Citrus Sinensis ID: 022820

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
MHFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW
ccEEccccccccccccccHHHHHHHHHHHHHccEEEcccccHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHccccHHHHHHcccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccc
cccEEcccccccHHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHccccEEcccccccHHHHHHHHHHHccccccHHHcccEEEEEEEHHHcccEEEEEEccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHcEEEEccccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccc
mhflvcsaskvhplhldyFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGkyisledirdadpslysSCKQILEMDAefidsdglglTFVREVEElgsrktvelcpggrsmavnsknREDYVSLLIRHRFVTSISEQTSRFAKGFAdilcnprlqKQFFLSLELEDLDRMLFGSEQAICVEDWKAhteyngykendaQIIWFWKIVGEMPAEQRKILLFFWTSvkhlpvegfaGLASRLHIYktvepadrlptshtcfyrlcfpsypsmaimgDRLRIITQehvgcsfgtw
MHFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYisledirdadPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEelgsrktvelcpggrsmavnsknREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVepadrlptsHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW
MHFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW
**FLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVN*KNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSF***
MHFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW
MHFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW
MHFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW
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MHFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query291 2.2.26 [Sep-21-2011]
Q9SU29873 E3 ubiquitin-protein liga yes no 0.975 0.325 0.635 1e-106
Q4WTF3813 Probable E3 ubiquitin-pro yes no 0.927 0.332 0.377 1e-44
B0XQ72813 Probable E3 ubiquitin-pro N/A no 0.927 0.332 0.377 1e-44
Q5BDP1821 E3 ubiquitin-protein liga yes no 0.927 0.328 0.381 1e-44
Q0CCL1808 Probable E3 ubiquitin-pro N/A no 0.927 0.334 0.377 1e-44
A1D3C5816 Probable E3 ubiquitin-pro N/A no 0.927 0.330 0.374 2e-44
Q2UBP1816 Probable E3 ubiquitin-pro yes no 0.927 0.330 0.374 3e-44
B8N7E5812 Probable E3 ubiquitin-pro N/A no 0.927 0.332 0.374 3e-44
A2QQ28821 Probable E3 ubiquitin-pro yes no 0.927 0.328 0.377 8e-44
A1CQG2815 Probable E3 ubiquitin-pro N/A no 0.927 0.331 0.367 1e-43
>sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1 Back     alignment and function desciption
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/285 (63%), Positives = 218/285 (76%), Gaps = 1/285 (0%)

Query: 8   ASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYS 67
           ASKV PLH D+F F+GRVIALALMH+VQVGV+FDRVF+LQLAG  ISLEDI+D D  +Y+
Sbjct: 589 ASKVDPLHPDFFEFTGRVIALALMHKVQVGVLFDRVFFLQLAGLKISLEDIKDTDRIMYN 648

Query: 68  SCKQILEMDAEFIDSD-GLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLI 126
           SCKQILEMD EF DS+ GLGLTFV E EELG R T+ELCP G+  AVNSKNR+ YV LLI
Sbjct: 649 SCKQILEMDPEFFDSNAGLGLTFVLETEELGKRDTIELCPDGKLKAVNSKNRKQYVDLLI 708

Query: 127 RHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAH 186
             RF T I EQ  +F++GF D+L +    + FF  L LEDLD ML G E  I ++DWKAH
Sbjct: 709 ERRFATPILEQVKQFSRGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAH 768

Query: 187 TEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVE 246
           TEYNG+KE D QI WFWKI+ +M  E+++ +LFFWTS K +PVEGF GL+S+L+IY+  E
Sbjct: 769 TEYNGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGLSSKLYIYRLYE 828

Query: 247 PADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291
             DRLP SHTCFYRLC P YP++ +M  RLR+I Q+HV  SFG W
Sbjct: 829 ANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIAQDHVSSSFGKW 873
E3 ubiquitin protein ligase that regulates leaf senescence through ubiquitination and subsequent degradation of WRKY53.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q4WTF3|RSP5_ASPFU Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hulA PE=3 SV=2 Back     alignment and function description
>sp|B0XQ72|RSP5_ASPFC Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=hulA PE=3 SV=2 Back     alignment and function description
>sp|Q5BDP1|RSP5_EMENI E3 ubiquitin-protein ligase RSP5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hulA PE=1 SV=1 Back     alignment and function description
>sp|Q0CCL1|RSP5_ASPTN Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hulA PE=3 SV=1 Back     alignment and function description
>sp|A1D3C5|RSP5_NEOFI Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hulA PE=3 SV=1 Back     alignment and function description
>sp|Q2UBP1|RSP5_ASPOR Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=hulA PE=3 SV=2 Back     alignment and function description
>sp|B8N7E5|RSP5_ASPFN Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=hulA PE=3 SV=1 Back     alignment and function description
>sp|A2QQ28|RSP5_ASPNC Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hulA PE=3 SV=1 Back     alignment and function description
>sp|A1CQG2|RSP5_ASPCL Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=hulA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
225469990 893 PREDICTED: E3 ubiquitin-protein ligase U 0.993 0.323 0.799 1e-135
297741800 831 unnamed protein product [Vitis vinifera] 0.993 0.347 0.799 1e-135
224137312294 predicted protein [Populus trichocarpa] 0.993 0.982 0.785 1e-134
356522049 867 PREDICTED: E3 ubiquitin-protein ligase U 0.993 0.333 0.768 1e-133
356562613 867 PREDICTED: E3 ubiquitin-protein ligase U 0.993 0.333 0.754 1e-130
147816091 1356 hypothetical protein VITISV_022310 [Viti 0.903 0.193 0.739 1e-120
449434398 925 PREDICTED: E3 ubiquitin-protein ligase U 0.993 0.312 0.719 1e-120
357480475 907 Ubiquitin [Medicago truncatula] gi|35551 0.993 0.318 0.674 1e-120
449516317 887 PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu 0.993 0.325 0.716 1e-119
255583933 876 conserved hypothetical protein [Ricinus 0.883 0.293 0.790 1e-117
>gi|225469990|ref|XP_002272059.1| PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/289 (79%), Positives = 256/289 (88%)

Query: 3   FLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDAD 62
           F    AS+V P+HL YF FSGRVIALALMH+VQVGVVFDRVF+LQLAG  ISLEDI+DAD
Sbjct: 605 FFPNPASEVDPMHLQYFRFSGRVIALALMHKVQVGVVFDRVFFLQLAGMDISLEDIQDAD 664

Query: 63  PSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYV 122
           P LY+SCKQIL+MDAEF+DSD LGLTFVRE+EELGSR+ VELCPGG+++ VNSKNR++YV
Sbjct: 665 PLLYTSCKQILDMDAEFMDSDALGLTFVREIEELGSRRVVELCPGGKNIIVNSKNRDEYV 724

Query: 123 SLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVED 182
            LLIRHRFVTS SEQ ++FA GFADILCN +LQK FF SLELEDLD ML+GSE AICV+D
Sbjct: 725 YLLIRHRFVTSTSEQVAQFAGGFADILCNQKLQKFFFQSLELEDLDWMLYGSESAICVDD 784

Query: 183 WKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIY 242
           WKAHTEYNGYKE D QI WFWKI+GEM AEQRKILLFFWTSVK+LPVEGF GLASRL+IY
Sbjct: 785 WKAHTEYNGYKETDPQIFWFWKIIGEMSAEQRKILLFFWTSVKYLPVEGFGGLASRLYIY 844

Query: 243 KTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291
           K+ EP  RLP+SHTCFYRL FP YPSMAIM DRLRIITQEHVGCSFGTW
Sbjct: 845 KSSEPCVRLPSSHTCFYRLSFPPYPSMAIMEDRLRIITQEHVGCSFGTW 893

