pred --CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 128 --EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 --~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.++||+|++++.. ....+++.+.+.|+|||.++++.
T Consensus 127 ~~~~~fD~I~lDP~~----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPFG----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCSS----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCCC----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 2579999976532 23578899999999999888865
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=105.86 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=74.6
Q ss_pred cCCCCCCEEEEEcCC------cchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEE-EEccccCCccCCC
Q 022810 59 SRLEDGHTVLDVGCG------WGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEI-IVADISTFEMEAS 130 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG------~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~-~~~d~~~~~~~~~ 130 (291)
+.++++.+|||+||| +|. ..+++..+ +.+|+|+|+++. ++++++ +++|+.+.+..++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~~~ 123 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTANK 123 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCSSC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCccCc
Confidence 456789999999994 466 45566665 589999999997 136788 9999998765578
Q ss_pred ccEEEEcccccc-----------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~-----------~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|+++...+. ......+++.+.++|||||.+++..+..
T Consensus 124 fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 124 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp EEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred ccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 999999754221 1224579999999999999999976543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-12 Score=112.22 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEEccccCCcc---CCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEM---EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~--i~~~~~d~~~~~~---~~~~D~v~ 135 (291)
.++.+|||++||+|.+++.++++.++ .+|+++|+++.+++.+++|++.+++++ ++++.+|+.+... .++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46789999999999999999987545 689999999999999999999999854 9999999977543 36899999
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+++ . .....+++.+.+.|+|||+++++.
T Consensus 131 lDP-~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 987 2 223568899999999999888866
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-11 Score=103.73 Aligned_cols=113 Identities=12% Similarity=-0.038 Sum_probs=88.6
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~ 131 (291)
..+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..++++++++.+|+.++... .+|
T Consensus 96 ~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~f 175 (309)
T 2b9e_A 96 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV 175 (309)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred HHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCC
Confidence 34567889999999999999999999874 4579999999999999999999999988899999999876432 579
Q ss_pred cEEEEccccccc------c-----------c-------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHM------K-----------N-------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~------~-----------~-------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|.|+++.+.... + + ...+|+.+.++|+ ||+++.++.+.
T Consensus 176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 999986532110 1 1 1346777777786 89888776543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=102.65 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++.. .++++++++|+.+.+.+
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCcc
Confidence 455677778788888999999999999999999998 68999999999999999987753 24899999999987655
Q ss_pred --CCccEEEEccccc
Q 022810 129 --ASYDRIYSIEMFE 141 (291)
Q Consensus 129 --~~~D~v~~~~~l~ 141 (291)
..| .|+++.+++
T Consensus 92 ~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 92 KNQSY-KIFGNIPYN 105 (244)
T ss_dssp SSCCC-EEEEECCGG
T ss_pred cCCCe-EEEEeCCcc
Confidence 344 577776653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-13 Score=114.28 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-- 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-- 128 (291)
.++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..++++++++|+.+.+.+
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccC
Confidence 4566777788888999999999999999999988 6899999999999988887664 234799999999987654
Q ss_pred CCccEEEEcccccccc-----------cHHHHH----HHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMK-----------NYQNLL----KKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~-----------~~~~~l----~~~~~~L~pgG~l~i~~ 167 (291)
++| .|+++.++.... .....+ +.+.++|+|||.+.+..
T Consensus 93 ~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 93 QRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 578 788876553321 111223 66889999999977644
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=102.19 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++ +|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++++++|+.+.+.+
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChh
Confidence 4566778888888888 9999999999999999987 68999999999999999987752 4899999999987765
Q ss_pred --CCccEEEEccccccc
Q 022810 129 --ASYDRIYSIEMFEHM 143 (291)
Q Consensus 129 --~~~D~v~~~~~l~~~ 143 (291)
..+|.|++|.+++..
T Consensus 107 ~~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 107 EVPQGSLLVANLPYHIA 123 (271)
T ss_dssp GSCTTEEEEEEECSSCC
T ss_pred hccCccEEEecCccccc
Confidence 378999999887543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=105.16 Aligned_cols=89 Identities=21% Similarity=0.236 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--- 127 (291)
+++.+++.+...++.+|||+|||+|.++..+++.+|+.+|+|+|.|+.+++.|++++...+ ++++++++|+.+++.
T Consensus 14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLK 92 (301)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHH
Confidence 3455666777788999999999999999999999877899999999999999999988776 589999999987641
Q ss_pred --C-CCccEEEEcccc
Q 022810 128 --E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 --~-~~~D~v~~~~~l 140 (291)
. .+||.|+++...
T Consensus 93 ~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 93 TLGIEKVDGILMDLGV 108 (301)
T ss_dssp HTTCSCEEEEEEECSC
T ss_pred hcCCCCCCEEEEcCcc
Confidence 1 479999987654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=114.29 Aligned_cols=120 Identities=8% Similarity=0.031 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC------------------CCEEEEEcCCHHHHHHHHHHHHHhCC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS------------------NCKITGICNSKTQKEFIEEQCRVLEL 112 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p------------------~~~v~~vD~s~~~~~~a~~~~~~~~~ 112 (291)
....+++.+...++.+|||.|||+|.++..+++... ..+++|+|+++.++..|+.++...++
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi 236 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 236 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 344455666667788999999999999988876421 24799999999999999999888777
Q ss_pred CC-----eEEEEccccCCcc-C-CCccEEEEccccccccc--------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 113 QN-----VEIIVADISTFEM-E-ASYDRIYSIEMFEHMKN--------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 113 ~~-----i~~~~~d~~~~~~-~-~~~D~v~~~~~l~~~~~--------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+. +.+.++|....+. . .+||+|++++++..... ...++.++.+.|+|||++.+..+..
T Consensus 237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 54 7889999876432 2 68999999998865422 2378999999999999998877653
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=101.04 Aligned_cols=88 Identities=14% Similarity=0.252 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+++.+
T Consensus 15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHH
Confidence 355667788888889999999999999999999987 68999999999999999988764 34899999999987653
Q ss_pred -----CCccEEEEccccc
Q 022810 129 -----ASYDRIYSIEMFE 141 (291)
Q Consensus 129 -----~~~D~v~~~~~l~ 141 (291)
++|| |+++.+++
T Consensus 91 ~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 91 SVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp GSCCSSCEE-EEEECCHH
T ss_pred HhccCCCeE-EEecCCcc
Confidence 3577 78877663
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=110.00 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC------------------------------------------C
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY------------------------------------------S 86 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------p 86 (291)
+.+...++...+..++..|||.+||+|.+++.++... +
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 3455666777777888999999999999999887652 1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC---CCccEEEEccccccc----ccHHHHHHHHH---h
Q 022810 87 NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKIS---K 155 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~---~~~D~v~~~~~l~~~----~~~~~~l~~~~---~ 155 (291)
..+++|+|+++.+++.|+.|+...|++ .+++.++|+.++..+ ++||+|++|+++..- .+...+++.+. +
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk 335 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK 335 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence 257999999999999999999999995 499999999987544 289999999987432 23344454444 4
Q ss_pred ccccCeeEEEEeecc
Q 022810 156 WMKEDTLLFVHHFCH 170 (291)
Q Consensus 156 ~L~pgG~l~i~~~~~ 170 (291)
.+.|||.+++.+...
T Consensus 336 ~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 336 NQFGGWNLSLFSASP 350 (703)
T ss_dssp HHCTTCEEEEEESCH
T ss_pred hhCCCCeEEEEeCCH
Confidence 455899998877654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-10 Score=106.56 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=91.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCC----CCCCEEEEEcCCcchHHH---HHHHHC-CCCEEEEEcCCHHHHHHHHHH
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSRL----EDGHTVLDVGCGWGSLSL---YIAQKY-SNCKITGICNSKTQKEFIEEQ 106 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~---~l~~~~-p~~~v~~vD~s~~~~~~a~~~ 106 (291)
..|+.+....+..+.+....+.++... .....|||+|||+|.+.. ..+++. ...+|++||.|+ +...+++.
T Consensus 325 evFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~ 403 (637)
T 4gqb_A 325 EVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLEN 403 (637)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHH
T ss_pred hhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHH
Confidence 345544445556666666666555432 234579999999999844 444442 113789999998 45677888
Q ss_pred HHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEE
Q 022810 107 CRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 107 ~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.+.++. ++|+++.+|++++..++++|+||+-.+=..+ +...+.+....+.|||||+++
T Consensus 404 v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 404 WQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 888888 5799999999999888999999996542222 344577888889999999863
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.6e-11 Score=99.91 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=67.6
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCH-------HHHHHHHHHHHHhCCC-CeEEEEccccCCc--cC
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK-------TQKEFIEEQCRVLELQ-NVEIIVADISTFE--ME 128 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~-------~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~--~~ 128 (291)
+...++.+|||+|||+|..+..+++. +.+|+++|+|+ .+++.|++++..+++. +++++++|+.+.. .+
T Consensus 79 ~~~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~ 156 (258)
T 2r6z_A 79 VNHTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALV 156 (258)
T ss_dssp TTGGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred hCcCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhh
Confidence 34456789999999999999999986 78999999999 9999999888777663 5999999998752 22
Q ss_pred ---CCccEEEEcccccc
Q 022810 129 ---ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 ---~~~D~v~~~~~l~~ 142 (291)
++||+|++++++.+
T Consensus 157 ~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 157 KTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHCCCSEEEECCCC--
T ss_pred ccCCCccEEEECCCCCC
Confidence 58999999887654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=106.52 Aligned_cols=147 Identities=12% Similarity=0.042 Sum_probs=101.9
Q ss_pred cCCChHHHHHhhCC---CCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-----
Q 022810 15 YELPTSFFKLVLGK---YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS----- 86 (291)
Q Consensus 15 yd~~~~~y~~~~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p----- 86 (291)
.|...+.|+.++.. ...-..|.|-.+ ......+++.+...++ +|||.+||+|.+...+++...
T Consensus 202 ~D~lG~~yE~ll~~~a~~~~k~~G~fyTP--------~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~ 272 (544)
T 3khk_A 202 KDILGHVYEYFLGQFALAEGKQGGQYYTP--------KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANV 272 (544)
T ss_dssp CCSHHHHHHHHHHHHHHTTTCCSTTTCCC--------HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCccCCeEeCC--------HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccc
Confidence 45666788877742 111111333211 3444555565555555 999999999999888754321
Q ss_pred ----------CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc-C-CCccEEEEccccccc----------
Q 022810 87 ----------NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-E-ASYDRIYSIEMFEHM---------- 143 (291)
Q Consensus 87 ----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~-~-~~~D~v~~~~~l~~~---------- 143 (291)
...++|+|+++.++..|+.++...+++ ++.+.++|....+. . .+||+|++++++..-
T Consensus 273 ~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d 352 (544)
T 3khk_A 273 KHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADD 352 (544)
T ss_dssp HTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTC
T ss_pred cccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhh
Confidence 358999999999999999999888873 44447888765432 2 789999999988631
Q ss_pred ---------------c----cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 144 ---------------K----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 144 ---------------~----~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+ ..-.++..+.+.|+|||++.+..|..
T Consensus 353 ~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 353 PRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp GGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred hhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 0 01258999999999999998887653
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=96.80 Aligned_cols=88 Identities=16% Similarity=0.258 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
...++.+++.+...++.+|||||||+|.++..+++..+. .+|+++|+|+.+++.++++. .++++++++|+.+++
T Consensus 28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFD 103 (279)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCC
Confidence 345667778888888999999999999999999988421 23999999999999999883 237999999999876
Q ss_pred cCC-------CccEEEEcccc
Q 022810 127 MEA-------SYDRIYSIEMF 140 (291)
Q Consensus 127 ~~~-------~~D~v~~~~~l 140 (291)
.+. ..+.|++|.++
T Consensus 104 ~~~~~~~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 104 FGSIARPGDEPSLRIIGNLPY 124 (279)
T ss_dssp GGGGSCSSSSCCEEEEEECCH
T ss_pred hhHhcccccCCceEEEEccCc
Confidence 542 23467887765
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.6e-10 Score=102.70 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCC--c-c-CCCc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTF--E-M-EASY 131 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~---p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~--~-~-~~~~ 131 (291)
..++.+|||.+||+|.+...+++.. +..+++|+|+++.++..|+.++...|+ +++.+.++|.... + . ..+|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 3467899999999999999888774 257899999999999999999988888 4688999998765 2 2 2789
Q ss_pred cEEEEcccccccc--------c---------------HHHHHHHHHhccc-cCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMK--------N---------------YQNLLKKISKWMK-EDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~--------~---------------~~~~l~~~~~~L~-pgG~l~i~~~~~ 170 (291)
|+|++|+++..-. + .-.++..+.+.|+ |||++.+..+..
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence 9999998874210 0 1248999999999 999998887754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=97.82 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=74.1
Q ss_pred HHHHHHcCCCCC--CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C-C-CCeEEEEcc
Q 022810 53 ELYCERSRLEDG--HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E-L-QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~-~-~~i~~~~~d 121 (291)
+.+++.+.+.++ .+|||+|||+|..+..+++. +++|+++|.++.+.+.++++++.. + + ++++++++|
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 445566667777 89999999999999999998 779999999998877777665432 2 3 379999999
Q ss_pred ccCCcc--CCCccEEEEcccccccccHHHHHHHHHhcccc
Q 022810 122 ISTFEM--EASYDRIYSIEMFEHMKNYQNLLKKISKWMKE 159 (291)
Q Consensus 122 ~~~~~~--~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p 159 (291)
..++.. +.+||+|++++++.+-.. ...+++..+.|++
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y~~~~~-saavkk~~~~lr~ 192 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPHKQK-SALVKKEMRVFQS 192 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCCCCC------HHHHHHHH
T ss_pred HHHHHHhCcccCCEEEEcCCCCCccc-chHHHHHHHHHHH
Confidence 987432 257999999998865422 2333434444433
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=91.82 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++.+|||||||+|.++..+++. +..+|+++|+|+.+++.++++ +..+++++++|+.+++.+
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFC 91 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChh
Confidence 456677888888888999999999999999999987 248999999999999999876 234799999999988665
Q ss_pred C--CccEEEEccccc
Q 022810 129 A--SYDRIYSIEMFE 141 (291)
Q Consensus 129 ~--~~D~v~~~~~l~ 141 (291)
. ....|+++.+++
T Consensus 92 ~~~~~~~vv~NlPy~ 106 (249)
T 3ftd_A 92 SLGKELKVVGNLPYN 106 (249)
T ss_dssp GSCSSEEEEEECCTT
T ss_pred HccCCcEEEEECchh
Confidence 2 123677777663
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-10 Score=101.17 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CCCCeEEEEccccCC-cc-C-CCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--ELQNVEIIVADISTF-EM-E-ASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~~~i~~~~~d~~~~-~~-~-~~~D~v~~~ 137 (291)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++++... ++++++++++|+.+. .. . ++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 5889999999999999999977 789999999999999999999988 777899999999885 22 1 589999998
Q ss_pred cccc
Q 022810 138 EMFE 141 (291)
Q Consensus 138 ~~l~ 141 (291)
++..
T Consensus 171 PPrr 174 (410)
T 3ll7_A 171 PARR 174 (410)
T ss_dssp CEEC
T ss_pred CCCc
Confidence 7653
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-09 Score=91.70 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--C---CCCeEEEEccccCCccC--CCccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--E---LQNVEIIVADISTFEME--ASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~---~~~i~~~~~d~~~~~~~--~~~D~ 133 (291)
.+.+.+||-||.|.|..++.+.+..+..+|+.||+++..++.+++.+... + .++++++.+|...+... ++||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 45678999999999999999997766679999999999999999887542 2 25899999999987544 78999
Q ss_pred EEEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+....-..- --..++++.+++.|+|||+++....++
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 9986532111 123679999999999999999876554
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-09 Score=85.56 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCC--------------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTF-------------- 125 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~-------------- 125 (291)
+..+|||+|| |..+..+++. ++.+|+.+|.+++..+.|+++++..++ ++++++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 4679999998 4688888864 478999999999999999999999885 4799999996542
Q ss_pred -c--------cC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 -E--------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 -~--------~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+ .. ++||+|+...-. ....+..+.+.|+|||++++..
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEeC
Confidence 1 12 689999998743 2355666779999999997743
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-10 Score=102.90 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=74.1
Q ss_pred CCEEEEEcCCcchHHHHH---HHHC----------CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--
Q 022810 64 GHTVLDVGCGWGSLSLYI---AQKY----------SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-- 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l---~~~~----------p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~-- 127 (291)
+..|||+|||+|.++... ++.. ...+|++||.|+.++..++.... ++. ++|+++.+|++++..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 468999999999996432 2111 13499999999987766555544 666 469999999999876
Q ss_pred ----CCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEE
Q 022810 128 ----EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 128 ----~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~ 164 (291)
++++|+||+-.+=... +-..+.|..+.+.|||||+++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 5899999997653222 334578888889999999854
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.9e-10 Score=94.18 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE--EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK--ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~--v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
..++.+++.+...++.+|||||||+|.++. ++ + +.+ |+++|+++.+++.+++++... ++++++++|+.+++.
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~--~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G--ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H--TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h--CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCH
Confidence 456677777788889999999999999999 65 4 345 999999999999998776432 479999999988754
Q ss_pred CC------CccEEEEccccc
Q 022810 128 EA------SYDRIYSIEMFE 141 (291)
Q Consensus 128 ~~------~~D~v~~~~~l~ 141 (291)
+. ..|.|+++.++.
T Consensus 82 ~~~~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHHHTSCEEEEEECCTT
T ss_pred HHhhcccCCceEEEECCCCC
Confidence 32 346888887763
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.4e-09 Score=98.10 Aligned_cols=109 Identities=10% Similarity=0.034 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC---CCEEEEEcCCHHHHHHH--HHHHHH----hCCCCeEEEEccccCCcc--CCC
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS---NCKITGICNSKTQKEFI--EEQCRV----LELQNVEIIVADISTFEM--EAS 130 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p---~~~v~~vD~s~~~~~~a--~~~~~~----~~~~~i~~~~~d~~~~~~--~~~ 130 (291)
.++.+|||.|||+|.++..+++..+ ..+++|+|+++.+++.| +.++.. .+.+...+...|+..... ..+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4678999999999999999998763 35799999999999999 444433 233334566666665322 278
Q ss_pred ccEEEEccccccc---c--------------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHM---K--------------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~---~--------------------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|++|+++... + -...++..+.+.|+|||++.+..|..
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 9999999998321 0 02347888999999999999987764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=89.43 Aligned_cols=125 Identities=13% Similarity=0.103 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHcCCCC-----CCEEEEEcCCcchHHHHHHH--------HC-------CCCEEEEEcCCHHHHHHHHHHH
Q 022810 48 EKAMLELYCERSRLED-----GHTVLDVGCGWGSLSLYIAQ--------KY-------SNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~--------~~-------p~~~v~~vD~s~~~~~~a~~~~ 107 (291)
...++...++.+...+ ..+|+|+|||+|.++..+.. ++ |..+|...|+........-+.+
T Consensus 32 ~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L 111 (374)
T 3b5i_A 32 MLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLL 111 (374)
T ss_dssp HHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHS
T ss_pred HHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhh
Confidence 3555666666665543 57899999999999888732 22 5678899997776554433322
Q ss_pred HHhC-----------C-CCeEEEEcc---ccCCccC-CCccEEEEcccccccc---------------------------
Q 022810 108 RVLE-----------L-QNVEIIVAD---ISTFEME-ASYDRIYSIEMFEHMK--------------------------- 144 (291)
Q Consensus 108 ~~~~-----------~-~~i~~~~~d---~~~~~~~-~~~D~v~~~~~l~~~~--------------------------- 144 (291)
.... . .+-.|+.+. +-.-.++ +++|+|+|+.++|++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~ 191 (374)
T 3b5i_A 112 PPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK 191 (374)
T ss_dssp CCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH
T ss_pred hhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHH
Confidence 2110 0 011233332 2222334 8999999999999985
Q ss_pred -----------cHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 145 -----------NYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 145 -----------~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
|...+|+...+.|+|||.+++...+..+
T Consensus 192 v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 192 TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 4455788889999999999999988765
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-09 Score=89.51 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
.++..+.++..+.++.+|||||||+|..+..++++.+...++++|++.......... ...+. ++..+..+++.....
T Consensus 61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv~~l~~ 138 (277)
T 3evf_A 61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDIHRLEP 138 (277)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCTTTSCC
T ss_pred HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccceehhcCC
Confidence 345566666667788899999999999999988765445788888874421000000 00011 455566665444444
Q ss_pred CCccEEEEccccc----ccccH--HHHHHHHHhccccC-eeEEEEeec
Q 022810 129 ASYDRIYSIEMFE----HMKNY--QNLLKKISKWMKED-TLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~----~~~~~--~~~l~~~~~~L~pg-G~l~i~~~~ 169 (291)
++||+|+|..+.+ .++.. ..+++.+.++|+|| |.+++..+.
T Consensus 139 ~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 139 VKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 7899999987655 12211 13568889999999 999997775
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-08 Score=88.38 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=90.9
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CCeEEEEccccCCcc--C
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEM--E 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~------~~i~~~~~d~~~~~~--~ 128 (291)
..++.++|.+|||+++|.|+=+.++++..++..|+++|+++..+..++++++..+. .++.+...|...+.. .
T Consensus 142 ~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~ 221 (359)
T 4fzv_A 142 LALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEG 221 (359)
T ss_dssp HHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHST
T ss_pred HHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcc
Confidence 34678899999999999999999999886566899999999999999999987754 368888899877642 2
Q ss_pred CCccEEEEcccccc-----c---c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEH-----M---K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~-----~---~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+.||.|++..+-.. + + -..++|..+.+.|||||+|+-++.+.
T Consensus 222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 78999998664321 0 0 13468889999999999998877654
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.9e-08 Score=89.56 Aligned_cols=146 Identities=15% Similarity=0.126 Sum_probs=103.3
Q ss_pred CCChHHHHHhhCC---CCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-------
Q 022810 16 ELPTSFFKLVLGK---YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY------- 85 (291)
Q Consensus 16 d~~~~~y~~~~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------- 85 (291)
|...+.|+.++.. ... ..|.|-.+ ...++.+++.+...++.+|+|.+||+|.+...+.+..
T Consensus 176 d~lG~~yE~ll~~~~~~~g-~~GqfyTP--------~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~ 246 (530)
T 3ufb_A 176 HTLSRLYETMLREMRDAAG-DSGEFYTP--------RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTV 246 (530)
T ss_dssp HHHHHHHHHHHHHHTTSSS-SCCCCCCC--------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHHHHhcC-cCceECCc--------HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccch
Confidence 4456788888742 111 12333222 3556667777778888999999999999988775431
Q ss_pred ------CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----CCccEEEEcccccccc----------
Q 022810 86 ------SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----ASYDRIYSIEMFEHMK---------- 144 (291)
Q Consensus 86 ------p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~D~v~~~~~l~~~~---------- 144 (291)
....++|+|+++.+...|+-++.-.|.+...+.++|....+.. .+||+|++++++..-.
T Consensus 247 ~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~ 326 (530)
T 3ufb_A 247 EDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPE 326 (530)
T ss_dssp HHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCG
T ss_pred hHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCch
Confidence 1246999999999999999998888886667778887654321 5799999999984221
Q ss_pred ------cHHHHHHHHHhccc-------cCeeEEEEeecc
Q 022810 145 ------NYQNLLKKISKWMK-------EDTLLFVHHFCH 170 (291)
Q Consensus 145 ------~~~~~l~~~~~~L~-------pgG~l~i~~~~~ 170 (291)
....++..+.+.|| |||++.+..|..
T Consensus 327 ~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g 365 (530)
T 3ufb_A 327 DMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG 365 (530)
T ss_dssp GGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred hcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence 12346777777776 799998887753
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=71.22 Aligned_cols=114 Identities=19% Similarity=0.197 Sum_probs=75.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcc-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022810 32 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 32 y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
.+++...... .| .+.+.+.+.+.. .++.+|||||||.| ..+..|++.. +..|+++|+++..++
T Consensus 10 ~~~~~~~~~~-~m---~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~--------- 73 (153)
T 2k4m_A 10 HSSGLVPRGS-HM---WNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG--------- 73 (153)
T ss_dssp CCCCCCCCCC-HH---HHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT---------
T ss_pred ccCCcccchh-hH---HHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc---------
Confidence 3445554332 23 334445555544 35679999999999 5999999744 899999999998543
Q ss_pred CCCCeEEEEccccCCccC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 111 ELQNVEIIVADISTFEME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 111 ~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+++.|+.+.... ..||+|.+..+= ++....+.++.+ +-|.-++|...+.+.
T Consensus 74 ------~v~dDiF~P~~~~Y~~~DLIYsirPP---~El~~~i~~lA~--~v~adliI~pL~~E~ 126 (153)
T 2k4m_A 74 ------IVRDDITSPRMEIYRGAALIYSIRPP---AEIHSSLMRVAD--AVGARLIIKPLTGED 126 (153)
T ss_dssp ------EECCCSSSCCHHHHTTEEEEEEESCC---TTTHHHHHHHHH--HHTCEEEEECBTTBC
T ss_pred ------eEEccCCCCcccccCCcCEEEEcCCC---HHHHHHHHHHHH--HcCCCEEEEcCCCCc
Confidence 788999885544 689999776543 233444444444 246677776555443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-08 Score=85.87 Aligned_cols=118 Identities=22% Similarity=0.281 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
-++..+.++..+.++.+|||||||+|..+..++++.+...|+|+|++..+...+... ...+. ++.....++.....+
T Consensus 77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~~l~~ 154 (282)
T 3gcz_A 77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVFNMEV 154 (282)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGGGSCC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchhhcCC
Confidence 345566666677888999999999999999998765556799999976532111100 00111 333344333322223
Q ss_pred CCccEEEEccccc----ccccH--HHHHHHHHhccccC--eeEEEEeec
Q 022810 129 ASYDRIYSIEMFE----HMKNY--QNLLKKISKWMKED--TLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~----~~~~~--~~~l~~~~~~L~pg--G~l~i~~~~ 169 (291)
.++|+|+|..... .++.. ..+++-+.++|+|| |.|++..+.
T Consensus 155 ~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 155 IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 7899999987665 11111 23577778999999 999998775
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=79.08 Aligned_cols=118 Identities=8% Similarity=0.024 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCH-------------------------
Q 022810 49 KAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSK------------------------- 97 (291)
Q Consensus 49 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-----p~~~v~~vD~s~------------------------- 97 (291)
...+..+++.+. ...+..|||+|+..|..+..++... ++.+|+++|..+
T Consensus 91 ~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~ 170 (282)
T 2wk1_A 91 LENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVL 170 (282)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccc
Confidence 344455554432 2345699999999999999987653 467899999642
Q ss_pred -HHHHHHHHHHHHhCC--CCeEEEEccccCCcc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 98 -TQKEFIEEQCRVLEL--QNVEIIVADISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 98 -~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..++.+++++++.|+ ++|+++.+|+.+... .++||+|+...-. -......++.+...|+|||++++...
T Consensus 171 ~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 171 AVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred hhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 146778999999887 689999999976432 2689999998643 13456789999999999999988554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.4e-08 Score=81.41 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHH-------CCC-----CEEEEEcCCH---HHHH-----------HHHHHHHHh-----
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQK-------YSN-----CKITGICNSK---TQKE-----------FIEEQCRVL----- 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~-------~p~-----~~v~~vD~s~---~~~~-----------~a~~~~~~~----- 110 (291)
.++.+|||+|+|+|..+..+++. .|. .+++++|..+ +.+. .++++....
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35679999999999998887654 453 5899999876 3333 555555431
Q ss_pred ---------CCCCeEEEEccccCCccC--C----CccEEEEccc-cccccc--HHHHHHHHHhccccCeeEEE
Q 022810 111 ---------ELQNVEIIVADISTFEME--A----SYDRIYSIEM-FEHMKN--YQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 111 ---------~~~~i~~~~~d~~~~~~~--~----~~D~v~~~~~-l~~~~~--~~~~l~~~~~~L~pgG~l~i 165 (291)
+..+++++.+|+.+.... . .||+|+.... -...++ ...+++.+.+.|+|||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 113678999998773221 2 7999999642 111222 36799999999999999875
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.2e-08 Score=84.94 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=74.7
Q ss_pred CCEEEEEcCCcchHHHHHHHH-----------------CCCCEEEEEcCC-----------HHHHHHHHHHHHHhCC-CC
Q 022810 64 GHTVLDVGCGWGSLSLYIAQK-----------------YSNCKITGICNS-----------KTQKEFIEEQCRVLEL-QN 114 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~-----------------~p~~~v~~vD~s-----------~~~~~~a~~~~~~~~~-~~ 114 (291)
..+|+|+||++|.++..+... .|..+|...|+. +...+.++ +..+. .+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 578999999999999888765 255788999976 33322221 12221 13
Q ss_pred eEEEEccccCC---ccC-CCccEEEEcccccccccHH---------------------------------------HHHH
Q 022810 115 VEIIVADISTF---EME-ASYDRIYSIEMFEHMKNYQ---------------------------------------NLLK 151 (291)
Q Consensus 115 i~~~~~d~~~~---~~~-~~~D~v~~~~~l~~~~~~~---------------------------------------~~l~ 151 (291)
..|+.+....+ .++ +++|+|+++.++||+.+.+ .+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666655442 344 8999999999999984332 1266
Q ss_pred HHHhccccCeeEEEEeeccCCc
Q 022810 152 KISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 152 ~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
...+.|+|||.+++...+..+.
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHhccCCeEEEEEecCCCc
Confidence 6689999999999999987664
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.57 E-value=9.3e-08 Score=80.45 Aligned_cols=84 Identities=8% Similarity=0.093 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--- 127 (291)
+++.+++.+.+.++..+||.+||.|.++..++++ +.+|+|+|.++.+++.+++ +.. ++++++++++.++..
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~ 83 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLA 83 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHH
Confidence 4567777788888999999999999999999987 7899999999999999887 533 489999999988642
Q ss_pred --C-CCccEEEEcccc
Q 022810 128 --E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 --~-~~~D~v~~~~~l 140 (291)
. .++|.|+++..+
T Consensus 84 ~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 84 ALGVERVDGILADLGV 99 (285)
T ss_dssp HTTCSCEEEEEEECSC
T ss_pred HcCCCCcCEEEeCCcc
Confidence 1 579999987654
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-07 Score=80.91 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-----CC---CCeEEEEccccCCcc-----C
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-----EL---QNVEIIVADISTFEM-----E 128 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-----~~---~~i~~~~~d~~~~~~-----~ 128 (291)
.++.+||-||.|.|..++.+.+. |..+|+.||+++..++.+++.+... .. ++++++.+|+..+.. .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999875 5689999999999999999865321 11 358999999876532 2
Q ss_pred CCccEEEEccccccc----------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHM----------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~----------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++||+|+....-... .-..++++.+++.|+|||+++.+.-
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 689999987432110 1135788999999999999987643
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.8e-08 Score=83.75 Aligned_cols=111 Identities=11% Similarity=0.026 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHH----------------CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC-
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQK----------------YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST- 124 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~----------------~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~- 124 (291)
...+|+|+||++|.++..+... .|..+|+..|+..+....+-+.+..... ++..|+.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999887765443 3557899999888877666554432100 123455554433
Q ss_pred --CccC-CCccEEEEccccccccc---------------------------------HHHHHHHHHhccccCeeEEEEee
Q 022810 125 --FEME-ASYDRIYSIEMFEHMKN---------------------------------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 125 --~~~~-~~~D~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
-.++ +++|+|+|+.++||+.+ ...+|+...+.|+|||.+++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 3344 89999999999999843 23358888999999999999999
Q ss_pred ccCCc
Q 022810 169 CHKTF 173 (291)
Q Consensus 169 ~~~~~ 173 (291)
+..+.
T Consensus 211 gr~~~ 215 (359)
T 1m6e_X 211 GRRSE 215 (359)
T ss_dssp ECSSS
T ss_pred cCCCC
Confidence 88664
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=75.69 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
+.+|+++|||||.+|+.+..++++ +.+|++||+.+-. ..+.. .++|+++++|+....++ .++|+|+|..+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-----~~l~~--~~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-----QSLMD--TGQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-----HHHHT--TTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-----hhhcc--CCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 568999999999999999999988 8899999976421 11222 24799999999988766 78999999765
Q ss_pred ccccccHHHHHHHHHhcccc
Q 022810 140 FEHMKNYQNLLKKISKWMKE 159 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~p 159 (291)
. ++...+..+.+.|..
T Consensus 280 ~----~p~~~~~l~~~wl~~ 295 (375)
T 4auk_A 280 E----KPAKVAALMAQWLVN 295 (375)
T ss_dssp S----CHHHHHHHHHHHHHT
T ss_pred C----ChHHhHHHHHHHHhc
Confidence 5 334444444444433
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-06 Score=70.17 Aligned_cols=118 Identities=20% Similarity=0.296 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~~~~ 128 (291)
.++..+.++..+.++.+||||||++|..+.+++.......|+|+|+...-.+. -......+.+-+.++.+ |+..++.
T Consensus 81 ~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~~- 158 (321)
T 3lkz_A 81 AKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRPS- 158 (321)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSCC-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCCC-
Confidence 45666777777788899999999999999988877534469999987651100 00001112223788887 8877654
Q ss_pred CCccEEEEcccccccccH-------HHHHHHHHhccccC-eeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEHMKNY-------QNLLKKISKWMKED-TLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~-------~~~l~~~~~~L~pg-G~l~i~~~~~ 170 (291)
.++|+|+|.-. +.-+++ -.+|+-+.+.|++| |-+++-.+++
T Consensus 159 ~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 159 ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 67999999765 333321 22666667889988 8888877765
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=67.99 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
++..+.++--+.++.+||||||++|..+..++++.+...|+|+|+...+...... ....+. ++.....++...... .
T Consensus 69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~~~ 146 (300)
T 3eld_A 69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMPTE 146 (300)
T ss_dssp HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSCCC
T ss_pred HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecCCC
Confidence 3444445533468899999999999999999986544579999987532100000 000011 333333333222223 7
Q ss_pred CccEEEEcccccccc----c---HHHHHHHHHhccccC-eeEEEEeec
Q 022810 130 SYDRIYSIEMFEHMK----N---YQNLLKKISKWMKED-TLLFVHHFC 169 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~----~---~~~~l~~~~~~L~pg-G~l~i~~~~ 169 (291)
++|+|+|...-. .. | ...++.-+.++|+|| |.|++..+.
T Consensus 147 ~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 147 PSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 899999976554 21 1 134577778999999 999998775
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.23 E-value=5e-06 Score=71.42 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~ 111 (291)
.++..++.... .++..|||++||+|..+..+++. +.+++|+|+++.+++.|++++....
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 45566666555 67889999999999999998876 7899999999999999999987753
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-06 Score=68.86 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~~~~ 128 (291)
-++..+.++..+.++.+||||||++|..+.+++......+|+|+|+-..-.+. -......|.+.++|+.+ |+...+.
T Consensus 65 ~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~- 142 (267)
T 3p8z_A 65 AKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP- 142 (267)
T ss_dssp HHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC-
T ss_pred HHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC-
Confidence 45666777667789999999999999999988877644579999987652210 00111234456999999 9866544
Q ss_pred CCccEEEEccccccc-c--cH---HHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 ASYDRIYSIEMFEHM-K--NY---QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~-~--~~---~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.++|.|+|.-.=..- + +. -.+|+-+.++|++ |-+++-.+++.
T Consensus 143 ~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py 190 (267)
T 3p8z_A 143 EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY 190 (267)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence 779999996422111 1 11 2266667889998 78888776553
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-06 Score=70.92 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEc-cccCCcc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVA-DISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-~~~~~i~~~~~-d~~~~~~ 127 (291)
-++..+-++.-++++.+||||||+.|..+..++++.+-..|.|.++.... . ....... .|+.-+.++++ |+.++.
T Consensus 60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~- 136 (269)
T 2px2_A 60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKP- 136 (269)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSC-
T ss_pred HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCC-
Confidence 34556666655688999999999999999999876211133344333220 0 0000000 11112356557 998743
Q ss_pred CCCccEEEEccccc-cc--ccHH---HHHHHHHhccccCe-eEEEEeec
Q 022810 128 EASYDRIYSIEMFE-HM--KNYQ---NLLKKISKWMKEDT-LLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~v~~~~~l~-~~--~~~~---~~l~~~~~~L~pgG-~l~i~~~~ 169 (291)
+.++|+|+|...=. .. -|.. .++.-+.++|+||| .+++-.+.
T Consensus 137 ~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 137 SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 35899999976322 11 1222 25666778999999 89887776
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=8.7e-06 Score=70.08 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
.+++.+++.+.+.++..++|..||.|..+..++++. |..+|+|+|.++.+++.++ ++ ..++++++++++.++..
T Consensus 44 VLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 44 VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEY 119 (347)
T ss_dssp TTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHH
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHH
Confidence 367788888999999999999999999999999875 6789999999999998884 32 22589999999887631
Q ss_pred ----C--CCccEEEEccccc
Q 022810 128 ----E--ASYDRIYSIEMFE 141 (291)
Q Consensus 128 ----~--~~~D~v~~~~~l~ 141 (291)
. +++|.|+.+.-+.
T Consensus 120 L~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 120 VAERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp HHHTTCTTCEEEEEEECSCC
T ss_pred HHhcCCCCcccEEEECCccC
Confidence 1 2689998876553
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.83 E-value=4.6e-06 Score=70.22 Aligned_cols=103 Identities=12% Similarity=-0.004 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~ 137 (291)
.+..+||+-+|+|.+++.+.+. +.+++.+|.++..++..++++.. .++++++..|..... .+ .+||+|++.
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiD 166 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFID 166 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEEC
T ss_pred cCCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEEC
Confidence 3567999999999999999874 78999999999999888888754 247999999975521 22 579999999
Q ss_pred ccccccccHHHHHHHHHh--ccccCeeEEEEeec
Q 022810 138 EMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~ 169 (291)
+++..-.+...+++.+.+ .+.|+|++++=.|.
T Consensus 167 PPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 167 PSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 999755567777776655 45699998885443
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.83 E-value=5e-05 Score=66.44 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCC------CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022810 49 KAMLELYCERSRLED------GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~------~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~ 122 (291)
...++.+++.+++.+ +..|||||.|.|.++..|++.....+|+++|+++..+...++.. . .++++++.+|+
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~ 114 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDP 114 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCT
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCc
Confidence 455667777776653 58999999999999999998643468999999999998888766 2 35899999999
Q ss_pred cCC
Q 022810 123 STF 125 (291)
Q Consensus 123 ~~~ 125 (291)
.++
T Consensus 115 l~~ 117 (353)
T 1i4w_A 115 YDW 117 (353)
T ss_dssp TCH
T ss_pred cch
Confidence 665
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.82 E-value=9.1e-05 Score=62.16 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=68.5
Q ss_pred CCCCCCEEEEEcC------CcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 60 RLEDGHTVLDVGC------GWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGc------G~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
..+.+++|||+|+ -.|. ..+.+..|. ..|+++|+.+-.. ... .++++|+.......+||
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~~~~k~D 171 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVHTANKWD 171 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEEESSCEE
T ss_pred eecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEccccccccCCCCC
Confidence 4567999999996 4566 345555664 6999999977420 113 45999987765558899
Q ss_pred EEEEcccccc---c--c------cHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 133 RIYSIEMFEH---M--K------NYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 133 ~v~~~~~l~~---~--~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+|+|...-.. . . -.+.++.-+.+.|+|||.|++-.+....
T Consensus 172 LVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 172 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp EEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred EEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 9999653211 1 1 1355677788899999999998765443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.79 E-value=5.2e-05 Score=63.71 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~ 111 (291)
.++..+++... .++..|||..||+|..+....+. +.+++|+|+++..++.++++++..+
T Consensus 200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 45566665543 67889999999999999998877 8899999999999999999987654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.5e-05 Score=84.21 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-----CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c-cCCCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS-----NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E-MEASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~D~v 134 (291)
.+..+|||||.|+|..+..+.+... ..+++..|+|+...+.++++++.. ++.....|..+. . .++.||+|
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC-----CCEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccCCCCceeEE
Confidence 3578999999999987776665532 237899999998888888777654 233322233322 1 22679999
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++..++|..++....+.+++++|||||.+++...
T Consensus 1316 ia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1316 VCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp EEECC--------------------CCEEEEEEC
T ss_pred EEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999998888889999999999999999888654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0055 Score=53.20 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---------------------CCCeEEEEc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------------------LQNVEIIVA 120 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~---------------------~~~i~~~~~ 120 (291)
.+...|+.||||.......+....++..++-||. |..++.-++.+.+.+ -++..++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 3567999999999999999987766788888888 888877777666541 147889999
Q ss_pred cccCCcc---------C-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 121 DISTFEM---------E-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 121 d~~~~~~---------~-~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+.+... . ....++++-.++.++ +....+++.+.+.. |+|.+++.+.
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~ 233 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDP 233 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence 9987321 2 456889999999999 44667888888766 7777654443
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0022 Score=57.34 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHH-HHCCC-CEEEEEcCCHHHHHHHHHHHHH---hCC-CCeEEEEccccC
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIA-QKYSN-CKITGICNSKTQKEFIEEQCRV---LEL-QNVEIIVADIST 124 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~-~~~p~-~~v~~vD~s~~~~~~a~~~~~~---~~~-~~i~~~~~d~~~ 124 (291)
+.++..|+|+|++.|..+..++ +..+. .+|+++|+++...+.++++... ++. ++++++..-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 4688999999999999999988 55543 7999999999999999999987 345 578887776655
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0052 Score=51.14 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=75.3
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-------CCCCEEEEEc-----CCHH-------------------HHHH
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGIC-----NSKT-------------------QKEF 102 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------~p~~~v~~vD-----~s~~-------------------~~~~ 102 (291)
.+.+.+...+| .|+|+||-.|..+..+++. .+..+|+++| +.+. ..+.
T Consensus 61 ~l~~~i~~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~ 139 (257)
T 3tos_A 61 ALYRQVLDVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAY 139 (257)
T ss_dssp HHHHHTTTSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHH
T ss_pred HHHHHhhCCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHH
Confidence 34444433344 8999999999988887652 2457899999 3211 0111
Q ss_pred HHHHH------HHhCC--CCeEEEEccccCCcc------C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 103 IEEQC------RVLEL--QNVEIIVADISTFEM------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 103 a~~~~------~~~~~--~~i~~~~~d~~~~~~------~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.++.+ +..+. ++++++.+++.+... + .++|+|....-. -......++.+...|+|||++++..
T Consensus 140 l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 140 LKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp HHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcC
Confidence 12111 12233 579999999987421 2 469999998742 2445668899999999999999977
Q ss_pred ecc
Q 022810 168 FCH 170 (291)
Q Consensus 168 ~~~ 170 (291)
.+.
T Consensus 218 ~~~ 220 (257)
T 3tos_A 218 LDN 220 (257)
T ss_dssp TTC
T ss_pred CCC
Confidence 643
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.003 Score=55.07 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=67.6
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+....++++.+||-+|+|. |..+..+++.. +++|++++.+++..+.+++ .|.+.+ + .+...+. ..+|+|
T Consensus 169 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v--~-~~~~~~~--~~~D~v 238 (348)
T 3two_A 169 LKFSKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS----MGVKHF--Y-TDPKQCK--EELDFI 238 (348)
T ss_dssp HHHTTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH----TTCSEE--E-SSGGGCC--SCEEEE
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh----cCCCee--c-CCHHHHh--cCCCEE
Confidence 3456788999999999975 78888888876 7899999999987776643 454322 2 3332222 378998
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+-...- ...+..+.+.|+|+|.+++.
T Consensus 239 id~~g~------~~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 239 ISTIPT------HYDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EECCCS------CCCHHHHHTTEEEEEEEEEC
T ss_pred EECCCc------HHHHHHHHHHHhcCCEEEEE
Confidence 864332 12467788899999998774
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00023 Score=61.74 Aligned_cols=72 Identities=13% Similarity=0.018 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.++..+++.. ..++..|||..||+|..+....+. +.+++|+|+++..++.+++++...+. ....++.|+.++
T Consensus 240 ~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~i 311 (323)
T 1boo_A 240 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNNI-SEEKITDIYNRI 311 (323)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhccc-chHHHHHHHHHH
Confidence 3445555443 467889999999999999998876 88999999999999999988765543 334444555443
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.017 Score=49.49 Aligned_cols=104 Identities=7% Similarity=0.018 Sum_probs=76.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc---------C-CC
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM---------E-AS 130 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~~~---------~-~~ 130 (291)
...|++||||.=.....+.. .++.+++-|| .|..++..++.+.+.+. ++..++.+|+.+ .. . ..