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297741800|emb|CBI33105.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224137312|ref|XP_002322526.1| predicted protein [Populus trichocarpa] gi|222867156|gb|EEF04287.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356522049|ref|XP_003529662.1| PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] Back     alignment and taxonomy information
>gi|356562613|ref|XP_003549564.1| PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] Back     alignment and taxonomy information
>gi|147816091|emb|CAN72890.1| hypothetical protein VITISV_022310 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434398|ref|XP_004134983.1| PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357480475|ref|XP_003610523.1| Ubiquitin [Medicago truncatula] gi|355511578|gb|AES92720.1| Ubiquitin [Medicago truncatula] Back     alignment and taxonomy information
>gi|449516317|ref|XP_004165193.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255583933|ref|XP_002532714.1| conserved hypothetical protein [Ricinus communis] gi|223527541|gb|EEF29663.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
TAIR|locus:2135630873 UPL5 "AT4G12570" [Arabidopsis 0.975 0.325 0.635 4.7e-96
UNIPROTKB|Q0J0T6865 Os09g0484300 "Os09g0484300 pro 0.663 0.223 0.559 7.2e-60
ASPGD|ASPL0000058564821 hulA [Emericella nidulans (tax 0.920 0.326 0.388 9.6e-42
UNIPROTKB|Q5BDP1821 hulA "E3 ubiquitin-protein lig 0.920 0.326 0.388 9.6e-42
UNIPROTKB|B0XQ72813 hulA "Probable E3 ubiquitin-pr 0.920 0.329 0.384 1.5e-41
UNIPROTKB|Q4WTF3813 hulA "Probable E3 ubiquitin-pr 0.920 0.329 0.384 1.5e-41
UNIPROTKB|A1D3C5816 hulA "Probable E3 ubiquitin-pr 0.920 0.328 0.381 2e-41
UNIPROTKB|Q0CCL1808 hulA "Probable E3 ubiquitin-pr 0.920 0.331 0.384 2.5e-41
UNIPROTKB|A8HPC8424 CHLREDRAFT_129201 "Predicted p 0.910 0.625 0.366 7.5e-41
UNIPROTKB|A2QQ28821 hulA "Probable E3 ubiquitin-pr 0.920 0.326 0.384 1.2e-40
TAIR|locus:2135630 UPL5 "AT4G12570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 181/285 (63%), Positives = 218/285 (76%)

Query:     8 ASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYS 67
             ASKV PLH D+F F+GRVIALALMH+VQVGV+FDRVF+LQLAG  ISLEDI+D D  +Y+
Sbjct:   589 ASKVDPLHPDFFEFTGRVIALALMHKVQVGVLFDRVFFLQLAGLKISLEDIKDTDRIMYN 648

Query:    68 SCKQILEMDAEFIDSD-GLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLI 126
             SCKQILEMD EF DS+ GLGLTFV E EELG R T+ELCP G+  AVNSKNR+ YV LLI
Sbjct:   649 SCKQILEMDPEFFDSNAGLGLTFVLETEELGKRDTIELCPDGKLKAVNSKNRKQYVDLLI 708

Query:   127 RHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAH 186
               RF T I EQ  +F++GF D+L +    + FF  L LEDLD ML G E  I ++DWKAH
Sbjct:   709 ERRFATPILEQVKQFSRGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAH 768

Query:   187 TEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVE 246
             TEYNG+KE D QI WFWKI+ +M  E+++ +LFFWTS K +PVEGF GL+S+L+IY+  E
Sbjct:   769 TEYNGFKETDRQIDWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRGLSSKLYIYRLYE 828

Query:   247 PADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291
               DRLP SHTCFYRLC P YP++ +M  RLR+I Q+HV  SFG W
Sbjct:   829 ANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIAQDHVSSSFGKW 873
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0010150 "leaf senescence" evidence=IMP
GO:0016567 "protein ubiquitination" evidence=IDA
GO:0042542 "response to hydrogen peroxide" evidence=IEP
GO:0007165 "signal transduction" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
UNIPROTKB|Q0J0T6 Os09g0484300 "Os09g0484300 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
ASPGD|ASPL0000058564 hulA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5BDP1 hulA "E3 ubiquitin-protein ligase RSP5" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms
UNIPROTKB|B0XQ72 hulA "Probable E3 ubiquitin-protein ligase hulA" [Aspergillus fumigatus A1163 (taxid:451804)] Back     alignment and assigned GO terms
UNIPROTKB|Q4WTF3 hulA "Probable E3 ubiquitin-protein ligase hulA" [Aspergillus fumigatus Af293 (taxid:330879)] Back     alignment and assigned GO terms
UNIPROTKB|A1D3C5 hulA "Probable E3 ubiquitin-protein ligase hulA" [Neosartorya fischeri NRRL 181 (taxid:331117)] Back     alignment and assigned GO terms
UNIPROTKB|Q0CCL1 hulA "Probable E3 ubiquitin-protein ligase hulA" [Aspergillus terreus NIH2624 (taxid:341663)] Back     alignment and assigned GO terms
UNIPROTKB|A8HPC8 CHLREDRAFT_129201 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|A2QQ28 hulA "Probable E3 ubiquitin-protein ligase hulA" [Aspergillus niger CBS 513.88 (taxid:425011)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010879001
SubName- Full=Chromosome undetermined scaffold_292, whole genome shotgun sequence; (833 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-93
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 6e-76
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 4e-74
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 9e-72
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  280 bits (718), Expect = 1e-93
 Identities = 111/284 (39%), Positives = 153/284 (53%), Gaps = 13/284 (4%)

Query: 8   ASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYS 67
           +S     HL  F F GR++  AL     + + F R FY +L GK +SLED+ + DP LY 
Sbjct: 80  SSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYK 139

Query: 68  SCKQILEMDAEFIDSDGLGLTFVREVEE-LGSRKTVELCPGGRSMAVNSKNREDYVSLLI 126
           S K++L+ D    D D L LTF  E++   G   TVEL PGGR + V ++N+E+YV L +
Sbjct: 140 SLKELLDND---GDEDDLELTFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYV 196

Query: 127 RHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAH 186
            +R    I EQ   F  GF+++     L   F      E+L+ ++ GSE  I +ED K +
Sbjct: 197 DYRLNKGIEEQVEAFRDGFSEV-IPEELLSLFTP----EELELLICGSED-IDLEDLKKN 250

Query: 187 TEYNGYKENDAQII-WFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTV 245
           TEY G   +D+  I WFW+++     E+RK  L F T    LPV GFA L  +  I +  
Sbjct: 251 TEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVG 310

Query: 246 EPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFG 289
            P DRLPT+HTCF  L  P Y S  I+ ++L     E  G  FG
Sbjct: 311 SPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINE--GAGFG 352

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 291
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0939720 consensus E3 ubiquitin-protein ligase/Putative ups 100.0
KOG09421001 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0941850 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0170621 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 100.0
KOG09433015 consensus Predicted ubiquitin-protein ligase/hyper 100.0
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.1e-79  Score=600.34  Aligned_cols=280  Identities=36%  Similarity=0.658  Sum_probs=269.6

Q ss_pred             ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820            2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID   81 (291)
Q Consensus         2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~   81 (291)
                      .++|||.+.++|+|+++|+|+|++||+||++++.++++|+++|||+|++++++++|++++||++|++|.+|++++.++. 
T Consensus       588 ~~~~n~~s~~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~-  666 (872)
T COG5021         588 TLPINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDET-  666 (872)
T ss_pred             ccCcCccccCCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcc-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999998763 


Q ss_pred             cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820           82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS  161 (291)
Q Consensus        82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~  161 (291)
                        .++++|+++....|...+|||||||++++||.+||++||.++++|++.+++++|++||..||.+|||..+++     +
T Consensus       667 --~l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~-----i  739 (872)
T COG5021         667 --ILDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQ-----I  739 (872)
T ss_pred             --eeeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHh-----h
Confidence              499999999999999999999999999999999999999999999999999999999999999999999887     8


Q ss_pred             CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCc----
Q 022820          162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS----  237 (291)
Q Consensus       162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~----  237 (291)
                      |+++||+.|+||.+..||++|||++|.|+||++++++|.|||+++++|+.|+|++|||||||++|+|++||+.|++    
T Consensus       740 F~e~ELe~LI~G~~e~iDidd~K~~T~Y~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~  819 (872)
T COG5021         740 FDESELELLIGGIPEDIDIDDWKSNTAYHGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGV  819 (872)
T ss_pred             cCHHHHHHHHCCCCccccHHHHhhcccccccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCccc
Confidence            8999999999998433999999999999999999999999999999999999999999999999999999999998    


Q ss_pred             -ceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820          238 -RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW  291 (291)
Q Consensus       238 -~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~  291 (291)
                       +|+|++.+.++++||+||||||+|+||.|+|||+|++||.+||++  +.|||++
T Consensus       820 ~kf~I~~~g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~E--g~GFg~~  872 (872)
T COG5021         820 RKFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINE--GAGFGLL  872 (872)
T ss_pred             ceeeeecCCCccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHh--ccCcCcC
Confidence             889999999999999999999999999999999999999999998  6799985

>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] Back     alignment and domain information
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 1e-42
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 5e-39
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 1e-37
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 2e-37
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 3e-37
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 2e-36
3jvz_C385 E2~ubiquitin-Hect Length = 385 9e-36
3jw0_C385 E2~ubiquitin-Hect Length = 385 1e-35
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 1e-34
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 3e-32
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 7e-25
3pt3_A118 Crystal Structure Of The C-Terminal Lobe Of The Hum 4e-09
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure 
Iteration: 1