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA 179 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred CCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence 35799999997766444431 1247899999 59999988888876432 368889999986 21 1 23
Q ss_pred ccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.-++++-.++++++ +...+++.+.+.+.||+.+++.....
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 45788888999984 45679999999889999998876543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0073 Score=53.33 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=56.1
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------CCCccEE
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------EASYDRI 134 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------~~~~D~v 134 (291)
.+++|+.||.|.++..+.+. |.+ +.++|+++.+++..+.|. ++..++++|+.++.. ...+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999999887 665 669999999877776653 256778899987632 2579999
Q ss_pred EEccccccc
Q 022810 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+..++-+.+
T Consensus 76 ~ggpPCQ~f 84 (376)
T 3g7u_A 76 IGGPPCQGF 84 (376)
T ss_dssp EECCCCCTT
T ss_pred EecCCCCCc
Confidence 998764433
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0068 Score=53.28 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=67.4
Q ss_pred HHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------
Q 022810 55 YCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------ 126 (291)
+.+...++++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+. ++..+-.++.
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQ----LGATH--VINSKTQDPVAAIKEI 254 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCCE--EecCCccCHHHHHHHh
Confidence 33556778999999999985 88888888776 66 79999999997777653 34421 2221111110
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+.+|+|+-.... ...++.+.+.|+|+|++++.
T Consensus 255 ~~gg~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 255 TDGGVNFALESTGS------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp TTSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEe
Confidence 01368988864321 35678889999999998764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.006 Score=54.26 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=68.1
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c------c
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~------~ 127 (291)
+...++++.+||-+|||. |..+..+++.. ++ +|+++|.+++.++.++ +.|. .++..+-.+. . .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa---~~i~~~~~~~~~~~~~~~~ 250 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLS----DAGF---ETIDLRNSAPLRDQIDQIL 250 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHH----TTTC---EEEETTSSSCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCC---cEEcCCCcchHHHHHHHHh
Confidence 556788999999999986 88888888876 67 9999999998776654 3443 2332211111 1 0
Q ss_pred C-CCccEEEEccccccc--------ccHHHHHHHHHhccccCeeEEEE
Q 022810 128 E-ASYDRIYSIEMFEHM--------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~--------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. ..+|+|+-...-... ......++.+.+.|+++|++++.
T Consensus 251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 1 369999865432210 01234688888999999998764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.011 Score=52.43 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=69.3
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc------c
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~------~ 127 (291)
....++++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|. ..+...-.+ +. .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~v~~~t 250 (398)
T 1kol_A 179 VTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKA----QGF---EIADLSLDTPLHEQIAALL 250 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH----TTC---EEEETTSSSCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHH----cCC---cEEccCCcchHHHHHHHHh
Confidence 456788999999999875 88888888876 66 79999999987776643 454 222211111 10 1
Q ss_pred C-CCccEEEEccccc---------ccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 E-ASYDRIYSIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. ..+|+|+-...-. +.++....++.+.++|+++|.+++.
T Consensus 251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 1 3689998654321 2233455788899999999998764
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0036 Score=54.20 Aligned_cols=71 Identities=15% Similarity=0.102 Sum_probs=55.0
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
+.+++|+.||.|.++..+.+. |. .+.++|+++.+++..+.+.... . ++|+.++... ..+|+|+..++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~~~~~~~~D~l~~gpPC 81 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVNEKTIPDHDILCAGFPC 81 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSCGGGSCCCSEEEEECCC
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcCHhhCCCCCEEEECCCC
Confidence 579999999999999999876 55 4778999999988888776321 1 6888876533 569999998765
Q ss_pred ccc
Q 022810 141 EHM 143 (291)
Q Consensus 141 ~~~ 143 (291)
+.+
T Consensus 82 Q~f 84 (327)
T 2c7p_A 82 QAF 84 (327)
T ss_dssp TTT
T ss_pred CCc
Confidence 444
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0057 Score=53.52 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=66.3
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---ccCC----c-
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---ISTF----E- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d---~~~~----~- 126 (291)
+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.++ +.|.+. ++..+ -.+. .
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~~i~~ 237 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGADL--VLQISKESPQEIARKVEG 237 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSE--EEECSSCCHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCE--EEcCcccccchHHHHHHH
Confidence 556788999999999985 88888888876 77 9999999998766654 345432 22211 0111 0
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
....+|+|+-.... ...+....+.|+|+|++++.
T Consensus 238 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 238 QLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred HhCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEE
Confidence 01468998865321 34677888999999998764
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.013 Score=50.87 Aligned_cols=98 Identities=8% Similarity=0.093 Sum_probs=67.6
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CC
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EA 129 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~~ 129 (291)
++...+.++.+||-+|+|. |..+..+++.. +++|+++|.+++.++.+++ .|.+. ++..+-.+... .+
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~~~~g 231 (340)
T 3s2e_A 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAEV--AVNARDTDPAAWLQKEIG 231 (340)
T ss_dssp HHTTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHHS
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCCE--EEeCCCcCHHHHHHHhCC
Confidence 3556778999999999984 88888998876 8899999999997776643 45421 22211111110 13
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+.... ....++.+.+.|+|+|.+++.
T Consensus 232 ~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 232 GAHGVLVTAV------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SEEEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEeCC------CHHHHHHHHHHhccCCEEEEe
Confidence 6888876432 245678888999999998764
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0024 Score=55.78 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=55.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~---~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~D~v~~ 136 (291)
..+|+|+.||.|.++..+.+. | ..|.++|+++.+++..+.|+. +..++.+|+.++... ..+|+|+.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~--G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRES--CIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCeEEEeCcCccHHHHHHHHC--CCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEE
Confidence 358999999999999999887 5 258999999998888877653 345678999886532 26999999
Q ss_pred cccccc
Q 022810 137 IEMFEH 142 (291)
Q Consensus 137 ~~~l~~ 142 (291)
.++-+.
T Consensus 75 gpPCq~ 80 (343)
T 1g55_A 75 SPPCQP 80 (343)
T ss_dssp CCC---
T ss_pred cCCCcc
Confidence 887433
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.01 Score=52.03 Aligned_cols=101 Identities=15% Similarity=0.036 Sum_probs=68.8
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-----ccccC----
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIV-----ADIST---- 124 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~-----~d~~~---- 124 (291)
++...++++.+||-+|+|. |..+..+++.. +++ |+++|.+++.++.+++. .. .-+.+.. .|+.+
T Consensus 172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~---~~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CP---EVVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp HHHHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CT---TCEEEECCSCCHHHHHHHHHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-ch---hcccccccccchHHHHHHHHH
Confidence 3566788999999999974 78888888876 776 99999999988888764 11 1122221 11111
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 125 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
......+|+|+-... ....+..+.+.|+++|.+++..
T Consensus 247 ~t~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 247 SFGGIEPAVALECTG------VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HTSSCCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECC
T ss_pred HhCCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEc
Confidence 011246999886432 1346788889999999987743
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.024 Score=49.76 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=67.0
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE---ccccC-C-----
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIV---ADIST-F----- 125 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~---~d~~~-~----- 125 (291)
+...++++.+||-+|+|. |..+..+++.. ++ +|+++|.+++..+.+++ .|.+. ++. .|+.+ .
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~i~~~~~ 248 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAEE----VGATA--TVDPSAGDVVEAIAGPVG 248 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTCSE--EECTTSSCHHHHHHSTTS
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCCE--EECCCCcCHHHHHHhhhh
Confidence 566788999999999974 78888888876 66 89999999987766654 45421 111 11111 0
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+.+|+|+-... ....++.+.+.|++||.+++.
T Consensus 249 ~~~gg~Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 249 LVPGGVDVVIECAG------VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp SSTTCEEEEEECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ccCCCCCEEEECCC------CHHHHHHHHHHhccCCEEEEE
Confidence 01146899886432 145678888999999998774
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.016 Score=50.47 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=66.1
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-ccCCc-------c
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-ISTFE-------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-~~~~~-------~ 127 (291)
+...++++.+||-+|+|. |..+..+++.. +++|+++|.+++.++.++ +.|.+. ++..+ -.+.. .
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~--~~~~~~~~~~~~~i~~~~~ 234 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAK----NCGADV--TLVVDPAKEEESSIIERIR 234 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCSE--EEECCTTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH----HhCCCE--EEcCcccccHHHHHHHHhc
Confidence 556788999999999874 77888888776 788999999998776664 345431 22211 01110 0
Q ss_pred ---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 ---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+|+|+-.... ...++.+.+.|+|+|.+++.
T Consensus 235 ~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 235 SAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred cccCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 2358998865322 34577888999999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0057 Score=52.74 Aligned_cols=60 Identities=17% Similarity=-0.011 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCH---HHHHHHHHHHHHhC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK---TQKEFIEEQCRVLE 111 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~---~~~~~a~~~~~~~~ 111 (291)
..++..++... ..++..|||.-||+|..+....+. +.+.+|+|+++ ..++.+++++...+
T Consensus 229 ~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 229 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 34555666544 367889999999999999999988 88999999999 99999988876554
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0073 Score=53.15 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=65.4
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c-cCCCcc
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E-MEASYD 132 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~D 132 (291)
+....++++.+||-+|+|. |..+..+++.. +++|++++.+++.++.+++ .|.+. ++...-.+. . ....+|
T Consensus 187 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~~g~D 259 (369)
T 1uuf_A 187 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGADE--VVNSRNADEMAAHLKSFD 259 (369)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSE--EEETTCHHHHHTTTTCEE
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcE--EeccccHHHHHHhhcCCC
Confidence 3445788999999999984 77888888776 8899999999988777654 34422 221110010 0 014689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+-...- ...++.+.+.|+|+|.++..
T Consensus 260 vvid~~g~------~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 260 FILNTVAA------PHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEEECCSS------CCCHHHHHTTEEEEEEEEEC
T ss_pred EEEECCCC------HHHHHHHHHHhccCCEEEEe
Confidence 98865332 12356778899999997763
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.024 Score=49.15 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=65.0
Q ss_pred HHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------c
Q 022810 55 YCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 127 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~ 127 (291)
........++.+||-.|+|. |..+..+++......++++|.+++.++.++ +.|.+ ..+...-.+.. .
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~----~lGa~--~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK----SFGAM--QTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS--EEEETTTSCHHHHHHHHG
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH----HcCCe--EEEeCCCCCHHHHHHhhc
Confidence 44566778999999999974 567777777763346789999998766654 34542 22221111110 1
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. ..+|+|+.... ....++...++|+++|.+++.
T Consensus 226 ~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 226 ELRFNQLILETAG------VPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp GGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEEC
T ss_pred ccCCccccccccc------ccchhhhhhheecCCeEEEEE
Confidence 1 45787765432 245678888999999998774
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.022 Score=49.08 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=54.6
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~ 141 (291)
++|+|+-||.|.++.-+.+. |.+ +.++|+++.+++..+.+. .-.++.+|+.++... ...|+++..++-+
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPSQ 72 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC------CSEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC------CCCcccCChhhCCHhhCCcccEEEecCCCC
Confidence 47999999999999998876 565 569999999877766653 235788999887544 6789999877544
Q ss_pred cc
Q 022810 142 HM 143 (291)
Q Consensus 142 ~~ 143 (291)
.+
T Consensus 73 ~f 74 (331)
T 3ubt_Y 73 SW 74 (331)
T ss_dssp GT
T ss_pred Cc
Confidence 33
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=49.58 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=71.4
Q ss_pred ccCCCCCCHHHHHHHHHHH--HHHHcCCCCCCEEEEEcCCcchHHHHHH----HHCCCCE--EEEEcCCH--------H-
Q 022810 36 YFSDASKTLEDAEKAMLEL--YCERSRLEDGHTVLDVGCGWGSLSLYIA----QKYSNCK--ITGICNSK--------T- 98 (291)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~vLDiGcG~G~~~~~l~----~~~p~~~--v~~vD~s~--------~- 98 (291)
|++.....+.++....+.- +.++....+.-+|||+|-|+|.+..... +..|..+ ++.+|..+ .
T Consensus 67 YhS~~~GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~ 146 (308)
T 3vyw_A 67 YHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEP 146 (308)
T ss_dssp SSCTTTCHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTT
T ss_pred cCCCCCcHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHh
Confidence 3443333455555443321 2222222345689999999998764432 2345554 56666421 1
Q ss_pred HHHHHHHHHHHhC---CC--CeEEEEccccCCcc--C-CCccEEEEcccccccccH----HHHHHHHHhccccCeeEEE
Q 022810 99 QKEFIEEQCRVLE---LQ--NVEIIVADISTFEM--E-ASYDRIYSIEMFEHMKNY----QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 99 ~~~~a~~~~~~~~---~~--~i~~~~~d~~~~~~--~-~~~D~v~~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i 165 (291)
.-+.......... .. .+++..+|+.+... . .++|+|+..+ +.--.++ ..+++.+.++++|||++.-
T Consensus 147 ~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 147 YREIHEFLLERVPEYEGERLSLKVLLGDARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp SHHHHHHHHHHCSEEECSSEEEEEEESCHHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHhCccccCCcEEEEEEechHHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 1111222222211 12 35678899876432 2 4799999865 2222222 6799999999999998764
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.012 Score=51.29 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=67.2
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------- 126 (291)
++...++++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+ .++..+-.++.
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 159 AELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALE----YGAT--DIINYKNGDIVEQILKAT 231 (352)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHH----HTCC--EEECGGGSCHHHHHHHHT
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCc--eEEcCCCcCHHHHHHHHc
Confidence 3667788999999999984 77888888765 66 89999999987766654 4442 12221111111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+|+|+-...- ...+..+.+.|+|+|.++...
T Consensus 232 ~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 232 DGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEec
Confidence 11369999864321 246778888999999987753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.021 Score=45.15 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------- 126 (291)
+...+.++.+||..|+ |.|..+..+++.. +.+|+++|.+++..+.++ +.+.+ . .+ |..+..
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~-~-~~--d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVE-Y-VG--DSRSVDFADEILEL 102 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCS-E-EE--ETTCSTHHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCC-E-Ee--eCCcHHHHHHHHHH
Confidence 3456788999999994 4566666666554 789999999988665543 23432 1 11 322211
Q ss_pred c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. ...+|+|+.+.. ...++.+.+.|+|+|++++.
T Consensus 103 ~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 103 TDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence 1 135899986542 24678888999999998764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.015 Score=51.10 Aligned_cols=95 Identities=9% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----Cc----
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FE---- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~----~~---- 126 (291)
+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+. ++ |..+ +.
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi--~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKV----FGATD--FV--NPNDHSEPISQVLS 256 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----TTCCE--EE--CGGGCSSCHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----hCCce--EE--eccccchhHHHHHH
Confidence 456778899999999874 77888888876 76 89999999987776653 44421 12 2211 11
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
..+.+|+|+-.... ...+..+.+.|+++ |.+++.
T Consensus 257 ~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 257 KMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEE
Confidence 01368998864321 35678889999999 998764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.013 Score=50.84 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cCCCc
Q 022810 60 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------MEASY 131 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~ 131 (291)
.+.++.+||-+|+|. |..+..+++...+.+|+++|.+++.++.+++ .|.+. ++..+- +.. ....+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~-~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA--AVKSGA-GAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE--EEECST-THHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE--EEcCCC-cHHHHHHHHhCCCCC
Confidence 567899999999975 7888888877546899999999997776643 45432 221111 111 11368
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|+-.-.- ...++.+.+.|+++|.+++..
T Consensus 241 d~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 241 TAVFDFVGA------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred eEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence 988864321 347888899999999987753
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=51.34 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=65.9
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-c-cCCc-----
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-I-STFE----- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-~-~~~~----- 126 (291)
.+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.++ +.|.+. ++..+ . .++.
T Consensus 184 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 184 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAI----ELGATE--CLNPKDYDKPIYEVICE 256 (373)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHH----HTTCSE--EECGGGCSSCHHHHHHH
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCcE--EEecccccchHHHHHHH
Confidence 3456778999999999874 77888888776 66 8999999998777665 345421 22111 0 1110
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
..+.+|+|+-...- ...+..+.+.|+++ |.+++.
T Consensus 257 ~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 257 KTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEE
Confidence 01368998864321 35678888999999 998764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.021 Score=48.90 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
+...++++.+||-+|+| .|..+..+++.. +++|++++ +++..+.+++ .|.+ .++ .|...+ ...+|+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~----lGa~--~v~-~d~~~v--~~g~Dvv~ 204 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAK----RGVR--HLY-REPSQV--TQKYFAIF 204 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHH----HTEE--EEE-SSGGGC--CSCEEEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHH----cCCC--EEE-cCHHHh--CCCccEEE
Confidence 56677899999999997 478888888876 78999999 8887776654 4432 122 242222 46789888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
-...- ..+..+.+.|+|+|.++..
T Consensus 205 d~~g~-------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 205 DAVNS-------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp CC--------------TTGGGEEEEEEEEEE
T ss_pred ECCCc-------hhHHHHHHHhcCCCEEEEE
Confidence 54221 1235677899999998775
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.018 Score=50.64 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=65.9
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cc-cCCc-----
Q 022810 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DI-STFE----- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~-~~~~----- 126 (291)
.+...+.++.+||-+|+| .|..+..+++.. ++ +|+++|.+++.++.++ +.|.+. ++.. +. .++.
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 188 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAK----ALGATD--CLNPRELDKPVQDVITE 260 (376)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSE--EECGGGCSSCHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCcE--EEccccccchHHHHHHH
Confidence 345677889999999987 477888888876 77 8999999998776664 345421 1211 10 1110
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
..+.+|+|+-...- ...++.+.+.|+++ |.+++.
T Consensus 261 ~~~~g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 261 LTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCccEEEECCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence 01368988864321 35678889999999 998764
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.031 Score=48.21 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=63.6
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC---Cc-----
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---FE----- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~---~~----- 126 (291)
+...+.++.+||-.|| |.|..+..+++.. +++|+++|.+++.++.++ +.+.+ .. .|..+ ..
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~-~~---~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFD-AA---FNYKTVNSLEEALKK 209 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCS-EE---EETTSCSCHHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----hcCCc-EE---EecCCHHHHHHHHHH
Confidence 4557788999999998 5677777777665 789999999988766653 23432 11 23322 10
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+.+|+++.+..- ..+..+.+.|+++|.+++.
T Consensus 210 ~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 210 ASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEE
Confidence 01368998876432 3477888999999998764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.017 Score=50.68 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=65.4
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cc-cCCc------
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DI-STFE------ 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~-~~~~------ 126 (291)
+...++++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+. ++.. +. .++.
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKE----FGATE--CINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCce--EeccccccccHHHHHHHH
Confidence 456778899999999874 77788888776 66 89999999998777653 35421 1211 10 1110
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
..+.+|+|+-.... ...++.+.+.|+++ |.+++.
T Consensus 257 ~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 257 TDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp TTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEE
Confidence 01368998865321 35678888999999 998764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.94 E-value=0.021 Score=50.19 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=65.2
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc--cCCc------
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADI--STFE------ 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~--~~~~------ 126 (291)
+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.++ +.|.+. ++..+- .++.
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAK----EVGATE--CVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHH----HTTCSE--EECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCce--EecccccchhHHHHHHHH
Confidence 456778999999999874 77888888876 76 8999999998777664 344421 121110 1110
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
..+.+|+|+-...- ...+..+.+.|+++ |.+++.
T Consensus 258 ~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 258 SNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp TTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred hCCCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEe
Confidence 01368988865321 35678888999999 998764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.063 Score=46.44 Aligned_cols=95 Identities=11% Similarity=0.108 Sum_probs=65.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C--
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-- 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~-- 128 (291)
....+.++.+||-+|+| .|..+..+++.. +++|++++.+++.++.+++ .|.+. + .|..+... .
T Consensus 158 ~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--~--~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 158 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGADL--V--VNPLKEDAAKFMKEKV 228 (339)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCSE--E--ECTTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----CCCCE--E--ecCCCccHHHHHHHHh
Confidence 34477889999999986 477778888776 7899999999987776643 44421 1 23221110 0
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+..... ...++.+.+.|+++|.++..
T Consensus 229 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 229 GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 368988865332 34678888999999998764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.023 Score=49.32 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc----cc-cCCccCCCcc
Q 022810 60 RLEDGHTVLDVGCGW-GSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DI-STFEMEASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~----d~-~~~~~~~~~D 132 (291)
.+ ++.+||-+|+|. |..+..+++.. |+++|++++.+++.++.+++ .|.+. ++.. |. ........+|
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADY--VSEMKDAESLINKLTDGLGAS 240 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSE--EECHHHHHHHHHHHHTTCCEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCE--EeccccchHHHHHhhcCCCcc
Confidence 67 899999999974 67777777763 47899999999987776654 34422 1111 11 0111113699
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+-.... ...++.+.+.|+|+|.++..
T Consensus 241 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 241 IAIDLVGT------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCC------hHHHHHHHHHhhcCCEEEEe
Confidence 99865332 34678888999999998764
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.027 Score=47.93 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCE---EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----CCccE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCK---ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----ASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~---v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~D~ 133 (291)
....+++|+-||.|.++..+.+. |.+ |.++|+++.+++..+.+. +...++.+|+.++... ..+|+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a--G~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~Dl 86 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL--GIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFDL 86 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT--TBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC--CCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcCE
Confidence 45679999999999999998876 554 589999999777666553 2346778999887532 36999
Q ss_pred EEEcccc
Q 022810 134 IYSIEMF 140 (291)
Q Consensus 134 v~~~~~l 140 (291)
++...+-
T Consensus 87 l~ggpPC 93 (295)
T 2qrv_A 87 VIGGSPC 93 (295)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9987644
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.022 Score=49.51 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=64.4
Q ss_pred HHHcCCC------CCCEEEEE-cCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-
Q 022810 56 CERSRLE------DGHTVLDV-GCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE- 126 (291)
Q Consensus 56 ~~~~~~~------~~~~vLDi-GcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~- 126 (291)
.+...+. ++.+||-+ |+| .|..+..+++.. +++|++++.+++.++.+++ .|.+. ++..+ .++.
T Consensus 137 ~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~-~~~~~ 208 (346)
T 3fbg_A 137 FDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----MGADI--VLNHK-ESLLN 208 (346)
T ss_dssp HTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCSE--EECTT-SCHHH
T ss_pred HHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcE--EEECC-ccHHH
Confidence 3455666 89999999 454 577888888776 8899999999987777654 34421 11111 1110
Q ss_pred -----cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 127 -----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 127 -----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
....+|+|+-... ....+..+.++|+++|.++.
T Consensus 209 ~~~~~~~~g~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 209 QFKTQGIELVDYVFCTFN------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp HHHHHTCCCEEEEEESSC------HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHhCCCCccEEEECCC------chHHHHHHHHHhccCCEEEE
Confidence 1146898886422 34567888899999999865
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.016 Score=50.77 Aligned_cols=97 Identities=14% Similarity=0.267 Sum_probs=65.6
Q ss_pred HHcCCC-----CCCEEEEEc-CC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc--cc----c
Q 022810 57 ERSRLE-----DGHTVLDVG-CG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA--DI----S 123 (291)
Q Consensus 57 ~~~~~~-----~~~~vLDiG-cG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~--d~----~ 123 (291)
+...+. ++.+||-+| +| .|..+..+++...+.+|++++.+++.++.+++ .|.+. ++.. |. .
T Consensus 160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~--vi~~~~~~~~~v~ 233 (363)
T 4dvj_A 160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHH--VIDHSKPLAAEVA 233 (363)
T ss_dssp TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSE--EECTTSCHHHHHH
T ss_pred HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCCHHHHHH
Confidence 445565 788999998 55 68888899886348899999999987766643 45422 1111 11 1
Q ss_pred CCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 124 TFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 124 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+. ..+.+|+|+-... ....+..+.++|+++|.+++.
T Consensus 234 ~~-~~~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 234 AL-GLGAPAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp TT-CSCCEEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred Hh-cCCCceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 11 1147898876422 345778888999999998764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.031 Score=48.57 Aligned_cols=96 Identities=16% Similarity=0.299 Sum_probs=64.8
Q ss_pred HHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc---CCcc---
Q 022810 56 CERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS---TFEM--- 127 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~---~~~~--- 127 (291)
+....+.++.+||-+|+ |.|..+..+++.. +.+|++++.+++..+.+++ .+.+ ..+ |.. +...
T Consensus 162 l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~~--~~~--d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 162 LKSANLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGGE--VFI--DFTKEKDIVGAVL 232 (347)
T ss_dssp HHTTTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTCC--EEE--ETTTCSCHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCCc--eEE--ecCccHhHHHHHH
Confidence 34456788999999998 4677777777765 7899999998886655543 3432 111 332 1110
Q ss_pred ---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 ---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+.+|+|+.+... ...++.+.+.|+++|.+++.
T Consensus 233 ~~~~~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 233 KATDGGAHGVINVSVS------EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHHTSCEEEEEECSSC------HHHHHHHTTSEEEEEEEEEC
T ss_pred HHhCCCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEE
Confidence 0268988876432 35678889999999998764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.016 Score=51.07 Aligned_cols=100 Identities=12% Similarity=0.119 Sum_probs=67.0
Q ss_pred HHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--ccCCc----
Q 022810 55 YCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--ISTFE---- 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d--~~~~~---- 126 (291)
+.+...++++.+||-+|+| .|..+..+++.. ++ +|+++|.+++.++.++ +.|.+. ++... -.++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAK----KFGVNE--FVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHH----TTTCCE--EECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCcE--EEccccCchhHHHHHH
Confidence 3455677899999999997 478888888776 66 8999999998776654 345422 22111 01110
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 167 (291)
..+.+|+|+-... ....++.+.+.|++| |++++..
T Consensus 258 ~~~~gg~D~vid~~g------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 258 DLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HhcCCCCCEEEECCC------CHHHHHHHHHHhhccCCEEEEEc
Confidence 1136899886432 245678889999997 9987743
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.028 Score=48.66 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=64.7
Q ss_pred HHHHcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------
Q 022810 55 YCERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------ 126 (291)
+.+...++++.+||-+|+| .|..+..+++.. +++|++++.+++.++.+++ .|.+. .+...-.+..
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~~--~~~~~~~~~~~~~~~~ 208 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAAY--VIDTSTAPLYETVMEL 208 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE--EEETTTSCHHHHHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCcE--EEeCCcccHHHHHHHH
Confidence 3455678899999999987 677888888765 8899999999987777654 34421 2221111111
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+|+|+.+..- ... ....+.|+++|.+++..
T Consensus 209 ~~~~g~Dvvid~~g~------~~~-~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 209 TNGIGADAAIDSIGG------PDG-NELAFSLRPNGHFLTIG 243 (340)
T ss_dssp TTTSCEEEEEESSCH------HHH-HHHHHTEEEEEEEEECC
T ss_pred hCCCCCcEEEECCCC------hhH-HHHHHHhcCCCEEEEEe
Confidence 11469998875432 122 33447899999987743
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.085 Score=46.49 Aligned_cols=82 Identities=9% Similarity=0.104 Sum_probs=49.5
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-------CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-------SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
+.++.+.+..|+|+|.|.|.++..+.+.. ...+++.||+|+...+.=++.+.. .+++.|. .++.+++.
T Consensus 74 ~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~--~~~v~W~-~~l~~lp~-- 148 (387)
T 1zkd_A 74 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--IRNIHWH-DSFEDVPE-- 148 (387)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--CSSEEEE-SSGGGSCC--
T ss_pred HHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC--CCCeEEe-CChhhcCC--
Confidence 34555556689999999999988776531 235899999999866543333322 2256654 23333331
Q ss_pred CccEEEEccccccc
Q 022810 130 SYDRIYSIEMFEHM 143 (291)
Q Consensus 130 ~~D~v~~~~~l~~~ 143 (291)
..-+|++|..+..+
T Consensus 149 ~~~~viANE~fDAl 162 (387)
T 1zkd_A 149 GPAVILANEYFDVL 162 (387)
T ss_dssp SSEEEEEESSGGGS
T ss_pred CCeEEEeccccccC
Confidence 23455666555433
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.036 Score=48.49 Aligned_cols=97 Identities=20% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cC
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------~~ 128 (291)
+...++++.+||-+|+|. |..+..+++.. +++|++++.+++.++.+++ .|.+. ++..+-.++. ..
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~v~~~~~g 255 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----LGADH--GINRLEEDWVERVYALTGD 255 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH----cCCCE--EEcCCcccHHHHHHHHhCC
Confidence 456778999999999884 77888888876 8899999999987776643 45422 2222211211 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+|+|+-... ...+..+.+.|+|+|.+++..
T Consensus 256 ~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 256 RGADHILEIAG-------GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp CCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEEC
T ss_pred CCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEe
Confidence 37999886543 124667778899999987754
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.045 Score=47.36 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=64.7
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~ 128 (291)
+...+.++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ +.|.+ ..+-..+..++. ..
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~---~~g~~-~~~d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT---KFGFD-DAFNYKEESDLTAALKRCFP 223 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TSCCS-EEEETTSCSCSHHHHHHHCT
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCc-eEEecCCHHHHHHHHHHHhC
Confidence 4567788999999997 4677788887765 7899999999887666542 23432 111111111111 01
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+.+... ..+..+.+.|+++|.+++.
T Consensus 224 ~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 224 NGIDIYFENVGG-------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp TCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCcEEEECCCH-------HHHHHHHHHHhcCCEEEEE
Confidence 368988875431 3678888999999998764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.015 Score=50.29 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=67.1
Q ss_pred HHHHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----
Q 022810 53 ELYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 126 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---- 126 (291)
..+.+...++++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+. ++.|.+ ..+...-.+..
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~---~~~g~~--~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLV---EELGFD--GAIDYKNEDLAAGLK 212 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH---HTTCCS--EEEETTTSCHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH---HHcCCC--EEEECCCHHHHHHHH
Confidence 33445667889999999998 4677888888776 889999999998666552 233432 11211111111
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+.+|+|+.+..- ..+..+.+.|+++|.+++.
T Consensus 213 ~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 213 RECPKGIDVFFDNVGG-------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred HhcCCCceEEEECCCc-------chHHHHHHHHhhCCEEEEE
Confidence 01468988875331 3678888999999998764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.051 Score=47.14 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=64.3
Q ss_pred HHcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----c--cC
Q 022810 57 ERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----E--ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~----~--~~ 128 (291)
....+.++.+||-.|+| .|..+..+++...+++|+++|.+++.++.+++ .+.+ ..+...+ .+. . ..
T Consensus 164 ~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~-~~~~~~~~~~~~ 237 (347)
T 1jvb_A 164 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD-YVINASM-QDPLAEIRRITE 237 (347)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS-EEEETTT-SCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-EEecCCC-ccHHHHHHHHhc
Confidence 45677899999999997 55666666665436899999999987776643 3432 1111111 111 0 11
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.+|+|+.+..- ...++.+.+.|+|+|.+++.
T Consensus 238 ~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 238 SKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEEC
T ss_pred CCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 368988865432 34677888999999998763
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.02 Score=49.75 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=65.9
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~ 128 (291)
+...++++.+||-+|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+. ++..+ .++. ..
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~--v~~~~-~~~~~~v~~~~~ 224 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGADI--VLPLE-EGWAKAVREATG 224 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSE--EEESS-TTHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcE--EecCc-hhHHHHHHHHhC
Confidence 4567789999999997 4688888888876 8899999999987776654 34422 22222 2211 11
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+|+|+....- ..+..+.+.|+++|.+++..
T Consensus 225 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 225 GAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 369999875432 24677888999999987743
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.029 Score=48.45 Aligned_cols=75 Identities=7% Similarity=0.084 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-CCCEE-EEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY-SNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~-p~~~v-~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~D~v~~ 136 (291)
...+++|+.||.|.++..+.+.. +...+ .++|+++.+++..+.|... . ++.+|+.++... ..+|+++.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEe
Confidence 35689999999999999998762 11345 6999999988887777632 1 567888877532 36899998
Q ss_pred ccccccc
Q 022810 137 IEMFEHM 143 (291)
Q Consensus 137 ~~~l~~~ 143 (291)
.++-+.+
T Consensus 83 gpPCQ~f 89 (327)
T 3qv2_A 83 SPPCQPY 89 (327)
T ss_dssp CCCCTTC
T ss_pred cCCccCc
Confidence 7764443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.026 Score=48.98 Aligned_cols=101 Identities=8% Similarity=-0.004 Sum_probs=63.5
Q ss_pred HHHcCCCCCCEEEEEcCCcc-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCC----ccCC
Q 022810 56 CERSRLEDGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTF----EMEA 129 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~----~~~~ 129 (291)
++....+++.+||=+|+|.+ ..+..+++...+.+|+++|.+++.++.++ +.|.+. +.....|..+. ....
T Consensus 156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~----~~Ga~~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK----KIGADVTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH----HTTCSEEEEC-CCCHHHHHHHHTTSS
T ss_pred ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh----hcCCeEEEeCCCCCHHHHhhhhcCCC
Confidence 45567789999999999864 56666666555789999999998665554 344421 11111221110 1113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|.++.... -...+....+.|+++|.+++.
T Consensus 232 g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 232 GVQSAIVCAV------ARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CEEEEEECCS------CHHHHHHHHHTEEEEEEEEEC
T ss_pred CceEEEEecc------CcchhheeheeecCCceEEEE
Confidence 4666655322 245678888999999998764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.052 Score=47.82 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=65.3
Q ss_pred HHcC-CCCCCEEEEEcCC-cchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc------ccC-Cc
Q 022810 57 ERSR-LEDGHTVLDVGCG-WGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD------IST-FE 126 (291)
Q Consensus 57 ~~~~-~~~~~~vLDiGcG-~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d------~~~-~~ 126 (291)
...+ +.++.+||-+|+| .|..+..+++.. + .+|++++.+++.++.++ +.|.+. ++..+ +.+ +.
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAE----EIGADL--TLNRRETSVEERRKAIM 260 (380)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHH----HTTCSE--EEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHH----HcCCcE--EEeccccCcchHHHHHH
Confidence 4567 7889999999977 477888888876 7 59999999998776665 345422 22221 111 10
Q ss_pred --cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 --ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 --~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.. ..+|+|+-.... ...+..+.+.|+++|.++..
T Consensus 261 ~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 261 DITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 11 368998865321 23567788899999998764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.12 Score=45.01 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=65.3
Q ss_pred HHcCCCCCCEEEEEc--CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022810 57 ERSRLEDGHTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiG--cG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~ 128 (291)
+...++++.+||-+| .|.|..+..+++.. +++|++++.+++.++.+++ .|.+ .++..+-.++. ..
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCD--RPINYKTEPVGTVLKQEYP 229 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHCT
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCc--EEEecCChhHHHHHHHhcC
Confidence 445678899999999 45788888888876 8899999999887766553 4442 12221111110 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+....- ..++.+.+.|+++|.+++.
T Consensus 230 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 230 EGVDVVYESVGG-------AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp TCEEEEEECSCT-------HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCCH-------HHHHHHHHHHhcCCEEEEE
Confidence 468998865431 4677888999999987764
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.043 Score=47.88 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=61.8
Q ss_pred HHcCCCCC------CEEEEEcCC-cchHH-HHHH-HHCCCCE-EEEEcCCHH---HHHHHHHHHHHhCCCCeEEEEcccc
Q 022810 57 ERSRLEDG------HTVLDVGCG-WGSLS-LYIA-QKYSNCK-ITGICNSKT---QKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 57 ~~~~~~~~------~~vLDiGcG-~G~~~-~~l~-~~~p~~~-v~~vD~s~~---~~~~a~~~~~~~~~~~i~~~~~d~~ 123 (291)
+...++++ .+||-+|+| .|..+ ..++ +.. +++ |++++.+++ ..+.++ +.|. ..+ |..
T Consensus 160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~----~lGa---~~v--~~~ 229 (357)
T 2b5w_A 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIE----ELDA---TYV--DSR 229 (357)
T ss_dssp HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHH----HTTC---EEE--ETT
T ss_pred HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHH----HcCC---ccc--CCC
Confidence 34455678 999999986 46777 7888 655 676 999999887 666654 3443 222 322
Q ss_pred CCcc------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 124 TFEM------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 124 ~~~~------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+... .+.+|+|+-...- ...++.+.+.|+++|+++..
T Consensus 230 ~~~~~~i~~~~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 230 QTPVEDVPDVYEQMDFIYEATGF------PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp TSCGGGHHHHSCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred ccCHHHHHHhCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEE
Confidence 2110 1268888754321 34678888999999998764
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.036 Score=48.01 Aligned_cols=73 Identities=10% Similarity=0.134 Sum_probs=53.7
Q ss_pred CEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~D~v~~~~~ 139 (291)
.+++|+.||.|.++..+.+..-+ ..+.++|+++.+++..+.|+. ...++.+|+.++... ..+|+++..++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence 48999999999999999877211 347899999998777666542 344678888876532 36899998775
Q ss_pred ccc
Q 022810 140 FEH 142 (291)
Q Consensus 140 l~~ 142 (291)
-+.
T Consensus 79 CQ~ 81 (333)
T 4h0n_A 79 CQP 81 (333)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.096 Score=45.09 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=64.0
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cCC
Q 022810 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------MEA 129 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------~~~ 129 (291)
..++++.+||-+|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+ .++..+-.+.. ...
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~--~~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKE----YGAE--YLINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHTTTS
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc--EEEeCCCchHHHHHHHHhCCC
Confidence 46788999999994 4677888888776 8899999999987766543 3432 12222111111 114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|+|+.+..- ..++.+.+.|+++|.+++..
T Consensus 217 g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 217 GVDASFDSVGK-------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp CEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred CceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence 69998875432 35677788999999987743
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=50.45 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=42.0
Q ss_pred CCeEEEEccccCCc--cC-CCccEEEEcccccccc--------------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 113 QNVEIIVADISTFE--ME-ASYDRIYSIEMFEHMK--------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 ~~i~~~~~d~~~~~--~~-~~~D~v~~~~~l~~~~--------------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+++++++|+.+.. .+ ++||+|++++++.... ....+++++.++|+|||.+++...
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 36789999998732 23 7899999999875321 124577889999999999988754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.077 Score=46.02 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=64.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------c
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------~ 127 (291)
+...+ ++.+||-+|+| .|..+..+++.. ++ +|++++.+++.++.+++ .|.+. ++..+-.++. .
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~----~Ga~~--~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKK----VGADY--VINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHH----HTCSE--EECTTTSCHHHHHHHHTT
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCE--EECCCCcCHHHHHHHHcC
Confidence 45567 89999999996 377788888776 77 89999999987766653 34421 1211111110 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+|+|+..... ...++.+.+.|+++|.++..
T Consensus 234 g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 234 GNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp TSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 1368998865432 35678888999999998764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.13 Score=44.80 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=64.6
Q ss_pred HHcCCCCCCEEEEEc--CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------C
Q 022810 57 ERSRLEDGHTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiG--cG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~------~ 128 (291)
+...++++.+||-+| +|.|..+..+++.. +++|++++.+++.++.+++ .|.+ ..+..+-.+... .
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~--~~~~~~~~~~~~~~~~~~~ 233 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACER----LGAK--RGINYRSEDFAAVIKAETG 233 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHHS
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCC--EEEeCCchHHHHHHHHHhC
Confidence 456778999999995 34678888888776 8899999999997776654 3442 122211111110 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+.+..- ..+....+.|+++|.+++.
T Consensus 234 ~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 234 QGVDIILDMIGA-------AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp SCEEEEEESCCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred CCceEEEECCCH-------HHHHHHHHHhccCCEEEEE
Confidence 468998875432 2467778899999998764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.095 Score=44.86 Aligned_cols=97 Identities=11% Similarity=0.200 Sum_probs=63.5
Q ss_pred HHcCCCCCC-EEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCc
Q 022810 57 ERSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASY 131 (291)
Q Consensus 57 ~~~~~~~~~-~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 131 (291)
....+.++. +||=+|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+. .+-..+..... ..+.+
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~~~~ 212 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKS----LGANR-ILSRDEFAESRPLEKQLW 212 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTCSE-EEEGGGSSCCCSSCCCCE
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCE-EEecCCHHHHHhhcCCCc
Confidence 344455422 4999997 4788899999877 8899999999998777754 45422 11112211111 11568
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+-.. .. ..+..+.+.|+|+|+++..
T Consensus 213 d~v~d~~-----g~--~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 213 AGAIDTV-----GD--KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp EEEEESS-----CH--HHHHHHHHTEEEEEEEEEC
T ss_pred cEEEECC-----Cc--HHHHHHHHHHhcCCEEEEE
Confidence 8877542 11 2788889999999998774
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.052 Score=47.39 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=64.0
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc-CCc--cCCCcc
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-TFE--MEASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~-~~~--~~~~~D 132 (291)
...++.++.+||-+|+| .|..+..+++.. +++|++++.+++.++.+++ .|.+. ++..+-. +.. ..+.+|
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--v~~~~~~~~~~~~~~~~~D 245 (360)
T 1piw_A 173 VRNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEKYFDTFD 245 (360)
T ss_dssp HHTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHHSCSCEE
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCCCE--EEcCcCchHHHHHhhcCCC
Confidence 34678899999999986 477788888765 7899999999887776654 34422 2221111 111 014689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+...... ....++.+.+.|+++|.++..
T Consensus 246 ~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 246 LIVVCASSL----TDIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEECCSCS----TTCCTTTGGGGEEEEEEEEEC
T ss_pred EEEECCCCC----cHHHHHHHHHHhcCCCEEEEe
Confidence 988654320 012345667889999998764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.12 Score=44.21 Aligned_cols=93 Identities=10% Similarity=0.117 Sum_probs=62.7
Q ss_pred HcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------c
Q 022810 58 RSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------M 127 (291)
Q Consensus 58 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--------~ 127 (291)
...++++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .+.+ . .+ |..+.. .
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~----~g~~-~-~~--~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW-Q-VI--NYREEDLVERLKEIT 205 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS-E-EE--ETTTSCHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC-E-EE--ECCCccHHHHHHHHh
Confidence 456788999999993 5677777776655 7899999999887766654 3432 1 11 222111 0
Q ss_pred -CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 -~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+|+|+.+.. ...++.+.+.|+++|.+++.
T Consensus 206 ~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 206 GGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEE
Confidence 136899887643 24567788999999998764
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.1 Score=44.81 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=64.9
Q ss_pred HHcCCCCCCEEEEEc-C-CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022810 57 ERSRLEDGHTVLDVG-C-GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiG-c-G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~ 128 (291)
+...++++.+||-+| + |.|..+..+++.. +++|++++.+++.++.+++ .|.+ ..+..+-.+.. ..
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~ 206 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----LGAW--ETIDYSHEDVAKRVLELTD 206 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC--EEEeCCCccHHHHHHHHhC
Confidence 345678899999999 3 4678888888765 8899999999987776653 3432 12221111111 11
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+|+|+.+..- ..+..+.+.|+++|.+++..
T Consensus 207 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 207 GKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp TCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECC
T ss_pred CCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEe
Confidence 469998875432 35677888999999987743
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.26 Score=43.67 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=61.0
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cCCC
Q 022810 60 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------MEAS 130 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------~~~~ 130 (291)
.++++.+||=+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+ .++..+-.++. ....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAKE----LGAD--HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTCS--EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCC--EEEcCCCCCHHHHHHHHhCCCC
Confidence 577899999999874 77888888876 77 99999999987776654 3442 12221111111 1136
Q ss_pred ccEEEEcccccccccHHHHHHHHH----hccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKIS----KWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~----~~L~pgG~l~i~~ 167 (291)
+|+|+-... .....+..+. +.++++|.+++..
T Consensus 283 ~D~vid~~g-----~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 283 AKLFLEATG-----VPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CSEEEECSS-----CHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCEEEECCC-----CcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 999886432 2222344444 4449999987743
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.22 Score=43.16 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=63.4
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------- 126 (291)
+...++++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.++ +.+.+ ..+ |..+..
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~~ga~--~~~--d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAH--EVF--NHREVNYIDKIKKY 234 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCS--EEE--ETTSTTHHHHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHH----HcCCC--EEE--eCCCchHHHHHHHH
Confidence 3457788999999997 4677777777765 789999999998766543 33432 112 222111
Q ss_pred c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. ...+|+|+.+..- ..+....+.|+++|.+++.