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 143/286 (50%), Gaps = 16/286 (5%)
Query: 5   VCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPS 64
           +   S ++P HL+YF F GRV+ L + HR  +   F    Y  +  K + L+D+   D  
Sbjct: 151 INPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAE 210
Query: 65  LYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSL 124
           +Y+S   +LE   + +    L LTF  + E  G   TV+L P GR++ V   N+++YV L
Sbjct: 211 VYNSLNWMLENSIDGV----LDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVEL 266
Query: 125 LIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWK 184
             + R V  + EQ   F  GF +++  P      F   ELE    +L G    I +EDWK
Sbjct: 267 YTQWRIVDRVQEQFKAFMDGFNELI--PEDLVTVFDERELE----LLIGGIAEIDIEDWK 320
Query: 185 AHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS-----RL 239
            HT+Y GY+E+D  I WFWK V E   EQR  LL F T    +PV GF  L       R 
Sbjct: 321 KHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRF 380
Query: 240 HIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVG 285
            I K  E   +LP SHTCF R+  P Y     M  +L +  +E +G
Sbjct: 381 TIEKAGE-VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG 425
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5 Hect Domain Length = 118 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-101
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-100
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-99
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-99
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 6e-96
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 2e-86
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 1e-32
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
 Score =  301 bits (772), Expect = e-101
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 17/288 (5%)

Query: 8   ASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYS 67
           +S  +P HL YF F GR++A A+     +   F R FY  + GK +   D+   D   Y 
Sbjct: 127 SSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQ 186

Query: 68  SCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIR 127
               +LE D   + + G  LTF  EV+E G  +  +L P G ++ V  +N+++YV L+ +
Sbjct: 187 GLVYLLEND---VSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQ 243

Query: 128 HRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHT 187
            R   +I +Q + F +GF +I    RL    F   ELE    +L      I ++D K++T
Sbjct: 244 MRMTGAIRKQLAAFLEGFYEI-IPKRL-ISIFTEQELE----LLISGLPTIDIDDLKSNT 297

Query: 188 EYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL-----ASRLHIY 242
           EY+ Y+ N  QI WFW+ +       R   L F T    +P++GFA L       +  I+
Sbjct: 298 EYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIH 357

Query: 243 KTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRI-ITQEHVGCSFG 289
           +     DRLP++HTCF +L  P+Y S   +   L + I +   G  FG
Sbjct: 358 RDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEG--FG 403
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 100.0
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
Probab=100.00  E-value=2.4e-82  Score=588.57  Aligned_cols=280  Identities=31%  Similarity=0.597  Sum_probs=253.7

Q ss_pred             ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820            2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID   81 (291)
Q Consensus         2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~   81 (291)
                      +|+|||.+..+++|+++|+|+|++||+||+++.+++++||++|||+|+|.+++++||+++||++|++|++|++++.++. 
T Consensus       121 ~~~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l-  199 (405)
T 3h1d_A          121 TYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTL-  199 (405)
T ss_dssp             EEEECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGS-
T ss_pred             eEeeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChhhh-
Confidence            5789999888899999999999999999999999999999999999999999999999999999999999999875543 


Q ss_pred             cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820           82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS  161 (291)
Q Consensus        82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~  161 (291)
                        .+++||+++.+..|...++||+|||++++||.+||++||+++++|+++++++.|++||++||++|+|.+.|+     +
T Consensus       200 --~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~-----l  272 (405)
T 3h1d_A          200 --GYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLIS-----I  272 (405)
T ss_dssp             --SSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHT-----T
T ss_pred             --cceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh-----C
Confidence              377899987777787788999999999999999999999999999999999999999999999999998776     8


Q ss_pred             CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCC-----
Q 022820          162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLA-----  236 (291)
Q Consensus       162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~-----  236 (291)
                      |+|+||+.++||. ++||+++|+++|.|+||+.++++|+|||+|+++||++||++||+|+|||+|+|++||+.+.     
T Consensus       273 F~~~ELe~Li~G~-~~id~~dl~~~t~y~gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~  351 (405)
T 3h1d_A          273 FTEQELELLISGL-PTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGI  351 (405)
T ss_dssp             SCHHHHHHHHHCC-CCCCHHHHHHTEEEESSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSB
T ss_pred             CCHHHHHHHhCCC-CCCCHHHHHhhCcccCCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCccccccccCCC
Confidence            8999999999998 6899999999999999999999999999999999999999999999999999999999986     