T Consensus 235 ~~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 235 VGEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HCTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEE
Confidence 0 1368998876431 3467778999999998764
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.2 Score=43.05 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=63.5
Q ss_pred HcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---------
Q 022810 58 RSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------- 126 (291)
Q Consensus 58 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--------- 126 (291)
...+.++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .+.+ . .+ |..+..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~g~~-~-~~--d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK----LGCH-H-TI--NYSTQDFAEVVREIT 210 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCS-E-EE--ETTTSCHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC-E-EE--ECCCHHHHHHHHHHh
Confidence 456788999999995 5777777777765 7899999999987766643 3432 1 11 222211
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
....+|+|+.+..- ..++.+.+.|+++|.++..
T Consensus 211 ~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 211 GGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp TTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEE
Confidence 01368998865432 3567788999999997764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.2 Score=43.21 Aligned_cols=92 Identities=11% Similarity=0.158 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------cC
Q 022810 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------ME 128 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--------~~ 128 (291)
..++++.+||-+|+ |.|..+..+++.. +.+|++++.+++.++.+++ .+.+. ++ |..+.. ..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~--~~--d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADE--TV--NYTHPDWPKEVRRLTG 232 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSE--EE--ETTSTTHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCE--EE--cCCcccHHHHHHHHhC
Confidence 46778999999998 5788888888776 7899999999987776653 34321 12 222111 11
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+.+.. . ..++.+.+.|+++|.++..
T Consensus 233 ~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 233 GKGADKVVDHTG-A------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC-H------HHHHHHHHhhccCCEEEEE
Confidence 36899987643 1 2467778889999987763
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.043 Score=47.89 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=62.2
Q ss_pred HHHcCCC-CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-cCCCcc
Q 022810 56 CERSRLE-DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYD 132 (291)
Q Consensus 56 ~~~~~~~-~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-~~~~~D 132 (291)
+....+. ++.+||-+|+| .|..+..+++.. +++|++++.+++.++.+++ +.|.+.+ +...+..... ..+.+|
T Consensus 172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~~v-i~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQ---DLGADDY-VIGSDQAKMSELADSLD 246 (357)
T ss_dssp HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHT---TSCCSCE-EETTCHHHHHHSTTTEE
T ss_pred HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH---HcCCcee-eccccHHHHHHhcCCCC
Confidence 3445677 89999999987 467777777766 7899999998876555442 3444321 1111111111 114689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+-...-. ..++...+.|+|+|.++..
T Consensus 247 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 247 YVIDTVPVH------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEECCCSC------CCSHHHHTTEEEEEEEEEC
T ss_pred EEEECCCCh------HHHHHHHHHhccCCEEEEe
Confidence 888643321 1245667899999998763
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.21 Score=43.36 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=62.9
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------c-
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M- 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~- 127 (291)
+...+.++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .+.+ . .+..+-.+.. .
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~-~-~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEK----LGAA-A-GFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCS-E-EEETTTSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCc-E-EEecCChHHHHHHHHHhc
Confidence 4456788999999984 4677777777765 7899999999987776633 3432 1 1111111110 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+|+|+.+..- ..+....+.|+++|.+++.
T Consensus 229 ~~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 229 GAGVNLILDCIGG-------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TSCEEEEEESSCG-------GGHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEEECCCc-------hHHHHHHHhccCCCEEEEE
Confidence 1368998876432 1356677889999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.21 Score=37.01 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=55.3
Q ss_pred CCEEEEEcCCc-chH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEE
Q 022810 64 GHTVLDVGCGW-GSL-SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~-G~~-~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~ 136 (291)
..+|+=+|||. |.. +..|.+. +.+|+++|.+++.++.+++ . .+.++.+|..+... . ..+|+|++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 35789999874 433 3333333 7899999999997765543 2 46778899876421 1 56888887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...-. .....+-...+.+.|+..++..
T Consensus 78 ~~~~~---~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 78 TIPNG---YEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp CCSCH---HHHHHHHHHHHHHCSSSEEEEE
T ss_pred ECCCh---HHHHHHHHHHHHHCCCCeEEEE
Confidence 53221 1122233345556787776553
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.065 Score=46.91 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=61.7
Q ss_pred HHHcCCC-CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCc-cCCCc
Q 022810 56 CERSRLE-DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFE-MEASY 131 (291)
Q Consensus 56 ~~~~~~~-~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~-~d~~~~~-~~~~~ 131 (291)
+....+. ++.+||-+|+| .|..+..+++.. +++|++++.+++.++.+++ +.|.+ .++. .+..... ..+.+
T Consensus 179 l~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~--~v~~~~~~~~~~~~~~~~ 252 (366)
T 1yqd_A 179 LKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALK---NFGAD--SFLVSRDQEQMQAAAGTL 252 (366)
T ss_dssp HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHH---TSCCS--EEEETTCHHHHHHTTTCE
T ss_pred HHhcCcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---hcCCc--eEEeccCHHHHHHhhCCC
Confidence 3445677 89999999986 367777777776 7899999999886655542 33432 1121 1111111 01468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+...... ..++...+.|+++|.++..
T Consensus 253 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 253 DGIIDTVSAV------HPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp EEEEECCSSC------CCSHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCcH------HHHHHHHHHHhcCCEEEEE
Confidence 9988654321 1244566788999997764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.17 Score=43.75 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=63.2
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------c
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------~ 127 (291)
+...++++.+||-+|+ |.|..+..+++.. +++|+++ .+++.++.+++ .|.+ .+. +-.+.. .
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~----lGa~---~i~-~~~~~~~~~~~~~~ 213 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRD----LGAT---PID-ASREPEDYAAEHTA 213 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHH----HTSE---EEE-TTSCHHHHHHHHHT
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHH----cCCC---Eec-cCCCHHHHHHHHhc
Confidence 5567789999999994 4688888888876 8899999 78876665543 4542 122 222211 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+|+|+-... ...+..+.+.|+++|.+++.
T Consensus 214 ~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 214 GQGFDLVYDTLG-------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TSCEEEEEESSC-------THHHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC-------cHHHHHHHHHHhcCCeEEEE
Confidence 146898886432 14677788899999998763
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.011 Score=51.46 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=61.9
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cCC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEA 129 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~~ 129 (291)
...+ ++.+||-+|+| .|..+..+++.. ++ +|++++.+++.++.+++. .+ .++..+-.++. ...
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-----a~--~v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-----AD--RLVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-----CS--EEECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-----HH--hccCcCccCHHHHHHHhcCC
Confidence 5567 89999999986 377788888776 77 899999998876665432 11 11111101110 023
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+-...- ...++...+.|+++|.++..
T Consensus 231 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 231 GVEVLLEFSGN------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp CEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 68988865321 35678888999999987764
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.1 Score=45.55 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCH---HHHHHHHHHHHHhCCCCeEEEEccccC-Ccc-----CCCccE
Q 022810 64 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSK---TQKEFIEEQCRVLELQNVEIIVADIST-FEM-----EASYDR 133 (291)
Q Consensus 64 ~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~---~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~~-----~~~~D~ 133 (291)
+.+||-+|+| .|..+..+++.. +++|++++.++ +..+.++ +.|.+ .+ | .+ +.. ...+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~----~~ga~---~v--~-~~~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIE----ETKTN---YY--N-SSNGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHH----HHTCE---EE--E-CTTCSHHHHHHHCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHH----HhCCc---ee--c-hHHHHHHHHHhCCCCCE
Confidence 8999999985 356666666655 78999999987 6555554 33432 22 2 22 110 146899
Q ss_pred EEEcccccccccHHHHH-HHHHhccccCeeEEEE
Q 022810 134 IYSIEMFEHMKNYQNLL-KKISKWMKEDTLLFVH 166 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l-~~~~~~L~pgG~l~i~ 166 (291)
|+..... ...+ +.+.+.|+++|.+++.
T Consensus 250 vid~~g~------~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 250 IIDATGA------DVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEECCCC------CTHHHHHHGGGEEEEEEEEEC
T ss_pred EEECCCC------hHHHHHHHHHHHhcCCEEEEE
Confidence 8875432 1245 7888999999998764
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.16 Score=38.35 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
+|+..++..++.+...+| -|||+|-|+|..=.++.+.+|+.+++++|-.-.. ....-.+.-.++.+|+.+..
T Consensus 25 aQR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~-------hp~~~P~~e~~ilGdi~~tL 96 (174)
T 3iht_A 25 SQRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS-------HPDSTPPEAQLILGDIRETL 96 (174)
T ss_dssp HHHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC-------CGGGCCCGGGEEESCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc-------CCCCCCchHheecccHHHHH
Confidence 345556777776665555 6999999999999999999999999999943210 00111122356777776642
Q ss_pred c------CCCccEEEEcccccccccH---HH-HHHHHHhccccCeeEEEEe
Q 022810 127 M------EASYDRIYSIEMFEHMKNY---QN-LLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~------~~~~D~v~~~~~l~~~~~~---~~-~l~~~~~~L~pgG~l~i~~ 167 (291)
. ..+.-++.+..-.+.-+.- .. +-.-+..+|.|||+++-..
T Consensus 97 ~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~ 147 (174)
T 3iht_A 97 PATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSD 147 (174)
T ss_dssp HHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 1 1233333333222221111 11 2234567899999876543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.05 E-value=0.14 Score=43.36 Aligned_cols=91 Identities=9% Similarity=0.046 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cCCccC-CCccEEEE
Q 022810 61 LEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFEME-ASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~D~v~~ 136 (291)
++++.+||-+|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+. ++..+- .+.... ..+|+|+.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~--~~~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA----LGAEE--AATYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----TTCSE--EEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCE--EEECCcchhHHHHhcCceEEEE
Confidence 778999999998 4677888888776 7899999999887766643 44421 121110 111111 56899887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..- ..++.+.+.|+++|.++..
T Consensus 196 -~g~-------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 -VRG-------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp -CSC-------TTHHHHHTTEEEEEEEEEC
T ss_pred -CCH-------HHHHHHHHhhccCCEEEEE
Confidence 321 2467788999999987763
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.77 Score=37.76 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=55.3
Q ss_pred CCCEEEEEcCC----cch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022810 63 DGHTVLDVGCG----WGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG----~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------- 127 (291)
.++++|=-|++ .|. .+..|++. |++|+.++.+++..+.+.+.+.+.+-.++.++.+|+.+...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 57889988853 343 45566665 89999999999888888777766554578889999877421
Q ss_pred C-CCccEEEEccc
Q 022810 128 E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ~-~~~D~v~~~~~ 139 (291)
. +..|+++.+..
T Consensus 83 ~~G~iD~lvnnAg 95 (256)
T 4fs3_A 83 DVGNIDGVYHSIA 95 (256)
T ss_dssp HHCCCSEEEECCC
T ss_pred HhCCCCEEEeccc
Confidence 1 67899988754
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.056 Score=51.59 Aligned_cols=103 Identities=9% Similarity=0.101 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-------CC-----CEEEEEcC---CHHHHHHHH-----------HHHHHh-----C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY-------SN-----CKITGICN---SKTQKEFIE-----------EQCRVL-----E 111 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~-------p~-----~~v~~vD~---s~~~~~~a~-----------~~~~~~-----~ 111 (291)
+..+|+|+|.|+|.+...+.+.+ |. .+++.+|. +.+.+..+. +..... |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999999887775542 21 57899998 444443322 111111 1
Q ss_pred C------C---CeEEEEccccCCcc------CCCccEEEEccccccc-cc--HHHHHHHHHhccccCeeEEE
Q 022810 112 L------Q---NVEIIVADISTFEM------EASYDRIYSIEMFEHM-KN--YQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 112 ~------~---~i~~~~~d~~~~~~------~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~L~pgG~l~i 165 (291)
. + .+++..+|+.+... ...+|.++....--.. ++ ...++..+.++++|||.+..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 0 1 46778888865321 2579999986522111 11 26789999999999998764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.97 Score=37.12 Aligned_cols=103 Identities=11% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCCEEEEEcCC----cch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---------
Q 022810 63 DGHTVLDVGCG----WGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG----~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--------- 128 (291)
.++++|=.|++ .|. ++..|++. +.+|+.++.++...+.+.+.....+..++.++.+|+.+...-
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999876 232 45555555 889999998877666666655544434689999999875310
Q ss_pred --CCccEEEEcccccc----------c--cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 129 --ASYDRIYSIEMFEH----------M--KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 --~~~D~v~~~~~l~~----------~--~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+..|+++.+..+.. . .+ ...+++.+...++++|.++...
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 47899988764432 1 11 1235566677778888876654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.28 Score=42.53 Aligned_cols=97 Identities=18% Similarity=0.329 Sum_probs=64.5
Q ss_pred HHHHcCCCCC--CEEEEEcC--CcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022810 55 YCERSRLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 55 ~~~~~~~~~~--~~vLDiGc--G~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--- 126 (291)
+.+...++++ .+||-.|+ |.|..+..+++.. ++ +|++++.+++.++.+++. .+.+ . . .|..+..
T Consensus 150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~---~g~~-~-~--~d~~~~~~~~ 221 (357)
T 2zb4_A 150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSE---LGFD-A-A--INYKKDNVAE 221 (357)
T ss_dssp HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT---SCCS-E-E--EETTTSCHHH
T ss_pred HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHH---cCCc-e-E--EecCchHHHH
Confidence 3356678889 99999997 4567777777665 77 999999998766555431 3432 1 1 2222211
Q ss_pred -----cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 -----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+.+|+|+.+.. ...++.+.+.|+++|++++.
T Consensus 222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEE
Confidence 0125898887543 25678888999999998764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.44 Score=40.61 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEEc-CC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-CccC-CCcc
Q 022810 57 ERSRLEDGHTVLDVG-CG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEME-ASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiG-cG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~~~-~~~D 132 (291)
+...++++.+||=+| +| .|..+..+++.. +++|++++ ++...+.+ ++.|.+. ++..+-.+ +... ..+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~----~~lGa~~--~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFL----KALGAEQ--CINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHH----HHHTCSE--EEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHH----HHcCCCE--EEeCCCcchhhhhccCCC
Confidence 667888999999997 55 688888888876 88999987 44434444 3455532 22221111 1111 5689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+|+-... -.. +..+.++|+++|+++.
T Consensus 218 ~v~d~~g------~~~-~~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 218 AVIDLVG------GDV-GIQSIDCLKETGCIVS 243 (321)
T ss_dssp EEEESSC------HHH-HHHHGGGEEEEEEEEE
T ss_pred EEEECCC------cHH-HHHHHHhccCCCEEEE
Confidence 8886432 122 3778899999999876
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.051 Score=46.71 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=61.7
Q ss_pred HcCCCCCC-EEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cC-Cc--cCCC
Q 022810 58 RSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-ST-FE--MEAS 130 (291)
Q Consensus 58 ~~~~~~~~-~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~-~~-~~--~~~~ 130 (291)
...+.++. +||-+|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+.+ +-..+. .+ .. ....
T Consensus 143 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 143 EHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEV-LAREDVMAERIRPLDKQR 216 (328)
T ss_dssp HTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEE-EECC---------CCSCC
T ss_pred hcCCCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----cCCcEE-EecCCcHHHHHHHhcCCc
Confidence 45667775 8999997 4688888888876 7899999999887766643 444221 111111 11 00 1146
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+|+-...- ..+..+.+.|+++|.+++.
T Consensus 217 ~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 217 WAAAVDPVGG-------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEEEECSTT-------TTHHHHHHTEEEEEEEEEC
T ss_pred ccEEEECCcH-------HHHHHHHHhhccCCEEEEE
Confidence 8988764321 2467778899999998764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.18 Score=45.41 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcC-C-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----------
Q 022810 59 SRLEDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----------- 125 (291)
Q Consensus 59 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~----------- 125 (291)
..++++.+||=+|+ | .|..+..+++.. ++++++++.+++.++.+++ .|.+. ++...-.+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRA----MGAEA--IIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCCE--EEETTTTTCCSEEETTEECH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHh----hCCcE--EEecCcCcccccccccccch
Confidence 46788999999997 3 688888888876 8899999998887776643 44421 121111110
Q ss_pred -------------ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 126 -------------EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 126 -------------~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.....+|+|+-... ...+..+.++|+++|.+++.
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEE
Confidence 01147898876432 14677888899999998774
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.062 Score=46.30 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=43.2
Q ss_pred CeEEEEccccCC-c-cC-CCccEEEEccccccc--------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 114 NVEIIVADISTF-E-ME-ASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 114 ~i~~~~~d~~~~-~-~~-~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
...++++|..+. . .+ +++|+|++++++... ......++.+.++|+|||.+++....
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 578899998753 2 22 789999999987433 23567889999999999999987554
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.077 Score=48.26 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=54.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------------
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------------- 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--------------- 127 (291)
..+++|+.||.|.++..+.+. |.+ |.++|+++.+++..+.++... +...++.+|+.++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhh
Confidence 468999999999999999876 555 789999999777666554211 234567788876531
Q ss_pred --C-CCccEEEEccccccc
Q 022810 128 --E-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 128 --~-~~~D~v~~~~~l~~~ 143 (291)
. ..+|+++..++-+.+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPF 182 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC
T ss_pred hhcCCCCCEEEecCCCcch
Confidence 1 468999987765443
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.35 Score=43.11 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=35.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHC----C-CCEEEEEcCCHHHHHHHHHHHHH
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY----S-NCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~----p-~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
..+|+|+|.|.|.++.-+.+.. + ..+++.||+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 4799999999999888776432 1 24899999999887766666654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.5 Score=41.48 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCccCCCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.+.+||.|+.+.|.++..++.. .++.+.-|--....++.|+..++++ ++++... ... .+..||+|+...+-
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~~~~~~~v~~~lpk 110 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD--YPQQPGVVLIKVPK 110 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC--CCSSCSEEEEECCS
T ss_pred CCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc--cccCCCEEEEEcCC
Confidence 4568999999999999988754 3355544565666677888888874 3565322 222 23679998886542
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
........|..+...|+||+.+++..-.
T Consensus 111 -~~~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 111 -TLALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp -CHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred -CHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 3345567888889999999998775543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.097 Score=45.78 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=56.8
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
++.+|+=+|+| .|..+..++... |++|+++|.+++..+.+++.... .+.....+..++... ..+|+|+.....
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc----eeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 35899999996 344555555555 77999999999877766544321 232222222121111 468999875543
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.....+.-+.+...+.|+|||+++..
T Consensus 241 ~~~~~~~li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 241 PGRRAPILVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred CCCCCCeecCHHHHhhCCCCCEEEEE
Confidence 22111111134456778999976653
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.095 Score=46.15 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=55.7
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
++.+|+=+|+| .|......++.+ |.+|+++|.++..++.+++. .+. .+.....+..++... ...|+|+.....
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~---~g~-~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAE---FCG-RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---TTT-SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHh---cCC-eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 57899999996 344444555555 78999999999876655432 232 222221111111111 457999874322
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+...-+.+...+.|+|||+++..
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEE
Confidence 11111111235566788999987653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.12 Score=45.30 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=54.5
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
++.+|+=+|+| .|......+... |++|+++|.++..++.+.+. .+. .+.....+..++... ..+|+|+.....
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~---~g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDV---FGG-RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---TTT-SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHh---cCc-eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 46899999996 244444444444 78999999999866555432 232 222222222221111 468999876543
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.......-+.+.+.+.+++||.++..
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEEC
T ss_pred CccccchhHHHHHHHhhcCCCEEEEE
Confidence 21111111245667888999986653
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=1.6 Score=36.59 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCcc-----hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022810 63 DGHTVLDVGCGWG-----SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G-----~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------- 127 (291)
.++++|=.|++.| .++..|++. +.+|+.++.++...+.+.+.....+ ++.++.+|+.+...
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH
Confidence 5788999997633 244555555 8899999998766555555554443 68889999987431
Q ss_pred C-CCccEEEEcccccc----------c--cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 128 E-ASYDRIYSIEMFEH----------M--KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~----------~--~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. +..|+++.+..+.. . ++ ...+.+.+...++.+|.++...
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 0 47899998765432 1 11 1235556666777788876644
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.99 E-value=0.89 Score=38.06 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-cc---------C--
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM---------E-- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~~---------~-- 128 (291)
.+.+||=.|++.| ++..+++.+ .|.+|++++.++...+.+.+.+...+..++.++.+|+.+. .. .
T Consensus 11 ~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 11 KRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp -CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 4667887776644 444443332 2889999999998777776666655545799999999886 21 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+..+
T Consensus 90 g~iD~lv~nAg~ 101 (311)
T 3o26_A 90 GKLDILVNNAGV 101 (311)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 478999988754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.98 E-value=1.3 Score=36.81 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC------------HHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS------------KTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s------------~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
.++++|=.|++.|. ++..|++. +.+|+.+|.+ ...++.+.......+. ++.++.+|+.+...
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEE--GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHH
Confidence 46788888876542 34445544 8899999987 6666666555555543 78999999987431
Q ss_pred ----------C-CCccEEEEccccccc------cc-----------HHHHHHHHHhccccCeeEEEE
Q 022810 128 ----------E-ASYDRIYSIEMFEHM------KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ----------~-~~~D~v~~~~~l~~~------~~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. +..|+++.+..+... ++ ...+++.+...|+.+|.++..
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 0 378999987654221 11 223455666777778876654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.18 Score=43.18 Aligned_cols=96 Identities=14% Similarity=0.251 Sum_probs=62.5
Q ss_pred HcCCCCCC-EEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cC-Cc-c-CCC
Q 022810 58 RSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-ST-FE-M-EAS 130 (291)
Q Consensus 58 ~~~~~~~~-~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~-~~-~~-~-~~~ 130 (291)
..++.++. +||-+|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+.+ +-..+. .+ .. . ...
T Consensus 144 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~v-~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 144 QNGLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGASEV-ISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp HTTCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCSEE-EEHHHHCSSCCCSSCCCC
T ss_pred hcCcCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEE-EECCCchHHHHHHhhcCC
Confidence 45667775 8999997 4677888888766 7899999998877766653 344221 111111 11 11 1 146
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+|+-... . ..+....+.|+++|.+++.
T Consensus 218 ~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 218 WQGAVDPVG-----G--KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEEESCC-----T--HHHHHHHTTEEEEEEEEEC
T ss_pred ccEEEECCc-----H--HHHHHHHHhhcCCCEEEEE
Confidence 898876432 2 3577888999999998764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.88 E-value=1.2 Score=36.65 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCCEEEEEcC-Ccc--h-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGC-GWG--S-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGc-G~G--~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|+ |.| . ++..|+++ +.+|+.++.++...+.+.+.+...+..++.++.+|+.+... .
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4678888887 444 2 45555655 88999999999887777766655544579999999987431 0
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
++.|+++.+..+
T Consensus 99 ~g~id~li~~Ag~ 111 (266)
T 3o38_A 99 AGRLDVLVNNAGL 111 (266)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCcEEEECCCc
Confidence 478999987754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.95 Score=38.16 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----------- 128 (291)
.+.+||=.|++.|. ++..|+++ |.+|++++.++..++.+.+.+...+. ++.++.+|+.+...-
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 57789988887542 34444544 88999999999988877777766654 789999999874310
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+..+
T Consensus 107 g~id~lvnnAg~ 118 (301)
T 3tjr_A 107 GGVDVVFSNAGI 118 (301)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 378999987654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.15 Score=48.55 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-------C---C--CEEEEEcC---CHHHHHHHHH-----------HHHHhCC----
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY-------S---N--CKITGICN---SKTQKEFIEE-----------QCRVLEL---- 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~-------p---~--~~v~~vD~---s~~~~~~a~~-----------~~~~~~~---- 112 (291)
+.-+|||+|-|+|.+.....+.+ | . .+++++|. +.+.+..+.. .......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 44699999999999877765442 2 1 46899998 7766653322 2222111
Q ss_pred ----------CCeEEEEccccCCcc------CCCccEEEEccccccc-cc--HHHHHHHHHhccccCeeEEE
Q 022810 113 ----------QNVEIIVADISTFEM------EASYDRIYSIEMFEHM-KN--YQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 113 ----------~~i~~~~~d~~~~~~------~~~~D~v~~~~~l~~~-~~--~~~~l~~~~~~L~pgG~l~i 165 (291)
-.+++..+|+.+... ...+|+++...--... ++ ...++..+.++++|||.+..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 134566777765321 2569999986522111 11 36789999999999998765
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.55 Score=40.70 Aligned_cols=98 Identities=10% Similarity=0.188 Sum_probs=56.4
Q ss_pred HcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEc------cccCCccC
Q 022810 58 RSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVA------DISTFEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~v-D~s~~~~~~a~~~~~~~~~~~i~~~~~------d~~~~~~~ 128 (291)
...+.++.+||-+|+ |.|..+..+++.. +++++++ +.++.. +...+.+++.|.+. ++.. ++.+....
T Consensus 162 ~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~-~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~~~~ 237 (357)
T 1zsy_A 162 FEQLQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDI-QKLSDRLKSLGAEH--VITEEELRRPEMKNFFKD 237 (357)
T ss_dssp SSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCH-HHHHHHHHHTTCSE--EEEHHHHHSGGGGGTTSS
T ss_pred HhccCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccch-HHHHHHHHhcCCcE--EEecCcchHHHHHHHHhC
Confidence 356789999999997 4788888888876 7766554 444321 11123344555532 2221 11111111
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+-.-. . ... ....++|+++|.+++.
T Consensus 238 ~~~~Dvvid~~g-----~-~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 238 MPQPRLALNCVG-----G-KSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp SCCCSEEEESSC-----H-HHH-HHHHTTSCTTCEEEEC
T ss_pred CCCceEEEECCC-----c-HHH-HHHHHhhCCCCEEEEE
Confidence 24898875422 1 222 4567899999998764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.088 Score=46.26 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=55.8
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--------------------
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-------------------- 121 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-------------------- 121 (291)
++.+|+=+|+| .|..+..++..+ |++|+++|.++..++.+.+ .|. +++..+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~----lGa---~~~~l~~~~~~~~gya~~~~~~~~~~ 254 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRS----VGA---QWLDLGIDAAGEGGYARELSEAERAQ 254 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHH----TTC---EECCCC-------------CHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccchhhhhHHHHhh
Confidence 67899999998 455555555555 8899999999987666543 232 222211
Q ss_pred -ccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 122 -ISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 122 -~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
...+... ...|+|+.......-+.+.-+-+++.+.+|||++++=
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD 300 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD 300 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence 0011111 6789999753221111111123577788999886543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.05 E-value=1.1 Score=32.93 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=43.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~ 136 (291)
..+|+=+|||. .+..+++.+ .+.+|+++|.+++.++.+++ . .+.++.+|..+... . ..+|+|+.
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---GFDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 45799999963 444333321 27899999999987655543 2 35778888876421 1 56898887
Q ss_pred ccc
Q 022810 137 IEM 139 (291)
Q Consensus 137 ~~~ 139 (291)
...
T Consensus 77 ~~~ 79 (141)
T 3llv_A 77 TGS 79 (141)
T ss_dssp CCS
T ss_pred ecC
Confidence 543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=1.9 Score=36.01 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHH-HHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~-~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. |.+|+.++.+.. ..+.+.+.....+. ++.++.+|+.+... .
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKE--GANIAIAYLDEEGDANETKQYVEKEGV-KCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888876542 34444444 889999998765 33334444444443 78899999987431 1
Q ss_pred -CCccEEEEcccccc----c-----cc-----------HHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~----~-----~~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|+++.+..... + ++ ...+++.+.+.|+.+|.++..
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 47899998753321 1 11 223556667777888876654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=2 Score=36.07 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCc----ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022810 63 DGHTVLDVGCGW----GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~----G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------- 127 (291)
.++++|=.|++. |. ++..|++. |.+|+.++.++...+.+.+.....+ ++.++.+|+.+...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ--GAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999753 32 45555555 8899999999876666655555544 46888999887431
Q ss_pred C-CCccEEEEcccccc----------c--cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 128 E-ASYDRIYSIEMFEH----------M--KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~----------~--~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. +..|+++.+..+.. . .+ ...+.+.+...++.+|.++...
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 0 47899998775432 1 11 1234556666777788876644
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.23 Score=43.44 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCCCCEEEEEc-CC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEE
Q 022810 61 LEDGHTVLDVG-CG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiG-cG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~D~v 134 (291)
+.++.+||-+| +| .|..+..+++.. +++|++++ +++..+.+ ++.|.+. ++..+-.+.. .. ..+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~----~~lGa~~--v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELV----RKLGADD--VIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHH----HHTTCSE--EEETTSSCHHHHHHTSCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHH----HHcCCCE--EEECCchHHHHHHhhcCCCCEE
Confidence 67899999999 34 688888888876 78999998 66655544 3445421 1211111111 11 468988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+-...- ....+....+.|+++|.++..
T Consensus 253 id~~g~-----~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 253 LDNVGG-----STETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EESSCT-----THHHHGGGGBCSSSCCEEEES
T ss_pred EECCCC-----hhhhhHHHHHhhcCCcEEEEe
Confidence 865321 123456677889999998763
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.9 Score=37.20 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~---p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----------- 128 (291)
.+.+||=.|+ +|.++..+++.+ .+.+|++++.++...+.+.+.+...+. ++.++.+|+.+...-
T Consensus 3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4567776664 565555554432 278999999988776666665555443 688999998874210
Q ss_pred CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.+|+|+.+...... .+ ...+++.+.+.++++|.+++.
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 378999877643211 11 123455566666667776654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=1.9 Score=37.55 Aligned_cols=91 Identities=7% Similarity=-0.028 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cCCCccE
Q 022810 62 EDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~~~~D~ 133 (291)
.++.+||=+|++ .|..+..+++.. +++|+++. +++.++.++ +.|.+ .++...-.++. ..+.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~----~lGa~--~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAK----SRGAE--EVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HTTCS--EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHH----HcCCc--EEEECCCchHHHHHHHHccCCccE
Confidence 788999999983 788999999876 88998885 777665554 44542 22222111111 1145898
Q ss_pred EEEcccccccccHHHHHHHHHhcc-ccCeeEEEE
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVH 166 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~ 166 (291)
|+-.-.- ...+..+.+.| +++|+++..
T Consensus 235 v~d~~g~------~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 235 ALDCITN------VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEESSCS------HHHHHHHHHHSCTTCEEEEES
T ss_pred EEECCCc------hHHHHHHHHHhhcCCCEEEEE
Confidence 8864321 35567777888 699998764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=91.71 E-value=1.1 Score=36.71 Aligned_cols=99 Identities=10% Similarity=0.157 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C--
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------~-- 128 (291)
.++++|=.|++.|. ++..|++. |.+|+.++.++..++...+.. + .++.++.+|+.+... .
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 46788888876542 34444444 889999999988766554433 2 268899999987431 1
Q ss_pred CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+..|+++.+...... ++ .-.+.+.+...++.+|.++...
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 478999887644221 11 1224555666677788766543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=91.57 E-value=2.1 Score=35.20 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcC-CHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~-s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. |.+|+.++. +....+...+.+...+. ++.++.+|+.+... .
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRL--GAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876542 34444444 889988765 45555555555555553 78899999987431 0
Q ss_pred -CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEee
Q 022810 129 -ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+..|+++.+...... ++ .-.+.+.+.+.++++|.+++...
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 478999987644221 11 12355666777777887766443
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.50 E-value=1 Score=40.22 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=63.4
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc--ccc-----------
Q 022810 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA--DIS----------- 123 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~--d~~----------- 123 (291)
..++++.+||-.|+ |.|..+..+++.. ++++++++.+++.++.++ +.|.+.+ +... |..
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~----~lGa~~~-i~~~~~~~~~~~~~~~~~~~ 289 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVR----ALGCDLV-INRAELGITDDIADDPRRVV 289 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCCCE-EEHHHHTCCTTGGGCHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----hcCCCEE-Eecccccccccccccccccc
Confidence 56789999999997 3677888888776 889999999988776664 3454221 1111 110
Q ss_pred --------CCc--cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 124 --------TFE--MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 124 --------~~~--~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
... ....+|+|+-...- ..++...+.|+++|.+++.
T Consensus 290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 290 ETGRKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEES
T ss_pred hhhhHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEE
Confidence 000 02468998875331 3567788899999998774
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=91.41 E-value=0.54 Score=40.81 Aligned_cols=98 Identities=10% Similarity=0.141 Sum_probs=58.5
Q ss_pred cCCCCC-CEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc------cccC-Cc--
Q 022810 59 SRLEDG-HTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA------DIST-FE-- 126 (291)
Q Consensus 59 ~~~~~~-~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~------d~~~-~~-- 126 (291)
..++++ .+||-+|+ |.|..+..+++.. +++++++..+++.++..++.+++.|.+. ++.. |+.+ +.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEW 238 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeE--EEecCccchHHHHHHHHHH
Confidence 367788 99999997 4678888888876 7888888655443211223334556532 1211 1111 00
Q ss_pred ---cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
....+|+|+-.-. ..... ...++|+++|+++..
T Consensus 239 t~~~~~g~Dvvid~~G------~~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVG------GKSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHTCCEEEEEESSC------HHHHH-HHHHTSCTTCEEEEC
T ss_pred hhccCCCceEEEECCC------chhHH-HHHHHhccCCEEEEe
Confidence 1246898886432 12233 667999999998764
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.35 E-value=1.7 Score=35.85 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~- 128 (291)
.|+.+|--|++.|. .+..|++. |++|+.+|.+++.++.+.+.+.+.+. ++..+.+|+.+.. ..
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 47777777776553 34445554 89999999999988888777777765 7888899987742 11
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
++.|+++.+.-+
T Consensus 85 G~iDiLVNNAG~ 96 (255)
T 4g81_D 85 IHVDILINNAGI 96 (255)
T ss_dssp CCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 578999987744
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.33 E-value=2.8 Score=30.15 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=50.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-CCCccEEEE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~-~~~~D~v~~ 136 (291)
+++|+=+|+| ..+..+++.+ .+.+|+++|.+++.++.+.+ .. .+.++.+|..+.. . ...+|+|+.
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EI---DALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HC---SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---hc---CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 4689989885 3333333221 27899999999876544332 11 3456677765421 1 156899887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
..... .....+..+.+.+.++ .+++
T Consensus 76 ~~~~~---~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 76 VTGKE---EVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CCSCH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred eeCCc---hHHHHHHHHHHHcCCC-EEEE
Confidence 64321 2223444455556775 4444
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.30 E-value=2.1 Score=35.77 Aligned_cols=102 Identities=7% Similarity=0.063 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC--HHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS--KTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s--~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------- 127 (291)
.++++|=.|++.|. ++..|++. |.+|+.++.+ ....+.+.+.....+. ++.++.+|+.+...
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYARE--GADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHH
Confidence 46788888876542 34444444 8899999876 3344444455555443 78889999887421
Q ss_pred C-CCccEEEEcccccc----c-----cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 128 E-ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~----~-----~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. +..|+++.+..... + ++ ...+++.+...++.+|.++...
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 1 47899998775422 1 11 2235566667777888766643
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.14 Score=45.29 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~ 105 (291)
++.+|+=+|+| .|..+..++... |++|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence 57899999998 466666666666 8899999999986655543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.27 E-value=2.7 Score=34.71 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC-HHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s-~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. |.+|+.++.+ ....+...+.+...+. ++.++.+|+.+... .
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALE--GAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence 47788988886542 34445544 8899888544 4555555555555443 78899999987431 0
Q ss_pred -CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 129 -ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+..|+++.+..+... ++ ...+++.+.+.|+++|.++...
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 478999987644221 11 2235566667777788766643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.58 Score=41.66 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=58.7
Q ss_pred CCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022810 64 GHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 64 ~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~ 137 (291)
..+|+=+|+|. |.......... +..|+++|.+++.++.+++ . .+.++.+|+.+.. .. ...|+|++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~----~---g~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHH----T---TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHh----C---CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 45788888863 33222222222 7899999999998776653 3 3567889988743 12 578888775
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..- ......+....+.+.|+..+++...
T Consensus 76 ~~~---~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 76 IDD---PQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp CSS---HHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCC---hHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 321 1223344555666788877776544
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=4.2 Score=33.29 Aligned_cols=76 Identities=8% Similarity=-0.049 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. +.+|+.++.++..++.+.+.+.. .+..++.++.+|+.+... .
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46788888876552 34445544 88999999999887777666655 333358899999987431 1
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 85 ~g~id~lvnnAg~ 97 (265)
T 3lf2_A 85 LGCASILVNNAGQ 97 (265)
T ss_dssp HCSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 478999987754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=90.86 E-value=2.5 Score=35.89 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~----------~ 128 (291)
.+.+||=.|++.|. ++..|+++ |.+|++++.++..++.+.+.+...+. .++.++.+|+.+... .
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 46788988876552 34444444 88999999999888777776666554 268899999987431 0
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
+..|+++.+..+
T Consensus 85 ~g~id~lv~nAg~ 97 (319)
T 3ioy_A 85 FGPVSILCNNAGV 97 (319)
T ss_dssp TCCEEEEEECCCC
T ss_pred CCCCCEEEECCCc
Confidence 467999987754
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.21 Score=43.97 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=31.1
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIE 104 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~ 104 (291)
++.+|+=+|+| .|..+..+++.+ |++|+++|.++...+.++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~ 212 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVE 212 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 68899999998 455566666666 789999999987655543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=0.99 Score=41.08 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
..++.+|+=+|+| .|......++.+ +.+|+++|.++...+.++ ..|. .+ .++.+. -...|+|+....
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~----~~Ga---~~--~~l~e~--l~~aDvVi~atg 338 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAM----MEGF---DV--VTVEEA--IGDADIVVTATG 338 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHH----HTTC---EE--CCHHHH--GGGCSEEEECSS
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----HcCC---EE--ecHHHH--HhCCCEEEECCC
Confidence 4678999999997 355555555555 789999999998655443 3343 22 233222 146799987643
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEE
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
-.++-+ ....+.|||||+++..
T Consensus 339 t~~~i~-----~~~l~~mk~ggilvnv 360 (494)
T 3ce6_A 339 NKDIIM-----LEHIKAMKDHAILGNI 360 (494)
T ss_dssp SSCSBC-----HHHHHHSCTTCEEEEC
T ss_pred CHHHHH-----HHHHHhcCCCcEEEEe
Confidence 222211 2455668999987654
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.72 E-value=1.2 Score=36.59 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~v-D~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|+++ |.+|+.+ +.++...+.+.+.....+. ++.++.+|+.+... .
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQE--GANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876552 34445544 8899888 6666666555555554443 68899999987431 0
Q ss_pred -CCccEEEEccccc-c------c--cc-----------HHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFE-H------M--KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~-~------~--~~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|+++.+.... . . ++ .-.+.+.+...++++|.++..
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 142 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF 142 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4789999876432 1 1 01 123455566667667776654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.47 E-value=2.5 Score=35.07 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcC-CHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----------
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~-s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---------- 128 (291)
.+.++|=.|++.|. ++..|++. |.+|+.++. +++..+...+.+...+. ++.++.+|+.+...-
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAAS--GFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--CCeEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46788888876542 34445544 889999985 77666666555555554 789999999875311
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
++.|+++.+..+
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 378999987754
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.46 E-value=2.8 Score=34.48 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~v-D~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++.|. ++..|++. |.+|+.+ ..++...+...+.....+. ++.++.+|+.+... .
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASD--GFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHH--TCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876553 45556666 8888887 4455555555555555543 78889999987431 0
Q ss_pred -CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 129 -ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+..|+++.+..+... ++ ...+++.+.+.++++|.++...
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 478999987644221 11 1224556666677788766643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.42 E-value=3.4 Score=33.95 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=54.2
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
++||=.|+ |.++..+++.+ .+.+|++++.++....... . .+++++.+|+.++. ...+|.|+.......
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~---~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~ 75 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----A---SGAEPLLWPGEEPS-LDGVTHLLISTAPDS 75 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----H---TTEEEEESSSSCCC-CTTCCEEEECCCCBT
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----h---CCCeEEEecccccc-cCCCCEEEECCCccc
Confidence 68999995 77777776553 2679999998886543322 1 26899999998865 467899998765443
Q ss_pred ccc--HHHHHHHHHh
Q 022810 143 MKN--YQNLLKKISK 155 (291)
Q Consensus 143 ~~~--~~~~l~~~~~ 155 (291)
..+ ...+++.+.+
T Consensus 76 ~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 76 GGDPVLAALGDQIAA 90 (286)
T ss_dssp TBCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHh
Confidence 322 2344444444
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=2.2 Score=36.31 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=56.4
Q ss_pred CCEEEEEcCCc--chHHHHHHHHCCCC--EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-CccCCCccEEEEcc
Q 022810 64 GHTVLDVGCGW--GSLSLYIAQKYSNC--KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEMEASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~--G~~~~~l~~~~p~~--~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~~~~~~D~v~~~~ 138 (291)
..+|.=||+|. +.++..+++. +. +|+++|.+++.++.+. +.|. +.-...|..+ . ....|+|+..-
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~----~~G~--~~~~~~~~~~~~--~~~aDvVilav 102 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAV----DLGI--IDEGTTSIAKVE--DFSPDFVMLSS 102 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHH----HTTS--CSEEESCTTGGG--GGCCSEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHH----HCCC--cchhcCCHHHHh--hccCCEEEEeC
Confidence 46899999883 3455556555 55 9999999998765544 3343 1112334333 1 14579998865
Q ss_pred cccccccHHHHHHHHHhccccCeeEE
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
+.. ....+++++...++|+.+++
T Consensus 103 p~~---~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 103 PVR---TFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp CGG---GHHHHHHHHHHHSCTTCEEE
T ss_pred CHH---HHHHHHHHHhhccCCCcEEE
Confidence 543 34667888888888887543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=0.75 Score=34.50 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-CCCccEEE
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~-~~~~D~v~ 135 (291)
.++.+|+=+|||. |......+... +.+|+++|.+++.++.++. .. .+.++.+|..+.. . ...+|+|+
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~---~~---g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNS---EF---SGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCT---TC---CSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHh---cC---CCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 4578999999863 43333323233 7899999999875433221 11 3456667754421 1 14689888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
....- ......+..+.+.+.+...++.
T Consensus 90 ~~~~~---~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 90 AFTND---DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ECSSC---HHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEeCC---cHHHHHHHHHHHHHCCCCeEEE
Confidence 75432 1222333344444455555544
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=90.01 E-value=0.2 Score=44.52 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHH
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFI 103 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a 103 (291)
++.+|+=+|+| .|..+..+++.+ |++|+++|.++...+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHH
Confidence 47899999998 455666666666 78999999999866554
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=89.91 E-value=5.8 Score=33.34 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEE-EccccCCccC----CCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFEME----ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~-~~d~~~~~~~----~~~D~v 134 (291)
.++++||=.|+ +|.++..+++.+ .+.+|++++.++...+............++.++ .+|+.+...- ..+|+|
T Consensus 9 ~~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 87 (342)
T 1y1p_A 9 PEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp CTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence 35678998876 455555554432 278999999887765544443332211368888 7898764321 468999
Q ss_pred EEccccc
Q 022810 135 YSIEMFE 141 (291)
Q Consensus 135 ~~~~~l~ 141 (291)
+.+....
T Consensus 88 ih~A~~~ 94 (342)
T 1y1p_A 88 AHIASVV 94 (342)
T ss_dssp EECCCCC
T ss_pred EEeCCCC
Confidence 9876543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.90 E-value=1.4 Score=36.12 Aligned_cols=76 Identities=20% Similarity=0.116 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcC-CHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~-s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----------- 128 (291)
.+++||=.|+ +|.++..+++.+ .+.+|++++. ++...+...+.+...+. ++.++.+|+.+...-
T Consensus 20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4668887765 455555554432 2789999988 77766655555554443 688899998874210
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+|+.+...
T Consensus 98 ~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 98 GGLDFVMSNSGM 109 (274)
T ss_dssp SCEEEEECCCCC
T ss_pred CCCCEEEECCCC
Confidence 378999876643
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.83 E-value=4.3 Score=33.41 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~----------~- 128 (291)
.+.++|=.|++ |.++..+++.+ .+.+|++++.++..++...+.+...+. .++.++.+|+.+... .
T Consensus 31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 46788888765 44444444332 278999999998877666666655553 357888999877431 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+.+|+|+.+...
T Consensus 110 g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 110 SGVDICINNAGL 121 (279)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 368999987643
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.42 E-value=2.8 Score=34.38 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEccccCCccC----------
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-~~~~~i~~~~~d~~~~~~~---------- 128 (291)
.++++|=.|++.|. ++..|++. +.+|+.++.++..++.+.+.+.. .+. ++.++.+|+.+...-
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAA--GARLVLSGRDVSELDAARRALGEQFGT-DVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46778877776442 34444444 88999999998887776666554 343 789999999875410
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 96 ~g~id~lv~nAg~ 108 (266)
T 4egf_A 96 FGGLDVLVNNAGI 108 (266)
T ss_dssp HTSCSEEEEECCC
T ss_pred cCCCCEEEECCCc
Confidence 478999987644
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.31 E-value=2.4 Score=31.51 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=54.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCC-HHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIY 135 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s-~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~ 135 (291)
..+|+=+|+ |..+..+++.. .+.+|+++|.+ ++..+...... . ..+.++.+|..+.. .. ...|+|+
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---G-DNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---C-TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---c-CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 346888887 45554444332 27899999997 44333333221 1 24788899987632 11 5789888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+...- ......+....+.+.|...++..
T Consensus 77 ~~~~~---d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 77 ALSDN---DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp ECSSC---HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EecCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 75432 12234445556666777776663
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.26 E-value=0.14 Score=42.47 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=38.0
Q ss_pred eEEEEccccCCc--c-CCCccEEEEccccccc--------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 115 VEIIVADISTFE--M-EASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 115 i~~~~~d~~~~~--~-~~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+++++|..+.. . .+++|+|++.++...- ......+..+.++|+|+|.+++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456788875431 1 2689999999987433 124567788899999999998874
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.08 E-value=2.5 Score=34.88 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC------------HHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS------------KTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s------------~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
.++++|=.|++.|. ++..|++. +.+|+++|.+ ++.++...+.....+. ++.++.+|+.+...
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAAD--GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRES 88 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHH
Confidence 46788888876542 34445544 8899999976 6666655555555554 78999999987431
Q ss_pred ----------C-CCccEEEEccccc
Q 022810 128 ----------E-ASYDRIYSIEMFE 141 (291)
Q Consensus 128 ----------~-~~~D~v~~~~~l~ 141 (291)
. +..|+++.+..+.
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 0 4789999887553
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=88.99 E-value=2.1 Score=35.30 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
+++.+|--|++.|. .+..|++. |++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+... .
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47788888877663 44555555 89999999999998888888877765 78899999987431 1
Q ss_pred CCccEEEEccc
Q 022810 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~v~~~~~ 139 (291)
++.|+++.+.-
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 67899998764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.90 E-value=3.8 Score=34.07 Aligned_cols=98 Identities=10% Similarity=0.026 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.|+.+|--|++.|. .+..|++. |++|+.+|.+++.++.+.+ +.+. ++..+.+|+.+... .
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~--Ga~V~i~~r~~~~l~~~~~---~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIA---EIGG-GAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH---HHCT-TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH---HcCC-CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57788888887663 45555555 8999999999987665543 3343 67788899877421 1
Q ss_pred CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
++.|+++.+.-.... ++ .-...+.+...|+.+|.++..
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 578999887643221 11 223455566777777876553
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=88.75 E-value=0.86 Score=45.12 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCC--EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---------------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNC--KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--------------- 125 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~--~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~--------------- 125 (291)
...+++||-||.|.++.-+.+. |. .+.++|+++.+++..+.|. ++..++..|+.++
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence 4568999999999999999877 65 4779999999776665543 2445566664321
Q ss_pred --ccCCCccEEEEcccccc
Q 022810 126 --EMEASYDRIYSIEMFEH 142 (291)
Q Consensus 126 --~~~~~~D~v~~~~~l~~ 142 (291)
+..+.+|+|+..++-+.
T Consensus 612 ~lp~~~~vDll~GGpPCQ~ 630 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQG 630 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTT
T ss_pred hcccCCCeeEEEEcCCCcc
Confidence 11246899998775433
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=88.41 E-value=2.7 Score=34.46 Aligned_cols=102 Identities=12% Similarity=0.078 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCH---HHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSK---TQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~---~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------- 127 (291)
.++++|=.|++.| ++..+++.+ .|.+|+.++.+. +.++.+.+.+...+. ++.++.+|+.+...
T Consensus 10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTC-EEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678888877644 455554442 278999987543 334444444443343 68899999987431
Q ss_pred C-CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEE
Q 022810 128 E-ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. +..|+++.+..+... ++ ...+.+.+...|+++|.+++.
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 1 478999987653221 11 123455556666777876654
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.95 E-value=3.9 Score=33.35 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCC-cchHH----HHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------
Q 022810 62 EDGHTVLDVGCG-WGSLS----LYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------- 127 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~----~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--------- 127 (291)
.++++||=.|++ +|.++ ..|++. +.+|+.++.+....+.+++.....+ ++.++.+|+.+...
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~ 87 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKRE--GAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLK 87 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHc--CCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHH
Confidence 467899999964 23344 444444 8899999988766655555544443 57888999987431
Q ss_pred C--CCccEEEEcccccc-----------c--cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 128 E--ASYDRIYSIEMFEH-----------M--KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~--~~~D~v~~~~~l~~-----------~--~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. ++.|+++.+..+.. . .+ ...+++.+...++++|.++...
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 0 47899998764422 1 11 1234555666677777766543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.74 E-value=5.1 Score=32.79 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-----C--CCc
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-----E--ASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~-----~--~~~ 131 (291)
.++++|=.|++.|. ++..|++. |.+|+.++.++...+.+.+.+...+. ..+.++.+|+.+... . +..
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAE--GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 46678877765442 33444444 88999999999877776666655532 357888899876421 1 578
Q ss_pred cEEEEcccc
Q 022810 132 DRIYSIEMF 140 (291)
Q Consensus 132 D~v~~~~~l 140 (291)
|+++.+...
T Consensus 87 d~lv~nAg~ 95 (267)
T 3t4x_A 87 DILINNLGI 95 (267)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999987644
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.41 E-value=2.9 Score=34.41 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~------------~ 128 (291)
.++++|=.|++. .++..+++.+ .+.+|++++.++..++.+.+.+...+. ++.++.+|+.+... .
T Consensus 20 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTGGSK-GIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888888754 4444443321 278999999998877666555554443 68889999876421 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 98 g~id~lv~nAg~ 109 (273)
T 1ae1_A 98 GKLNILVNNAGV 109 (273)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 468999987644
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.40 E-value=2.5 Score=35.47 Aligned_cols=88 Identities=13% Similarity=0.001 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCccCCCccEEEEccc
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~-~d~~~~~~~~~~D~v~~~~~ 139 (291)
..+.+|+=+|+|. |......+..+ +.+|+++|.++...+.+ ...+. .... .+..+. -...|+|+..-+
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~----~~~g~---~~~~~~~l~~~--l~~aDvVi~~~p 222 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARI----AEMGM---EPFHISKAAQE--LRDVDVCINTIP 222 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH----HHTTS---EEEEGGGHHHH--TTTCSEEEECCS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHH----HHCCC---eecChhhHHHH--hcCCCEEEECCC
Confidence 3688999999873 44333334344 78999999998754333 23332 3221 122111 156899998776
Q ss_pred ccccccHHHHHHHHHhccccCeeEEE
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+.+.. ...+.++||++++-
T Consensus 223 ~~~i~~------~~l~~mk~~~~lin 242 (293)
T 3d4o_A 223 ALVVTA------NVLAEMPSHTFVID 242 (293)
T ss_dssp SCCBCH------HHHHHSCTTCEEEE
T ss_pred hHHhCH------HHHHhcCCCCEEEE
Confidence 643321 23346788887543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=87.40 E-value=6.1 Score=32.62 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHH-HHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~-~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++ |.++..+++.+ .|.+|++++.++.. .+.+.+.+...+. ++.++.+|+.+... .
T Consensus 28 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35677777765 44444444332 27899999877542 3333344444443 68888999876421 0
Q ss_pred CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+..|+++.+...... ++ ...+++.+.+.|+.+|.++...
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 468999987644221 11 1224455666666677766543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.35 E-value=0.29 Score=41.97 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=41.5
Q ss_pred CeEEE-EccccCCc--cC-CCccEEEEccccccc-----------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 114 NVEII-VADISTFE--ME-ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 114 ~i~~~-~~d~~~~~--~~-~~~D~v~~~~~l~~~-----------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
...++ ++|..+.. .+ +++|+|++.++.... ......+..+.++|+|||.+++.....
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 35677 89986532 22 689999999987432 134567788899999999999875543
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.29 E-value=0.43 Score=41.26 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=55.8
Q ss_pred HHcCCCCCCEEEEEcC-C-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022810 57 ERSRLEDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~ 128 (291)
+...++++.+||=.|+ | .|..+..+++...+.+|++++ ++...+.++ .|.+. ++. +-.++. .+
T Consensus 136 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~~--~~~-~~~~~~~~~~~~~~ 206 (349)
T 4a27_A 136 EVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVTH--LFD-RNADYVQEVKRISA 206 (349)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSSE--EEE-TTSCHHHHHHHHCT
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCcE--EEc-CCccHHHHHHHhcC
Confidence 4567789999999998 3 577777888765457899988 444333332 34322 222 111111 12
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+.+|+|+-.-.- ..+..+.+.|+++|++++..
T Consensus 207 ~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 207 EGVDIVLDCLCG-------DNTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp TCEEEEEEECC--------------CTTEEEEEEEEEEC
T ss_pred CCceEEEECCCc-------hhHHHHHHHhhcCCEEEEEC
Confidence 468988864321 12366789999999988754
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.29 E-value=6.4 Score=32.51 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. |.+|+++|.++...+.+.+.. +. ++.++.+|+.+... .
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADE--GCHVLCADIDGDAADAAATKI---GC-GAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH---CS-SCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc---CC-cceEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788888776542 34445544 889999999987665544333 33 68889999987531 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 102 g~iD~lvnnAg~ 113 (277)
T 3gvc_A 102 GGVDKLVANAGV 113 (277)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987754
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=87.26 E-value=4.6 Score=31.70 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=55.2
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
++||=.|+ +|.++..+++.+ .+.+|++++-++...... . ..+++++.+|+.+.... ..+|+|+.+...
T Consensus 1 MkilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~------~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADR------L-GATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------T-CTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccc------c-CCCceEEecccccccHhhcccCCEEEECCcc
Confidence 36777775 455555554432 278999999988643321 1 13689999999875433 678999987755
Q ss_pred ccc----ccHHHHHHHHHhcccc-CeeEEEE
Q 022810 141 EHM----KNYQNLLKKISKWMKE-DTLLFVH 166 (291)
Q Consensus 141 ~~~----~~~~~~l~~~~~~L~p-gG~l~i~ 166 (291)
.+. .........+.+.++. |+.+++.
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred CCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 311 1122334455555544 4455443
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.21 E-value=6.5 Score=32.03 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~-~~~i~~~~~d~~~~~~----------~- 128 (291)
.+.++|=.|++. .++..+++.+ .+.+|++++.++...+.+.+.+.... ..++.++.+|+.+... .
T Consensus 6 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (267)
T 2gdz_A 6 NGKVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 84 (267)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 466888888754 4444433321 28899999998876554444332211 1258889999887421 0
Q ss_pred CCccEEEEccccc
Q 022810 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~v~~~~~l~ 141 (291)
+..|+++.+....
T Consensus 85 g~id~lv~~Ag~~ 97 (267)
T 2gdz_A 85 GRLDILVNNAGVN 97 (267)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3679999877543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.18 E-value=2.6 Score=33.45 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=53.3
Q ss_pred EEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEcc
Q 022810 66 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIE 138 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~~~ 138 (291)
+|+=+|+ |..+..+++.. .+..|+++|.+++.++...+ .. .+.++.+|..+... . ..+|+|++..
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~---~~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK---KL---KATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---HS---SSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---Hc---CCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 5677776 45555544432 27899999999987654332 12 46788999877421 1 5789888753
Q ss_pred cccccccHHHHHHHHHhccccCeeEEE
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.- ......+..+.+.+.|...++.
T Consensus 74 ~~---d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 74 PR---DEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp SC---HHHHHHHHHHHHHTSCCCEEEE
T ss_pred CC---cHHHHHHHHHHHHHcCCCeEEE
Confidence 22 1223344455555566666554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.18 E-value=3.1 Score=31.88 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=51.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--C-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-C-CCccEE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--S-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-E-ASYDRI 134 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~-~-~~~D~v 134 (291)
+.+|+=+||| ..+..+++.. . +.+|+++|.+++.++.++ ..+ +.++.+|..+.. . . ..+|+|
T Consensus 39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~~g---~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHR----SEG---RNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----HTT---CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHH----HCC---CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 5689999886 3333333321 2 578999999998665543 233 456677765421 1 2 568988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+....- ......+-...+.+.|++.++..
T Consensus 110 i~~~~~---~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 110 LLAMPH---HQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp EECCSS---HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 874321 11112222344455677776653
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=87.18 E-value=1.1 Score=37.39 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=34.1
Q ss_pred EccccCCccCCCccEEEEcccc----cc-c--ccHH----HHHHHHHhccccCeeEEEEeeccC
Q 022810 119 VADISTFEMEASYDRIYSIEMF----EH-M--KNYQ----NLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 119 ~~d~~~~~~~~~~D~v~~~~~l----~~-~--~~~~----~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.+|+......+++|+|+++..- ++ - .|.. -+++.+.++|+|||.+++..+...
T Consensus 195 ~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga 258 (320)
T 2hwk_A 195 RLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA 258 (320)
T ss_dssp CGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred ccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 3455443322679999997632 22 1 2322 256667889999999999877554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=87.17 E-value=3.4 Score=28.64 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=43.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccEEEE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~D~v~~ 136 (291)
+.+|+=+|+| ..+..+++.+ .+ .+|+++|.++...+.+. .. .+.+...|+.+... -..+|+|+.
T Consensus 5 ~~~v~I~G~G--~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~---~~~~~~~d~~~~~~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 5 RWNICVVGAG--KIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RM---GVATKQVDAKDEAGLAKALGGFDAVIS 75 (118)
T ss_dssp CEEEEEECCS--HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TT---TCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred cCeEEEECCC--HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hC---CCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence 5689999994 4444433321 25 78999999987655443 12 46777888765321 156899988
Q ss_pred cccc
Q 022810 137 IEMF 140 (291)
Q Consensus 137 ~~~l 140 (291)
....
T Consensus 76 ~~~~ 79 (118)
T 3ic5_A 76 AAPF 79 (118)
T ss_dssp CSCG
T ss_pred CCCc
Confidence 7643
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=86.97 E-value=2.9 Score=40.31 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC----CCC-EEEEEcCCHHHHHHHHHHH
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY----SNC-KITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~----p~~-~v~~vD~s~~~~~~a~~~~ 107 (291)
...+|+||-||.|+++.-+.+.. ... -+.++|.++.+++.-+.|+
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 45689999999999988887651 012 4679999999877776654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=86.89 E-value=3 Score=33.98 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------C-
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----------~- 128 (291)
.++++|=.|++ |.++..+++.+ .+.+|++++.++..++.+.+.+...+. ++.++.+|+.+... -
T Consensus 8 ~~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788877765 44444443321 278999999998877665555554443 68889999887421 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 86 g~id~lv~~Ag~ 97 (260)
T 2ae2_A 86 GKLNILVNNAGI 97 (260)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999987653
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.67 E-value=1.7 Score=37.67 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=59.0
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc------CCccCCCc
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS------TFEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~------~~~~~~~~ 131 (291)
..++++.+||-+|+| .|..+..+++..++++|+++|.+++.++.++ +.|.+. ++...-. +......+
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~v~~~~~g~g~ 255 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE----RLGADH--VVDARRDPVKQVMELTRGRGV 255 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH----HTTCSE--EEETTSCHHHHHHHHTTTCCE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCCE--EEeccchHHHHHHHHhCCCCC
Confidence 678899999999986 4566777777654679999999998776664 345422 2211101 11111368
Q ss_pred cEEEEcccccccccHHH--HHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQN--LLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~--~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+-...- .. .+....+. ++|+++..
T Consensus 256 Dvvid~~G~------~~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 256 NVAMDFVGS------QATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp EEEEESSCC------HHHHHHGGGGEE--EEEEEEEC
T ss_pred cEEEECCCC------chHHHHHHHhhc--CCCEEEEE
Confidence 998864321 22 45555565 99987764
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=86.52 E-value=9.4 Score=31.73 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=52.9
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEE------EEc---cccCCccC-CCcc
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI------IVA---DISTFEME-ASYD 132 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~------~~~---d~~~~~~~-~~~D 132 (291)
++|.=||+|. | .++..+++. +.+|+++|.+++.++.+++ .+. .+.. ... +..+.... ..+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRK----NGL-IADFNGEEVVANLPIFSPEEIDHQNEQVD 76 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----HCE-EEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHh----CCE-EEEeCCCeeEecceeecchhhcccCCCCC
Confidence 5799999974 3 234445544 7799999999886655443 232 1110 000 11111100 2689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+|+..-.-. ....+++.+...++|+..++.
T Consensus 77 ~vi~~v~~~---~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 77 LIIALTKAQ---QLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp EEEECSCHH---HHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEEEeccc---cHHHHHHHHHHhcCCCCEEEE
Confidence 988765432 346778888888888776544
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.52 E-value=3.8 Score=33.55 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. +.+|+.++.++..++.+.+.+...+. ++.++.+|+.+... .
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57789988886552 44455554 88999999999888777777666554 78999999987431 0
Q ss_pred CCccEEEEccc
Q 022810 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~v~~~~~ 139 (291)
++.|+++.+..
T Consensus 87 g~id~lv~nAg 97 (264)
T 3ucx_A 87 GRVDVVINNAF 97 (264)
T ss_dssp SCCSEEEECCC
T ss_pred CCCcEEEECCC
Confidence 47899998763
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=86.35 E-value=5 Score=31.96 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC--CCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME--ASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~~--~~~D~v~~~ 137 (291)
.+++||=.|+. |.++..+++.+ .+.+|++++.++...+... .. ++ .++.+|+.+.... +..|+|+.+
T Consensus 20 ~~~~ilVtGat-G~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~----~~---~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 20 QGMRVLVVGAN-GKVARYLLSELKNKGHEPVAMVRNEEQGPELR----ER---GASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp -CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----HT---TCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred CCCeEEEECCC-ChHHHHHHHHHHhCCCeEEEEECChHHHHHHH----hC---CCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 47899988863 55544444332 2789999999887544332 11 57 8899999722111 678999987
Q ss_pred cccc
Q 022810 138 EMFE 141 (291)
Q Consensus 138 ~~l~ 141 (291)
....
T Consensus 92 ag~~ 95 (236)
T 3e8x_A 92 AGSG 95 (236)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7553
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=86.16 E-value=15 Score=31.39 Aligned_cols=104 Identities=12% Similarity=0.082 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHh-----------------------CCCCeEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-----------------------ELQNVEII 118 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~-----------------------~~~~i~~~ 118 (291)
+...|+-||||.=.....+... .++..++=||. |+.++.=++.+... .-++..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4679999999988877777654 24678888888 55555433333321 02467889
Q ss_pred EccccCCc----------cC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 119 VADISTFE----------ME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 119 ~~d~~~~~----------~~-~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+|+.+.. .. ...-++++-.++.++ +....+++.+.+... +|.+++..+
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~ 230 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQ 230 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEE
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEec
Confidence 99987631 12 345688888899888 356778888887664 555444343
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=86.10 E-value=4.9 Score=33.32 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=51.9
Q ss_pred CEEEEEcC-Cc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 65 HTVLDVGC-GW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGc-G~-G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
++|.=||+ |. |. ++..+++. +.+|+++|.+++.++.+.+ .++ .. .+..+. ....|+|+..-.-.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~----~g~---~~--~~~~~~--~~~aDvVi~av~~~ 78 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQG----MGI---PL--TDGDGW--IDEADVVVLALPDN 78 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHH----TTC---CC--CCSSGG--GGTCSEEEECSCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHh----cCC---Cc--CCHHHH--hcCCCEEEEcCCch
Confidence 48999999 74 33 44445544 6799999999886655443 333 11 122111 14689998765432
Q ss_pred ccccHHHHHHHHHhccccCeeEE
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
. ...+++.+...++|+..++
T Consensus 79 ~---~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 79 I---IEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp H---HHHHHHHHGGGSCTTCEEE
T ss_pred H---HHHHHHHHHHhCCCCCEEE
Confidence 2 4667777877787776543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=86.08 E-value=2.4 Score=34.51 Aligned_cols=75 Identities=9% Similarity=-0.083 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----------~ 129 (291)
.+.++|=.|++.|. ++..|++. |.+|++++.++..++.+.+.+...+. ++.++.+|+.+...- +
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 46788888877552 34444544 88999999999888777777766654 789999999874311 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+++.+...
T Consensus 83 ~id~lv~nAg~ 93 (252)
T 3h7a_A 83 PLEVTIFNVGA 93 (252)
T ss_dssp CEEEEEECCCC
T ss_pred CceEEEECCCc
Confidence 68999987654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=85.91 E-value=3.5 Score=34.66 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCccCCCccEEEEccc
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~-~d~~~~~~~~~~D~v~~~~~ 139 (291)
..+.+|+=||+|. |......+..+ +.+|+++|.++...+.+. ..+. .... .+..+. -...|+|+..-+
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~----~~g~---~~~~~~~l~~~--l~~aDvVi~~~p 224 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSSAHLARIT----EMGL---VPFHTDELKEH--VKDIDICINTIP 224 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTC---EEEEGGGHHHH--STTCSEEEECCS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH----HCCC---eEEchhhHHHH--hhCCCEEEECCC
Confidence 3688999999873 43333333344 789999999986443322 2332 3221 222221 156899998877
Q ss_pred ccccccHHHHHHHHHhccccCeeEEE
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+.+. . ...+.++||++++-
T Consensus 225 ~~~i~-~-----~~~~~mk~g~~lin 244 (300)
T 2rir_A 225 SMILN-Q-----TVLSSMTPKTLILD 244 (300)
T ss_dssp SCCBC-H-----HHHTTSCTTCEEEE
T ss_pred hhhhC-H-----HHHHhCCCCCEEEE
Confidence 64332 1 24467889886543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=85.90 E-value=6.4 Score=32.57 Aligned_cols=75 Identities=7% Similarity=0.065 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCH-HHHHHHHHHHH-HhCCCCeEEEEccccC----Ccc------
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSK-TQKEFIEEQCR-VLELQNVEIIVADIST----FEM------ 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~-~~~~~a~~~~~-~~~~~~i~~~~~d~~~----~~~------ 127 (291)
.++++|=.|++.|. ++..|++. +.+|++++.++ ...+.+.+.+. ..+ .++.++.+|+.+ ...
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQT--GYRVVIHYHNSAEAAVSLADELNKERS-NTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHH--TCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHHHHHhhcC-CceEEEEeecCCccCCHHHHHHHHH
Confidence 46678877776442 34445555 78999999887 65555544443 333 368899999987 320
Q ss_pred ----C-CCccEEEEcccc
Q 022810 128 ----E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ----~-~~~D~v~~~~~l 140 (291)
. +..|+++.+..+
T Consensus 99 ~~~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 0 378999987643
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.81 E-value=3.6 Score=33.29 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.+.++|=.|++.|. ++..|++. +.+|+.++.++...+.+.+.....+. ++.++.+|+.+... .
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788888876442 34444444 88999999999888777776665543 68899999987431 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+..+
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 378999987654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=85.75 E-value=5.4 Score=31.74 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=49.9
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHH-HhCCCCeEEEEccccCCcc-----C------C
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCR-VLELQNVEIIVADISTFEM-----E------A 129 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~-~~~~~~i~~~~~d~~~~~~-----~------~ 129 (291)
++++|=.|++. .++..+++.+ .+.+|+.++.++..++.+.+... ..+. ++.++.+|+.+... . +
T Consensus 2 ~k~vlITGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASR-GIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGV-EVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC-eEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 45677777654 4444443332 27899999999887776665554 3343 78899999987431 1 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+++.+..+
T Consensus 80 ~id~li~~Ag~ 90 (235)
T 3l77_A 80 DVDVVVANAGL 90 (235)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 78999987754
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=85.56 E-value=1.6 Score=37.49 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCC-CEEEEE-cCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------C-CCc
Q 022810 62 EDG-HTVLDV-GCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E-ASY 131 (291)
Q Consensus 62 ~~~-~~vLDi-GcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~------~-~~~ 131 (291)
.++ .+||=. |+| .|..+..+++.. +++|++++.+++.++.+++ .|.+ .++..+-.++.. . ..+
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~v~~~~~~~g~ 234 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKD----IGAA--HVLNEKAPDFEATLREVMKAEQP 234 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHH----HTCS--EEEETTSTTHHHHHHHHHHHHCC
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC--EEEECCcHHHHHHHHHHhcCCCC
Confidence 345 566654 443 566777777765 7899999999988777653 3442 122221111110 1 368
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+-...- ..+..+.+.|+++|.+++.
T Consensus 235 D~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 235 RIFLDAVTG-------PLASAIFNAMPKRARWIIY 262 (349)
T ss_dssp CEEEESSCH-------HHHHHHHHHSCTTCEEEEC
T ss_pred cEEEECCCC-------hhHHHHHhhhcCCCEEEEE
Confidence 998865332 2346778899999998774
|
| >3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=85.52 E-value=3.1 Score=29.30 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
+..+||=+ |+.|..+..++++ .++.+++.|+ .+........+.... ..||+|++.+=+.
T Consensus 5 ~~mkIlL~-C~aGmSTsllv~k------------------m~~~a~~~gi-~v~i~a~~~~~~~~~~~~~DvvLLgPQV~ 64 (108)
T 3nbm_A 5 KELKVLVL-CAGSGTSAQLANA------------------INEGANLTEV-RVIANSGAYGAHYDIMGVYDLIILAPQVR 64 (108)
T ss_dssp CCEEEEEE-ESSSSHHHHHHHH------------------HHHHHHHHTC-SEEEEEEETTSCTTTGGGCSEEEECGGGG
T ss_pred cCceEEEE-CCCCCCHHHHHHH------------------HHHHHHHCCC-ceEEEEcchHHHHhhccCCCEEEEChHHH
Confidence 45677755 6666666667765 4455556676 466554444443322 6799999976443
Q ss_pred ccccHHHHHHHHHhccccCeeEEE
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+ .+.++.+...+.|+-+.
T Consensus 65 y------~~~~ik~~~~~~~ipV~ 82 (108)
T 3nbm_A 65 S------YYREMKVDAERLGIQIV 82 (108)
T ss_dssp G------GHHHHHHHHTTTTCEEE
T ss_pred H------HHHHHHHHhhhcCCcEE
Confidence 3 34555555556565433
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=85.51 E-value=6.5 Score=30.63 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=43.7
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
++||=.|+ +|.++..+++.+ .+.+|++++-++...+.. . ++++++.+|+.+.... ..+|+|+.+...
T Consensus 1 MkvlVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGA-TGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H-KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcC-CchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 36777775 355444444332 278999999887643221 1 3789999999875433 678999987654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.44 E-value=4 Score=33.23 Aligned_cols=75 Identities=7% Similarity=-0.024 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. |.+|+.++.++...+.+.+.+...+. ++.++.+|+.+... .
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888776552 44555555 88999999999887777776666554 78899999987431 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 88 g~id~lv~nAg~ 99 (256)
T 3gaf_A 88 GKITVLVNNAGG 99 (256)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987644
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.21 E-value=5.7 Score=32.66 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=51.7
Q ss_pred EEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022810 66 TVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~-G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 143 (291)
+|.=||||. |. ++..+++. +.+|+++|.+++.++.+. +.+.. .. ...|..+. ...|+|+..-.-.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~----~~g~~-~~-~~~~~~~~---~~~D~vi~av~~~-- 68 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAV----ERQLV-DE-AGQDLSLL---QTAKIIFLCTPIQ-- 68 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----HTTSC-SE-EESCGGGG---TTCSEEEECSCHH--
T ss_pred EEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----hCCCC-cc-ccCCHHHh---CCCCEEEEECCHH--
Confidence 678899874 32 34444443 679999999988665543 33431 11 23344333 4679988765432
Q ss_pred ccHHHHHHHHHhccccCeeE
Q 022810 144 KNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG~l 163 (291)
....+++.+...++|+..+
T Consensus 69 -~~~~~~~~l~~~~~~~~~v 87 (279)
T 2f1k_A 69 -LILPTLEKLIPHLSPTAIV 87 (279)
T ss_dssp -HHHHHHHHHGGGSCTTCEE
T ss_pred -HHHHHHHHHHhhCCCCCEE
Confidence 3456778888888887654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=85.17 E-value=5.5 Score=32.39 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C--
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------~-- 128 (291)
.++++|=.|++.|. ++..|+++ +.+|+.+|.++...+...+.. + .++.++.+|+.+... .
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVRE--GATVAIADIDIERARQAAAEI---G-PAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 46788888876442 34444444 889999999887655444332 3 268889999987431 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 81 g~id~lv~~Ag~ 92 (259)
T 4e6p_A 81 GGLDILVNNAAL 92 (259)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 378999987654
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=85.06 E-value=2.5 Score=36.68 Aligned_cols=88 Identities=8% Similarity=0.107 Sum_probs=53.5
Q ss_pred CCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 64 GHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.++|.=||+|. | .++..|++. +.+|+++|.+++.++.+. +.+. . ...+..+.... ...|+|+..-+-
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~----~~g~---~-~~~s~~e~~~~a~~~DvVi~~vp~ 91 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALE----REGI---A-GARSIEEFCAKLVKPRVVWLMVPA 91 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHH----TTTC---B-CCSSHHHHHHHSCSSCEEEECSCG
T ss_pred CCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHH----HCCC---E-EeCCHHHHHhcCCCCCEEEEeCCH
Confidence 57899999883 3 244555554 789999999998655443 2232 1 11222222111 345988876544
Q ss_pred cccccHHHHHHHHHhccccCeeEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
. ....++..+...|++|.+++
T Consensus 92 ~---~v~~vl~~l~~~l~~g~iiI 112 (358)
T 4e21_A 92 A---VVDSMLQRMTPLLAANDIVI 112 (358)
T ss_dssp G---GHHHHHHHHGGGCCTTCEEE
T ss_pred H---HHHHHHHHHHhhCCCCCEEE
Confidence 3 45667788888888776544
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.94 E-value=12 Score=33.62 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hC------CC--CeEEEEccccCCc
Q 022810 64 GHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LE------LQ--NVEIIVADISTFE 126 (291)
Q Consensus 64 ~~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-------~~------~~--~i~~~~~d~~~~~ 126 (291)
-.+|.-||+|. | .++..+++. +.+|+++|.+++.++.+++.... .+ .+ ...+ ..|...
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~-- 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE-- 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG--
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH--
Confidence 35799999986 3 344455544 78999999999988877653321 11 00 1222 344322
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
-...|+|+..-+ ....-...+++++...++|+.+++.
T Consensus 112 -~~~aDlVIeaVp-e~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 -LSTVDLVVEAVF-EDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp -GTTCSEEEECCC-SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -HCCCCEEEEcCC-CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 156798887543 2222236688888888888876654
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=84.69 E-value=5.6 Score=32.97 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHH-------HHHHHHHHHHHhCCCCeEEEEccccCCcc-----
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKT-------QKEFIEEQCRVLELQNVEIIVADISTFEM----- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~-------~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----- 127 (291)
.++++|=.|++.|. ++..|++. +.+|++++.++. .++.+.+.....+. ++.++.+|+.+...
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAAD--GANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-QALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTT--TCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-EEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECChhhhhhhhHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHH
Confidence 46788888876552 34444444 789999998765 34444444445444 78899999987431
Q ss_pred -----C-CCccEEEEcccc
Q 022810 128 -----E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 -----~-~~~D~v~~~~~l 140 (291)
. +..|+++.+..+
T Consensus 85 ~~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 0 478999987654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=84.66 E-value=1.4 Score=39.82 Aligned_cols=66 Identities=12% Similarity=0.238 Sum_probs=46.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~ 136 (291)
.++|+=+||| ..+..+++.. .+..|+.+|.+++.++.+.+.+ .+..+.+|..+... . +..|++++
T Consensus 3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY------DLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 4678877775 5666666654 2678999999999876655432 46788999987531 2 67898887
Q ss_pred c
Q 022810 137 I 137 (291)
Q Consensus 137 ~ 137 (291)
.
T Consensus 75 ~ 75 (461)
T 4g65_A 75 V 75 (461)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.43 E-value=5.5 Score=33.74 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC----CCeEEE-----EccccCCccCCCc
Q 022810 63 DGHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----QNVEII-----VADISTFEMEASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~----~~i~~~-----~~d~~~~~~~~~~ 131 (291)
...+|.=||+|. | .++..|++. +.+|+.+ .+++.++..++ .++ ....+. ..|... ...+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~----~g~~~~~~~~~~~~~~~~~~~~~~---~~~~ 87 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEA----TGLRLETQSFDEQVKVSASSDPSA---VQGA 87 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHH----HCEEEECSSCEEEECCEEESCGGG---GTTC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHh----CCeEEEcCCCcEEEeeeeeCCHHH---cCCC
Confidence 356899999983 3 345555554 7799999 88876665543 232 011110 112211 1568
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+..-.-. +...+++.+...++|+..++..
T Consensus 88 D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~ 119 (318)
T 3hwr_A 88 DLVLFCVKST---DTQSAALAMKPALAKSALVLSL 119 (318)
T ss_dssp SEEEECCCGG---GHHHHHHHHTTTSCTTCEEEEE
T ss_pred CEEEEEcccc---cHHHHHHHHHHhcCCCCEEEEe
Confidence 9988765443 4577888898899888766554
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.19 E-value=4.2 Score=32.71 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. +.+|++++.++...+...+.....+. ++.++.+|+.+... .
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35678877765442 34444444 88999999999888777777766654 78999999987431 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
++.|+++.+...
T Consensus 81 ~~id~li~~Ag~ 92 (247)
T 3lyl_A 81 LAIDILVNNAGI 92 (247)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999987654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=84.15 E-value=3.7 Score=33.49 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.+||=.|++ |.++..+++.+ .|.+|++++.++..++.+.+.+...+. ++.++.+|+.+... . +
T Consensus 28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 28 SGQVAVVTGAS-RGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 56788888765 44444444332 288999999999888777777666554 78899999987431 0 4
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|+++.+...
T Consensus 106 ~id~lv~~Ag~ 116 (262)
T 3rkr_A 106 RCDVLVNNAGV 116 (262)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 68999987654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.04 E-value=9.1 Score=31.23 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.++++|=.|++.| ++..+++.+ .+.+|++++.++..++.+.+ ..+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlITGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 5 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVA---ALE-AEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TCC-SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---Hhc-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4567888877544 444443321 27899999998875543322 222 368889999887431 0 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|+++.+...
T Consensus 80 ~iD~lvnnAg~ 90 (263)
T 2a4k_A 80 RLHGVAHFAGV 90 (263)
T ss_dssp CCCEEEEGGGG
T ss_pred CCcEEEECCCC
Confidence 67999987754
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=83.99 E-value=1.7 Score=37.76 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---C-CCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~D~v~~~ 137 (291)
..++||=|||| ..+..+++.. ...+|+.+|.+...++.+++ .+..+..|+.+... . ...|+|++.
T Consensus 15 ~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~--------~~~~~~~d~~d~~~l~~~~~~~DvVi~~ 84 (365)
T 3abi_A 15 RHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVKE--------FATPLKVDASNFDKLVEVMKEFELVIGA 84 (365)
T ss_dssp -CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHTT--------TSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc--------cCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence 45789999995 3443333322 25689999999876654432 35566778766421 1 678999875
Q ss_pred c
Q 022810 138 E 138 (291)
Q Consensus 138 ~ 138 (291)
.
T Consensus 85 ~ 85 (365)
T 3abi_A 85 L 85 (365)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.98 E-value=6.3 Score=33.66 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=53.3
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC----CeE------EEEccccCCccCCCcc
Q 022810 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ----NVE------IIVADISTFEMEASYD 132 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~----~i~------~~~~d~~~~~~~~~~D 132 (291)
++|.=||+|. |. ++..+++. +.+|+++|.+++.++.+++.. ++. ... ....|..+. ...+|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRG---AIIAEGPGLAGTAHPDLLTSDIGLA--VKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHT---SEEEESSSCCEEECCSEEESCHHHH--HTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHhcC---CeEEeccccccccccceecCCHHHH--HhcCC
Confidence 5899999984 32 34445543 789999999988765544321 110 000 011121110 14689
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+|+..-.-. ....+++.+...++++..++.
T Consensus 78 ~vi~~v~~~---~~~~~~~~l~~~l~~~~~vv~ 107 (359)
T 1bg6_A 78 VILIVVPAI---HHASIAANIASYISEGQLIIL 107 (359)
T ss_dssp EEEECSCGG---GHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEEeCCch---HHHHHHHHHHHhCCCCCEEEE
Confidence 888765443 236778888888888775544
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=83.90 E-value=3 Score=33.67 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~ 129 (291)
.+++||=.|+ +|.++..+++.+ .+.+|++++.++...+...+.+...+. ++.++.+|+.+...- +
T Consensus 10 ~~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3567877765 466555555432 378999999998876665555554443 688889998764210 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
.+|+|+.+...
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=83.74 E-value=4.3 Score=33.54 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. |.+|++++.++..++.+.+.+...+. ++.++.+|+.+... .
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888876542 34445544 88999999999887777666665554 78999999987431 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
++.|+++.+...
T Consensus 100 g~id~lv~nAg~ 111 (279)
T 3sju_A 100 GPIGILVNSAGR 111 (279)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 478999987654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.57 E-value=4 Score=33.39 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.++++|=.|++. .++..+++.+ .+.+|+.++.++..++.+.+.....+..++.++.+|+.+... . +
T Consensus 9 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (262)
T 3pk0_A 9 QGRSVVVTGGTK-GIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG 87 (262)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 466788777654 4444443322 278999999999887777666665543478999999987431 0 4
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+++.+...
T Consensus 88 ~id~lvnnAg~ 98 (262)
T 3pk0_A 88 GIDVVCANAGV 98 (262)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=83.38 E-value=4.6 Score=32.85 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~------------~ 128 (291)
.+++||=.|++ |.++..+++.+ .+.+|++++.++..++...+.+...+. ++.++.+|+.+... .
T Consensus 13 ~~k~vlITGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 13 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35678877664 55555544432 278999999998776665555554443 68889999876421 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+|+.+...
T Consensus 91 ~~id~li~~Ag~ 102 (266)
T 1xq1_A 91 GKLDILINNLGA 102 (266)
T ss_dssp TCCSEEEEECCC
T ss_pred CCCcEEEECCCC
Confidence 467999877643
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=83.19 E-value=5.3 Score=32.22 Aligned_cols=102 Identities=11% Similarity=0.069 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----------
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~v-D~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---------- 128 (291)
.++++|=.|++.|. ++..|++. +.+|+.+ ..+....+...+.....+. ++.++.+|+.+....
T Consensus 6 ~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 6 KGKVALVTGASRGIGRAIAKRLAND--GALVAIHYGNRKEEAEETVYEIQSNGG-SAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCSHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHHHHHhcCC-ceEEEecCcCCHHHHHHHHHHHHHH
Confidence 46788877776542 34444444 7888775 5555555555555555443 688888998774310
Q ss_pred -------CCccEEEEccccccc--------cc-----------HHHHHHHHHhccccCeeEEEEe
Q 022810 129 -------ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -------~~~D~v~~~~~l~~~--------~~-----------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+.|+++.+..+... ++ ...+++.+...|+++|.++...
T Consensus 83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~is 147 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS 147 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeC
Confidence 138999987644221 11 1224455556666778766543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.08 E-value=4.3 Score=33.35 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=51.9
Q ss_pred CCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 64 GHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 64 ~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
++++|=.|++.|. ++..|++. |.+|+.++.++..++.+.+.+...+. ++.++.+|+.+... . +
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVA--GAKILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5677877776442 33444444 88999999999888777777666554 68888999887421 1 4
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+++.+..+
T Consensus 81 ~iD~lVnnAG~ 91 (264)
T 3tfo_A 81 RIDVLVNNAGV 91 (264)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987644
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=82.97 E-value=6.1 Score=31.87 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~ 129 (291)
.+.+||=.|++ |.++..+++.+ .+.+|++++.++...+...+.+...+. ++.++.+|+.+...- +
T Consensus 12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH-DVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888765 44444444332 278999999998776655555554443 688999998874310 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+|+.+...
T Consensus 90 ~id~vi~~Ag~ 100 (260)
T 3awd_A 90 RVDILVACAGI 100 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68999987643
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=82.94 E-value=4.6 Score=33.40 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.+||=.|++ |.++..+++.+ .|.+|++++.++..++...+.....+..++.++.+|+.+... . +
T Consensus 27 ~~k~vlITGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 105 (286)
T 1xu9_A 27 QGKKVIVTGAS-KGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 105 (286)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 36788877765 44444444332 278999999998877766665555554468889999887421 0 3
Q ss_pred CccEEEEc
Q 022810 130 SYDRIYSI 137 (291)
Q Consensus 130 ~~D~v~~~ 137 (291)
..|+++.+
T Consensus 106 ~iD~li~n 113 (286)
T 1xu9_A 106 GLDMLILN 113 (286)
T ss_dssp SCSEEEEC
T ss_pred CCCEEEEC
Confidence 78999977
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=82.87 E-value=6.8 Score=31.98 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=53.1
Q ss_pred CCEEEEEcCCc-ch-HHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 64 GHTVLDVGCGW-GS-LSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~-G~-~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
+++|.=||||. |. ++..+++. +.+ |+++|.+++..+.+.+. .+ +.. ..|..+.. ...|+|+..-.-
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~~---~g---~~~-~~~~~~~~--~~~Dvvi~av~~ 78 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQK---VE---AEY-TTDLAEVN--PYAKLYIVSLKD 78 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHHH---TT---CEE-ESCGGGSC--SCCSEEEECCCH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHH---cC---Cce-eCCHHHHh--cCCCEEEEecCH
Confidence 46899999983 33 44455554 566 89999998866544332 23 222 23433321 457999876543
Q ss_pred cccccHHHHHHHHHhccccCeeEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
. ....+++.+...+++|..++-
T Consensus 79 ~---~~~~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 79 S---AFAELLQGIVEGKREEALMVH 100 (266)
T ss_dssp H---HHHHHHHHHHTTCCTTCEEEE
T ss_pred H---HHHHHHHHHHhhcCCCcEEEE
Confidence 3 235677777777777665443
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=82.76 E-value=13 Score=30.67 Aligned_cols=89 Identities=26% Similarity=0.339 Sum_probs=53.0
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
++|.=||+|. | .++..+++..++.+|+++|.+++.++.+.+ .+... ....|..+.. ...|+|+..-.-..
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~~~~~~~~~~--~~aDvVilavp~~~ 78 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD--EATADFKVFA--ALADVIILAVPIKK 78 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS--EEESCTTTTG--GGCSEEEECSCHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc--cccCCHHHhh--cCCCEEEEcCCHHH
Confidence 5799999984 3 345555555335799999999886654432 33311 1223333221 45798887654322
Q ss_pred cccHHHHHHHHHhc-cccCeeEE
Q 022810 143 MKNYQNLLKKISKW-MKEDTLLF 164 (291)
Q Consensus 143 ~~~~~~~l~~~~~~-L~pgG~l~ 164 (291)
...+++.+... ++++.+++
T Consensus 79 ---~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 79 ---TIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp ---HHHHHHHHHTSCCCTTCEEE
T ss_pred ---HHHHHHHHHhcCCCCCCEEE
Confidence 35667777777 77765544
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.74 E-value=6.2 Score=32.33 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.+||=.|++ |.++..+++.+ .+.+|++++.++...+...+.+...+. ++.++.+|+.+... . +
T Consensus 30 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 30 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 46788888765 44544444332 278999999998877666665555443 78899999887421 0 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
.+|+|+.+...
T Consensus 108 ~iD~li~~Ag~ 118 (272)
T 1yb1_A 108 DVSILVNNAGV 118 (272)
T ss_dssp CCSEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 68999987644
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=82.49 E-value=4.3 Score=33.54 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. +.+|+.++.+++.++.+.+.+...+. ++.++.+|+.+... .
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~ 107 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEA--GAQVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQPDQVRGMLDQMTGEL 107 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46788888876542 34444544 88999999998887777776666554 78889999987431 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 108 g~iD~lvnnAg~ 119 (276)
T 3r1i_A 108 GGIDIAVCNAGI 119 (276)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999987754
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=82.33 E-value=7.5 Score=31.43 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CCCCeEEEEccccCCcc----------
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--ELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~~~i~~~~~d~~~~~~---------- 127 (291)
.++++|=.|++.|. ++..|++. |.+|+.++.++..++.+.+.+... +..++.++.+|+.+...
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATD--GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHH--TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 46788888876552 45555655 889999999998877777666554 22468899999987431
Q ss_pred C-CCccEEEEcccc
Q 022810 128 E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ~-~~~D~v~~~~~l 140 (291)
. +..|+++.+..+
T Consensus 84 ~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 84 KYGAVDILVNAAAM 97 (250)
T ss_dssp HHCCEEEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 1 478999987754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=82.21 E-value=7 Score=32.45 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEc-CCHHHHHHHHHHHH-HhCCCCeEEEEccccCCc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGIC-NSKTQKEFIEEQCR-VLELQNVEIIVADISTFE 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD-~s~~~~~~a~~~~~-~~~~~~i~~~~~d~~~~~ 126 (291)
.++++|=.|++. .++..+++.+ .+.+|++++ .++..++.+.+.+. ..+ .++.++.+|+.+..
T Consensus 8 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 8 TVPVALVTGAAK-RLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA 73 (291)
T ss_dssp CCCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCCcc
Confidence 356777777654 4444444332 278999999 88877766655554 333 36888999988754
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=82.11 E-value=23 Score=31.75 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=57.6
Q ss_pred CCEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHH-HHHHHH---HHHhCC----------CCeEEEEccccCCcc
Q 022810 64 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQK-EFIEEQ---CRVLEL----------QNVEIIVADISTFEM 127 (291)
Q Consensus 64 ~~~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~-~~a~~~---~~~~~~----------~~i~~~~~d~~~~~~ 127 (291)
-.+|.=||+|. +.++..+++. +.+|+++|.+++.. +..+++ ..+.+. .++++ ..|...+
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~dl~al-- 128 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TSDFHKL-- 128 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ESCGGGC--
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eCCHHHH--
Confidence 36899999995 3456666655 88999999999821 111111 112221 23443 3444321
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
...|+|+..-+ ....-...+++++...++|+.++...+
T Consensus 129 -~~aDlVIeAVp-e~~~vk~~v~~~l~~~~~~~aIlasnT 166 (460)
T 3k6j_A 129 -SNCDLIVESVI-EDMKLKKELFANLENICKSTCIFGTNT 166 (460)
T ss_dssp -TTCSEEEECCC-SCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred -ccCCEEEEcCC-CCHHHHHHHHHHHHhhCCCCCEEEecC
Confidence 46798887532 222224568899999999988765433
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=81.97 E-value=7.3 Score=31.38 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. ++..|++. |.+|++++.++..++.+.+.+...+. ++.++.+|+.+... .
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAE--GAAVAIAARRVEKLRALGDELTAAGA-KVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36688888876442 33444444 88999999998877666655555443 68889999877421 0
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 83 g~id~lv~nAg~ 94 (247)
T 2jah_A 83 GGLDILVNNAGI 94 (247)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999987643
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=81.96 E-value=11 Score=31.66 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc-
Q 022810 63 DGHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM- 139 (291)
Q Consensus 63 ~~~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~- 139 (291)
+..+|.=||+|. | ..+..++......+++.+|++++....+..... ...+++.. ..|...+ ...|+|+...-
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~-~~~~~i~~-t~d~~~l---~~aD~Vi~aag~ 87 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI-FNLPNVEI-SKDLSAS---AHSKVVIFTVNS 87 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH-HTCTTEEE-ESCGGGG---TTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh-hcCCCeEE-eCCHHHH---CCCCEEEEcCCC
Confidence 346899999995 3 255556655323489999999864444444433 22235554 3554332 46799988641
Q ss_pred -----------ccccccHHHHHHHHHhccccCeeEEEE
Q 022810 140 -----------FEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 140 -----------l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...++-...+++.+.+.. |++++++.
T Consensus 88 ~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 124 (303)
T 2i6t_A 88 LGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA 124 (303)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 222222455666666654 99997663
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=81.96 E-value=8 Score=32.05 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=57.1
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C--C---------CCeEEEEccccC
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E--L---------QNVEIIVADIST 124 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~--~---------~~i~~~~~d~~~ 124 (291)
.+|.=||+|. | .++..+++. +.+|+++|.+++.++.+.+..... + + .++.. ..|..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~ 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence 5788899884 2 234444544 889999999999888777653221 1 1 11232 233322
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022810 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 125 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
. -...|+|+..-+- .......+++++...++|+.+++
T Consensus 82 ~--~~~aDlVi~av~~-~~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 82 A--VKDADLVIEAVPE-SLDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp H--TTTCSEEEECCCS-CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred H--hccCCEEEEeccC-cHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 1457988875332 22234667888888888877654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=81.90 E-value=11 Score=30.66 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++. |.++..+++.+ .+.+|++++.++...+.+.+.....+ +..++.+|+.+... .
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467888888752 44444444332 27899999987632222222222222 34678889876421 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 86 g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 86 PKFDGFVHSIGF 97 (265)
T ss_dssp SSEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 368999987654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=81.89 E-value=2.9 Score=45.79 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=65.6
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEEccccC----CccCC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADIST----FEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~-~~~~d~~~----~~~~~ 129 (291)
....+++|.+||=.|+ |.|..++.+++.. |++|++++.+++..+.+++.....+.+.+- ....++.+ .....
T Consensus 1661 ~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~-Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~ 1739 (2512)
T 2vz8_A 1661 VRGRMQPGESVLIHSGSGGVGQAAIAIALSR-GCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGK 1739 (2512)
T ss_dssp TTTCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSC
T ss_pred HHhcCCCCCEEEEEeCChHHHHHHHHHHHHc-CCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCC
Confidence 3446789999999974 5788888899876 889999999888766665432222322211 00111111 01114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+-.. . ...+....++|+|+|+++..
T Consensus 1740 GvDvVld~~-----g--~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1740 GVDLVLNSL-----A--EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp CEEEEEECC-----C--HHHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEECC-----C--chHHHHHHHhcCCCcEEEEe
Confidence 589988642 1 35688889999999997764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 291 | ||||
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 1e-44 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 9e-43 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 4e-40 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 5e-19 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-16 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-14 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 3e-14 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 9e-13 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 2e-10 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 2e-09 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-09 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 5e-09 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 6e-09 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 1e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-08 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 3e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-08 | |
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 7e-08 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-06 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 8e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 8e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 9e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-05 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 2e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 3e-05 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 3e-05 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 6e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-04 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 3e-04 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 4e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 5e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 6e-04 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 0.001 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.002 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.002 |
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 151 bits (381), Expect = 1e-44
Identities = 64/295 (21%), Positives = 107/295 (36%), Gaps = 31/295 (10%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
HY+ FFKL L YSC YF TLE+A+ A +L ++ LE G T+LD+G
Sbjct: 10 RSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIG 69
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWGS + +Y + + G+ S+ Q + ++ + + E +
Sbjct: 70 CGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG-WEEFDEPV 127
Query: 132 DRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH------ 176
DRI S+ FEH + Y KK +D + +H
Sbjct: 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLT 187
Query: 177 --FEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQTSEEWLKRM 233
+I F GG +P + + Y+ + V+ + G +Y T W +
Sbjct: 188 SPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADAL 247
Query: 234 DNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
+ + G++ + + ++LF V F K
Sbjct: 248 QAHKDEAIAL----KGQE----TCDIYMHYLRGCSDLFRDKYT---DVCQFTLVK 291
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 146 bits (368), Expect = 9e-43
Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 24/288 (8%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY+L FF+L L YSC YF TL++A+ A ++L + L+ G T+LDVG
Sbjct: 11 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVG 70
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG+ + +KY + + + L++ +++A F+
Sbjct: 71 CGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP--V 128
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC--------HKTFAYHFEDTN 181
DRI SI FEH + Y + + D ++ +H + F
Sbjct: 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFAR 188
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQTSEEWLKRMDNNLASI 240
+I F GG +PS ++ V HYA+T + W + N
Sbjct: 189 FLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQA 248
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
+ Q+ + + + AE+F V F +K
Sbjct: 249 IAL--------QSEEVYERYMKYLTGCAEMFRIGYI---DVNQFTCQK 285
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 138 bits (349), Expect = 4e-40
Identities = 62/288 (21%), Positives = 105/288 (36%), Gaps = 24/288 (8%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY++ FF L YSC YF TLE+A+ A ++L ++ L+ G T+LD+G
Sbjct: 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIG 60
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG+ + + + G+ SK Q E+ ++ ++ +
Sbjct: 61 CGWGTTMRRA-VERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG-WEDFAEPV 118
Query: 132 DRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHH--------FCHKTFAYHFEDTN 181
DRI SIE FEH NY + K+ M D + V + FE
Sbjct: 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETAR 178
Query: 182 DDDWITKYFFTGGTMPSANLLLYFQDDVSVVD-HWLVNGKHYAQTSEEWLKRMDNNLASI 240
+I F GG +PS +++ + L HY +T W + +N
Sbjct: 179 FIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKA 238
Query: 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288
+ + + + + F + + K
Sbjct: 239 IEVT--------SEEVYNRYMKYLRGCEHYFTDEM---LDCSLVTYLK 275
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 81.9 bits (201), Expect = 5e-19
Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 11/222 (4%)
Query: 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 108
+ R++ G +LD+G G G + A+ + TGI S + +
Sbjct: 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAE 77
Query: 109 VLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167
L + V I D + + D + + + +++ +K ++ +
Sbjct: 78 ELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 137
Query: 168 FCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQD-DVSVVDHWLVN----GKHY 222
+ T + T + L+ F D VV+ L + ++
Sbjct: 138 PYWR----QLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYE 193
Query: 223 AQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFF 264
A + ++ N ++ Y R F
Sbjct: 194 AAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECF 235
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.0 bits (189), Expect = 1e-16
Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 42/274 (15%)
Query: 7 TDKAKEQHYELPTSFFKLVL--------GKYFKYSCCYFSDASKTLEDAEKAMLELYCER 58
E ++P SF L Y + ++ + L ++
Sbjct: 152 IIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQ 211
Query: 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ----- 113
+L+ G T +D+G G G+ + A + G + Q L+ +
Sbjct: 212 CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271
Query: 114 ------NVEIIVADISTFEMEASYDR--IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
+ + + + + + + F ++ ++KI + K +
Sbjct: 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKI-- 329
Query: 166 HHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQT 225
K+ N + + F +D VS W +G Y
Sbjct: 330 --ISLKSLRSLTYQIN--FYNVENIF---NRLKVQRYDLKEDSVS----WTHSGGEY--- 375
Query: 226 SEEWLKRMDNNL--ASIKPIMESTYGKDQAVKWT 257
++ + ++ + P + VK+T
Sbjct: 376 ---YISTVMEDVDESLFSPAARGRRNRGTPVKYT 406
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 2e-14
Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 37/242 (15%)
Query: 14 HYELPTSFFKLVLGK-------YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHT 66
+ T + +L + + Y + + + ++ + ++ D
Sbjct: 95 NTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDL 154
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ---------NVEI 117
+D+G G G + L +A + G+ + ++ E R +
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214
Query: 118 IVADISTFEMEASYDR--IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 175
D + E + + F + LK+ MKE + +
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL-NF 273
Query: 176 HFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDN 235
N D T L + VS W Y +L +D
Sbjct: 274 RINSRNLSDIGTIMRVV--------ELSPLKGSVS----WTGKPVSY------YLHTIDR 315
Query: 236 NL 237
+
Sbjct: 316 TI 317
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.4 bits (169), Expect = 3e-14
Identities = 44/231 (19%), Positives = 64/231 (27%), Gaps = 5/231 (2%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
L VLDVG G G L ++ A K K+ GI S ++ V
Sbjct: 27 HNRHLFKDKVVLDVGSGTGILCMFAA-KAGARKVIGIECSSISDYAVKIVKANKLDHVVT 85
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172
II + E+ I E + +L KW+ D L+F
Sbjct: 86 IIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYV 145
Query: 173 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
A D G M + + V VVD + +
Sbjct: 146 TAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTV 205
Query: 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTH 283
+L P D Y+ F + G++ E TH
Sbjct: 206 KVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTH 256
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (158), Expect = 9e-13
Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 6/232 (2%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ + VLDVGCG G LS++ A+ K+ G+ S+ + ++ +
Sbjct: 29 QNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTIT 87
Query: 117 IIVADISTFEMEASYDRIYSIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFCHKT 172
+I I + + E + + ++L +K++ + ++
Sbjct: 88 LIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISL 147
Query: 173 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
A + + D G M + + V V+D + + +
Sbjct: 148 VAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTT 207
Query: 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIA-VAELFGYNNGEEWMVTH 283
++L Y+ +F ++ G + TH
Sbjct: 208 SISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTH 259
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (139), Expect = 2e-10
Identities = 36/226 (15%), Positives = 65/226 (28%), Gaps = 7/226 (3%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
VLDVGCG G LS++ A K+ + G+ S + E + ++ +
Sbjct: 39 DKIVLDVGCGTGILSMFAA-KHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE 97
Query: 124 TFEMEASYDRIYSIEM----FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED 179
+ I E + +L ++ E L+F
Sbjct: 98 DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ 157
Query: 180 TNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS 239
D+ G L+ + V V+ VN + ++LA
Sbjct: 158 YKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAF 217
Query: 240 IKPIMESTYGKDQAVKWTVYWRTFFIA--VAELFGYNNGEEWMVTH 283
+ +D ++ F A ++ G TH
Sbjct: 218 KSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTH 263
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 54.4 bits (130), Expect = 2e-09
Identities = 13/119 (10%), Positives = 34/119 (28%)
Query: 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109
A + + ++ +L +G G+ ++A + I + + + C
Sbjct: 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE 120
Query: 110 LELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168
E + A+ E + L+K ++K+ +
Sbjct: 121 RENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 54.2 bits (129), Expect = 3e-09
Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 9/141 (6%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110
L L + + H VLD+G G G +L + + G+ +K E +
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK 61
Query: 111 ELQNVEIIVADISTFEMEASY-DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
++NV + D I H + + ++++++ +K+D +
Sbjct: 62 GVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH- 120
Query: 170 HKTFAYHFEDTNDDDWITKYF 190
Y ED D+++
Sbjct: 121 -----YAPEDPVLDEFVNHLN 136
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 53.6 bits (127), Expect = 5e-09
Identities = 26/257 (10%), Positives = 74/257 (28%), Gaps = 14/257 (5%)
Query: 12 EQHYELPTS---FFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER----SRLEDG 64
E +Y+ S +F + G+ + +A E L+
Sbjct: 9 EIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQ 68
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADI 122
LD+G G+G + ++ +K+ I + + ++ L + +
Sbjct: 69 AKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 127
Query: 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
+ SYD I+S + F H + + ++ ++ +K ++ + + ++
Sbjct: 128 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK---EDGIDKSSI 184
Query: 183 DDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKP 242
+ + L + + + + + + I
Sbjct: 185 QPILDRIKLHDMGSLGLYRSLAKECGLVTL-RTFSRPDSLVHHYSKVKAELIKRSSEIAS 243
Query: 243 IMESTYGKDQAVKWTVY 259
+ + +
Sbjct: 244 FCSPEFQANMKRGLEHW 260
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 53.2 bits (127), Expect = 6e-09
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 112
E + V+D+ G G LSL IA Y K+ I +F+ E + ++
Sbjct: 97 ERVRMAKVAKPDELVVDMFAGIGHLSLPIA-VYGKAKVIAIEKDPYTFKFLVENIHLNKV 155
Query: 113 QN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171
++ + D F E DRI + ++ + K K+ ++ H+ +
Sbjct: 156 EDRMSAYNMDNRDFPGENIADRI----LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPE 211
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 53.0 bits (126), Expect = 1e-08
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL 112
L ++ ++D GCG+G L L + K TGI + +T E R+
Sbjct: 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-LP 76
Query: 113 QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172
+ E + D + E+ YD HM + +L+K+ +K+ + +
Sbjct: 77 YDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWIS 136
Query: 173 FAYHF 177
+
Sbjct: 137 NMASY 141
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125
LD+GCG G SLY+A + + +E L N++ + D++T
Sbjct: 33 RTLDLGCGNGRNSLYLAANGYDVTA--WDKNPASMANLERIKAAEGLDNLQTDLVDLNTL 90
Query: 126 EMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 171
+ YD I S + + + L+ + + K +
Sbjct: 91 TFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDT 138
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 50.6 bits (120), Expect = 3e-08
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 11/129 (8%)
Query: 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 102
T + ++ L + +DVGCG G ++ + ++ I +
Sbjct: 17 TAMEVRCLIMCL----AEPGKNDVAVDVGCGTGGVT--LELAGRVRRVYAIDRNPEAIST 70
Query: 103 IEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 160
E + L NV ++ D + D ++ + I +K
Sbjct: 71 TEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL---RIIKDKLKPG 127
Query: 161 TLLFVHHFC 169
+ V
Sbjct: 128 GRIIVTAIL 136
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 50.8 bits (120), Expect = 3e-08
Identities = 26/205 (12%), Positives = 57/205 (27%), Gaps = 6/205 (2%)
Query: 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVL 110
L + + L+ VLDV G G ++ A K+ ++ K
Sbjct: 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG 61
Query: 111 ELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170
Q + + + + H N + + + + +K+ L +
Sbjct: 62 HQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121
Query: 171 KTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWL 230
N + Y S L + + + + ++ H E+W
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE---LHCFHKTFIFEDWC 178
Query: 231 KRMDNNLASIKPIMESTYGKDQAVK 255
RM+ + + + K
Sbjct: 179 DRMNVTTEKKQELSDFIKSKPTEYY 203
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 49.9 bits (119), Expect = 7e-08
Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 36/207 (17%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE--------------- 101
ER+ + V+D+GCG G S Y + ++ G+ E
Sbjct: 60 ERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRL 119
Query: 102 FIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
+ + + ++ DI + + ++ +L + W+ +T
Sbjct: 120 QSGVDVFFIPPERCDTLLCDIGESSPNPTVEAGRTLR----------VLNLVENWLSNNT 169
Query: 162 LLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM--PSANLLLYFQDDVSVVDHWLVNG 219
FC K + + + G + P + + VS +V+
Sbjct: 170 -----QFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNSTHEMYWVSNASGNIVSS 224
Query: 220 KHYAQTSEEWLKRMDNNLASIKPIMES 246
S + R K E
Sbjct: 225 V--NMISRMLINRFTM--RHKKATYEP 247
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 45.8 bits (108), Expect = 2e-06
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQN 114
R L G +L+VG G G++S YI +T + + + +
Sbjct: 78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 137
Query: 115 -VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
V +DI+ F + YD + + + N ++KI+ MK ++ +
Sbjct: 138 NVRTSRSDIADFISDQMYDA-----VIADIPDPWNHVQKIASMMKPGSVATFYLPN 188
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 44.7 bits (104), Expect = 3e-06
Identities = 15/160 (9%), Positives = 42/160 (26%), Gaps = 15/160 (9%)
Query: 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111
L+ Y + G VL CG +++ + + + + ++ F E +
Sbjct: 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHI 68
Query: 112 LQNVEIIVADISTFEM------------EASYDRIYSIEMFEHMK--NYQNLLKKISKWM 157
+ V E+ Y + + ++ + M
Sbjct: 69 TSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM 128
Query: 158 KED-TLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM 196
+ + L + + + W+ + +
Sbjct: 129 PQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEV 168
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.6 bits (104), Expect = 6e-06
Identities = 39/270 (14%), Positives = 77/270 (28%), Gaps = 31/270 (11%)
Query: 27 GKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86
G+ + Y D + + +L L R H VLDV CG G S+ + ++
Sbjct: 24 GEAARVWQLYIGDTRSRTAEYKAWLLGLL----RQHGCHRVLDVACGTGVDSIMLVEEGF 79
Query: 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-------ADISTFEMEASYDRIYSIEM 139
+ + + E R E + ++ D + I
Sbjct: 80 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 139
Query: 140 FEHMKN-------YQNLLKKISKWMKEDTLLFVHHFC------HKTFAYHFEDTNDDDWI 186
F H+ + ++ LK I+ ++ LL + H D
Sbjct: 140 FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLT 199
Query: 187 TKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNL------ASI 240
+ T+ + ++ V V +++ + + A
Sbjct: 200 KDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFG 259
Query: 241 KPIMESTYGKDQAVKWT-VYWRTFFIAVAE 269
S G + + Y +FI V +
Sbjct: 260 GRCQHSVLGDFKPYRPGQAYVPCYFIHVLK 289
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 8e-06
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 19/170 (11%)
Query: 27 GKYFKYSCCYFSDASK---TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQ 83
GKY + + + +++ E +K + + + +L +G G G + L I
Sbjct: 1 GKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILS 60
Query: 84 KYSNC------KITGICNSKTQKE----------FIEEQCRVLELQNVEIIVADISTFEM 127
K + S Q +E + + + +
Sbjct: 61 KVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120
Query: 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHF 177
+D I+ I+M ++K+ LK + + + + +
Sbjct: 121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL 170
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 43.8 bits (102), Expect = 8e-06
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
+ VLD+GCG G + A G+ SK + ++ + +
Sbjct: 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ---VTFCVASSH 139
Query: 122 ISTFEMEASYDRIYSIEMFEHMKNYQNLLKK 152
F + S D I I + ++K
Sbjct: 140 RLPFS-DTSMDAIIRIYAPCKAEELARVVKP 169
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.8 bits (103), Expect = 9e-06
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEE---QCRVLE 111
+ G VL+ G G G+L+L + + ++ E C
Sbjct: 89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148
Query: 112 LQNVEIIVADISTFEM-EASYDRIY--SIEMFEHMKNYQNLLKKISKWM 157
N ++V+D++ E+ + S DR + +E + LL M
Sbjct: 149 PDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLM 197
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 15/105 (14%), Positives = 28/105 (26%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
L VL +G G+ ++A I + S E + E R + A
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA 113
Query: 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
+ + L ++KE + +
Sbjct: 114 SKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVI 158
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 26/214 (12%), Positives = 70/214 (32%), Gaps = 8/214 (3%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
LD+ CG G+L+ + K+ N + + + + + L+ +
Sbjct: 32 VENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ 91
Query: 118 IVADISTFEMEASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 176
+++++ + S + + K +S +KE + + +
Sbjct: 92 DISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV 151
Query: 177 FEDT----NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 232
+ +DD+ + + + +F D + + A E+ K
Sbjct: 152 LGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKY 211
Query: 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIA 266
+ + +I ++ Y + K+T R ++
Sbjct: 212 LKHGQLNILDKVDC-YSNKKVEKFT--ERITYLV 242
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 15/119 (12%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 112
++ E ++ +LD+GCG+G + + +A + + + I + + L+
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDN 101
Query: 113 QNVEIIVADISTFEMEASYDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHFCH 170
++ ++ +D+ + Y++I + + ++++ + +K++ ++V
Sbjct: 102 YDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.4 bits (98), Expect = 2e-05
Identities = 21/146 (14%), Positives = 54/146 (36%)
Query: 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 106
AE +E + + VLD+ CG G +L +A++ + + + +
Sbjct: 25 AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAK 84
Query: 107 CRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166
R L+++ ++ V +I+ + +S M+ ++ + L K+++ +K +
Sbjct: 85 ERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144
Query: 167 HFCHKTFAYHFEDTNDDDWITKYFFT 192
C ++ +
Sbjct: 145 FPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 1/121 (0%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
D ++VG G G+ +A++ + GI K+ + ++ + + N++++ D
Sbjct: 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG 90
Query: 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
S I + + + +K + + L + HF+ N
Sbjct: 91 SDLTDYFEDGEIDRLYLNFSDPWPKKRHEKR-RLTYKTFLDTFKRILPENGEIHFKTDNR 149
Query: 183 D 183
Sbjct: 150 G 150
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.6 bits (97), Expect = 3e-05
Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 1/120 (0%)
Query: 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCR 108
A + + ++ G +VL +G G+ + +++ KI GI S +
Sbjct: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119
Query: 109 VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168
+ A E + L+ ++K +
Sbjct: 120 ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.3 bits (95), Expect = 6e-05
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 8/171 (4%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120
++ VLD+ CG G S + ++ G+ S+ E + E I+
Sbjct: 35 MKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 92
Query: 121 DISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFE 178
+ ++D + I+ H + K++ + +K ++ + +
Sbjct: 93 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 152
Query: 179 DT---NDDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQT 225
++ WI+K QD V + W G
Sbjct: 153 ESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAK 203
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
+L++G G + + + + IT + S+ + + + + I +
Sbjct: 21 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----DGITYIHSRFE 74
Query: 124 TFEMEASYDRIYSIEMFEHMKNYQNLLKKI-SKWMKEDTLLFVH 166
++ YD I + EH+ + LLK+I W+ E LF+
Sbjct: 75 DAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV 118
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 3/130 (2%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
D ++VG G G +A++ + GI K+ ++ + E QNV+++ D
Sbjct: 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA 88
Query: 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 182
T + + + + +K + L K + HF+ N
Sbjct: 89 DTLTDVFEPGEVKRVYLNFSDPWPKKRHEKR-RLTYSHFLKKYEEVMGKGGSIHFKTDNR 147
Query: 183 D--DWITKYF 190
++ K F
Sbjct: 148 GLFEYSLKSF 157
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 37.9 bits (87), Expect = 4e-04
Identities = 11/108 (10%), Positives = 32/108 (29%), Gaps = 3/108 (2%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
+G VLD+ G G L++ + + + N K Q + ++ +
Sbjct: 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA 73
Query: 123 STFEMEA-SYDRIYSIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHH 167
+ ++ + ++ + + E ++
Sbjct: 74 ERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCET 121
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 38.4 bits (88), Expect = 5e-04
Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 10/181 (5%)
Query: 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 117
R + G +VLD+GCG G L + + + + V
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 78
Query: 118 IVADIS--TFEMEASYDRIYSIEMFEHMKNYQNLLKK----ISKWMKEDTLLFVHHF-CH 170
D ++ +D I S F + + L I++ ++ +
Sbjct: 79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 138
Query: 171 KTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY---FQDDVSVVDHWLVNGKHYAQTSE 227
+ + +D+ +P ++ Y D V+ + V+ +
Sbjct: 139 VILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFK 198
Query: 228 E 228
Sbjct: 199 R 199
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-Q 113
+++G ++D G G G++ +A+ S+ K+ + + E L +
Sbjct: 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 155
Query: 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
V I V DIS E +F + + N + K + +K
Sbjct: 156 RVTIKVRDISEGFDEK-----DVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT 206
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 36.9 bits (84), Expect = 0.001
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 7/135 (5%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
+ VLDVG G G + IA + + + T + + + V
Sbjct: 75 DAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 134
Query: 117 IIVADISTFEMEAS-YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 175
+ D + + + + ++ +L+ + ++ L V
Sbjct: 135 VAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV---- 190
Query: 176 HFEDTNDDDWITKYF 190
E D + +
Sbjct: 191 --EGDGADRFFSTLL 203
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.002
Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 44/186 (23%)
Query: 31 KYSCCYFSDASKTLEDAE--KAMLELYCER--SRLEDGHTVLDVGCGWGSLSLYIAQKYS 86
Y Y+S +AE K LE + G T++D+G G + A S
Sbjct: 15 DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVL-AACDS 73
Query: 87 NCKITGICNSKTQKEFIEEQCR-----------------------------------VLE 111
IT + +E +E+ + V
Sbjct: 74 FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKR 133
Query: 112 LQNVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHH 167
+ ++ + + + D + ++ E Y+ L ++ +K L
Sbjct: 134 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193
Query: 168 FCHKTF 173
Sbjct: 194 TLRLPS 199
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 28/184 (15%)
Query: 5 IQTDKAKEQHYEL----PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAM----LELYC 56
+ ++ ++ P + GK + D ++ + +
Sbjct: 32 LNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMIL 91
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQ-- 113
+ G TVL+ G G G +SL++++ S ++ K + ++ +
Sbjct: 92 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151
Query: 114 ---------NVEIIVADISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
NV+ I DIS ++D + M N L +K
Sbjct: 152 LSHVEEWPDNVDFIHKDISGATEDIKSLTFDA-----VALDMLNPHVTLPVFYPHLKHGG 206
Query: 162 LLFV 165
+ V
Sbjct: 207 VCAV 210
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 100.0 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.97 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.9 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.9 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.87 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.86 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.85 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.85 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.83 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.82 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.81 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.8 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.8 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.79 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.79 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.78 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.78 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.77 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.76 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.76 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.75 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.75 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.75 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.73 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.72 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.72 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.72 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.71 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.71 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.71 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.7 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.7 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.69 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.68 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.67 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.67 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.66 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.65 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.63 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.63 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.62 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.58 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.57 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.56 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.55 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.55 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.53 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.52 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.52 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.52 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.52 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.48 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.47 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.46 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.45 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.43 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.39 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.39 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.38 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.37 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.37 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.33 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.3 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.29 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.28 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.28 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.24 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.17 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.15 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.13 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.09 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.09 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.05 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.05 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 99.04 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.04 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.97 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.97 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.97 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.91 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.89 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.88 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.87 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.86 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.85 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.84 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.79 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.78 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.75 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.58 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.58 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.56 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.48 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.37 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.09 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.07 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.75 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.65 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.52 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.51 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.45 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.43 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.4 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.35 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.32 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.31 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.24 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.21 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.18 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.12 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.05 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.97 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.91 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.78 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.72 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.66 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.64 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.57 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.56 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.5 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.29 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.26 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.21 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.09 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.97 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.96 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.89 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.87 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.83 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.76 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.71 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.65 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.53 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.17 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.7 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.67 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.47 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 94.07 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.96 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.85 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.84 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.33 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.08 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.73 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.6 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.56 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.54 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.9 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.43 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.85 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.79 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.62 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 90.03 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 89.79 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.72 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.55 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.21 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.55 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.37 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.11 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 88.09 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.03 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.97 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 87.93 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 87.75 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 87.53 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.46 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 87.41 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 87.39 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 87.34 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 86.97 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 86.87 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.72 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 86.51 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 86.49 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 86.41 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.08 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.82 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 85.23 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 84.78 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 84.74 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 83.01 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 82.77 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.89 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 81.32 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 81.09 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 80.57 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 80.18 |
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4.4e-49 Score=337.25 Aligned_cols=268 Identities=25% Similarity=0.430 Sum_probs=232.9
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
++.++|.+|||++++||+.|+|++++|||++|+.+..+++++|.++++.+++++++++|.+|||||||+|.++..+++++
T Consensus 4 ~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~ 83 (291)
T d1kpia_ 4 PPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY 83 (291)
T ss_dssp CCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred CcHhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccccc---------HHHHHHHHHh
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHMKN---------YQNLLKKISK 155 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~---------~~~~l~~~~~ 155 (291)
+++|+|+++|+++++.+++++...++ +++.+...|.... +++||.|+|..+++|+.+ ++.+++++.+
T Consensus 84 -g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~ 160 (291)
T d1kpia_ 84 -DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYN 160 (291)
T ss_dssp -CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHH
T ss_pred -CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHH
Confidence 78999999999999999999999888 4688888887543 378999999999999854 6899999999
Q ss_pred ccccCeeEEEEeeccCCcccccc--------cCCccchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHHH
Q 022810 156 WMKEDTLLFVHHFCHKTFAYHFE--------DTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQT 225 (291)
Q Consensus 156 ~L~pgG~l~i~~~~~~~~~~~~~--------~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~t 225 (291)
+|||||++++++++.+......+ .....+|+.+|+||++.+|+...+.... .++.+ ..|...+.||.+|
T Consensus 161 ~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v-~~~~~~~~hYa~T 239 (291)
T d1kpia_ 161 LTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKV-ERYHRIGANYVPT 239 (291)
T ss_dssp TSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEE-EEEEECGGGHHHH
T ss_pred hCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhccccccc-ceeeeccccHHHH
Confidence 99999999999988655432211 1123469999999999999988776654 34555 4466778999999
Q ss_pred HHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022810 226 SEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 226 ~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
+..|+++|.++..++..+ ++ +++++.|+.|+.+|+++|+.|.+ ++.|+++.|
T Consensus 240 L~~W~~~f~~~~~ei~~l----~g----~~~~r~W~~yl~~ce~~F~~~~~---~v~q~~l~K 291 (291)
T d1kpia_ 240 LNAWADALQAHKDEAIAL----KG----QETCDIYMHYLRGCSDLFRDKYT---DVCQFTLVK 291 (291)
T ss_dssp HHHHHHHHHHTHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHTTSS---EEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHh----cC----hHHHHHHHHHHHHHHHHHHCCCC---eEEEEEEEC
Confidence 999999999999888765 33 46899999999999999999885 699999987
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4.3e-49 Score=336.34 Aligned_cols=268 Identities=25% Similarity=0.445 Sum_probs=234.0
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
+..+.|++|||++++||+.+||++++|||++|..+..+++++|.++++.+++++++++|.+|||||||+|.++..+++.+
T Consensus 5 ~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~ 84 (285)
T d1kpga_ 5 PHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY 84 (285)
T ss_dssp CCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred ccHHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCee
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~ 162 (291)
+++|+|+++|+.+++.|++++.+.++ +++++..+|+.+++ ++||.|++..+++|+ ++...+++++.++|||||+
T Consensus 85 -g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~ 161 (285)
T d1kpga_ 85 -DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV 161 (285)
T ss_dssp -CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred -CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCc
Confidence 89999999999999999999988887 57999999998764 689999999999999 5678999999999999999
Q ss_pred EEEEeeccCCccc--------ccccCCccchhhhhccCCCCCCcHHHHHHh--hcCcEEEEeeecCCCcHHHHHHHHHHH
Q 022810 163 LFVHHFCHKTFAY--------HFEDTNDDDWITKYFFTGGTMPSANLLLYF--QDDVSVVDHWLVNGKHYAQTSEEWLKR 232 (291)
Q Consensus 163 l~i~~~~~~~~~~--------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~t~~~w~~~ 232 (291)
+++++++...... .........|+.+|+||+|.+|+....... ..++.+.+ +...+.||.+|++.|.++
T Consensus 162 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~-~~~~~~hYarTl~~W~~~ 240 (285)
T d1kpga_ 162 MLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTR-VQSLQPHYAKTLDLWSAA 240 (285)
T ss_dssp EEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEE-EEECHHHHHHHHHHHHHH
T ss_pred EEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhcc-cccchhhHHHHHHHHHHH
Confidence 9998887433211 111122357999999999999998777654 34566655 455579999999999999
Q ss_pred HHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022810 233 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
|.++..++..+ ++ +.++++|+.|+.+|+++|+.|+ +++.|++|+|
T Consensus 241 f~~~~~ei~~~----~~----~~~~rrw~~Yl~~c~~~F~~g~---~~v~q~~~~k 285 (285)
T d1kpga_ 241 LQANKGQAIAL----QS----EEVYERYMKYLTGCAEMFRIGY---IDVNQFTCQK 285 (285)
T ss_dssp HHHTHHHHHHH----SC----HHHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEC
T ss_pred HHHHHHHHHHh----cC----HHHHHHHHHHHHHHHHHHHCCC---CeEEEEEEEC
Confidence 99999888765 44 4688999999999999999988 6799999997
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4.7e-49 Score=336.23 Aligned_cols=263 Identities=24% Similarity=0.422 Sum_probs=225.8
Q ss_pred HhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEE
Q 022810 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 91 (291)
Q Consensus 12 ~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~ 91 (291)
++|||++++||+.|||++|+|||++|+.+..+++++|.++++.+++++++++|.+|||||||+|.++..++++. +++|+
T Consensus 1 qaHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~ 79 (280)
T d2fk8a1 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVI 79 (280)
T ss_dssp GGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEE
T ss_pred CCCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999876 78999
Q ss_pred EEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 92 GICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 92 ~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|+|+++++.|++++++.++ .++.+...|..+++ ++||.|++..+++|+ ++...+++++.++|||||+++++++
T Consensus 80 gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 80 GLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp EEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc--cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 999999999999999999988 46888888877653 789999999999999 5668999999999999999999876
Q ss_pred ccCCccc--------ccccCCccchhhhhccCCCCCCcHHHHHHhh--cCcEEEEeeecCCCcHHHHHHHHHHHHHhcHH
Q 022810 169 CHKTFAY--------HFEDTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238 (291)
Q Consensus 169 ~~~~~~~--------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~ 238 (291)
....... ........+|+.+|+||++.+|+...+.... .++.+.+ +...+.||.+||+.|+++|.++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~-~~~~~~hYa~TL~~W~~~f~~~~~ 236 (280)
T d2fk8a1 158 VSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPE-PLSLRPHYIKTLRIWGDTLQSNKD 236 (280)
T ss_dssp ECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCC-CEECHHHHHHHHHHHHHHHHHTHH
T ss_pred eccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhhccccce-eeecccCHHHHHHHHHHHHHHHHH
Confidence 5432211 0111223579999999999999988766543 3455443 344578999999999999999998
Q ss_pred hHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022810 239 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
++.+. ++ +.++++|+.|+.+|+++|++|. +++.|++++||
T Consensus 237 ~i~~~----~~----~~~~r~w~~yl~~c~~~F~~~~---~~~~q~~~~kp 276 (280)
T d2fk8a1 237 KAIEV----TS----EEVYNRYMKYLRGCEHYFTDEM---LDCSLVTYLKP 276 (280)
T ss_dssp HHHHH----SC----HHHHHHHHHHHHHHHHHHHTTS---CEEEEEEEECT
T ss_pred HHHHh----cC----HHHHHHHHHHHHHHHHHHhCCC---ccEEEEEEEcC
Confidence 88664 33 4688999999999999999987 67999999999
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.97 E-value=2e-28 Score=209.11 Aligned_cols=262 Identities=15% Similarity=0.150 Sum_probs=179.3
Q ss_pred hHHHhhcCC--ChHHHHHhh-CCCCCccccccCCCC--CCHHHHHHHHHHHHH----HHcCCCCCCEEEEEcCCcchHHH
Q 022810 9 KAKEQHYEL--PTSFFKLVL-GKYFKYSCCYFSDAS--KTLEDAEKAMLELYC----ERSRLEDGHTVLDVGCGWGSLSL 79 (291)
Q Consensus 9 ~~~~~~yd~--~~~~y~~~~-~~~~~y~~~~~~~~~--~~l~~~~~~~~~~~~----~~~~~~~~~~vLDiGcG~G~~~~ 79 (291)
+...+|||. ...||+.+| |+.+|+ |+|..+. ..+.+++.+..+.++ ...+++++.+|||||||+|.++.
T Consensus 6 ~~~~~~y~~~~~~~fy~~~w~g~~~h~--G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~ 83 (282)
T d2o57a1 6 DNAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAAR 83 (282)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHH
T ss_pred HHHHHhcCCchhHHHHHHHcCCCCcee--eecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHh
Confidence 457899997 679998877 566776 8887543 556666655554444 44578899999999999999999
Q ss_pred HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhcc
Q 022810 80 YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 80 ~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 157 (291)
.+++++ +++|+|+|+|+.+++.|+++....++ ++++++++|+.+++.+ ++||+|++..+++|++++..+++++.++|
T Consensus 84 ~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~L 162 (282)
T d2o57a1 84 FLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVL 162 (282)
T ss_dssp HHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE
T ss_pred hhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhc
Confidence 999876 78999999999999999999999988 4799999999999877 89999999999999999999999999999
Q ss_pred ccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-h-hcCcEEEEeeecCCCcHHHHHHHHHHHHHh
Q 022810 158 KEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDN 235 (291)
Q Consensus 158 ~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~ 235 (291)
||||++++.++......... ....|......+. +.+...... + ..++..+... ....++..++..|...+..
T Consensus 163 kpgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~s~~~~~~~l~~~Gf~~i~~~-d~~~~~~~~~~~~~~~~~~ 236 (282)
T d2o57a1 163 KPRGVMAITDPMKEDGIDKS---SIQPILDRIKLHD--MGSLGLYRSLAKECGLVTLRTF-SRPDSLVHHYSKVKAELIK 236 (282)
T ss_dssp EEEEEEEEEEEEECTTCCGG---GGHHHHHHHTCSS--CCCHHHHHHHHHHTTEEEEEEE-ECHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEeecCCCCchh---HHHHHHHHhccCC--CCCHHHHHHHHHHcCCceEEEE-ECcHhHHHHHHHHHHHHHH
Confidence 99999999877654432211 1223333332222 333332222 2 3455444332 2223445566666666665
Q ss_pred cHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 022810 236 NLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 290 (291)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 290 (291)
....+.. ...++..+.+...+. .+.+....|. ++-+-+++|||-
T Consensus 237 ~~~~~~~----~~~~e~~~~~~~~~~----~~~~~~~~g~---~~~g~~varK~~ 280 (282)
T d2o57a1 237 RSSEIAS----FCSPEFQANMKRGLE----HWIEGGRAGK---LTWGGMLFRKSD 280 (282)
T ss_dssp THHHHTT----TSCHHHHHHHHHHHH----HHHHHHHTTS---EEEEEEEEEESS
T ss_pred HHHHHHh----hcCHHHHHHHHHHHH----HHHHHHhCCe---eEEEEEEEEcCC
Confidence 5544432 223222222223332 3333334443 566778889983
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=9e-24 Score=175.05 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=110.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
+..+.+++.++++++.+|||||||+|.++..++++ +.+|+|||+|+.|++.|++++...+++++.++++|+++++++
T Consensus 3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccc
Confidence 34567888899999999999999999999999987 679999999999999999999999888899999999998877
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++||+|+|..+++|++++..+++++.++|||||++++......
T Consensus 81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 8999999999999999999999999999999999999776544
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.90 E-value=1.7e-23 Score=172.73 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=108.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
+..+++.++++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.++++++++|+++++.+ ++
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 456778889999999999999999999999987 679999999999999999999998888999999999998866 89
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
||+|+|..+++|++++..+++++.++|||||++++.++..+
T Consensus 82 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 122 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 122 (231)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred cccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99999999999999999999999999999999999876553
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.7e-23 Score=170.91 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=113.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~ 127 (291)
..+++.+.+.+.+.|+.+|||||||+|..+..+++.+ +++|+|||+|+.+++.|++++...++ ++++++++|+.++..
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~ 97 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 97 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc
Confidence 5667788899999999999999999999999999876 68999999999999999999999988 469999999999755
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 174 (291)
+++||+|+|..+++|++++..++++++++|||||++++..+.....+
T Consensus 98 ~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~ 144 (245)
T d1nkva_ 98 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLP 144 (245)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCC
T ss_pred cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCC
Confidence 58999999999999999999999999999999999999887655443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.87 E-value=7.7e-22 Score=164.72 Aligned_cols=143 Identities=15% Similarity=0.344 Sum_probs=116.1
Q ss_pred hhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022810 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 13 ~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~ 92 (291)
.+||..+++|+..+...... . ......+..++......++.+|||||||+|..+..++++ +.+|+|
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~g 68 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIER-----------V-KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVG 68 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHT-----------H-HHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEE
T ss_pred chhHhhHHHHHHHHHhhhhh-----------H-HHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc--ceEEEE
Confidence 47888888888754321111 1 122345666777777788889999999999999999987 789999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc-cccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 93 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~-~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|+.|++.|++++...+. +++++++|+++++.+++||+|+|. .+++++ ++...+|+++.++|||||++++..++
T Consensus 69 vD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 69 LDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred Eeeccccccccccccccccc-cchheehhhhhcccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 99999999999999988877 799999999999877899999996 466666 56778999999999999999997765
Q ss_pred c
Q 022810 170 H 170 (291)
Q Consensus 170 ~ 170 (291)
.
T Consensus 148 ~ 148 (251)
T d1wzna1 148 W 148 (251)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=3.4e-21 Score=157.97 Aligned_cols=121 Identities=21% Similarity=0.332 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
+.....+..++.+. ++++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. ++.++++|+.++
T Consensus 21 ~~~~~~~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l 96 (226)
T d1ve3a1 21 RSRIETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKL 96 (226)
T ss_dssp HHHHHHHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSC
T ss_pred HHHHHHHHHHHHHh-cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc-cccccccccccc
Confidence 33444555566553 357789999999999999999986 78999999999999999999888775 688999999998
Q ss_pred ccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 126 EME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+.+ ++||+|+|..+++|++ +...+++++.++|||||++++..++.
T Consensus 97 ~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 97 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 877 8999999999999985 67789999999999999999987754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.85 E-value=2.3e-21 Score=161.56 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=109.0
Q ss_pred hcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEE
Q 022810 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI 93 (291)
Q Consensus 14 ~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~v 93 (291)
+|+..+++|+..+...+.|. .....+..++.... .++.+|||||||+|.++..++++ +.+|+|+
T Consensus 2 ~y~~~A~~YD~l~~~~~~y~-------------~~~~~~~~~~~~~~-~~~~~vLDiGCG~G~~~~~l~~~--g~~v~Gv 65 (246)
T d1y8ca_ 2 CYNKFAHIYDKLIRADVDYK-------------KWSDFIIEKCVENN-LVFDDYLDLACGTGNLTENLCPK--FKNTWAV 65 (246)
T ss_dssp CHHHHHHHHHHHTTCSCCHH-------------HHHHHHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGG--SSEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCHH-------------HHHHHHHHHHHHhC-CCCCeEEEEeCcCCHHHHHHHHh--CCccEee
Confidence 35545677776665544441 11233444444433 44679999999999999999988 7799999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc-cccccc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 94 CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 94 D~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~-~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+|+.|++.|++++...+. +++++++|+.+++.+++||+|+|. .+++++ ++...++++++++|+|||.+++...+
T Consensus 66 D~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 66 DLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccchhhhhhccccccccCc-cceeeccchhhhcccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 9999999999999988877 799999999998777899999986 567666 46677999999999999999987654
Q ss_pred c
Q 022810 170 H 170 (291)
Q Consensus 170 ~ 170 (291)
+
T Consensus 145 ~ 145 (246)
T d1y8ca_ 145 Y 145 (246)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=8e-23 Score=167.96 Aligned_cols=110 Identities=12% Similarity=0.152 Sum_probs=96.3
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
...++.+|||||||+|..+..+++.. ..+|+|||+|+.+++.|++++...+..+++++++|+++++.+ ++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 45677899999999999999987665 568999999999999999998887766789999999998766 8999999999
Q ss_pred cccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022810 139 MFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+++|+++. .+++++++++|+|||.+++.+...
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~ 169 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 169 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence 99999654 579999999999999999976543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=3.8e-20 Score=149.07 Aligned_cols=108 Identities=20% Similarity=0.319 Sum_probs=97.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..++.+|||||||+|..+..++++ +.+|+|+|+|+.+++.+++++...+++++.+...|+....++++||+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 334559999999999999999988 789999999999999999999999988899999999998777899999999999
Q ss_pred cccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 141 EHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|++ +...+++++.++|+|||++++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9994 45689999999999999999876643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.82 E-value=4.3e-20 Score=156.70 Aligned_cols=118 Identities=21% Similarity=0.354 Sum_probs=103.7
Q ss_pred HHHHHHHc-CCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 52 LELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
+..+++.+ .+.++.+|||||||+|..+..+++..| +.+|+|+|+|+.+++.|+++....+. +++++++|+.+++.++
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~~ 93 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELND 93 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSS
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccccC
Confidence 44454433 456788999999999999999998775 57999999999999999999988776 7999999999987778
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|++..+++|++++..+++++.++|||||.+++.++..
T Consensus 94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~ 134 (281)
T d2gh1a1 94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 134 (281)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence 89999999999999999999999999999999999988653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=7.3e-20 Score=151.81 Aligned_cols=113 Identities=18% Similarity=0.334 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...+..++... .+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. . ..++.+|+++++.+
T Consensus 29 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~----~--~~~~~~~~~~l~~~ 99 (246)
T d2avna1 29 HRLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG----V--KNVVEAKAEDLPFP 99 (246)
T ss_dssp HHHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT----C--SCEEECCTTSCCSC
T ss_pred HHHHHHHHHHh-cCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc----c--cccccccccccccc
Confidence 33444444443 346779999999999999999986 789999999999999988752 2 23678999998876
Q ss_pred -CCccEEEEc-ccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 -ASYDRIYSI-EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 -~~~D~v~~~-~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++||+|+|. .+++|++|+..+++++.++|||||++++..++.
T Consensus 100 ~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 100 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred cccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 899999985 589999999999999999999999999987653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.80 E-value=2.5e-19 Score=149.60 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022810 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~ 124 (291)
..........+++.+...++.+|||+|||+|.++..++..+ ..+|++||+|+.+++.|+++.... ++++++++|+.+
T Consensus 75 ~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~ 151 (254)
T d1xtpa_ 75 HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMET 151 (254)
T ss_dssp HHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGG
T ss_pred chhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccccc--ccceeEEccccc
Confidence 34444556677788877888999999999999999887664 468999999999999998876433 368999999999
Q ss_pred CccC-CCccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeec
Q 022810 125 FEME-ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~~-~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++++ ++||+|++..+++|+++. ..+++++++.|+|||++++.++.
T Consensus 152 ~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence 8776 889999999999999664 58899999999999999997654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.80 E-value=5.3e-19 Score=141.65 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=98.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC------------CCeEEEEc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------QNVEIIVA 120 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~i~~~~~ 120 (291)
...+..+.++++.+|||+|||+|..+..|+++ |.+|+|+|+|+.+++.|+++++..+. .++.+.++
T Consensus 10 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 10 QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 34456678889999999999999999999998 89999999999999999998865321 24678899
Q ss_pred cccCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 121 DISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 121 d~~~~~~~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+.++... ..||+|++..+++++. +....++++.+.|||||.+++.....
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 99887644 7899999999999984 46789999999999999988876654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.79 E-value=1.9e-19 Score=147.80 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=92.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.. +++.++.+|+++...+++||+|++..+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~~~fD~I~~~~vle 92 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVLE 92 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc----cccccccccccccccccccccccccceeE
Confidence 35678999999999999999887 6789999999999999986532 37999999999987778999999999999
Q ss_pred ccccHHHHHHHHH-hccccCeeEEEEeeccC
Q 022810 142 HMKNYQNLLKKIS-KWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 142 ~~~~~~~~l~~~~-~~L~pgG~l~i~~~~~~ 171 (291)
|++++..++.++. ++|+|||.+++..++..
T Consensus 93 h~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 93 HIDDPVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp GCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred ecCCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 9999999999998 78999999999988654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.79 E-value=5.7e-19 Score=144.91 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=95.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
.+++.+|||||||+|..+..+++.. |+.+|+|+|+|+.|++.|+++++..+. .++.+..+|+.+.+. ..+|+|++.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~ 115 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILN 115 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEe
Confidence 4678899999999999999999763 688999999999999999999887665 468888888877643 678999999
Q ss_pred cccccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 138 EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 138 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.+++++ ++...++++++++|||||.+++.++....
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 152 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccc
Confidence 999998 57889999999999999999998765433
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.78 E-value=7e-19 Score=146.86 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=93.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~D~v~~~ 137 (291)
.+++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++....+. .++.+.++|+..... .++||+|+|.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 4678999999999999999998873 46899999999999999999887766 379999999976554 3789999999
Q ss_pred cccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 138 EMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 138 ~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.+++|+ .+...+++++.++|||||++++..++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 999997 345679999999999999999987753
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.78 E-value=9.8e-19 Score=139.26 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=99.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~- 128 (291)
....++.++.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++++..++ ++++++++|+.+...+
T Consensus 21 ir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~ 98 (186)
T d1l3ia_ 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (186)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHHhcCCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence 3455667788999999999999999999999876 67999999999999999999999998 5899999999887655
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..||.|++....+ +...+++.+.+.|||||++++.....
T Consensus 99 ~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~~ 137 (186)
T d1l3ia_ 99 PDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILL 137 (186)
T ss_dssp CCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred CCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeecc
Confidence 8999999987664 45678999999999999998876543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=2.1e-18 Score=138.24 Aligned_cols=113 Identities=15% Similarity=0.329 Sum_probs=97.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCccCCCc
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEMEASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~~~~~ 131 (291)
.+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++.++++ ++++..+|+.+...+++|
T Consensus 43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f 120 (194)
T d1dusa_ 43 ILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHHhCCcCCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence 4566778888999999999999999999987 569999999999999999999988874 589999999874444899
Q ss_pred cEEEEccccccccc-HHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKN-YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~-~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|+++.++++..+ ...+++.+.++|+|||.+++...
T Consensus 121 D~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 99999999887755 47799999999999999887543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.76 E-value=4.9e-18 Score=141.74 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=101.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
.+.+++.++..+..+|||||||+|..+..+++++|+.+++++|+ +.+++.+++++...++ ++++++.+|+.+.. +.+
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-~~~ 146 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-PRK 146 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SSC
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-ccc
Confidence 35566777888889999999999999999999999999999998 6789999999998887 58999999987643 367
Q ss_pred ccEEEEcccccccccH--HHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|++..++|++++. ..+|++++++|||||+++|.+..
T Consensus 147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999999999999654 57899999999999999987653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=3.2e-18 Score=138.52 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
++.+|||||||+|.++..++ +++|+|+|+.+++.++++ ++.++++|+++++.+ ++||+|++..+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 102 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTIC 102 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------ccccccccccccccccccccccccccccc
Confidence 45689999999999887663 468999999999988763 588999999998776 8999999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
|++++..+++++.++|+|||.+++.++...
T Consensus 103 h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 103 FVDDPERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp GSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cccccccchhhhhhcCCCCceEEEEecCCc
Confidence 999999999999999999999999887654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.9e-17 Score=136.05 Aligned_cols=118 Identities=9% Similarity=0.072 Sum_probs=98.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----------------CCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----------------LQN 114 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-----------------~~~ 114 (291)
.+.+.+.+...++.+|||+|||+|..+..|+++ |.+|+|||+|+.+++.++++....+ ..+
T Consensus 34 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (229)
T d2bzga1 34 KKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN 111 (229)
T ss_dssp HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence 344445566778999999999999999999987 8999999999999999888754321 136
Q ss_pred eEEEEccccCCccC--CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 115 VEIIVADISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 115 i~~~~~d~~~~~~~--~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++++++|+.++... +.||+|+...+++++ ++...+++++.++|||||.+++.++...
T Consensus 112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred EEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence 89999999887544 789999999999999 5678899999999999999888776543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=5.1e-18 Score=140.88 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.+++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|++.+++ +++++++|+.+....++||+|+++...
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~~~~~~fD~V~ani~~ 194 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccccccccccchhhhcccc
Confidence 357899999999999999988875 78999999999999999999999988 678899998765434899999997554
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+ ....+++.+.++|||||+++++.+
T Consensus 195 ~---~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 195 E---LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp H---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c---cHHHHHHHHHHhcCCCcEEEEEec
Confidence 3 356788999999999999998754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=8.1e-18 Score=136.56 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.++..+++.++++++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+++++.++++|..+....
T Consensus 62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~ 141 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (213)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc
Confidence 456677888999999999999999999999999875 5679999999999999999999999998999999998876554
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++||+|++..+++++++ .+.+.|||||++++..
T Consensus 142 ~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 142 FSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred ccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence 78999999999988863 4567799999998754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.5e-17 Score=139.77 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
+...+...+ ..++.+|||||||+|.++..+++.+|+.+++|+|+|+.+++.|+++ .+++.++++|+.+++.+ +
T Consensus 73 ~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~~~ 146 (268)
T d1p91a_ 73 IVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFSDT 146 (268)
T ss_dssp HHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBCTT
T ss_pred HHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----cccccceeeehhhccCCCC
Confidence 333333433 3467799999999999999999998899999999999999888764 24789999999999877 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
+||+|++..++++ ++++.++|||||.+++.++++...
T Consensus 147 sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 147 SMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp CEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred CEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCcch
Confidence 9999999888765 467899999999999999876543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.72 E-value=1.3e-17 Score=137.88 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=94.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~ 129 (291)
...++.+++++||.+|||+|||+|.++..+++. .|..+|+++|.++++++.|+++++..+. .++++..+|+.+...++
T Consensus 74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 355678889999999999999999999999986 4678999999999999999999988644 68999999999875558
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.||.|++ +++++..+++.+.++|||||++++..|+.
T Consensus 154 ~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 154 MYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp CEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred eeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence 8999987 45677889999999999999999876643
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=1.6e-17 Score=138.16 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhC---CCCeEEEEccccCCc
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE---LQNVEIIVADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~---~~~i~~~~~d~~~~~ 126 (291)
.+..++..+++.||.+|||+|||+|.++..|++. .|..+|+++|+++++++.|+++++... .+++.++++|+.+..
T Consensus 84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 3567788899999999999999999999999987 578899999999999999999988642 368999999998876
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.+ ++||.|++ +++++..++.++.++|||||.+++..|+.
T Consensus 164 ~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 65 89999986 57888999999999999999999877765
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=3.4e-17 Score=131.59 Aligned_cols=105 Identities=22% Similarity=0.227 Sum_probs=93.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~~~~ 139 (291)
++..|||||||+|..+..+|+.+|+..++|+|+++.++..|.+++.+.+++|+.++++|+..+. .+ +++|.|++..+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 3458999999999999999999999999999999999999999999999999999999998754 33 88999999888
Q ss_pred ccccccH--------HHHHHHHHhccccCeeEEEEe
Q 022810 140 FEHMKNY--------QNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+.+.. ..+++.++++|||||.|++.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7766432 589999999999999998865
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=5.9e-17 Score=135.47 Aligned_cols=118 Identities=17% Similarity=0.316 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
+..++..+.... ..+.+|||+|||+|..++.++...|..+|+++|+|+.+++.|++|+...+++++.++++|+.+....
T Consensus 95 E~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~ 173 (274)
T d2b3ta1 95 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG 173 (274)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT
T ss_pred hhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC
Confidence 344555555544 4567899999999999999999999999999999999999999999999997899999999875444
Q ss_pred CCccEEEEcccccccc-------------------------cHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMK-------------------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+||+|+||++.-... ....++..+.+.|+|||.+++..
T Consensus 174 ~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 174 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7999999998753211 14568888999999999999864
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.71 E-value=7.3e-17 Score=134.61 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=99.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 131 (291)
..+++.++..+..+|||||||+|..+..+++++|+.+++++|+ +.+++.+++++...++ +++.++.+|..+. .+.++
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~p~~~ 148 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LPVTA 148 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCCE
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-ccccc
Confidence 4556667777888999999999999999999999999999998 7889999999988887 5799999998763 34679
Q ss_pred cEEEEcccccccccH--HHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|++..++|++++. ..+|+++++.|||||+++|.+.
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 999999999999654 5789999999999999998765
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.71 E-value=5.3e-17 Score=131.13 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=90.5
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C---CccE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A---SYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~---~~D~ 133 (291)
.+.++|+.+|||+|||+|..+..+++..|..+|+|+|+|+.+++.++++++..+ ++.++.+|+...... . .+|+
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEE
Confidence 477899999999999999999999999887899999999999999999987764 899999999886543 3 3444
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|++ .+.+..+...+++++.++|||||.+++....
T Consensus 129 v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 129 IYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EEe--cccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 433 4556677889999999999999999887643
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.70 E-value=2.8e-17 Score=134.64 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=95.3
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccE
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDR 133 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~ 133 (291)
++.+.++||.+|||||||+|..+..+++..|+..|+|+|+|+.+++.+++++... +++..+.+|....... ..+|+
T Consensus 67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCE
T ss_pred HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCccccccccee
Confidence 3456789999999999999999999999988899999999999999998876554 3788888888775433 66788
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++...+++..+...++.++++.|||||.+++...
T Consensus 145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence 88888888888899999999999999999988654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.5e-18 Score=146.99 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC-
Q 022810 41 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL- 112 (291)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~~- 112 (291)
..++.+.+...+..+++.+.++++.+|||||||+|..+..+++..+..+++|||+++.+++.|+++.++. |.
T Consensus 129 ~~~~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~ 208 (328)
T d1nw3a_ 129 PEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 208 (328)
T ss_dssp TTCCCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCchhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3455555667788899999999999999999999999999999886678999999999999998876542 23
Q ss_pred -CCeEEEEccccCCccC-C--CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 113 -QNVEIIVADISTFEME-A--SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 113 -~~i~~~~~d~~~~~~~-~--~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+++++++|+.+.+.. . .+|+|+++. +.+.++....+.++.+.|||||++++.
T Consensus 209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 209 HAEYTLERGDFLSEEWRERIANTSVIFVNN-FAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCSEEEECC-TTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred CCceEEEECcccccccccccCcceEEEEcc-eecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 4799999999887644 2 347777654 557788899999999999999998764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=1e-16 Score=133.96 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~ 128 (291)
....++.++++.||.+|||+|||+|.++..+++.. |+.+|+++|.++++++.|+++++..++ +++.+...|+......
T Consensus 91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 35567888999999999999999999999999875 678999999999999999999999987 5788888887654333
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..+|.|+. +++++..+++++.++|||||++++..|+.
T Consensus 171 ~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 171 KDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp CSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred cceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 67888765 67888999999999999999999877653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=9.1e-17 Score=136.70 Aligned_cols=113 Identities=21% Similarity=0.279 Sum_probs=88.4
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC----CeEEEEccccCC----cc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ----NVEIIVADISTF----EM 127 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~----~i~~~~~d~~~~----~~ 127 (291)
.+.+...++.+|||+|||+|.++..|++. +.+|+|+|+|+.|++.|+++....+.. ...+..+++... +.
T Consensus 49 ~~~l~~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T d1xvaa_ 49 LGLLRQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA 126 (292)
T ss_dssp HHHHHHTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC
T ss_pred HHHhhhcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC
Confidence 33344456789999999999999999987 789999999999999999988776542 244555555432 23
Q ss_pred CCCccEEEEcc-cccccc-------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 128 EASYDRIYSIE-MFEHMK-------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~~~~D~v~~~~-~l~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++||.|+|.. +++|++ +...+|+++.++|||||+|++...+.
T Consensus 127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 37899999864 788874 36679999999999999999977643
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.67 E-value=4.8e-16 Score=124.73 Aligned_cols=105 Identities=19% Similarity=0.292 Sum_probs=92.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~~~~ 139 (291)
.+..|||||||+|.++..+|+.+|...++|+|+++.++..|.+++...+++|+.++.+|+..+. .+ .++|.|++..+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 3458999999999999999999999999999999999999999999999999999999998764 23 78999998887
Q ss_pred cccccc--------HHHHHHHHHhccccCeeEEEEe
Q 022810 140 FEHMKN--------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
-.+.+. ...+++.+.++|||||.+++.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 655532 2689999999999999998865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.9e-17 Score=134.13 Aligned_cols=114 Identities=12% Similarity=0.066 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~ 127 (291)
..+..+...+. .+|.+|||||||+|..+..+++.. ..+|++||+|+.+++.|++++...+. ++.++..|+.... .
T Consensus 41 ~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 117 (229)
T d1zx0a1 41 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTL 117 (229)
T ss_dssp HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGS
T ss_pred HHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhccc-cccccccccccccccc
Confidence 34444444443 578899999999999999999764 46899999999999999998876654 6788888876542 2
Q ss_pred C-CCccEEEE-----cccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 E-ASYDRIYS-----IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~v~~-----~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+ ++||.|+. ...++|+.+...++++++++|||||+|++.
T Consensus 118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 3 78888874 556777888999999999999999998763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.8e-16 Score=125.48 Aligned_cols=112 Identities=24% Similarity=0.202 Sum_probs=93.5
Q ss_pred HHHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-----CCeEEEEccc
Q 022810 51 MLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADI 122 (291)
Q Consensus 51 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~i~~~~~d~ 122 (291)
+...+++.+ .++++.+|||||||+|..+..+++.. |..+|+++|.++++++.|++++++.++ .++.++.+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 445666666 67899999999999999999998763 567999999999999999999987654 4789999998
Q ss_pred cCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 123 STFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 123 ~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.....+ ++||+|++..+++++++ .+.+.|||||++++...
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG 182 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred ccccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence 876555 89999999999988753 46788999999988543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.8e-16 Score=130.39 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHH----CCC--CEEEEEcCCHHHHHHHHHHHHHhC-CCCe--
Q 022810 46 DAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQK----YSN--CKITGICNSKTQKEFIEEQCRVLE-LQNV-- 115 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~----~p~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~i-- 115 (291)
+.....+..++..+. .++..+|||||||+|.++..+++. +++ .+++|||+|+.+++.+++++.... +.++
T Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~ 101 (280)
T d1jqea_ 22 EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKF 101 (280)
T ss_dssp HHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccc
Confidence 333344444444443 345558999999999998877654 444 368999999999999999876533 2344
Q ss_pred EEEEccccCC------cc-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 116 EIIVADISTF------EM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 116 ~~~~~d~~~~------~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.+...++++. .. .++||+|++..+++|++++..+++++.++|+|||.+++..+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 102 AWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp EEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred cchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 4445544322 12 27899999999999999999999999999999999999877543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.5e-17 Score=135.28 Aligned_cols=150 Identities=16% Similarity=0.094 Sum_probs=98.0
Q ss_pred ChHHHHHhhCCCCCccccccCCCCCCHHH--HHHHHHHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEE
Q 022810 18 PTSFFKLVLGKYFKYSCCYFSDASKTLED--AEKAMLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI 93 (291)
Q Consensus 18 ~~~~y~~~~~~~~~y~~~~~~~~~~~l~~--~~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~v 93 (291)
+.++|+.++++. .|...+|......... ...-....+.+.+ ...++.+|||||||+|.++..++... ..+|+|+
T Consensus 3 ~~~~y~~~f~~~-~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~gi 80 (257)
T d2a14a1 3 GGDEYQKHFLPR-DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS-FQDITLS 80 (257)
T ss_dssp CHHHHHHHCCHH-HHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEE
T ss_pred CcchHHhhcChH-HHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccc-cCcEEEe
Confidence 345666665543 3333444433322222 2222233333333 23467899999999999988777663 4579999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-----------------------------e-EEEEccccC----CccC-CCccEEEEcc
Q 022810 94 CNSKTQKEFIEEQCRVLELQN-----------------------------V-EIIVADIST----FEME-ASYDRIYSIE 138 (291)
Q Consensus 94 D~s~~~~~~a~~~~~~~~~~~-----------------------------i-~~~~~d~~~----~~~~-~~~D~v~~~~ 138 (291)
|+|+.+++.|+++++..+... + .....+... .+.+ ++||+|++..
T Consensus 81 D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~ 160 (257)
T d2a14a1 81 DFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL 160 (257)
T ss_dssp ESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES
T ss_pred cCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehh
Confidence 999999999999887554310 0 111111111 1222 7899999999
Q ss_pred cccccc----cHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++|+. ++..+++++.++|||||++++.++.
T Consensus 161 ~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 161 AMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 999983 6778999999999999999997764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.63 E-value=1.5e-15 Score=123.29 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
.+...+++.+.++++.+|||||||+|.++..+++. ..+|+++|.++..++.|+++... ..++.++.+|......+
T Consensus 57 ~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~~ 132 (224)
T d1vbfa_ 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEEE 132 (224)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGGG
T ss_pred hhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc--ccccccccCchhhcchhh
Confidence 34456778889999999999999999999999987 68999999999999999987654 35899999998764444
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++||.|++..++.++++ .+.+.|+|||+|++..
T Consensus 133 ~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 133 KPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp CCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred hhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence 78999999998887753 4567899999998743
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.3e-16 Score=131.54 Aligned_cols=114 Identities=20% Similarity=0.284 Sum_probs=94.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhC-----------CCCeEEEE
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-----------LQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~-----------~~~i~~~~ 119 (291)
+..++..+++.||.+|||+|||+|.++..|++. .|..+|+++|+++++++.|+++++..+ .+++.+.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 556778889999999999999999999999987 467899999999999999999988642 25799999
Q ss_pred ccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 120 ADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 120 ~d~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|+.+.... ..||.|++ .++++..++.++.++|||||++++..|+.
T Consensus 167 ~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp SCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 999875432 67999986 45677789999999999999999877654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.62 E-value=1.6e-15 Score=122.36 Aligned_cols=111 Identities=22% Similarity=0.223 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
.+...+++.+.++++.+|||||||+|..+..+++.. +.+|+++|.++..++.|++++.+.+.+|+.++++|...-...
T Consensus 65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~ 143 (215)
T d1jg1a_ 65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 143 (215)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence 355677888899999999999999999999999875 678999999999999999999999999999999999875444
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+||.|++......+++. +.+.|+|||++++..
T Consensus 144 ~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 144 APYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp CCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred CcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence 899999999998877632 566799999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=6.3e-15 Score=127.13 Aligned_cols=103 Identities=23% Similarity=0.336 Sum_probs=87.3
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~ 137 (291)
...++.+|||||||+|.++..+++.. ..+|+++|.|+ ++..|+++.+.++. +++.++.+|+.+++.+ ++||+|++.
T Consensus 35 ~~~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se 112 (328)
T d1g6q1_ 35 DLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE 112 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred ccCCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEE
Confidence 34478999999999999999888763 45899999986 67888888888887 5799999999998876 899999997
Q ss_pred cccccc---ccHHHHHHHHHhccccCeeEE
Q 022810 138 EMFEHM---KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 138 ~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.+.+.+ .....++..+.++|||||+++
T Consensus 113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 766555 567889999999999999975
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=4.7e-15 Score=120.71 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=89.2
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---C-CCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~ 131 (291)
+.+.++||.+|||+|||+|..+.++++.. |..+|+|+|+++.+++.++++++..+ ++..+..|...... . ..+
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccce
Confidence 45678899999999999999999999875 67899999999999999998876543 67888888865432 2 677
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+|++. +.+..+...+++++.+.|||||.+++....
T Consensus 145 D~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 145 DVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 887764 445567788999999999999999887543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=9.4e-15 Score=125.38 Aligned_cols=103 Identities=28% Similarity=0.380 Sum_probs=86.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
..++.+|||||||+|.++..+++.. ..+|+++|.|+. ...++++.+.+++ +++.++++|+.+++.+ ++||+|++..
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~ 108 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 108 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence 3478999999999999999988863 358999999975 5667777777777 5799999999998877 8999999977
Q ss_pred ccccc---ccHHHHHHHHHhccccCeeEEE
Q 022810 139 MFEHM---KNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 139 ~l~~~---~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+.+.+ ...+.++..+.++|||||.++-
T Consensus 109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 109 MGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 66555 4578899999999999999764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=2e-14 Score=126.03 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-------C--CCeEE-E
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------L--QNVEI-I 118 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-------~--~~i~~-~ 118 (291)
...+..+++.++++++.+|||||||+|..+..++..++..+|+|||+++.+++.|+++++..+ . ..+.+ .
T Consensus 202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 456778889999999999999999999999999998866799999999999999999887532 1 12333 3
Q ss_pred EccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 119 VADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 119 ~~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.++....+.. ..+|+|+++. +.+.++....+.++.+.|||||+++..
T Consensus 282 ~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 282 KKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred eechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 3444332211 4678888764 457788999999999999999998764
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.5e-14 Score=122.50 Aligned_cols=109 Identities=22% Similarity=0.317 Sum_probs=86.5
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCcc
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYD 132 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D 132 (291)
+.+.....++.+|||||||+|.++..+++.. ..+|+++|.|+.+.. +++...+++. +++.++.+|+.++..+ .+||
T Consensus 27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~G-a~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D 104 (311)
T d2fyta1 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD 104 (311)
T ss_dssp HHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred HHhccccCCcCEEEEECCCCCHHHHHHHHcC-CCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccce
Confidence 3333455678999999999999999999873 368999999998765 5555556555 6899999999998776 8999
Q ss_pred EEEEccccccc---ccHHHHHHHHHhccccCeeEEE
Q 022810 133 RIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 133 ~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+|++..+.+.+ .....++....+.|+|||+++-
T Consensus 105 ~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 105 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99998776655 2356777778899999999864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.8e-14 Score=119.26 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=99.8
Q ss_pred hhHHHhhcCC--ChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 8 DKAKEQHYEL--PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 8 ~~~~~~~yd~--~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
+.+++..|+. +.++++.++.... +.+.. ...+.......+...+. .+...+.+|||||||+|.++...+...
T Consensus 3 ~~~~~~~~~~f~~~~Y~~~~y~~~~----~~~~~-~~~~~~~~~~~~~~~f~-~g~~~g~~vLDiGcG~g~~~~~~~~~~ 76 (263)
T d2g72a1 3 QAAVASAYQRFEPRAYLRNNYAPPR----GDLCN-PNGVGPWKLRCLAQTFA-TGEVSGRTLIDIGSGPTVYQLLSACSH 76 (263)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHSTTT----TCCSS-TTSHHHHHHHHHHHHHH-TSCSCCSEEEEETCTTCCGGGTTGGGG
T ss_pred hhhHHHHHhhcCHHHHHHHHhCcCc----ccchh-hhhhhhhHHHHHHHHcC-CCCCCCcEEEEeccCCCHHHHHHhccc
Confidence 3456666765 2345555543211 11111 12233322333333332 244568899999999998876555443
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCC------------------------------CeEEEEccccCCc------cC-
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLELQ------------------------------NVEIIVADISTFE------ME- 128 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~~------------------------------~i~~~~~d~~~~~------~~- 128 (291)
..+|+|+|+|+.+++.+++++++.... ......+|+.... ..
T Consensus 77 -~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~ 155 (263)
T d2g72a1 77 -FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAP 155 (263)
T ss_dssp -CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSC
T ss_pred -CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCc
Confidence 568999999999999998876543210 1134455654321 11
Q ss_pred CCccEEEEcccccccc----cHHHHHHHHHhccccCeeEEEEeec
Q 022810 129 ASYDRIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++||+|++..+++++. ++..+++++.++|||||+|++..+.
T Consensus 156 ~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 156 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp SSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred CccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 5799999999999983 5788999999999999999987663
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.52 E-value=3.1e-14 Score=108.92 Aligned_cols=106 Identities=9% Similarity=0.171 Sum_probs=86.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-cC-CCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-ME-ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~-~~-~~~D~v~~~~~ 139 (291)
.+.+|||+|||+|.++..++.+. ..+|+++|.++.+++.+++++...+. ++++++++|+.... .. ++||+|++.++
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rg-a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhC-cceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 68899999999999999988774 35999999999999999999999888 46999999998742 22 78999999987
Q ss_pred ccccccHHHHHHHHH--hccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~ 170 (291)
+. -......+..+. +.|+|+|.++++....
T Consensus 93 y~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~ 124 (152)
T d2esra1 93 YA-KETIVATIEALAAKNLLSEQVMVVCETDKT 124 (152)
T ss_dssp SH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred hc-cchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence 63 233455666664 5699999999976544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=8e-15 Score=125.63 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~ 136 (291)
.++.+|||++||+|.++.+++.. +.+|+++|+|+.+++.|+++++.+|+++++++++|+.+.. .. ++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 36889999999999999998865 7799999999999999999999999988999999987742 22 68999999
Q ss_pred ccccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 137 IEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+++.... .++..++..+.++|+|||.|++.+.++
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 8764322 345678899999999999998876654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.52 E-value=5.4e-14 Score=114.11 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=90.1
Q ss_pred HHHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHHHh-----CCCCeEE
Q 022810 51 MLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKY------SNCKITGICNSKTQKEFIEEQCRVL-----ELQNVEI 117 (291)
Q Consensus 51 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~------p~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~i~~ 117 (291)
+...+++.+ .++++.+|||||||+|..+..+++.. ++.+|+++|.+++.++.|+++.... +..++.+
T Consensus 66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 445666666 67899999999999999999988763 2458999999999999999886543 3458999
Q ss_pred EEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 118 IVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 118 ~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+.+|......+ ++||.|++...+..+++ .+.+.|||||++++..
T Consensus 146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 146 VEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp EESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred EecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence 99999875544 89999999999887763 4678999999998754
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=2.4e-14 Score=118.99 Aligned_cols=105 Identities=21% Similarity=0.219 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
..++.+|||+|||+|.++..+++.. .++|+++|+|+.+++.++++++.++++ +++++++|+.++...+.||.|+++.+
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 3579999999999999999999874 579999999999999999999999994 69999999999876688999998755
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
- ....++..+.+.|+|||++.+....+
T Consensus 184 ~----~~~~~l~~a~~~l~~gG~lh~~~~~~ 210 (260)
T d2frna1 184 V----RTHEFIPKALSIAKDGAIIHYHNTVP 210 (260)
T ss_dssp S----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred C----chHHHHHHHHhhcCCCCEEEEEeccc
Confidence 3 23457778888999999987765543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=5.8e-14 Score=120.60 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=91.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc----cC-CCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE----ME-ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~----~~-~~~D~v 134 (291)
..++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++|+..+|+ ++++++++|+.+.. .. .+||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 3578999999999999999998763 35899999999999999999999999 57999999987642 12 689999
Q ss_pred EEccccccc---------ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 135 YSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+++++.... .++..++..+.++|+|||.|++.+.++.
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 998865322 2456788999999999999988776543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=9.5e-14 Score=109.90 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=98.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--- 126 (291)
.+++.+++.+...++..+||++||+|.++..+++++|+.+|+|+|.++.+++.|+++++..+. ++.++++++.++.
T Consensus 10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSYREADFLL 88 (192)
T ss_dssp TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCGGGHHHHH
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc-cccchhHHHhhHHHHH
Confidence 456677888888999999999999999999999999999999999999999999998877653 7999999987643
Q ss_pred --cC-CCccEEEEccccc---------ccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 --ME-ASYDRIYSIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 --~~-~~~D~v~~~~~l~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.. +++|.|+....+. .+......+..+.++|+|||.+++.++.
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 22 6899998765431 2244677899999999999999886654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=2.9e-13 Score=105.44 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----ccC-CCccEEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EME-ASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~----~~~-~~~D~v~ 135 (291)
...+.+|||+|||+|.++..++.+ +++++++|.|+.+++.++++++..+++ .++...+...+ ... .+||+|+
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~If 115 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLG-ARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCC-CEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccc-cceeeeehhcccccccccCCccceeE
Confidence 356889999999999999998877 789999999999999999999999883 34555554332 112 6899999
Q ss_pred EcccccccccHHHHHHHH--HhccccCeeEEEEeec
Q 022810 136 SIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~--~~~L~pgG~l~i~~~~ 169 (291)
+++++.. +....+..+ ..+|+|||+++++...
T Consensus 116 ~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 116 MAPPYAM--DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp ECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred Ecccccc--CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 9998643 233344444 3579999999987653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=2.5e-13 Score=112.90 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~ 128 (291)
.+++.++......+..+|+|+|||+|..+..+++ .|..+|+++|+|+.+++.|++|++..++. ++.+..+|+.+....
T Consensus 97 ~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~ 175 (271)
T d1nv8a_ 97 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE 175 (271)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG
T ss_pred hhhhhhhhhhccccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc
Confidence 3444444433333456899999999999999885 57899999999999999999999999884 688888998775433
Q ss_pred --CCccEEEEcccccccc---------cH----------HHHHHH-HHhccccCeeEEEEee
Q 022810 129 --ASYDRIYSIEMFEHMK---------NY----------QNLLKK-ISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 --~~~D~v~~~~~l~~~~---------~~----------~~~l~~-~~~~L~pgG~l~i~~~ 168 (291)
++||+|+||++.-.-. ++ -.++++ +.+.|+|||.+++...
T Consensus 176 ~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 176 KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7899999998742110 00 112222 4678999999988754
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.43 E-value=7.5e-13 Score=111.64 Aligned_cols=107 Identities=19% Similarity=0.141 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~-----~~~~D~v 134 (291)
.++.+|||++||+|.++..++.. +++|++||.|+.+++.|++|+..++++ +++++++|+.++.. ..+||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 46789999999999999999876 789999999999999999999999883 59999999987531 2789999
Q ss_pred EEcccccc---------c-ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEH---------M-KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~---------~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+++++-.. + .+...++..+.++|+|||.+++.+.+.
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 99876321 1 234567778899999999877765543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.8e-12 Score=102.05 Aligned_cols=106 Identities=15% Similarity=0.270 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
.+.+|||++||+|.++..++.+. ..+|+.||.++.+++.+++++...+..++.++.+|+..+... .+||+|++.+++
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecC-cceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 57899999999999999998874 358999999999999999999988887899999998775322 789999999987
Q ss_pred cccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022810 141 EHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~ 170 (291)
.. ......+..+.+ +|+++|.++++....
T Consensus 122 ~~-~~~~~~l~~l~~~~~L~~~~iIiiE~~~~ 152 (183)
T d2fpoa1 122 RR-GLLEETINLLEDNGWLADEALIYVESEVE 152 (183)
T ss_dssp ST-TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred cc-chHHHHHHHHHHCCCCCCCeEEEEEecCc
Confidence 53 456677777754 699999999976543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.39 E-value=3.9e-13 Score=114.65 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCc----cC-CCccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFE----ME-ASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~----~~-~~~D~ 133 (291)
..++.+|||++||+|.+++.++... ..+|++||+|+.+++.+++|+..+++ ++++++++|+.+.. .. .+||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3478999999999999999887652 34899999999999999999999988 47999999997642 12 68999
Q ss_pred EEEcccccc---------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|++.++-.. ..++..+++.+.++|+|||.|++++.++
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999876321 1457789999999999999999877544
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.38 E-value=2.6e-12 Score=100.89 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=88.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc----cC-CCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE----ME-ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~----~~-~~~D~v 134 (291)
..++.+|||++||+|.++..++.+. ..+|++||.++.+++.+++++...+. ++++++++|+.... .. .+||+|
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 3478999999999999999999884 34799999999999999999998887 47999999987642 12 589999
Q ss_pred EEcccccccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022810 135 YSIEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~ 170 (291)
++.+++. ..+....+..+.+ +|+|+|+++++....
T Consensus 118 flDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E~~~~ 154 (182)
T d2fhpa1 118 LLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 154 (182)
T ss_dssp EECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred Eechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence 9999874 3456777887754 699999998876544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.5e-12 Score=105.18 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-------CCCccEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-------EASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~-------~~~~D~v 134 (291)
+..++||+|||+|..+..++++.|+.+++|+|+|+.+++.|+++++.+++ +++.++..+...... .++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 45699999999999999999998899999999999999999999999998 468888776544221 1579999
Q ss_pred EEccccccc
Q 022810 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+||+++...
T Consensus 141 vsNPPY~~~ 149 (250)
T d2h00a1 141 MCNPPFFAN 149 (250)
T ss_dssp EECCCCC--
T ss_pred EecCccccc
Confidence 999998643
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.37 E-value=3.8e-12 Score=104.53 Aligned_cols=112 Identities=18% Similarity=0.122 Sum_probs=89.0
Q ss_pred HHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.....+++.+. .....+|||||||+|..+..+++++|+.+++.+|+ +..++.+ ...++++++.+|+.+.. +
T Consensus 67 ~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~~~-p 138 (244)
T d1fp1d2 67 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA------PPLSGIEHVGGDMFASV-P 138 (244)
T ss_dssp HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCCTTEEEEECCTTTCC-C
T ss_pred HHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc------CCCCCeEEecCCccccc-c
Confidence 34456666676 46678999999999999999999999999999998 4433211 12258999999997643 3
Q ss_pred CCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..|++++..++|+.++ ...+|+++++.|+|||.++|.+...
T Consensus 139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~ 181 (244)
T d1fp1d2 139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 181 (244)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence 4599999999999965 5679999999999999999977643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=4.7e-12 Score=101.04 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=70.6
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
+...+...|.+|||+|||+|.++..++... ..+|+|+|+++.+++.+++++...+. +..++.+|+..+ ..+||+|+
T Consensus 39 ~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~--~~~fD~Vi 114 (201)
T d1wy7a1 39 AYSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--NSRVDIVI 114 (201)
T ss_dssp HHHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--CCCCSEEE
T ss_pred HHhcCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh--CCcCcEEE
Confidence 344555578999999999999999888763 46999999999999999999988876 789999998775 37899999
Q ss_pred Eccccccc
Q 022810 136 SIEMFEHM 143 (291)
Q Consensus 136 ~~~~l~~~ 143 (291)
+++++...
T Consensus 115 ~nPP~~~~ 122 (201)
T d1wy7a1 115 MNPPFGSQ 122 (201)
T ss_dssp ECCCCSSS
T ss_pred EcCccccc
Confidence 99987554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.1e-11 Score=99.80 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~ 124 (291)
.+...+..+++.. ...+|||||||+|..+..+++..| +.+++.+|.+++..+.|++++...|+ ++++++.+|+.+
T Consensus 46 ~~g~lL~~L~~~~---~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e 122 (219)
T d2avda1 46 EQAQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 122 (219)
T ss_dssp HHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHcc---CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence 3455566666544 467999999999999999998765 68999999999999999999999998 569999999866
Q ss_pred Cc-------cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 125 FE-------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 125 ~~-------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. ..++||+|+...-- .++...++.+.+.|+|||++++...
T Consensus 123 ~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 123 TLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred cchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 32 12689999997533 4667888999999999999998654
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.6e-11 Score=96.56 Aligned_cols=112 Identities=16% Similarity=0.259 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
+.++.+. .+..-++.+|+|+|||.|..++.++-.+|..+++.+|.+..-+...++.....+++++++++..+++.....
T Consensus 53 Hi~DSl~-~~~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~ 131 (207)
T d1jsxa_ 53 HILDSIV-VAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEP 131 (207)
T ss_dssp HHHHHHH-HGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCS
T ss_pred HhcchHh-hhhhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcccc
Confidence 4444443 233335679999999999999999999999999999999999999999999999989999999999876557
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+||+|++..+ .....+++-+...++++|.+++-
T Consensus 132 ~fD~V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 132 PFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ccceehhhhh----cCHHHHHHHHHHhcCCCcEEEEE
Confidence 8999999754 46788999999999999998774
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=1.2e-11 Score=99.55 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccc
Q 022810 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI 122 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~ 122 (291)
...+.+.+..+++.. .+.+|||||||+|..+..+++.. ++.+++++|.++.+.+.|++++...|+ ++++++.+|.
T Consensus 41 ~~~~G~lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~ 117 (214)
T d2cl5a1 41 GDAKGQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS 117 (214)
T ss_dssp HHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc
Confidence 444455666666654 45799999999999999999876 368999999999999999999999998 5799999998
Q ss_pred cCCcc------C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 123 STFEM------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 123 ~~~~~------~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+... . .+||+|+....-... .....+.+..++|+|||++++...
T Consensus 118 ~e~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 118 QDLIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp HHHGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESCC
T ss_pred cccccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeCc
Confidence 76421 1 579999987432111 122346667789999999877543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.28 E-value=6.5e-12 Score=99.29 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
+.-.|.+|||+|||+|.++..++... ..+|+++|+++.+++.|++|+ .++.++++|+.+++ ++||+|+++++
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l~--~~fD~Vi~NPP 116 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEIS--GKYDTWIMNPP 116 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHcc-----ccccEEEEehhhcC--CcceEEEeCcc
Confidence 44468999999999999998888763 458999999999999988764 36889999998764 78999999998
Q ss_pred ccc
Q 022810 140 FEH 142 (291)
Q Consensus 140 l~~ 142 (291)
+..
T Consensus 117 fg~ 119 (197)
T d1ne2a_ 117 FGS 119 (197)
T ss_dssp C--
T ss_pred cch
Confidence 743
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.24 E-value=5.5e-11 Score=96.16 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC
Q 022810 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF 125 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~ 125 (291)
+-+.+..+++.. ...+|||||+++|..+..+++..| +.+++.+|.+++..+.|++++.+.|. ++++++.+|+.+.
T Consensus 47 ~g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~ 123 (227)
T d1susa1 47 EGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 123 (227)
T ss_dssp HHHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH
Confidence 345566666554 467999999999999999998875 68999999999999999999999998 5799999999764
Q ss_pred cc--------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 EM--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~--------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.. .++||+|+...-- ..+...++.+.+.|+|||++++..
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEET
T ss_pred HHHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEcc
Confidence 21 2579999997532 567889999999999999998854
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.17 E-value=1.7e-10 Score=98.92 Aligned_cols=113 Identities=11% Similarity=0.067 Sum_probs=89.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (291)
..+...++.+|||.|||+|.++..+..+. +..+++|+|+++.++..|+.++...+. +..+.++|........+|
T Consensus 111 ~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~f 189 (328)
T d2f8la1 111 KVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPV 189 (328)
T ss_dssp HHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCE
T ss_pred HHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhccccccccccccc
Confidence 33456678899999999999998887542 235799999999999999998887776 677778887665545899
Q ss_pred cEEEEccccccccc------------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMKN------------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~~------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+|++++++..... ...++..+.+.|+|||++.+..|..
T Consensus 190 D~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 190 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred cccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 99999998743211 2347999999999999998887754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.15 E-value=3e-10 Score=89.02 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCc---cC-CCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE---ME-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~---~~-~~~D~v~~ 136 (291)
.+.+|||+.||+|.++.+.+.+. ..+|+.||.+...++.++++++..+.. ...+...|+.+.. .. .+||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 57899999999999999999884 458999999999999999999988763 4667777765422 22 57999999
Q ss_pred cccccccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022810 137 IEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~ 170 (291)
.+++.. ......+..+.+ +|+++|.++++....
T Consensus 122 DPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 122 DPPFHF-NLAEQAISLLCENNWLKPNALIYVETEKD 156 (183)
T ss_dssp CCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred chhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence 999754 446677777754 799999999987644
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=5.2e-10 Score=96.92 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 022810 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~ 123 (291)
-......+++.+++.+...++.+|||+.||+|.++..|++. ..+|+|+|.++.+++.|+++++.++++|++++.+|.+
T Consensus 193 N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~ 270 (358)
T d1uwva2 193 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE 270 (358)
T ss_dssp BHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred chhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchh
Confidence 34555677888888888888999999999999999999987 6899999999999999999999999999999999987
Q ss_pred CCcc----C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 124 TFEM----E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 124 ~~~~----~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+... . .++|+|+.+++=..+ .+.++.+.+ ++|.-++|+++
T Consensus 271 ~~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~-~~~~~ivYVSC 315 (358)
T d1uwva2 271 EDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC 315 (358)
T ss_dssp SCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred hhhhhhhhhhccCceEEeCCCCccH---HHHHHHHHH-cCCCEEEEEeC
Confidence 7431 1 679999999887654 245666665 36777777763
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.09 E-value=5.2e-10 Score=91.60 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=84.5
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
....++..... ....+|||||||+|..+..+++++|+.+++++|+.+. ++.+. ..++++++.+|+.+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~------~~~r~~~~~~d~~~~~-P- 138 (243)
T d1kyza2 68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP------SYPGVEHVGGDMFVSI-P- 138 (243)
T ss_dssp HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC------CCTTEEEEECCTTTCC-C-
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc------cCCceEEecccccccC-C-
Confidence 34455565554 3457899999999999999999999999999998543 22111 1257999999997643 3
Q ss_pred CccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 130 SYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
..|+++...++|..+ +...+|+++++.|+|||.+++.+..
T Consensus 139 ~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 139 KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 357788888888874 4677999999999999999887654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.09 E-value=3.2e-10 Score=92.82 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
....+|||||||+|..+..+++++|+.++++.|+ +..++. .+. ++++++.+|+.+.. ..+|++++..++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~~~rv~~~~gD~f~~~--p~aD~~~l~~vL 148 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN-------LSGSNNLTYVGGDMFTSI--PNADAVLLKYIL 148 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCCBTTEEEEECCTTTCC--CCCSEEEEESCG
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh-------CcccCceEEEecCcccCC--CCCcEEEEEeec
Confidence 3457899999999999999999999999999998 443332 222 58999999998743 357999999999
Q ss_pred cccccH--HHHHHHHHhccccC---eeEEEEeec
Q 022810 141 EHMKNY--QNLLKKISKWMKED---TLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~--~~~l~~~~~~L~pg---G~l~i~~~~ 169 (291)
|+.++. .++|+++++.|+|| |+++|....
T Consensus 149 Hdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 149 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred ccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 999654 57999999999998 677776543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.05 E-value=4.9e-10 Score=91.02 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.+.+.++.+|||||||+|.++..+++. +.+|++||+++.+++.++++.... ++++++.+|+.++..+
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~--~n~~i~~~D~l~~~~~ 82 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFP 82 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCC
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcc--cchhhhhhhhhhcccc
Confidence 356778888888899999999999999999999988 789999999999999888766433 4899999999988765
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
.....|+++.++
T Consensus 83 ~~~~~~vv~NLPY 95 (235)
T d1qama_ 83 KNQSYKIFGNIPY 95 (235)
T ss_dssp SSCCCEEEEECCG
T ss_pred ccccceeeeeehh
Confidence 444567787776
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.05 E-value=6.1e-10 Score=87.95 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCcchHH----HHHHHHC----CCCEEEEEcCCHHHHHHHHHHH--------------HH----hCC---
Q 022810 62 EDGHTVLDVGCGWGSLS----LYIAQKY----SNCKITGICNSKTQKEFIEEQC--------------RV----LEL--- 112 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~----~~l~~~~----p~~~v~~vD~s~~~~~~a~~~~--------------~~----~~~--- 112 (291)
.+..+|+++|||+|.-. ..+.+.. ...+++|+|+|+.+++.|++.. .. .+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 45679999999999843 3333321 1357999999999999887411 00 000
Q ss_pred ----------CCeEEEEccccCCcc--CCCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEE
Q 022810 113 ----------QNVEIIVADISTFEM--EASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 113 ----------~~i~~~~~d~~~~~~--~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+.+...+...... .++||+|+|.+++.+++. ..++++++.+.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 124455555544332 278999999999999954 468999999999999998873
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=99.04 E-value=1.6e-09 Score=87.70 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCccEEEEc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYSI 137 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~D~v~~~ 137 (291)
.+..+|+|||+|.|..++.++-.+|..+++.+|.+..-+...+......+++++.+++..+++... .++||+|++.
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 356799999999999999999889999999999999999999999999999999999998886532 2689999998
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+ .....+++-+...+++||.+++-
T Consensus 149 Av----a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 149 AV----ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp CC----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred hh----hCHHHHHHHHhhhcccCCEEEEE
Confidence 54 46788999999999999998773
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=1.7e-10 Score=97.79 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--C---CCCeEEEEccccCCccC--CCccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--E---LQNVEIIVADISTFEME--ASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~---~~~i~~~~~d~~~~~~~--~~~D~ 133 (291)
.+.+.+||.||+|.|..+..+.+..+..+|++||+++..++.+++.+... + -++++++.+|+..+... ++||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 45678999999999999999987766789999999999999999887542 1 14799999999886422 78999
Q ss_pred EEEccc--cc-c-c---ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 134 IYSIEM--FE-H-M---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 134 v~~~~~--l~-~-~---~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|++... .. . . --..++++.+++.|+|||++++...+
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 997652 11 1 1 11367999999999999999886543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.97 E-value=1.1e-09 Score=88.16 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...+.+++.+...++.+|||.|||+|.++..+.+..+ ...++|+|+++..+..+ .+..++++|.......
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~~~ 76 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPG 76 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCS
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccccc
Confidence 3456677888888999999999999999988876643 46799999998753221 2467788888776655
Q ss_pred CCccEEEEcccccccc-----------------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEMFEHMK-----------------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~-----------------------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.+||+|++++++.... -...++.++.+.|+|||++.+..+..
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 8999999998864321 02456788899999999998887654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=6.1e-10 Score=93.19 Aligned_cols=110 Identities=15% Similarity=0.027 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~~--~~~D~v 134 (291)
.+.+.+||-||.|.|..+..+.+..+..+|++||+++.+++.+++.+.... -++++++.+|+..+... ++||+|
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 356789999999999999999977666799999999999999998765431 25899999999886433 789999
Q ss_pred EEccccccc-c----cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEHM-K----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~-~----~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++...-... + -..++++.+++.|+|||++++...++
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 986533211 1 13689999999999999998876543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.97 E-value=7e-10 Score=92.36 Aligned_cols=109 Identities=9% Similarity=0.023 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----------CCCCeEEEEccccCCccC-C
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----------ELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~i~~~~~d~~~~~~~-~ 129 (291)
..++.+||.||+|.|..+..+.+ ++..+|++||+++..++.+++.+... ..++++++.+|+..+... +
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 45678999999999999999886 45679999999999999998765321 125799999999875433 7
Q ss_pred CccEEEEcccccccc----cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|++...-..-. ...++++.+++.|+|||++++...++
T Consensus 149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~ 193 (276)
T d1mjfa_ 149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 193 (276)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence 899999865432111 12679999999999999998876544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.2e-09 Score=91.12 Aligned_cols=112 Identities=14% Similarity=0.091 Sum_probs=86.4
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----CCCCeEEEEccccCCccC--CCcc
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVADISTFEME--ASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~----~~~~i~~~~~d~~~~~~~--~~~D 132 (291)
+..+.+.+||-||.|.|..+..+.+..+..++++||+++..++.+++.+... .-++++++.+|+..+... ++||
T Consensus 74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 74 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred hhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 3456678999999999999999997656789999999999999999876532 125899999998875432 7899
Q ss_pred EEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 133 RIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|++...-..- --..++++.+++.|+|||++++...++
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 99987532111 113568999999999999999876554
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.89 E-value=2.4e-10 Score=93.39 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
..++.+++.+.+.++.+|||||||+|.++..|++. +.+|++||+++.+++.+++++.. .++++++++|+.++..+
T Consensus 16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh--ccchhhhhhhhhcccccc
Confidence 34567788888899999999999999999999998 78999999999988877665532 24899999999998777
Q ss_pred CCccEEEEccccc
Q 022810 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~v~~~~~l~ 141 (291)
..++.|+++.+++
T Consensus 92 ~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 92 KQRYKIVGNIPYH 104 (245)
T ss_dssp SSEEEEEEECCSS
T ss_pred ceeeeEeeeeehh
Confidence 6677788888863
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.88 E-value=1.8e-09 Score=89.61 Aligned_cols=110 Identities=20% Similarity=0.076 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-C---CCCeEEEEccccCCccC--CCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-E---LQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-~---~~~i~~~~~d~~~~~~~--~~~D~v 134 (291)
..++.+||-||.|.|..+..+.+..+..+|++||+++..++.+++.+... + -++++++.+|+...... ++||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 45678999999999999999997655679999999999999999876532 1 24799999998875432 789999
Q ss_pred EEccccccc--c--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEHM--K--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~--~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++...-..- . -..++++.+++.|+|||+++....++
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 987532111 1 24689999999999999998875443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.87 E-value=3.5e-09 Score=93.74 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-------------CCEEEEEcCCHHHHHHHHHHHHHhCCC--
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-------------NCKITGICNSKTQKEFIEEQCRVLELQ-- 113 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~-- 113 (291)
....+.+++.+...++.+|+|.+||+|.+...+.+... ...+.|+|+++.....|+.++.-.+..
T Consensus 148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence 34566777777777889999999999999988876421 135999999999999999888877762
Q ss_pred CeEEEEccccCCccCCCccEEEEcccccccc-----------------cHHHHHHHHHhccccCeeEEEEeec
Q 022810 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMK-----------------NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 114 ~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~-----------------~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+..+...|........+||+|++++++.... ....++..+.+.|++||++.+..|.
T Consensus 228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 4567788877655558899999999984321 1345999999999999998888775
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.86 E-value=1.4e-09 Score=91.35 Aligned_cols=110 Identities=16% Similarity=0.059 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~~--~~~D~v 134 (291)
.+.+.+||-||.|.|..+..+.+..+..+|++||+++..++.+++.+.... -++++++.+|+..+... ++||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 456789999999999999999976555799999999999999998764321 15799999999875432 789999
Q ss_pred EEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++...-..- --..++++.+++.|+|||+++....+.
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 986532111 123678999999999999999875443
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.85 E-value=3.2e-09 Score=88.77 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=86.5
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCcc--C-CCcc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--E-ASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~--~-~~~D 132 (291)
..+...+||-||.|.|..+..+.+..|..++++||+++..++.+++.+.... -++++++.+|...... . ++||
T Consensus 77 ~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 77 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 3456789999999999999999976656799999999999999998764321 2589999999877542 2 5899
Q ss_pred EEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 133 RIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 133 ~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|++...-..- --..++++.+++.|+|||++++...++
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 99986532111 113679999999999999999976544
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=7.6e-09 Score=80.38 Aligned_cols=113 Identities=11% Similarity=0.137 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--- 127 (291)
+++.+++.+...++..++|..+|.|+++..+.+. +.+|+|+|.++.+++.+++. ..+++.+++.+..++..
T Consensus 6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHH
Confidence 4667778888899999999999999999999987 67999999999988877653 23579999998877531
Q ss_pred --C-CCccEEEEccccccc---------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 128 --E-ASYDRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 --~-~~~D~v~~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
. +.+|.|++..-+... ......|....+.|+|||.+++.++.
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 2 679999986643222 23455788889999999999887664
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=2.3e-08 Score=83.37 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=89.5
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEE
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRI 134 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~v 134 (291)
..+...++.+|||+++|.|+=+..+++...+..|+++|.++..+..++++++..|.+++.....|..... .+..||.|
T Consensus 96 ~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~I 175 (284)
T d1sqga2 96 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRI 175 (284)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred cccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEE
Confidence 3457789999999999999999999988767899999999999999999999999866665555544322 22689999
Q ss_pred EEccccccc------cc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++..+-... ++ ..++|.++.+.|||||+++-++.+.
T Consensus 176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 986643211 11 4568999999999999988877654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.7e-08 Score=82.25 Aligned_cols=90 Identities=13% Similarity=0.254 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~ 127 (291)
...++.+++.+...++..|||||+|.|.++..|++. +.+|++||+++.+++..++.+..... ++++++.+|+.....
T Consensus 7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 355677788888889999999999999999999998 67999999999999999988766544 579999999988765
Q ss_pred CCCccEEEEccccc
Q 022810 128 EASYDRIYSIEMFE 141 (291)
Q Consensus 128 ~~~~D~v~~~~~l~ 141 (291)
+ .++.|+++.+++
T Consensus 85 ~-~~~~vV~NLPY~ 97 (278)
T d1zq9a1 85 P-FFDTCVANLPYQ 97 (278)
T ss_dssp C-CCSEEEEECCGG
T ss_pred h-hhhhhhcchHHH
Confidence 4 457888888773
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.75 E-value=5.2e-08 Score=82.25 Aligned_cols=114 Identities=16% Similarity=0.072 Sum_probs=91.6
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEE
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRI 134 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v 134 (291)
..+...+|.+|||++||.|+=+..++.... ...++++|.++..+..++++++..+..++.....|....... ..||.|
T Consensus 110 ~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~I 189 (313)
T d1ixka_ 110 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI 189 (313)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred hcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEE
Confidence 345678999999999999999888887653 568999999999999999999999998888888887766543 789999
Q ss_pred EEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~------~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++..+-... + -..+++.++.+.|||||+++-++.+.
T Consensus 190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 986642111 1 13568889999999999988877654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.8e-07 Score=78.14 Aligned_cols=113 Identities=12% Similarity=-0.059 Sum_probs=86.2
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~ 131 (291)
..+...++.+|||+++|.|+-+.++++.. +...++++|+++.-++.++++++..|++++.+...|...+... ++|
T Consensus 88 ~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~f 167 (293)
T d2b9ea1 88 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV 167 (293)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred cccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccccccee
Confidence 34567889999999999999988888763 4678999999999999999999999998899999998775432 679
Q ss_pred cEEEEccccccc------c------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHM------K------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~------~------------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|.|++..+-... + -...++..+. .|+|||.|+-++.+.
T Consensus 168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 999997642111 0 0123455555 479999887766643
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=3.5e-08 Score=80.54 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++..|||||||.|.++..|++. +.+|++||+++.+++..++..... ++++++.+|+.++...
T Consensus 7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~~~ 82 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhccc
Confidence 355677788888888999999999999999999987 689999999999988887643222 4799999999886533
Q ss_pred ------CCccEEEEccccc
Q 022810 129 ------ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ------~~~D~v~~~~~l~ 141 (291)
+..-.|+++.+++
T Consensus 83 ~~~~~~~~~~~vvgNlPY~ 101 (252)
T d1qyra_ 83 ELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHHTSCEEEEEECCTT
T ss_pred ccccccCCCeEEEecchHH
Confidence 2223677777764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.58 E-value=9.8e-08 Score=82.31 Aligned_cols=103 Identities=16% Similarity=0.018 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC---------------eEEEEccccCCcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN---------------VEIIVADISTFEM 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~---------------i~~~~~d~~~~~~ 127 (291)
.+.+|||..||+|..++..+...+..+|+++|+|+..++.+++|++.++.++ +.+.+.|+.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 5779999999999999988777666799999999999999999999887532 5566677655432
Q ss_pred C--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 128 E--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 ~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
. ..||+|...+ + ..+..+++.+.+.++.||.|+++...
T Consensus 125 ~~~~~fDvIDiDP-f---Gs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCC-C---CCcHHHHHHHHHHhccCCEEEEEecC
Confidence 2 6799999876 2 34567899999999999999997543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=7.3e-08 Score=87.24 Aligned_cols=147 Identities=8% Similarity=0.028 Sum_probs=88.3
Q ss_pred cCCChHHHHHhhCCC---CCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC----C-
Q 022810 15 YELPTSFFKLVLGKY---FKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----S- 86 (291)
Q Consensus 15 yd~~~~~y~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----p- 86 (291)
.|...+.|+.++... ..-..|.|-.+ ...++.+++.+...++.+|+|.+||+|.+...+.+.. .
T Consensus 121 ~D~lG~~YE~ll~~~~~~~~~~~GqfyTP--------~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~ 192 (524)
T d2ar0a1 121 RDDFGDMYEGLLQKNANETKSGAGQYFTP--------RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 192 (524)
T ss_dssp ------------------------CCCCC--------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTT
T ss_pred hhHHHHHHHHHHHHHHhhhccccchhccc--------cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCc
Confidence 355567788877431 11111323211 3455667777777888999999999999988766531 0
Q ss_pred -------------CCEEEEEcCCHHHHHHHHHHHHHhCCC-----CeEEEEccccCCcc--CCCccEEEEcccccccc--
Q 022810 87 -------------NCKITGICNSKTQKEFIEEQCRVLELQ-----NVEIIVADISTFEM--EASYDRIYSIEMFEHMK-- 144 (291)
Q Consensus 87 -------------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~i~~~~~d~~~~~~--~~~~D~v~~~~~l~~~~-- 144 (291)
...++|+|+++.....|+-++.-.+.+ ...+...+...... ..+||+|++++++....
T Consensus 193 ~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~ 272 (524)
T d2ar0a1 193 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT 272 (524)
T ss_dssp TTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSC
T ss_pred ccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccc
Confidence 125899999999999998888766542 11233444333211 16799999999884321
Q ss_pred ------------cHHHHHHHHHhccccCeeEEEEeec
Q 022810 145 ------------NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 145 ------------~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
....++..+.+.|+|||++.+..|.
T Consensus 273 ~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~ 309 (524)
T d2ar0a1 273 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 309 (524)
T ss_dssp CCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence 1345899999999999999888775
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=7.6e-07 Score=68.74 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=78.1
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022810 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--- 126 (291)
+.++.++.. ++++.+||||||+.|..+..+.+.. +...++++|+.+- ..++++.++.+|+.+..
T Consensus 10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~ 78 (180)
T d1ej0a_ 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMK 78 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHH
T ss_pred HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhh
Confidence 334444444 3688999999999999999988764 3478999998663 23567899999987642
Q ss_pred ------cCCCccEEEEcccccccc----c-------HHHHHHHHHhccccCeeEEEEeec
Q 022810 127 ------MEASYDRIYSIEMFEHMK----N-------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ------~~~~~D~v~~~~~l~~~~----~-------~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
...++|+|+|..+..... | ....+.-+.++|++||.+++-.+.
T Consensus 79 ~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 79 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 115799999987653321 1 234566678899999999998764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.37 E-value=5.8e-07 Score=72.20 Aligned_cols=109 Identities=11% Similarity=0.152 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
..+..++..+ .+.+|||||++.|..+..++.. .+..+++++|+++...... ....++++++.+|..+.
T Consensus 70 ~~~~eli~~~---KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~ 141 (232)
T d2bm8a1 70 AVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDL 141 (232)
T ss_dssp HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCS
T ss_pred HHHHHHHHHh---CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccH
Confidence 3445566554 3669999999999988777643 2568999999987543221 11235899999997654
Q ss_pred cc----C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 126 EM----E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 126 ~~----~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. . ..+|+|+.... |+-.....-+ .+...|+|||++++.+.
T Consensus 142 ~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 142 TTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred HHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 32 1 46898887654 3333222223 35689999999999654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.09 E-value=1.6e-06 Score=69.29 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.++..+.++..+.+..+|+|||||.|..+..++.+.+...+.|+++--...+ ........+.+-+++...+--....+.
T Consensus 53 ~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~l~~~ 131 (257)
T d2p41a1 53 AKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFFIPPE 131 (257)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhhhhHHhcCCC
Confidence 3456666666778888999999999999999998754567888887322100 000000001111344433322222337
Q ss_pred CccEEEEccccccc-c-----cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHM-K-----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~-~-----~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..|+|+|...-..- + ....+++-+.+.|+|||-+++-.+++
T Consensus 132 ~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 132 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred cCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 89999998542211 0 12356777789999999998877653
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.07 E-value=5.2e-06 Score=66.88 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=68.1
Q ss_pred HHHHHHcCCCCC--CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---------CCCeEEEEcc
Q 022810 53 ELYCERSRLEDG--HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------LQNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~i~~~~~d 121 (291)
+.+.+.++++++ .+|||.-||.|..+..++.. +++|+++|-++......+..+.... ..+++++++|
T Consensus 76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 345555666544 48999999999999999988 8999999999987777665544321 1378999999
Q ss_pred ccCCccC--CCccEEEEccccccc
Q 022810 122 ISTFEME--ASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~~--~~~D~v~~~~~l~~~ 143 (291)
..++... .+||+|+..+++.+-
T Consensus 154 s~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHHHhccCCCCCEEEECCCCccc
Confidence 8775432 679999999998654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.75 E-value=0.00031 Score=52.87 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=68.9
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022810 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------- 126 (291)
+++.+++++.+||-+||| .|..+..+++.. +++|+++|.+++.++.+++ .+. ...+..-+.....
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~----~ga-~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGA-DVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTC-SEEEECCTTTSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH----cCC-cEEEeccccccccchhhhhhh
Confidence 456678899999999998 577788888776 8899999999997777665 333 2222221111110
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+|+|+-... ....+..+.++++|+|++++..
T Consensus 93 ~~~g~g~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 93 SAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred cccccCCceeeecCC------ChHHHHHHHHHHhcCCceEEEe
Confidence 1246898875432 2467888889999999988754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.65 E-value=4.8e-05 Score=57.58 Aligned_cols=102 Identities=18% Similarity=0.114 Sum_probs=67.2
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCcc
Q 022810 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYD 132 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D 132 (291)
+.+.+.+++.+||-+|+| .|..+..+++.. +++|+++|.+++.++.+++ .|.+. .+...+-.+.. ..+.+|
T Consensus 20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~----lGa~~-~i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADH-YIATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp HHHTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE-EEEGGGTSCHHHHSCSCEE
T ss_pred HHHhCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc----cCCcE-EeeccchHHHHHhhhcccc
Confidence 445678899999999998 677888888765 8999999999998777654 45421 11112211111 126799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+....-.+- ..+....+.|+|+|++++..
T Consensus 94 ~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 94 LIVVCASSLTD----IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEEECCSCSTT----CCTTTGGGGEEEEEEEEECC
T ss_pred eEEEEecCCcc----chHHHHHHHhhccceEEEec
Confidence 88764322111 12445778899999988754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.52 E-value=0.00034 Score=54.08 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=71.3
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc-CC-------c
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-TF-------E 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~-~~-------~ 126 (291)
+++.+++++.+||-+|||. |..+..+++.....+|+++|.++..++.|++ .|. ..+.-... ++ .
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga---~~~~~~~~~~~~~~i~~~t 90 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---EIADLSLDTPLHEQIAALL 90 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---EEEETTSSSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh----ccc---cEEEeCCCcCHHHHHHHHh
Confidence 4567889999999999997 6677777877655699999999998777664 343 22221111 11 1
Q ss_pred cCCCccEEEEccccc------c---cccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 MEASYDRIYSIEMFE------H---MKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~------~---~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
....+|+++-.--.. . .......++.+.+.++|||.+.+.-.
T Consensus 91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 124588888542211 1 12345789999999999999887644
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.51 E-value=0.00011 Score=61.72 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCC------CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022810 49 KAMLELYCERSRL------EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 49 ~~~~~~~~~~~~~------~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~ 122 (291)
...++.+++.+++ ..+..|||||+|.|.++..+.+.....+|+++|+++...+..++... + ++++++.+|+
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~-~~~~ii~~D~ 99 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--G-SPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--T-SSCEEECSCT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--C-CCcEEEeCch
Confidence 3445556655543 25678999999999999999876423589999999999988877653 2 4789999998
Q ss_pred cCC
Q 022810 123 STF 125 (291)
Q Consensus 123 ~~~ 125 (291)
..+
T Consensus 100 l~~ 102 (322)
T d1i4wa_ 100 YDW 102 (322)
T ss_dssp TCH
T ss_pred hhc
Confidence 653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.0009 Score=50.31 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=67.8
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------- 126 (291)
+++.+++++.+||=+|||. |..+..+++.. ++ +|+++|.++..++.|++ .|.+. ++..+-.+..
T Consensus 19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~----~Ga~~--~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKE----IGADL--VLQISKESPQEIARKVE 91 (171)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH----TTCSE--EEECSSCCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHH----hCCcc--ccccccccccccccccc
Confidence 4566788999999999985 55666777766 55 89999999997776654 34421 2222212110
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+|+|+-... ....++...+.+++||++++..
T Consensus 92 ~~~g~g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 92 GQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp HHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCCCceEEEeccC------CchhHHHHHHHhcCCCEEEEEe
Confidence 1146898886432 2567888999999999988754
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.43 E-value=0.00028 Score=56.52 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC----CC------------------------------------CE
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----SN------------------------------------CK 89 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----p~------------------------------------~~ 89 (291)
.++...+.......+..++|..||+|++.+..+... || ..
T Consensus 37 ~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~ 116 (249)
T d1o9ga_ 37 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 116 (249)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCC
Confidence 344444444555667789999999999998876531 11 24
Q ss_pred EEEEcCCHHHHHHH---HHHHHHhCCC-CeEEEEccccCCcc------CCCccEEEEccccccc---------ccHHHHH
Q 022810 90 ITGICNSKTQKEFI---EEQCRVLELQ-NVEIIVADISTFEM------EASYDRIYSIEMFEHM---------KNYQNLL 150 (291)
Q Consensus 90 v~~vD~s~~~~~~a---~~~~~~~~~~-~i~~~~~d~~~~~~------~~~~D~v~~~~~l~~~---------~~~~~~l 150 (291)
+.|.|+++.+++.| ++|+...|+. .+.+...|+.+... +...++|++|++.-.- +.+..+.
T Consensus 117 i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~ 196 (249)
T d1o9ga_ 117 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 196 (249)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHH
Confidence 57888889988888 4578888884 68999999876432 2567999999987433 1245667
Q ss_pred HHHHhccccCeeEEEE
Q 022810 151 KKISKWMKEDTLLFVH 166 (291)
Q Consensus 151 ~~~~~~L~pgG~l~i~ 166 (291)
..+.+.+....+++++
T Consensus 197 ~~l~~~~p~~s~~~it 212 (249)
T d1o9ga_ 197 RSLASALPAHAVIAVT 212 (249)
T ss_dssp HHHHHHSCTTCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 7778888555555553
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=0.00032 Score=53.49 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=65.9
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccCC------
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DISTF------ 125 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~---d~~~~------ 125 (291)
+...+++|.+||-+||| .|..+..+++.. |+ +|+++|.+++.++.+++ .|.+ .++.. +..+.
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEE----IGAD--LTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheeccccc-cccccccccccccccccccc----ccce--EEEeccccchHHHHHHHHH
Confidence 33456789999999998 478888888877 65 89999999998877754 3432 12211 11111
Q ss_pred -ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 -EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.....+|+|+-.-.- ...++...+.|+|||++++..
T Consensus 95 ~~~~~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 95 ITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred hhCCCCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEe
Confidence 112458988854211 345778889999999987753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.35 E-value=0.00098 Score=49.78 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=64.0
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-C
Q 022810 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-A 129 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~ 129 (291)
+++.+.+++.+||=+|+| .|..+..+++.. +.+|+++|.++..++.+++ .|.+ .++..+-.+... . .
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK----LGAS--LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHS
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc----cCcc--ccccccchhHHHHHHHhhc
Confidence 355678899999999998 467777788776 7999999999987766653 4542 223222222110 1 2
Q ss_pred Ccc-EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D-~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+| .|++... ...++...+.|+|+|++++.
T Consensus 93 g~~~~i~~~~~-------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 93 GAHGVLVTAVS-------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SEEEEEECCSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred CCccccccccc-------chHHHHHHHHhcCCcEEEEE
Confidence 334 4433221 35678888999999998774
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.32 E-value=0.00046 Score=52.26 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=68.0
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------- 126 (291)
++...++++.+||=+|||. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+ .++.-.-.+..
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~----lGa~--~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKF----YGAT--DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHH----HTCS--EEECGGGSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHHh----hCcc--ccccccchhHHHHHHHHh
Confidence 4667889999999999996 88888888876 54 79999999987776653 4432 22222111111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+|+|+-.-.. ...++...+.++|+|.+++..
T Consensus 93 ~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 93 NGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred hccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 11458988764322 345777889999999988854
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.31 E-value=0.00084 Score=50.70 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=69.1
Q ss_pred HHHHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022810 53 ELYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----- 126 (291)
..+++..+.+++.+||=+|||. |..+..+++......++++|.++..++.+++ .|.+ .++..+-.+..
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~i~~ 91 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT--HVINSKTQDPVAAIKE 91 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe--EEEeCCCcCHHHHHHH
Confidence 3445667788999999999984 5566777766644578889999987777654 3442 23333222211
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.++.+|+|+-.-. ....++.+.+.++|+|++++..
T Consensus 92 ~t~gg~D~vid~~G------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 92 ITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECC
T ss_pred HcCCCCcEEEEcCC------cHHHHHHHHhcccCceEEEEEe
Confidence 1256898885422 2567788899999999987743
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00047 Score=52.11 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=67.4
Q ss_pred HHHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022810 54 LYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----- 126 (291)
.+.+..+++++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.++ +.|.+. ++ |..+..
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~----~~Ga~~--vi--~~~~~~~~~~i 89 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAHE--VF--NHREVNYIDKI 89 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSE--EE--ETTSTTHHHHH
T ss_pred HHHHHhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccc----ccCccc--cc--ccccccHHHHh
Confidence 3445567889999999996 4678888888877 899999998887655554 455532 22 222211
Q ss_pred ----cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 ----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
....+|+|+.... ...++...++|+|+|.++..
T Consensus 90 ~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence 1256999887432 34678888999999998774
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.21 E-value=0.003 Score=47.59 Aligned_cols=102 Identities=12% Similarity=-0.003 Sum_probs=69.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-----
Q 022810 54 LYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE----- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~----- 126 (291)
.+++..+++++.+||=+|||. |..+..+++......|+++|.+++.++.+++ .|.+ .++...-.+ ..
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT--DCLNPRELDKPVQDVIT 92 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC--cccCCccchhhhhhhHh
Confidence 445567788999999999996 8888888888733479999999997666654 4442 222211111 10
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 167 (291)
....+|+|+-.- .....+....+.++|| |.+++.-
T Consensus 93 ~~~~~G~d~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 93 ELTAGGVDYSLDCA------GTAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHHTSCBSEEEESS------CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred hhhcCCCcEEEEec------ccchHHHHHHHHhhcCCeEEEecC
Confidence 125688887642 2356788999999996 9987753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.18 E-value=0.00022 Score=53.30 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
++.+|+=||+| .|..+...+... +++|+.+|.+++.++..+..... ++.....+-..+... ...|+|+..-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence 56799999999 477788888777 89999999999988776655432 456555554443322 578999987654
Q ss_pred cccccHHHHHHHHHhccccCeeEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
..-+-+.-+-+++.+.+|||.+++
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred CCcccCeeecHHHHhhcCCCcEEE
Confidence 333334445567888999999753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.0006 Score=51.21 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=66.6
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-ccC-CCcc
Q 022810 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EME-ASYD 132 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~~~-~~~D 132 (291)
++..+++++.+||=+||| .|.++..+++.. +++++++|.+++..+.++ +.|.+ .++...-... ... +.+|
T Consensus 23 l~~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~----~lGad--~~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 23 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAK----ALGAD--EVVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHH----HHTCS--EEEETTCHHHHHTTTTCEE
T ss_pred HHHhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHh----ccCCc--EEEECchhhHHHHhcCCCc
Confidence 456788999999999998 477888888876 889999999998766554 34542 2222111111 111 5799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++-.-.- ...+....+.|+|+|++++.
T Consensus 96 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 96 FILNTVAA------PHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEEECCSS------CCCHHHHHTTEEEEEEEEEC
T ss_pred eeeeeeec------chhHHHHHHHHhcCCEEEEe
Confidence 88764322 22356677899999998874
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.05 E-value=0.0022 Score=47.66 Aligned_cols=98 Identities=10% Similarity=0.108 Sum_probs=62.8
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc---c--C
Q 022810 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE---M--E 128 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~---~--~ 128 (291)
+.....+++.+||=.|||. |..+..+++.. +.+|+++|.+++.++.+++ .|.+ .+.....+ .. . .
T Consensus 20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhccccc
Confidence 3456788999999999985 55666666665 7899999999997776654 4442 11111111 11 0 1
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+|.++.... ....+....+.|+|+|.+++..
T Consensus 92 ~~~~~~v~~~~------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 92 GGVHAAVVTAV------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEeecC------CHHHHHHHHHHhccCCceEecc
Confidence 23444443322 1467888999999999988753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.97 E-value=0.00097 Score=53.26 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 108 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~ 108 (291)
..++..+++... .+|..|||.-||+|+.+.+..+. +-+.+|+|++++.++.|++++.
T Consensus 199 ~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence 345666666554 67889999999999999988877 8899999999999999998864
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.91 E-value=0.086 Score=43.87 Aligned_cols=109 Identities=9% Similarity=0.019 Sum_probs=68.3
Q ss_pred CCEEEEEcCCcchHHHHHHH--------H--------CCCCEEEEEcCCHHHHHHHHHHHHHhCC-C-C--eEEEEcccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQ--------K--------YSNCKITGICNSKTQKEFIEEQCRVLEL-Q-N--VEIIVADIS 123 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~--------~--------~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~-~--i~~~~~d~~ 123 (291)
..+|.|+||.+|..+..+.+ + -|..+|..-|+-.+-....-+.+....- . + +.-+.+.+-
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 35799999999988743221 1 1345778888655433333222211111 1 1 333445555
Q ss_pred CCccC-CCccEEEEccccccccc---------------------------------HHHHHHHHHhccccCeeEEEEeec
Q 022810 124 TFEME-ASYDRIYSIEMFEHMKN---------------------------------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 124 ~~~~~-~~~D~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.-.+| ++.++++|..++||+.. ...+|+.=.+-|+|||.+++..++
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 54445 89999999999988731 234666666778999999999888
Q ss_pred cCC
Q 022810 170 HKT 172 (291)
Q Consensus 170 ~~~ 172 (291)
.+.
T Consensus 212 r~~ 214 (359)
T d1m6ex_ 212 RRS 214 (359)
T ss_dssp CSS
T ss_pred cCC
Confidence 754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.78 E-value=0.0029 Score=47.27 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=67.3
Q ss_pred HHHHcCCCCCCEEEEEcC-C-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------
Q 022810 55 YCERSRLEDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------ 126 (291)
.+++.+++++.+||=+|| | .|..+..+++.....+|+++|.+++.++.+++ .|.+ .++..+-.+..
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRI 92 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc--eeeccCCcCHHHHHHHH
Confidence 346678889999999997 3 55666766666534799999999987776654 3442 22332222211
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+..+|+|+.... ....++.+.+.++|||++++.
T Consensus 93 ~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 93 TESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp TTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEEC
T ss_pred hhcccchhhhcccc------cchHHHhhhhhcccCCEEEEe
Confidence 1256898887532 245677788999999998775
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.72 E-value=0.0079 Score=49.36 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=54.5
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEE-EEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v-~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~ 141 (291)
++|||+-||.|.+...+.+. |.++ .++|+++.+.+..+.|. .-.++.+|+.++... ...|+++..++-+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC------CSEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC------CCCCccCChhhCCHhHcccccEEeeccccc
Confidence 47999999999999888877 6664 59999999777666553 235678999987654 6789999877654
Q ss_pred cc
Q 022810 142 HM 143 (291)
Q Consensus 142 ~~ 143 (291)
.+
T Consensus 73 ~f 74 (324)
T d1dcta_ 73 SW 74 (324)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.66 E-value=0.0025 Score=51.44 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
..++..++... ..+|..|||.-||+|..+.+..+. +.+.+|+|+++..++.|++++...
T Consensus 194 ~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 194 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hhHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45566666655 357899999999999999999888 889999999999999999998764
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.64 E-value=0.00097 Score=50.21 Aligned_cols=94 Identities=11% Similarity=0.149 Sum_probs=64.3
Q ss_pred HHHcCCCCCCEEEEEcC-C-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCC
Q 022810 56 CERSRLEDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEA 129 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~~ 129 (291)
+...+++++.+||=.|. | .|..+..+++.. +++|++++.+++..+.++ +.|.+.+ + |..+.. ...
T Consensus 20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~----~lGa~~~-i---~~~~~~~~~~~~~ 90 (171)
T d1iz0a2 20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPL----ALGAEEA-A---TYAEVPERAKAWG 90 (171)
T ss_dssp HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHH----HTTCSEE-E---EGGGHHHHHHHTT
T ss_pred HHHhCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccc----cccccee-e---ehhhhhhhhhccc
Confidence 45677889999999884 4 477888888886 899999999888766554 3455322 1 222211 126
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+-.. . ..+....+.|+|+|+++..
T Consensus 91 g~D~v~d~~-----G---~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 91 GLDLVLEVR-----G---KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp SEEEEEECS-----C---TTHHHHHTTEEEEEEEEEC
T ss_pred ccccccccc-----c---hhHHHHHHHHhcCCcEEEE
Confidence 799887631 1 1256778899999998763
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.57 E-value=0.0013 Score=54.30 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
.+++.++... ..+|..|||.-||+|+.+.+..+. +.+.+|+|++++.++.|++++.+
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHh
Confidence 4566666654 457899999999999999998877 89999999999999999877644
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.56 E-value=0.016 Score=43.40 Aligned_cols=103 Identities=13% Similarity=0.039 Sum_probs=63.0
Q ss_pred HHHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-------
Q 022810 54 LYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF------- 125 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~------- 125 (291)
.+.+...++++.+||=+|||. |..+..+++.....+|+++|.+++.++.|++. |.+ ..+-..|-...
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~-~~in~~~~~~~~~~~~~~ 94 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT-ECISPKDSTKPISEVLSE 94 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS-EEECGGGCSSCHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc-EEECccccchHHHHHHHH
Confidence 345556788999999999985 55677777776346899999999988777653 432 11111121111
Q ss_pred ccCCCccEEEEcccccccccHHHHHHH-HHhccccCeeEEEEe
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKK-ISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~-~~~~L~pgG~l~i~~ 167 (291)
.....+|+++-... . ...+.. +..+++++|++++..
T Consensus 95 ~~g~G~d~vi~~~g-----~-~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 95 MTGNNVGYTFEVIG-----H-LETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp HHTSCCCEEEECSC-----C-HHHHHHHHTTSCTTTCEEEECS
T ss_pred hccccceEEEEeCC-----c-hHHHHHHHHHhhcCCeEEEEEE
Confidence 01156887776432 2 333444 444556668887753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.50 E-value=0.0043 Score=46.41 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cCCCcc
Q 022810 60 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~~~~D 132 (291)
..+++.+||-+|+|. |..+..+++......|+++|.+++.++.+++ .+.+ .++..+-+... ....+|
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~--~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD--HVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCHHHHHHHHTTTCCEE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc--eeecCcccHHHHHHHhhCCCCce
Confidence 357899999999985 4566677766535689999999987666654 3432 23332211110 114588
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+-...- ...++...+.|+++|++++.-
T Consensus 103 ~vid~~g~------~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 103 VAMDFVGS------QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEESSCC------HHHHHHGGGGEEEEEEEEECC
T ss_pred EEEEecCc------chHHHHHHHHHhCCCEEEEEe
Confidence 88765332 456888899999999988743
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.42 E-value=0.023 Score=42.35 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=63.5
Q ss_pred HHHHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------
Q 022810 54 LYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------ 126 (291)
.+++...++++.+||=+|||. |..+..+++.....+|+++|.+++.++.+++ .|.+ .++...-.+..
T Consensus 18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~--~~i~~~~~d~~~~~~~~ 91 (174)
T d1p0fa2 18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT--ECLNPKDYDKPIYEVIC 91 (174)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc--EEEcCCCchhHHHHHHH
Confidence 445566789999999999985 4566667766534689999999998777754 4442 22221111110
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEee
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHF 168 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~ 168 (291)
....+|+|+-.-. . ...+......+ +++|.+++.-.
T Consensus 92 ~~~~~G~d~vid~~g-----~-~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 92 EKTNGGVDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp HHTTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HhcCCCCcEEEEcCC-----C-chHHHHHHHHHHHhcCceEEEEE
Confidence 1145888876432 2 34555555555 55688877543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.29 E-value=0.011 Score=43.88 Aligned_cols=89 Identities=22% Similarity=0.267 Sum_probs=58.0
Q ss_pred EEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022810 66 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 143 (291)
+|+=||||. |.++..|.+..+..+|+++|.+++.++.+++ .+. +.....+..... ....|+|+..-+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~----~~~--~~~~~~~~~~~~-~~~~dlIila~p~--- 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGI--IDEGTTSIAKVE-DFSPDFVMLSSPV--- 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTS--CSEEESCGGGGG-GTCCSEEEECSCH---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH----hhc--chhhhhhhhhhh-ccccccccccCCc---
Confidence 588899984 4466667666555799999999997776654 332 222222322211 1457999887654
Q ss_pred ccHHHHHHHHHhccccCeeEE
Q 022810 144 KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.....++..+...++++..+.
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 345678888889888876543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.26 E-value=0.042 Score=40.67 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=66.0
Q ss_pred HHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCC------
Q 022810 54 LYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTF------ 125 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~------ 125 (291)
.+.+..+++++.+||=.||| .|.++..+++......|+++|.+++.++.+++ .|.+. ++.. +-.+.
T Consensus 19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~~--~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATE--CINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCcE--EEeCCchhhHHHHHHH
Confidence 34455678999999999997 45567777776634689999999987766654 45421 2211 11111
Q ss_pred -ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 126 -EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 126 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+..+|+|+-.-. ....++.+...+++||.+++.
T Consensus 93 ~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 93 EMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred HHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEE
Confidence 01256898887532 246778888999999876654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.21 E-value=0.0034 Score=47.32 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=66.2
Q ss_pred HHHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-c--cC
Q 022810 54 LYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E--ME 128 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~--~~ 128 (291)
.+.+.-..+++.+||=-|+ |.|..++.+++.. +++|+++..+++..+.+++ .|.+.+--...+..+. . .+
T Consensus 22 ~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~----lGa~~vi~~~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 22 RLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDK 96 (176)
T ss_dssp HHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEEEECC---------CCS
T ss_pred HHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHh----cccceeeecchhHHHHHHHhhc
Confidence 3444456677889999985 4678899999887 9999999988887666653 4543211111111111 1 12
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+.+|+|+-.-. ...+....++|+|||+++....
T Consensus 97 ~gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 97 QRWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp CCEEEEEECST-------TTTHHHHHHTEEEEEEEEECSC
T ss_pred cCcCEEEEcCC-------chhHHHHHHHhCCCceEEEeec
Confidence 67998776422 2347888899999999887543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0034 Score=47.22 Aligned_cols=97 Identities=8% Similarity=0.049 Sum_probs=65.4
Q ss_pred HHHcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------
Q 022810 56 CERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------- 126 (291)
.+...++++.+||=.|+| .|..+..+++.. +++|++++.+++..+.+++ .|.+ .++...-.++.
T Consensus 21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----lGa~--~vi~~~~~d~~~~v~~~t 93 (179)
T d1qora2 21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW--QVINYREEDLVERLKEIT 93 (179)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----cCCe--EEEECCCCCHHHHHHHHh
Confidence 344567899999999666 567888888876 8999999999997776653 4543 22221112211
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
....+|+|+....- ..+......|+|+|.+++.
T Consensus 94 ~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 94 GGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp TTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred CCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeec
Confidence 12568887764322 2467788899999987663
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.97 E-value=0.0066 Score=45.68 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=65.7
Q ss_pred HHHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022810 54 LYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----- 126 (291)
.+.+...++++.+||=.|. |.|..+..+++.. ++++++++.+++..+.++ +.|.+. ++...-.++.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~----~~Ga~~--vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVEY--VGDSRSVDFADEILE 88 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCSE--EEETTCSTHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccc----cccccc--cccCCccCHHHHHHH
Confidence 3445557789999999873 4678888888776 889999888887665554 445432 2221111211
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
....+|+|+.... ...++.+.++|+++|+++..
T Consensus 89 ~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 89 LTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 1256999987532 24567788999999998764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.96 E-value=0.021 Score=42.01 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=56.7
Q ss_pred CEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 65 HTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
++|.=||+| .+.++..+.+. +.+|++.|.+++.++.+++ .+. +.....+.+.. ...|+|+..-+.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~----~~~--~~~~~~~~~~~---~~~DiIilavp~-- 67 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE----RQL--VDEAGQDLSLL---QTAKIIFLCTPI-- 67 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTS--CSEEESCGGGG---TTCSEEEECSCH--
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHH----hhc--cceeeeecccc---cccccccccCcH--
Confidence 467889998 34566667665 8899999999987665543 332 21222222222 568999875543
Q ss_pred cccHHHHHHHHHhccccCeeEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.....+++++...|+++.+++
T Consensus 68 -~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 68 -QLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp -HHHHHHHHHHGGGSCTTCEEE
T ss_pred -hhhhhhhhhhhhhccccccee
Confidence 345678889988888887654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.89 E-value=0.029 Score=42.01 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=67.1
Q ss_pred HHHHHcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----
Q 022810 54 LYCERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----- 126 (291)
.+.+..+++++.+||-.|++ .|..+..+++.. +++|+++..+++..+.++ ..|.+. ++.-+-++..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~----~~Ga~~--vi~~~~~~~~~~~~~ 92 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFDA--AFNYKTVNSLEEALK 92 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSE--EEETTSCSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHH----hhhhhh--hcccccccHHHHHHH
Confidence 34456678899999988885 467788888887 899999999988655544 345422 2222212211
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+..+|+|+-.- . .+.++...++|+|+|.+++.
T Consensus 93 ~~~~~Gvd~v~D~v-----G--~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 93 KASPDGYDCYFDNV-----G--GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHCTTCEEEEEESS-----C--HHHHHHHGGGEEEEEEEEEC
T ss_pred HhhcCCCceeEEec-----C--chhhhhhhhhccCCCeEEee
Confidence 115688877632 1 35788999999999998774
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.87 E-value=0.0047 Score=46.54 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEE----------EccccCC------
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII----------VADISTF------ 125 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~----------~~d~~~~------ 125 (291)
++.+||=||+|. |..+...+... |++|+++|.++..++..++.. ...+.+. .+.+...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~----~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLG----GKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTT----CEECCC-----------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhh----cceEEEeccccccccccccchhhcCHHHHH
Confidence 567999999995 66777777776 999999999999766665432 1111110 0011000
Q ss_pred ------ccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022810 126 ------EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 126 ------~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
... ...|+|+....+..-+-+.-+-+++.+.+|||.+++
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 000 468999987655443333445567889999999753
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.83 E-value=0.062 Score=43.66 Aligned_cols=105 Identities=7% Similarity=-0.015 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc--------C-CC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM--------E-AS 130 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~~~--------~-~~ 130 (291)
....|+.||||.=.-...+. ..++.+++=||. +..++.-++.+.+.+. .+...+..|+.+.-. . ..
T Consensus 89 g~~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 89 GIRQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TCCEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 34567789998766554442 234678888886 8888877777777654 246778888875211 1 23
Q ss_pred ccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.-++++-+++.++ +...++++.+.+...||+.+++....
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 4567777788888 45778999999999999999886543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.76 E-value=0.065 Score=39.67 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=63.6
Q ss_pred HHHHHcCCCCCCEEEEEcCCcc-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------
Q 022810 54 LYCERSRLEDGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------ 126 (291)
.+.+...++++.+||=+|+|.+ ..+..+++.....+|+++|.+++..+.+++ .+.+ -.+...+..+..
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~-~~i~~~~~~~~~~~~~~~ 93 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT-ECVNPQDYKKPIQEVLTE 93 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS-EEECGGGCSSCHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe-eEEecCCchhHHHHHHHH
Confidence 3455567899999999999754 456666666645799999999997776654 3432 111112222211
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
.++.+|+|+-.... ...++.....++++ |.+++.
T Consensus 94 ~~~~G~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 94 MSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp HTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred HhcCCCCEEEecCCc------hhHHHHHHHHHhcCCcceEEe
Confidence 11568988875433 35566667777776 555543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.71 E-value=0.04 Score=46.27 Aligned_cols=87 Identities=8% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-------CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-------SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
..+.+.++.++..+|+|+|+|.|.++..+.... ...+++.+|.|+...+.-++... ...++.++ .++.+.
T Consensus 69 ~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~~~i~w~-~~~~~~ 145 (365)
T d1zkda1 69 ASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GIRNIHWH-DSFEDV 145 (365)
T ss_dssp HHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TCSSEEEE-SSGGGS
T ss_pred HHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--ccccceec-cChhhc
Confidence 333445566667789999999999988776542 23579999999986555444432 22356553 444443
Q ss_pred ccCCCccEEEEcccccccc
Q 022810 126 EMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~ 144 (291)
+ ...-+|+++..+..+|
T Consensus 146 ~--~~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 146 P--EGPAVILANEYFDVLP 162 (365)
T ss_dssp C--CSSEEEEEESSGGGSC
T ss_pred c--cCCeEEEecccCcccc
Confidence 3 2235777777665553
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.65 E-value=0.016 Score=47.75 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~ 139 (291)
.+.+|||+-||.|.++..|.+. |.+ +.++|+++.+++..+.|... ..++|+.++... ..+|+++...+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~-------~~~~Di~~~~~~~~~~~Dll~ggpP 80 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGE-------KPEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSC-------CCBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCC-------CCcCchhcCchhhcceeeeeecccc
Confidence 5789999999999999998766 665 56799999998888777632 125788776544 57899998775
Q ss_pred cc
Q 022810 140 FE 141 (291)
Q Consensus 140 l~ 141 (291)
-+
T Consensus 81 Cq 82 (327)
T d2c7pa1 81 CQ 82 (327)
T ss_dssp CT
T ss_pred cc
Confidence 43
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.1 Score=41.22 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc----------cC
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE----------ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~----------~~ 128 (291)
+++.+|=.|++.|. .+..|++. |.+|+.++.+++.++.+.+.++..+. .++.++.+|+.+.. ..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 47789999988663 44455554 89999999999999888888877765 36888899998742 11
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
+..|++|.+...
T Consensus 87 ~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 87 HSGVDICINNAGL 99 (257)
T ss_dssp HCCCSEEEECCCC
T ss_pred cCCCCEEEecccc
Confidence 579999887644
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.17 E-value=0.016 Score=42.98 Aligned_cols=99 Identities=12% Similarity=0.184 Sum_probs=63.3
Q ss_pred HHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--Cc--cC
Q 022810 55 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FE--ME 128 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~--~~--~~ 128 (291)
+.+.-..+++.+||=-|+ |.|..+..+++.. +++|+++.-+++..+.++ +.|.+.+ +...|... .. .+
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~----~lGad~v-i~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLK----QLGASEV-ISREDVYDGTLKALSK 88 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHH----HHTCSEE-EEHHHHCSSCCCSSCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHH----hhcccce-EeccchhchhhhcccC
Confidence 333333445667887774 4678899999887 899999999887665554 4455322 22222211 11 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.+|+|+-.- . ...+.+..+.|+|+|++++.
T Consensus 89 ~gvd~vid~v-----g--g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 89 QQWQGAVDPV-----G--GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CCEEEEEESC-----C--THHHHHHHTTEEEEEEEEEC
T ss_pred CCceEEEecC-----c--HHHHHHHHHHhccCceEEEe
Confidence 5688876542 1 34678899999999998774
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.70 E-value=0.15 Score=35.67 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=53.8
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~~ 137 (291)
++|+=+|+ |..+..+++.+ .+..|+.+|.+++.++.+.+. . .+.++.+|..+... . ...|.+++.
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h---hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 46777776 55555555432 278999999999987665432 1 46788999887431 2 678888874
Q ss_pred ccccccccHHHHHHHHHhccccCee
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~ 162 (291)
..- +....+.....+.+.+.-+
T Consensus 73 t~~---d~~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 73 TGK---EEVNLMSSLLAKSYGINKT 94 (132)
T ss_dssp CSC---HHHHHHHHHHHHHTTCCCE
T ss_pred CCc---HHHHHHHHHHHHHcCCceE
Confidence 322 1222344445566777644
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.022 Score=46.93 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCC--E-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNC--K-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~D~v~~ 136 (291)
+.+|+|+.||.|.+...+.+. |. + +.++|+++.+++..+.+. +...++++|+.++... ..+|+++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a--G~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES--CIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHc--CCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence 568999999999998888766 43 3 668999999877766553 2455677888876533 36899998
Q ss_pred ccccccc
Q 022810 137 IEMFEHM 143 (291)
Q Consensus 137 ~~~l~~~ 143 (291)
..+-..+
T Consensus 75 gpPCq~f 81 (343)
T d1g55a_ 75 SPPCQPF 81 (343)
T ss_dssp CCC----
T ss_pred ecccccc
Confidence 7765444
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.67 E-value=0.1 Score=39.05 Aligned_cols=104 Identities=10% Similarity=0.075 Sum_probs=63.7
Q ss_pred HHHHcCCCCCCEEEEEcC--C-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEE-EEccccCCc----
Q 022810 55 YCERSRLEDGHTVLDVGC--G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI-IVADISTFE---- 126 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGc--G-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~-~~~d~~~~~---- 126 (291)
+.+...++++.+||=+.+ | .|..+..+++.. +++|+++--++...+...+.+++.|.+.+-. ...|..+..
T Consensus 20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~ 98 (189)
T d1gu7a2 20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIK 98 (189)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHH
Confidence 334457788888888732 2 467788888876 8898887655555555566667777643211 111222211
Q ss_pred -----cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 -----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 -----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
....+|+|+-. +. ...+..+.+.|+|+|+++..
T Consensus 99 ~~~~~~g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 99 EWIKQSGGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHTCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHhhccCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEE
Confidence 11457887743 21 33457778999999998763
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.17 Score=40.20 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~---p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
|++|-=|-.|++.++..+++.+ .+.+|+.++.+++..+.+.+.++..+. ++.++.+|+.+... . +
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 5677555445555554444332 278999999999999888888877765 78899999987531 1 6
Q ss_pred CccEEEEccccccc---c-----c-----------HHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHM---K-----N-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~---~-----~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.|++|.+.-+... . + ...+.+.+...|+++|.++..
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 89999998754322 0 1 223566667788888986654
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=94.07 E-value=0.076 Score=44.91 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=44.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHHhCC
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLEL 112 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p--~~~v~~vD~s~~~~~~a~~~~~~~~~ 112 (291)
+.++..++|+|+-.|..+..+++..+ ..+|+++|+++...+..+++++.+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 45778999999999999888876543 35899999999999999999887654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.27 Score=38.36 Aligned_cols=76 Identities=24% Similarity=0.198 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.|+.+|=-|++.|. ++..+++. |.+|+.+|.+++.++...+.+...+. ++..+.+|+.+... .
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57788888888763 56666666 89999999999999888888877664 78899999987531 1
Q ss_pred CCccEEEEccccc
Q 022810 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~v~~~~~l~ 141 (291)
+..|+++.+..+.
T Consensus 83 g~idilinnag~~ 95 (244)
T d1yb1a_ 83 GDVSILVNNAGVV 95 (244)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCceeEeecccc
Confidence 5789998877553
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.086 Score=39.24 Aligned_cols=91 Identities=12% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cCCCccEEEE
Q 022810 62 EDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~~~~D~v~~ 136 (291)
+++.+||=.|. |.|..++.+++.. |++|+++.-+++..+.+++ .|.+ .++.-+-.+.. ....+|.|+
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~----lGad--~vi~~~~~~~~~~l~~~~~~~vv- 101 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKS----LGAS--RVLPRDEFAESRPLEKQVWAGAI- 101 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTEE--EEEEGGGSSSCCSSCCCCEEEEE-
T ss_pred CCCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHh----hccc--cccccccHHHHHHHHhhcCCeeE-
Confidence 34457876654 3677888899887 9999999999987665543 4432 22222211111 114577764
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+. ...+....+.|+++|+++..
T Consensus 102 D~Vg------g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 102 DTVG------DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp ESSC------HHHHHHHHHTEEEEEEEEEC
T ss_pred EEcc------hHHHHHHHHHhccccceEee
Confidence 2222 34688899999999998774
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.84 E-value=0.083 Score=38.95 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=60.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------ 126 (291)
.+.+...++++.+||=+|+|.+. .+..+++...+..|+++|.+++.++.+++ .|.+ .++..+-++..
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd--~~in~~~~~~~~~~~~~ 92 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT--DFVNPNDHSEPISQVLS 92 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCCc--EEEcCCCcchhHHHHHH
Confidence 34455678999999999999744 55555656546689999999997766654 4542 22222111111
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
....+|+|+-.-. ....+......+++||..++
T Consensus 93 ~~~~~G~d~vid~~G------~~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 93 KMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEE
T ss_pred hhccCCcceeeeecC------CHHHHHHHHHHhhCCCccee
Confidence 1145888876432 24456666666666544333
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.33 E-value=0.087 Score=36.82 Aligned_cols=87 Identities=7% Similarity=0.064 Sum_probs=58.2
Q ss_pred CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEcccccccccH
Q 022810 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSIEMFEHMKNY 146 (291)
Q Consensus 72 cG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~~~l~~~~~~ 146 (291)
||.|..+..+++...+..++.+|.++...+.++ .. .+.++.+|..+.. .. ...+.+++...- ...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~----~~---~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~---d~~ 75 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL----RS---GANFVHGDPTRVSDLEKANVRGARAVIVNLES---DSE 75 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH----HT---TCEEEESCTTSHHHHHHTTCTTCSEEEECCSS---HHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH----hc---CccccccccCCHHHHHHhhhhcCcEEEEeccc---hhh
Confidence 677889999998876778999999998765443 22 5788999987743 12 567877774321 112
Q ss_pred HHHHHHHHhccccCeeEEEEee
Q 022810 147 QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 147 ~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
...+....+.+.|...++....
T Consensus 76 n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 76 TIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHHHHHHHHCSSSCEEEECS
T ss_pred hHHHHHHHHHHCCCceEEEEEc
Confidence 2334445566788887776543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.08 E-value=0.069 Score=40.08 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=61.2
Q ss_pred HHHHcCCCCC--CEEEEEc--CCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----
Q 022810 55 YCERSRLEDG--HTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 126 (291)
Q Consensus 55 ~~~~~~~~~~--~~vLDiG--cG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---- 126 (291)
+.+...++++ .+||=.| .|.|..+..+++......|+++..+++.... ..+..+.+ .++...-+++.
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~---l~~~~gad--~vi~~~~~~~~~~~~ 94 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLF---LTSELGFD--AAVNYKTGNVAEQLR 94 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHH---HHHHSCCS--EEEETTSSCHHHHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhh---hhhcccce--EEeeccchhHHHHHH
Confidence 3445556665 7899877 4688999999998733467777777664322 22334442 22222211111
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 --~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.++.+|+|+-.- . ...+....+.|+|+|+++..
T Consensus 95 ~~~~~GvDvv~D~v-----G--g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 95 EACPGGVDVYFDNV-----G--GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHCTTCEEEEEESS-----C--HHHHHHHHTTEEEEEEEEEC
T ss_pred HHhccCceEEEecC-----C--chhHHHHhhhccccccEEEe
Confidence 124689887532 1 35678899999999998763
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.3 Score=38.30 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~----------~ 128 (291)
.|+.+|=-|++.|. .+..+++. |++|+.+|.+++.++.+.+.+.+... .++.++.+|+.+... .
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 46788888876553 34444544 89999999999988777666544322 368889999987431 1
Q ss_pred -CCccEEEEccccccccc
Q 022810 129 -ASYDRIYSIEMFEHMKN 145 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~ 145 (291)
++.|+++.+.......+
T Consensus 80 ~G~iDilVnnAg~~~~~~ 97 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKN 97 (254)
T ss_dssp HSCCCEEEECCCCCCSSS
T ss_pred cCCcCeeccccccccccc
Confidence 57999998876654433
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.60 E-value=0.65 Score=36.54 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC-HHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s-~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~ 128 (291)
+|+++|=-|++.|. .+..|++. |++|+.++.+ ++.++.+.+.+++.+. ++.++.+|+.+.. ..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 47788888887663 45555555 8999999876 5566666666666665 7888999988742 11
Q ss_pred -CCccEEEEcccccccc--------c-----------HHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEHMK--------N-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~--------~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|+++.+....... + .-.+.+.+...|+.+|..++.
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 6789998876443221 1 233556666777777765554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.56 E-value=0.71 Score=35.96 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-HHhCCCCeEEEEccccCCc----------cC
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQC-RVLELQNVEIIVADISTFE----------ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~-~~~~~~~i~~~~~d~~~~~----------~~ 128 (291)
+++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.. ...+. ++.++.+|+.+.. ..
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47788988887663 45555555 899999999988877665554 33444 6888899987742 11
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
++.|+++.+..+
T Consensus 81 ~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 81 FGKLDTVVNAAGI 93 (251)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 579999987643
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.54 E-value=0.43 Score=37.42 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCcc---hHHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC
Q 022810 63 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G---~~~~~l~~~~p~~~v~~v-D~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~ 128 (291)
.|+++|=.|++.| ..+..|++. |++|+.. ..++...+.+.+.+.+.+. ++..+.+|+.+.. ..
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHH
Confidence 5788887776544 344555555 7888764 6777777888888877776 7889999997632 11
Q ss_pred -CCccEEEEccccccccc-------------------HHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEHMKN-------------------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|+++.+....+..+ .-.+.+.+...|+.+|..++.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 57899988775433311 233556666667777765554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.90 E-value=0.43 Score=34.84 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=56.0
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEc--cccCCccC--CCccEEEEc
Q 022810 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVA--DISTFEME--ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-~~~i~~~~~--d~~~~~~~--~~~D~v~~~ 137 (291)
++|.=||+|.-. ++..|++. |.+|+++|.+++.++.+++.-.... .+....... .......+ ...|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 578889998543 44445554 8899999999987766543211000 001111111 11111111 568998875
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEE
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
-.- .....+++++...|+++..+++
T Consensus 80 v~~---~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 VPA---IHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp SCG---GGHHHHHHHHGGGCCTTCEEEE
T ss_pred Ech---hHHHHHHHHhhhccCCCCEEEE
Confidence 432 3467889999999999886543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.43 E-value=0.2 Score=37.49 Aligned_cols=75 Identities=5% Similarity=0.011 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEE
Q 022810 62 EDGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~D~v 134 (291)
-++++||=.|++.|. .+..+++. +.+|+.++.+++.++.+.+...... ++.+...|..+.. .. +..|++
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~iDil 96 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVKGAHFV 96 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHhcCcCee
Confidence 368899999976552 45555655 8999999999988887777665542 3445566665432 11 678999
Q ss_pred EEcccc
Q 022810 135 YSIEMF 140 (291)
Q Consensus 135 ~~~~~l 140 (291)
+.+...
T Consensus 97 in~Ag~ 102 (191)
T d1luaa1 97 FTAGAI 102 (191)
T ss_dssp EECCCT
T ss_pred eecCcc
Confidence 987643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.85 E-value=0.21 Score=34.84 Aligned_cols=87 Identities=7% Similarity=0.043 Sum_probs=48.9
Q ss_pred EEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEccc
Q 022810 67 VLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIEM 139 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~~~~ 139 (291)
++=+|+ |.++..+++.+ .+.+|+.+|.+++.++.++ .. ....+.+|..+... . ...|.|++...
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----~~---~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY---ATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----TT---CSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----Hh---CCcceeeecccchhhhccCCccccEEEEEcC
Confidence 444555 45555554432 2789999999999766543 22 24567789877532 1 46787766432
Q ss_pred ccccccHHHHHHHHHhccccCeeEEE
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
- .+....+-.+.+.+.|...++.
T Consensus 74 ~---~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 74 A---NIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp S---CHHHHHHHHHHHHHTTCSEEEE
T ss_pred c---hHHhHHHHHHHHHHcCCCcEEe
Confidence 1 1122333334444456666554
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.79 E-value=0.56 Score=36.75 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------------~ 127 (291)
+++++|=.|+..|. .+..+++. |.+|+.++.++..++.+.+.....+. ++.++.+|+.+.. .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57899999987652 44555555 89999999999998888888877765 6888899987743 1
Q ss_pred CCCccEEEEcccc
Q 022810 128 EASYDRIYSIEMF 140 (291)
Q Consensus 128 ~~~~D~v~~~~~l 140 (291)
.+..|+++.+...
T Consensus 82 ~g~idilinnag~ 94 (258)
T d1ae1a_ 82 DGKLNILVNNAGV 94 (258)
T ss_dssp TSCCCEEEECCCC
T ss_pred CCCcEEEeccccc
Confidence 1467888876544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.62 E-value=0.5 Score=37.05 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~- 128 (291)
.|+++|=-|.+.|. .+..|++. |++|+.+|.+++.++.+.+.+...+. ++..+.+|+.+.. ..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57888888877653 45555655 89999999999999888888877665 7888999987642 11
Q ss_pred CCccEEEEccc
Q 022810 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~v~~~~~ 139 (291)
+..|+++.+..
T Consensus 81 g~iDilVnnaG 91 (260)
T d1zema1 81 GKIDFLFNNAG 91 (260)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCeehhhhc
Confidence 57999987653
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.03 E-value=3.2 Score=33.50 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---------------------CCCCeEEEEc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---------------------ELQNVEIIVA 120 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~---------------------~~~~i~~~~~ 120 (291)
.+...|+-||||.=.....+....++.+++=||. ++.++.=++.+++. .-++...+.+
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~ 173 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 173 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence 3556899999999888877877766667777776 44443322332221 0135678888
Q ss_pred cccCCcc---------C-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 121 DISTFEM---------E-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 121 d~~~~~~---------~-~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+.+... . ...-++++-.++.++ +...++++.+.+... +|.+++-.+-
T Consensus 174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i 233 (328)
T d1rjda_ 174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPI 233 (328)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccC
Confidence 8877421 1 334578888899998 456678888877664 5555554443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=89.79 E-value=1.1 Score=34.81 Aligned_cols=76 Identities=16% Similarity=0.055 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCC-HHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s-~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
+|+.+|=-|++.|. .+..|++. |++|+.++.+ +..++.+.+......-.++.++.+|+.+... .
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 47778877776553 44455555 8999999986 5556655555443322378899999987421 1
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
++.|+++.+.-.
T Consensus 81 ~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 81 MGRIDILVNNAGI 93 (260)
T ss_dssp HSCCSEEEECCCC
T ss_pred hCCCcEEEeeccc
Confidence 579999987643
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.72 E-value=0.53 Score=33.48 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=54.2
Q ss_pred EEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEcc
Q 022810 66 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIE 138 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~~~ 138 (291)
+|+=+|+| ..+..+++.. .+..++.+|.+++......+.... .++.++.+|..+... . +..|.|++..
T Consensus 5 HiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~---~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc---CCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 46666664 5555554431 278899999988654333333222 257899999887431 1 6788888753
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.- +.....+....+.+.|...++...
T Consensus 80 ~~---d~~n~~~~~~~r~~~~~~~iia~~ 105 (153)
T d1id1a_ 80 DN---DADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp SC---HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred cc---HHHHHHHHHHHHHhCCCCceEEEE
Confidence 21 112223333455567887776654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.55 E-value=0.31 Score=30.63 Aligned_cols=48 Identities=13% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~ 105 (291)
+....+++.+||=.|. |.|..++.+++.. +++|+++.-|++..+.+++
T Consensus 25 ~~~~~~~~~~vlI~gasGgVG~~aiQlak~~-G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 25 DAGVRPQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp HTTCCGGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH
T ss_pred hhhhccCCCcEEEEeCCCcHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHH
Confidence 3344567888988776 4567888888887 8999999999988877764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.21 E-value=0.8 Score=35.79 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------c--
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------M-- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~-- 127 (291)
+|+++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+.. .
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57888988877653 45555555 89999999999999888888777664 7888899987632 1
Q ss_pred CCCccEEEEcccc
Q 022810 128 EASYDRIYSIEMF 140 (291)
Q Consensus 128 ~~~~D~v~~~~~l 140 (291)
..+.|+++.+.-.
T Consensus 84 ~~~idilvnnAG~ 96 (259)
T d2ae2a_ 84 HGKLNILVNNAGI 96 (259)
T ss_dssp TTCCCEEEECCCC
T ss_pred CCCceEEEECCce
Confidence 1368999987643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.55 E-value=1.1 Score=34.90 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=53.5
Q ss_pred CCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 64 GHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 64 ~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
|+.+|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+... . +
T Consensus 2 gKValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4555666765543 34445554 89999999999999888888877765 78899999987431 1 6
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|+++.+...
T Consensus 79 ~iDilVnnAG~ 89 (257)
T d2rhca1 79 PVDVLVNNAGR 89 (257)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEecccc
Confidence 78999987533
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.37 E-value=0.74 Score=35.94 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~-~ 129 (291)
.|+++|=-|++.| ++..+++.+ .|++|+.+|.+++.++.+.+.+++.+. ++.++.+|+.+.. .. +
T Consensus 10 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4778887666544 444444332 389999999999998888888877665 7888999998742 11 6
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+++.+...
T Consensus 88 ~iDilvnnAG~ 98 (255)
T d1fmca_ 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEeeeCCcC
Confidence 79999887643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.11 E-value=0.82 Score=36.06 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc----------
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~---------- 127 (291)
+|+++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+.+.+. .++..+.+|+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 47788888877663 44555555 89999999999998888888877765 368899999887431
Q ss_pred C-CCccEEEEcc
Q 022810 128 E-ASYDRIYSIE 138 (291)
Q Consensus 128 ~-~~~D~v~~~~ 138 (291)
. ++.|+++.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 1 5789999875
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.09 E-value=0.74 Score=35.84 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~-~ 129 (291)
+++.+|=-|++.| ++..+++.+ .|++|+.+|.+++.++.+.+.++..+. ++.++.+|+.+.. .. +
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4677787787655 555444432 378999999999998888888777665 7888999998742 11 6
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+++.+...
T Consensus 87 ~iDilvnnag~ 97 (251)
T d2c07a1 87 NVDILVNNAGI 97 (251)
T ss_dssp CCCEEEECCCC
T ss_pred Cceeeeecccc
Confidence 89999887644
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.03 E-value=0.87 Score=36.12 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCcc---hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------C
Q 022810 63 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G---~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 128 (291)
+|+++|=-|+..| ..+..|++. |.+|+.+|.+...++.+.+.+....-.++.++.+|+.+... .
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA 101 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence 5788999988766 345555555 89999999999887766655543322368888999876431 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 102 g~iDilvnnAg~ 113 (294)
T d1w6ua_ 102 GHPNIVINNAAG 113 (294)
T ss_dssp CSCSEEEECCCC
T ss_pred cccchhhhhhhh
Confidence 578998887643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.97 E-value=0.1 Score=41.38 Aligned_cols=53 Identities=9% Similarity=-0.039 Sum_probs=38.5
Q ss_pred EEEEccccCCc--cC-CCccEEEEcccccc-----------cccHHHHHHHHHhccccCeeEEEEee
Q 022810 116 EIIVADISTFE--ME-ASYDRIYSIEMFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 116 ~~~~~d~~~~~--~~-~~~D~v~~~~~l~~-----------~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++.+|..+.. .+ +++|+|+..+++.. +......+.++.++|+|+|.+++...
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 46677876642 23 88999999988632 22346678899999999999888543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.93 E-value=0.76 Score=36.20 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCc----------c
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFE----------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~----------~ 127 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+.+.+. .++..+.+|+.+.. .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 47788888877652 44555555 89999999999999888888877654 36889999988742 1
Q ss_pred C-CCccEEEEcc
Q 022810 128 E-ASYDRIYSIE 138 (291)
Q Consensus 128 ~-~~~D~v~~~~ 138 (291)
. +..|+++.+.
T Consensus 82 ~~g~iDilvnnA 93 (272)
T d1xkqa_ 82 QFGKIDVLVNNA 93 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCceEEEeCC
Confidence 1 5789998875
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=2.1 Score=32.87 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
+|+++|=-|++.|. .+..+++. |.+|+.+|.+++.++.+.+.. +. +...+.+|+.+... .
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~~~---~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISDYL---GA-NGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH---GG-GEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHh---CC-CCcEEEEEecCHHHhhhhhhhhhccc
Confidence 46777777776552 44445554 899999999998776655443 22 57788899876421 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
++.|+++.+...
T Consensus 77 g~iDilVnnAg~ 88 (243)
T d1q7ba_ 77 GEVDILVNNAGI 88 (243)
T ss_dssp CSCSEEEECCCC
T ss_pred CCcceehhhhhh
Confidence 579999987643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=87.53 E-value=1.4 Score=34.34 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.....+. .++..+.+|+.+... .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 46788888887663 45566665 89999999999988887777766544 368889999877421 1
Q ss_pred -CCccEEEEccc
Q 022810 129 -ASYDRIYSIEM 139 (291)
Q Consensus 129 -~~~D~v~~~~~ 139 (291)
++.|+++.+.-
T Consensus 81 ~G~iDiLVnnAG 92 (258)
T d1iy8a_ 81 FGRIDGFFNNAG 92 (258)
T ss_dssp HSCCSEEEECCC
T ss_pred hCCCCEEEECCc
Confidence 67999998753
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.46 E-value=0.15 Score=36.82 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=53.7
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
++|+=||+|. |. ++..|++. +.+|+.++.++...+.. ...+.+.......-....... ..+|+|+..---
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka- 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPDFLATSDLLLVTLKA- 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhh----ccccCCccccccccccchhhhhcccceEEEeecc-
Confidence 5789999985 44 45555554 78999999876522110 001111100000000111111 578999875443
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEe
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+....++.+...++++..++...
T Consensus 74 --~~~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 74 --WQVSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp --GGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred --cchHHHHHhhccccCcccEEeecc
Confidence 356788999999999988776643
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=87.41 E-value=0.77 Score=36.04 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~- 128 (291)
.++.+|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+... .++.++.+|+.+.. ..
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSP--DVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcCC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57889999987663 34445554 899999999998877666555332 35888899987742 11
Q ss_pred CCccEEEEccc
Q 022810 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~v~~~~~ 139 (291)
++.|+++.+..
T Consensus 81 g~iD~lVnnAG 91 (268)
T d2bgka1 81 GKLDIMFGNVG 91 (268)
T ss_dssp SCCCEEEECCC
T ss_pred CCcceeccccc
Confidence 57899997664
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.39 E-value=1 Score=35.11 Aligned_cols=75 Identities=16% Similarity=0.006 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------------~ 127 (291)
+++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+...+. ++..+.+|+.+.. .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 47888888887663 45555555 89999999999988888887776654 7889999987642 1
Q ss_pred CCCccEEEEcccc
Q 022810 128 EASYDRIYSIEMF 140 (291)
Q Consensus 128 ~~~~D~v~~~~~l 140 (291)
.+..|+++.+...
T Consensus 84 ~g~idilvnnAG~ 96 (259)
T d1xq1a_ 84 GGKLDILINNLGA 96 (259)
T ss_dssp TTCCSEEEEECCC
T ss_pred CCCcccccccccc
Confidence 1468999987644
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=87.34 E-value=4.8 Score=30.60 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.|+++|=.|++.|. .+..|++. |++|+.++.+.+.++.. .++.+ .++.++.+|+.+... .
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~---~~~~~-~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEA---VAALE-AEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHH---HHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH---HHHcC-CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57888888887653 44445554 89999999998765433 33333 368889999876421 1
Q ss_pred CCccEEEEccccccccc-------------------HHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKN-------------------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
++.|+++.+........ .-.+.+.+...++.++.+.+.
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ 134 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT 134 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeec
Confidence 57999998765433311 122445556667777765554
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.97 E-value=1.1 Score=33.52 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=27.9
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHH
Q 022810 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIE 104 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~ 104 (291)
++|.=+|+|. |. ++..++++ |.+|+|+|.+++.++..+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln 40 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLIN 40 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhc
Confidence 4678889983 43 45556655 789999999998776654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=86.87 E-value=2 Score=33.20 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
+++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+. .+. +..++.+|+.+... .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~---~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAE---LGE-RSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHH---HCT-TEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH---hCC-CeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 57788877776552 34445544 89999999999876655443 332 67788889876421 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 79 g~iDilVnnAG~ 90 (253)
T d1hxha_ 79 GTLNVLVNNAGI 90 (253)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCCeEEecccc
Confidence 578999987744
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.72 E-value=1.1 Score=35.00 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCc---------c-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFE---------M- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~---------~- 127 (291)
.++.+|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+...+. .++.++.+|+.+.. .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46677777776553 34445544 89999999999999888888777665 35899999997642 1
Q ss_pred C-CCccEEEEcc
Q 022810 128 E-ASYDRIYSIE 138 (291)
Q Consensus 128 ~-~~~D~v~~~~ 138 (291)
. ++.|+++.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 1 5789988775
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.51 E-value=1.2 Score=32.55 Aligned_cols=91 Identities=11% Similarity=0.095 Sum_probs=50.6
Q ss_pred EEEEEcCCc-chHHHHHHHHCCCCEEEEE-cCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccCCCccEEEEcccccc
Q 022810 66 TVLDVGCGW-GSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 66 ~vLDiGcG~-G~~~~~l~~~~p~~~v~~v-D~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
+|.=||||. |..-....+..++.+++++ |.+++. ++....+.+.+. .. ...|++++......|+|+...+-.
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~ll~~~~iD~v~I~tp~~- 77 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEK---AKAFATANNYPESTK-IHGSYESLLEDPEIDALYVPLPTS- 77 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHH---HHHHHHHTTCCTTCE-EESSHHHHHHCTTCCEEEECCCGG-
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccc---cccchhcccccccee-ecCcHHHhhhccccceeeecccch-
Confidence 677899994 5443334445678888875 887764 333444455432 33 346666643335689887654321
Q ss_pred cccHHHHHHHHHhccccCeeEEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.-++-+..+|+.|=-++++
T Consensus 78 -----~h~~~~~~~l~~g~~v~~E 96 (184)
T d1ydwa1 78 -----LHVEWAIKAAEKGKHILLE 96 (184)
T ss_dssp -----GHHHHHHHHHTTTCEEEEC
T ss_pred -----hhcchhhhhhhccceeecc
Confidence 1233344555555445553
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=86.49 E-value=3 Score=32.05 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC
Q 022810 62 EDGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME 128 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~ 128 (291)
-.|+++|=-|++.|. .+..|++. |++|..+|.+++..+.++ .. +..++.+|+.+.. ..
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~----~~---~~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEVAE----AI---GGAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHHHHH----HH---TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----Hc---CCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 358889988876653 34455555 899999999987554432 22 3467788987742 11
Q ss_pred -CCccEEEEccc
Q 022810 129 -ASYDRIYSIEM 139 (291)
Q Consensus 129 -~~~D~v~~~~~ 139 (291)
++.|+++.+..
T Consensus 74 ~G~iDiLVnnAG 85 (248)
T d2d1ya1 74 LGRVDVLVNNAA 85 (248)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCeEEEeCc
Confidence 67999988753
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=1 Score=34.74 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCcc---hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC-CCcc
Q 022810 63 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYD 132 (291)
Q Consensus 63 ~~~~vLDiGcG~G---~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~-~~~D 132 (291)
.|+++|=-|++.| ..+..|++. |.+|+.+|.+++.++.+.+. . +++..+++|+.+.. .. ++.|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVRE---C--PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---S--TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHh---c--CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 5889999998766 345555555 89999999998876554432 2 25778889987642 12 6899
Q ss_pred EEEEcccc
Q 022810 133 RIYSIEMF 140 (291)
Q Consensus 133 ~v~~~~~l 140 (291)
+++.+...
T Consensus 79 ilVnnAg~ 86 (244)
T d1pr9a_ 79 LLVNNAAV 86 (244)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99987644
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.08 E-value=1 Score=29.39 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=42.3
Q ss_pred CCCCEEEEEcCC-cch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcc
Q 022810 62 EDGHTVLDVGCG-WGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~ 138 (291)
....+|.=||.| +|. ++..|.++ |.+|+|.|...... . +...+.| +.+..+.-.... ...|+|+.+.
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~--~-~~L~~~G---i~v~~g~~~~~i--~~~d~vV~S~ 75 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVV--T-QRLAQAG---AKIYIGHAEEHI--EGASVVVVSS 75 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHH--H-HHHHHTT---CEEEESCCGGGG--TTCSEEEECT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChh--h-hHHHHCC---CeEEECCccccC--CCCCEEEECC
Confidence 456788888754 554 45667777 89999999764321 2 2334444 445554443322 4679988877
Q ss_pred cc
Q 022810 139 MF 140 (291)
Q Consensus 139 ~l 140 (291)
.+
T Consensus 76 AI 77 (96)
T d1p3da1 76 AI 77 (96)
T ss_dssp TS
T ss_pred Cc
Confidence 65
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.82 E-value=3.8 Score=31.29 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCCc--c---hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------
Q 022810 62 EDGHTVLDVGCGW--G---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---------- 126 (291)
Q Consensus 62 ~~~~~vLDiGcG~--G---~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---------- 126 (291)
-.++++|=-|+++ | ..+..|++. |++|+.++.+++..+.+.+.....+ +......|..+..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHhhcC--CcceeecccchHHHHHHHHHHhh
Confidence 3588999988755 4 255667666 8999999999887777766665554 3445566654421
Q ss_pred cC-CCccEEEEcc
Q 022810 127 ME-ASYDRIYSIE 138 (291)
Q Consensus 127 ~~-~~~D~v~~~~ 138 (291)
.. ...|.++.+.
T Consensus 79 ~~~~~~d~~v~~a 91 (258)
T d1qsga_ 79 KVWPKFDGFVHSI 91 (258)
T ss_dssp TTCSSEEEEEECC
T ss_pred hcccccceEEEee
Confidence 11 5678888764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=85.23 E-value=0.22 Score=40.03 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=40.8
Q ss_pred eEEEEccccCCc--c-CCCccEEEEccccccc--------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 115 VEIIVADISTFE--M-EASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 115 i~~~~~d~~~~~--~-~~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
-.++++|..+.. . ++++|+|+..++.... ......+..++++|+|+|.+++....
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 478889887632 2 2899999999886322 12456789999999999999886543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=84.78 E-value=3.2 Score=31.66 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=50.0
Q ss_pred EEEEcCCcch---HHHHHHHHCCCCE-------EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------
Q 022810 67 VLDVGCGWGS---LSLYIAQKYSNCK-------ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------- 127 (291)
Q Consensus 67 vLDiGcG~G~---~~~~l~~~~p~~~-------v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--------- 127 (291)
||=-|++.|. .+..|++. |++ |+.++.+++.++.+.+.+...+. ++.++.+|+.+...
T Consensus 4 vlITGas~GIG~aia~~la~~--G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARA--ARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHH--TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEccCCCHHHHHHHHHHHHh--CccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHH
Confidence 4555766553 44555555 554 89999999988888877776664 68889999987431
Q ss_pred C--CCccEEEEcccc
Q 022810 128 E--ASYDRIYSIEMF 140 (291)
Q Consensus 128 ~--~~~D~v~~~~~l 140 (291)
. +..|+++.+...
T Consensus 81 ~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGV 95 (240)
T ss_dssp HHTSCCSEEEECCCC
T ss_pred HHcCCcceeeccccc
Confidence 1 579999987644
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.74 E-value=1.7 Score=33.94 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
+|+++|=-|++.|. ++..|+++ |.+|+.++.+++.++.+.+.........+.....|..+... .
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 57889988888773 45555655 89999999999998888776655544467778888765321 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
+..|+++.+...
T Consensus 91 g~~~~li~nag~ 102 (269)
T d1xu9a_ 91 GGLDMLILNHIT 102 (269)
T ss_dssp TSCSEEEECCCC
T ss_pred CCcccccccccc
Confidence 568888876644
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=83.01 E-value=0.21 Score=38.82 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=36.7
Q ss_pred EEEEccccCCc--cC-CCccEEEEccccccc--------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 116 EIIVADISTFE--ME-ASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 116 ~~~~~d~~~~~--~~-~~~D~v~~~~~l~~~--------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+++++|..+.. .+ +++|+|+..++...- ......++++.++|+|||.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 36788876632 23 789999999876321 113457888999999999887643
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.77 E-value=2.4 Score=32.74 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=50.6
Q ss_pred EEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-CCcc
Q 022810 67 VLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME-ASYD 132 (291)
Q Consensus 67 vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~-~~~D 132 (291)
+|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.+.+.+. ++.++.+|+.+.. .. ++.|
T Consensus 4 alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 3556665442 34445544 89999999999999888888877765 7888999998742 11 6799
Q ss_pred EEEEccc
Q 022810 133 RIYSIEM 139 (291)
Q Consensus 133 ~v~~~~~ 139 (291)
+++.+..
T Consensus 81 ilVnnAG 87 (255)
T d1gega_ 81 VIVNNAG 87 (255)
T ss_dssp EEEECCC
T ss_pred EEEeccc
Confidence 9998653
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.89 E-value=1.8 Score=33.21 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------C-CCcc
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E-ASYD 132 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~------~-~~~D 132 (291)
.|+++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+ +. .++..+.+|+.+... . ++.|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~---~~--~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAK---EC--PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH---HS--TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH---hc--CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 57889988877653 44455554 8999999999876544433 22 367788899876421 1 6789
Q ss_pred EEEEcccc
Q 022810 133 RIYSIEMF 140 (291)
Q Consensus 133 ~v~~~~~l 140 (291)
+++.+...
T Consensus 77 ilVnnAg~ 84 (242)
T d1cyda_ 77 LLVNNAAL 84 (242)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99987543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=81.32 E-value=1.3 Score=34.44 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-HHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQC-RVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~-~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=-|++.|. .+..|++. |++|+.+|.+++.++.+.+.. ++.+. ++.++.+|+.+... .
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 47788888876553 44555555 899999999887666555444 34444 78889999987431 1
Q ss_pred -CCccEEEEcccc
Q 022810 129 -ASYDRIYSIEMF 140 (291)
Q Consensus 129 -~~~D~v~~~~~l 140 (291)
++.|+++.+...
T Consensus 85 ~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 85 LGPISGLIANAGV 97 (260)
T ss_dssp SCSEEEEEECCCC
T ss_pred hCCCcEecccccc
Confidence 679998887643
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=81.09 E-value=1.7 Score=33.63 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
+|+++|--|++.|. .+..|++. |++|+.+|.+++.++.+.+..... .++.++.+|+.+... .
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 47778877766552 34445544 899999999998877666554321 378899999987421 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
++.|+++.+...
T Consensus 81 G~iDiLVnnAg~ 92 (251)
T d1zk4a1 81 GPVSTLVNNAGI 92 (251)
T ss_dssp SSCCEEEECCCC
T ss_pred CCceEEEecccc
Confidence 678999887644
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=80.57 E-value=1.9 Score=31.66 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=63.9
Q ss_pred CEEEEEcCCcchH--HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C-C---------CCeEEEEccccCC
Q 022810 65 HTVLDVGCGWGSL--SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E-L---------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~~--~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~i~~~~~d~~~~ 125 (291)
.+|-=||+|+=+. +..++.. |.+|+.+|.+++.++.+.++.... + . .++.. ..+...+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 81 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGDF 81 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTTG
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccccccc
Confidence 4688899985333 3344443 899999999999988877665422 1 0 11221 2222221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
...|+|+= .+.+.++-..++++++.+.++|+-++.-.+.+.
T Consensus 82 ---~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l 122 (186)
T d1wdka3 82 ---GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTSTI 122 (186)
T ss_dssp ---GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred ---cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEeccccc
Confidence 45688775 455566667889999999999998876655543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=80.18 E-value=0.96 Score=29.09 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=38.7
Q ss_pred CEEEEEc-CCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCccCCCccEEEEcccc
Q 022810 65 HTVLDVG-CGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiG-cG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~~~~~~~D~v~~~~~l 140 (291)
++|-=|| ||.|. ++..|.++ |.+|+|.|..+.. ..+.+.+.|+ .+..+ +...+ ...|+|+....+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~--G~~VsGSD~~~~~---~t~~L~~~Gi---~i~~gh~~~~i---~~~d~vV~SsAI 70 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN--GNDVYGSNIEETE---RTAYLRKLGI---PIFVPHSADNW---YDPDLVIKTPAV 70 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSSCCH---HHHHHHHTTC---CEESSCCTTSC---CCCSEEEECTTC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC--CCeEEEEeCCCCh---hHHHHHHCCC---eEEeeeccccc---CCCCEEEEecCc
Confidence 3455555 34554 44555555 8999999987643 2234666665 33333 32222 457999988766
Q ss_pred c
Q 022810 141 E 141 (291)
Q Consensus 141 ~ 141 (291)
.
T Consensus 71 ~ 71 (89)
T d1j6ua1 71 R 71 (89)
T ss_dssp C
T ss_pred C
Confidence 3
|