Q ss_pred             cceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820          237 SRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW  291 (291)
Q Consensus       237 ~~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~  291 (291)
                      ++|+|.+.+.++++||+||||||+|+||.|+|+|+||+||++||++ +++|||||
T Consensus       352 ~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~e-~~~GFgla  405 (405)
T 3h1d_A          352 QKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE-ASEGFGLA  405 (405)
T ss_dssp             CCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHHC---------
T ss_pred             ceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHHh-CCCCcCCC
Confidence            4899988777789999999999999999999999999999999986 68999997
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 291
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 4e-66
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 2e-61
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  209 bits (532), Expect = 4e-66
 Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 13/286 (4%)

Query: 1   MHFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRD 60
               +  AS ++P HL YFCF GR IA+AL H   +   F   FY ++  K ++++D+  
Sbjct: 96  YCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLES 155

Query: 61  ADPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNRED 120
            D   Y+S   I + +   I+  GL + F  ++E LG   + +L  GG ++ V  +N+++
Sbjct: 156 IDTEFYNSLIWIRDNN---IEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDE 212

Query: 121 YVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICV 180
           Y+ L+   RF   + EQT  F  GF +++    LQ  +F   ELE    ++    Q + +
Sbjct: 213 YIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQ--YFDEKELE----VMLCGMQEVDL 266

Query: 181 EDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLH 240
            DW+ +T Y  Y  N  QIIWFW+ V E   E R  LL F T    LP+ GFA L     
Sbjct: 267 ADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNG 326

Query: 241 IYKTV----EPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQE 282
             K           LP SHTCF RL  P Y S   + ++L    +E
Sbjct: 327 PQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE 372
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-73  Score=524.96  Aligned_cols=271  Identities=35%  Similarity=0.621  Sum_probs=255.1

Q ss_pred             ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820            2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID   81 (291)
Q Consensus         2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~   81 (291)
                      +++|||.+..+++++++|+++|+++|+|++++.+++++||++|||+|+|.+++++||+++||+++++++++++++.++. 
T Consensus        97 ~~~~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~~~sl~~l~~~~~e~~-  175 (374)
T d1nd7a_          97 CLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEEC-  175 (374)
T ss_dssp             CEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSCSCSS-
T ss_pred             ccccCCccccChhHHHHHHHhHHHHHHHHHcCcccCCCccHHHHHHhcCCCCCHHHHHHhCHHHHHhHHHHHhcccccc-
Confidence            5789999888899999999999999999999999999999999999999999999999999999999999998775543 


Q ss_pred             cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820           82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS  161 (291)
Q Consensus        82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~  161 (291)
                        .++++|++..+..+...++||++||++++||.+|+++||+++++++++++++.|++|||+||++|+|...|+     .
T Consensus       176 --~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~-----~  248 (374)
T d1nd7a_         176 --GLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQ-----Y  248 (374)
T ss_dssp             --CCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGT-----T
T ss_pred             --ccceeEEEEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHhCCHHHHh-----h
Confidence              478899998888888899999999999999999999999999999999999999999999999999999877     8


Q ss_pred             CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCC-----
Q 022820          162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLA-----  236 (291)
Q Consensus       162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~-----  236 (291)
                      |+|+||+.++||. +++|+++|++++.|+||++++++|+|||+++++||+|+|++||+|+||++|+|++||+.+.     
T Consensus       249 f~~~eL~~licG~-~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~l~~~~~~  327 (374)
T d1nd7a_         249 FDEKELEVMLCGM-QEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGP  327 (374)
T ss_dssp             CCHHHHHHHHHCC-CCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEE
T ss_pred             CCHHHHHHhhCCC-CCCCHHHHhhheeeccCCCCCHHHHHHHHHHHhcCHHHHHHhheeecCCCCCCCcchhhhcccCCC
Confidence            8999999999998 6899999999999999999999999999999999999999999999999999999999884     


Q ss_pred             cceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHh
Q 022820          237 SRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQE  282 (291)
Q Consensus       237 ~~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~  282 (291)
                      ++++|...+ ++++||+||||||+|+||.|+|+|+||+||++||+|
T Consensus       328 ~~~~i~~~~-~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~  372 (374)
T d1nd7a_         328 QKFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE  372 (374)
T ss_dssp             CCEEEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHS
T ss_pred             CceeeccCC-CCCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHHHh
Confidence            457776544 668999999999999999999999999999999997
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure