Citrus Sinensis ID: 022821

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
MAKMSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH
cccHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccEEEEEEEccccccEEEccEEEEEEEEEEEEEEcccccccEEEEEEcccccccccEEEEcccccccccEEEEEEEEEcccccEEEEEEcccccccccEEEEEEEEccEEEEEEccEEEEEEEcccccccccccccccEEEEEEEccccccccccEEEcccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEccEccccEEEEccccHHHccEEEEEEEEccEEEEEEccccEEEEcccHHcccccccccccEEEEEccccccHHHccccEEcccccccEEEEEcccccccEEccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHccEEEEcccccccccccccccccccc
MAKMSLIFSLFVGLLMVVLVSsakfddlyqtswafdhvqydgdtlklnldnysgagfaskskyLFGKVSIQIKlvggdsagTVTAFYmssdgpnhnefdfeflgnttgepylvQTNVYvngvgnreqrldlwfdptkefhtySLLWNQRQVvflvdetpirvhtnlehkgipfpkdqamgVYSSIwnaddwatqggrvktdwshapfiasykgfdidacecpasvagadnakkcsssaekrfwwdeptlselnvhqsHQLMWVRANHLIydyctdtsrfpaiptecvhhrh
MAKMSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHtnlehkgipfpkDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH
MAKMSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH
****SLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADN*******AEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECV****
****SLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVA***************FWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC*****
MAKMSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVA************EKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH
MAKMSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPA******************FWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC*****
iiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKMSLIFSLFVGLLMVVLVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query291 2.2.26 [Sep-21-2011]
Q8LDW9290 Xyloglucan endotransgluco yes no 0.979 0.982 0.722 1e-127
Q39857295 Probable xyloglucan endot no no 0.893 0.881 0.568 2e-85
Q9XIW1293 Probable xyloglucan endot no no 0.969 0.962 0.505 3e-84
Q41638292 Xyloglucan endotransgluco N/A no 0.941 0.938 0.522 4e-84
Q8LNZ5293 Probable xyloglucan endot N/A no 0.938 0.931 0.517 6e-84
Q41542293 Probable xyloglucan endot N/A no 0.886 0.880 0.537 3e-83
Q8LER3293 Probable xyloglucan endot no no 0.938 0.931 0.501 4e-81
Q39099296 Xyloglucan endotransgluco no no 0.958 0.942 0.516 4e-81
Q6YDN9295 Xyloglucan endotransgluco N/A no 0.886 0.874 0.541 2e-80
Q8LF99292 Probable xyloglucan endot no no 0.931 0.928 0.491 1e-79
>sp|Q8LDW9|XTH9_ARATH Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2 Back     alignment and function desciption
 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/295 (72%), Positives = 245/295 (83%), Gaps = 10/295 (3%)

Query: 1   MAKMSLIFSLFVGLLMVV----LVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAG 56
           M  M L   + + +++VV     VS AKFD+LY++SWA DH   +G+  KL LDNYSGAG
Sbjct: 1   MVGMDLFKCVMMIMVLVVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAG 60

Query: 57  FASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTN 116
           F S+SKYLFGKVSIQIKLV GDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPY+VQTN
Sbjct: 61  FESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTN 120

Query: 117 VYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKD 176
           +YVNGVGNREQRL+LWFDPT EFHTYS+LW++R VVF+VDETPIRV  NLE KGIPF KD
Sbjct: 121 IYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKD 180

Query: 177 QAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSS 236
           QAMGVYSSIWNADDWATQGG VKTDWSHAPF+ASYK F IDACE P +     +  KC  
Sbjct: 181 QAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEIPTTT----DLSKC-- 234

Query: 237 SAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH 291
           + +++FWWDEPT+SEL++HQ+HQL+WVRANH+IYDYC D +RFP  P EC HHRH
Sbjct: 235 NGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFDATRFPVTPLECQHHRH 289
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Involved in internodal cell elongation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q39857|XTH_SOYBN Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1 Back     alignment and function description
>sp|Q9XIW1|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1 Back     alignment and function description
>sp|Q41638|XTHA_PHAAN Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1 Back     alignment and function description
>sp|Q8LNZ5|XTHB_PHAAN Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1 Back     alignment and function description
>sp|Q41542|XTH_WHEAT Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1 Back     alignment and function description
>sp|Q8LER3|XTH7_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2 Back     alignment and function description
>sp|Q39099|XTH4_ARATH Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1 Back     alignment and function description
>sp|Q6YDN9|XTH_BRAOB Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1 Back     alignment and function description
>sp|Q8LF99|XTH6_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
118481085296 unknown [Populus trichocarpa] gi|1184819 0.979 0.962 0.818 1e-144
224146658289 predicted protein [Populus trichocarpa] 0.979 0.986 0.818 1e-144
119444239296 xyloglucan endotransglycosylase precurso 0.979 0.962 0.811 1e-143
361052049294 xyloglucan endotransglycosylase [Gossypi 1.0 0.989 0.800 1e-143
356543758296 PREDICTED: xyloglucan endotransglucosyla 0.989 0.972 0.805 1e-142
383082019313 xyloglucan endotransglycosylase/hydrolas 0.996 0.926 0.794 1e-142
224126895294 predicted protein [Populus trichocarpa] 0.979 0.969 0.804 1e-141
255563397289 Xyloglucan endotransglucosylase/hydrolas 0.934 0.941 0.841 1e-141
225447415296 PREDICTED: xyloglucan endotransglucosyla 0.986 0.969 0.793 1e-141
383082017313 xyloglucan endotransglycosylase/hydrolas 0.996 0.926 0.787 1e-140
>gi|118481085|gb|ABK92496.1| unknown [Populus trichocarpa] gi|118481952|gb|ABK92908.1| unknown [Populus trichocarpa] gi|118481968|gb|ABK92915.1| unknown [Populus trichocarpa] gi|118485439|gb|ABK94576.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 234/286 (81%), Positives = 263/286 (91%), Gaps = 1/286 (0%)

Query: 7   IFSLFVGLLMVV-LVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLF 65
           +   FVG  ++V LVSSAKFD+L+Q SWA DH  Y+G+ L+L LDNYSGAGF SKSKY+F
Sbjct: 8   MLGFFVGFFLIVGLVSSAKFDELFQPSWALDHFAYEGELLRLKLDNYSGAGFQSKSKYMF 67

Query: 66  GKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR 125
           GKV++QIKLV GDSAGTVTAFYMSS+GP HNEFDFEFLGNTTGEPYLVQTNVYVNGVGN+
Sbjct: 68  GKVTVQIKLVEGDSAGTVTAFYMSSEGPYHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNK 127

Query: 126 EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSI 185
           EQRL+LWFDPTK+FH+YSLLWNQRQVVFLVDETPIR+HTN+E+KGIPFPKDQAMGVYSSI
Sbjct: 128 EQRLNLWFDPTKDFHSYSLLWNQRQVVFLVDETPIRLHTNMENKGIPFPKDQAMGVYSSI 187

Query: 186 WNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWD 245
           WNADDWATQGGRVKTDWSHAPF+ASYKGF+IDACECP SVA ADNAKKCSSS EKR+WWD
Sbjct: 188 WNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPVSVAAADNAKKCSSSGEKRYWWD 247

Query: 246 EPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH 291
           EPTLSELN HQSHQL+WV+ANH++YDYC+DT+RFP  P EC+HH H
Sbjct: 248 EPTLSELNAHQSHQLLWVKANHMVYDYCSDTARFPVTPLECLHHSH 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146658|ref|XP_002326087.1| predicted protein [Populus trichocarpa] gi|222862962|gb|EEF00469.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|119444239|gb|ABL75361.1| xyloglucan endotransglycosylase precursor [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|361052049|gb|AEW07363.1| xyloglucan endotransglycosylase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|356543758|ref|XP_003540327.1| PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Glycine max] Back     alignment and taxonomy information
>gi|383082019|dbj|BAM05662.1| xyloglucan endotransglycosylase/hydrolase 3, partial [Eucalyptus pilularis] gi|383082021|dbj|BAM05663.1| xyloglucan endotransglycosylase/hydrolase 3, partial [Eucalyptus pyrocarpa] Back     alignment and taxonomy information
>gi|224126895|ref|XP_002319953.1| predicted protein [Populus trichocarpa] gi|118484118|gb|ABK93943.1| unknown [Populus trichocarpa] gi|222858329|gb|EEE95876.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563397|ref|XP_002522701.1| Xyloglucan endotransglucosylase/hydrolase protein 9 precursor, putative [Ricinus communis] gi|223538051|gb|EEF39663.1| Xyloglucan endotransglucosylase/hydrolase protein 9 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225447415|ref|XP_002281574.1| PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Vitis vinifera] gi|147821441|emb|CAN74580.1| hypothetical protein VITISV_024798 [Vitis vinifera] gi|296081233|emb|CBI17977.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|383082017|dbj|BAM05661.1| xyloglucan endotransglycosylase/hydrolase 3, partial [Eucalyptus pilularis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
TAIR|locus:2125437290 XTH9 "xyloglucan endotransgluc 0.979 0.982 0.722 4.7e-119
TAIR|locus:2159118293 XTH5 "xyloglucan endotransgluc 0.872 0.866 0.549 1.1e-80
TAIR|locus:2065821296 XTH4 "xyloglucan endotransgluc 0.958 0.942 0.516 1.3e-77
TAIR|locus:2137609293 XTH7 "xyloglucan endotransgluc 0.938 0.931 0.505 5.5e-77
TAIR|locus:2169990292 XTH6 "xyloglucan endotransgluc 0.931 0.928 0.494 2.1e-75
TAIR|locus:2095168291 XTH16 "xyloglucan endotransglu 0.931 0.931 0.493 2.5e-74
TAIR|locus:2129445289 XTH15 "xyloglucan endotransglu 0.965 0.972 0.494 1.7e-73
TAIR|locus:2174582284 XTH13 "xyloglucan endotransglu 0.917 0.940 0.483 3.2e-72
TAIR|locus:2174572285 XTH12 "xyloglucan endotransglu 0.917 0.936 0.491 4.1e-72
TAIR|locus:2117567286 XTR6 "xyloglucan endotransglyc 0.958 0.975 0.479 2.9e-71
TAIR|locus:2125437 XTH9 "xyloglucan endotransglucosylase/hydrolase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 213/295 (72%), Positives = 245/295 (83%)

Query:     1 MAKMSLIFSLFVGLLMVV----LVSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAG 56
             M  M L   + + +++VV     VS AKFD+LY++SWA DH   +G+  KL LDNYSGAG
Sbjct:     1 MVGMDLFKCVMMIMVLVVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAG 60

Query:    57 FASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTN 116
             F S+SKYLFGKVSIQIKLV GDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPY+VQTN
Sbjct:    61 FESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTN 120

Query:   117 VYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKD 176
             +YVNGVGNREQRL+LWFDPT EFHTYS+LW++R VVF+VDETPIRV  NLE KGIPF KD
Sbjct:   121 IYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKD 180

Query:   177 QAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSS 236
             QAMGVYSSIWNADDWATQGG VKTDWSHAPF+ASYK F IDACE P +     +  KC+ 
Sbjct:   181 QAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEIPTTT----DLSKCNG 236

Query:   237 SAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH 291
               +++FWWDEPT+SEL++HQ+HQL+WVRANH+IYDYC D +RFP  P EC HHRH
Sbjct:   237 --DQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFDATRFPVTPLECQHHRH 289
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA;ISS
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2159118 XTH5 "xyloglucan endotransglucosylase/hydrolase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065821 XTH4 "xyloglucan endotransglucosylase/hydrolase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137609 XTH7 "xyloglucan endotransglucosylase/hydrolase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169990 XTH6 "xyloglucan endotransglucosylase/hydrolase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095168 XTH16 "xyloglucan endotransglucosylase/hydrolase 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129445 XTH15 "xyloglucan endotransglucosylase/hydrolase 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174582 XTH13 "xyloglucan endotransglucosylase/hydrolase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174572 XTH12 "xyloglucan endotransglucosylase/hydrolase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117567 XTR6 "xyloglucan endotransglycosylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41638XTHA_PHAAN2, ., 4, ., 1, ., 2, 0, 70.52200.94150.9383N/Ano
Q8LNZ5XTHB_PHAAN2, ., 4, ., 1, ., 2, 0, 70.51700.93810.9317N/Ano
Q6YDN9XTH_BRAOB2, ., 4, ., 1, ., 2, 0, 70.54100.88650.8745N/Ano
Q41542XTH_WHEAT2, ., 4, ., 1, ., 2, 0, 70.53730.88650.8805N/Ano
Q40144XTH1_SOLLC2, ., 4, ., 1, ., 2, 0, 70.50750.87970.8648N/Ano
Q8LDW9XTH9_ARATH2, ., 4, ., 1, ., 2, 0, 70.72200.97930.9827yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.10.983
4th Layer2.4.1.2070.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XIX.2748.1
SubName- Full=Putative uncharacterized protein; (272 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-148
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 1e-102
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 2e-76
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 1e-23
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 3e-23
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 5e-21
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 3e-16
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 2e-10
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 0.001
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  416 bits (1073), Expect = e-148
 Identities = 146/269 (54%), Positives = 187/269 (69%), Gaps = 10/269 (3%)

Query: 21  SSAKFDDLYQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGD 78
            +A FD+ +  +W  DH++   DG +++L LD  SG+GF SK+KYLFG  S++IKL  GD
Sbjct: 2   VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGD 61

Query: 79  SAGTVTAFYMSSDG-PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTK 137
           SAGTVTAFY+SS G  NH+E DFEFLGN TG+PY +QTNV+ NGVG REQR+ LWFDPT 
Sbjct: 62  SAGTVTAFYLSSQGPDNHDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTA 121

Query: 138 EFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGR 197
           +FHTYS+LWN  Q+VF VD+ PIRV  N E  G+P+P  Q MGVY+SIW+  DWATQGGR
Sbjct: 122 DFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGR 181

Query: 198 VKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQS 257
           VK DWS+APF+ASY+ F +D C         D     SS +    WW+  T  +L+ +Q 
Sbjct: 182 VKIDWSYAPFVASYRDFKLDGCV-------VDPGDSFSSCSCTEDWWNGSTYQQLSANQQ 234

Query: 258 HQLMWVRANHLIYDYCTDTSRFPAIPTEC 286
             + WVR N+++YDYC D  R+P  P EC
Sbjct: 235 RAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 291
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 100.0
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 100.0
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.97
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.96
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.96
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.95
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.94
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.93
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.82
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.54
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.39
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 95.32
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 93.97
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 93.37
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 91.12
smart00560133 LamGL LamG-like jellyroll fold domain. 91.0
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 84.13
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.7e-86  Score=610.13  Aligned_cols=285  Identities=47%  Similarity=0.894  Sum_probs=252.0

Q ss_pred             CchhhHHHHHHHHHH-HHHHh-ccccccccccceecCCc--eEecCCeEEEEEeCCCcceEEEcceeeeceEEEEEEeeC
Q 022821            1 MAKMSLIFSLFVGLL-MVVLV-SSAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVG   76 (291)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~w~~~~--~~~~g~~l~L~ld~~sgs~i~Sk~~f~YG~~eariKl~~   76 (291)
                      ||.|..+++++++++ ++.-. +..+|.++|.++|+.+|  +..+|+.|+|+||+.+|++|+||..|+||+||||||+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~   80 (291)
T PLN03161          1 MASLKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVP   80 (291)
T ss_pred             ChhHHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCC
Confidence            666655544433332 21111 35689999999999999  455778999999999999999999999999999999999


Q ss_pred             CCCCceEEEEEeccCCCCCCceEEEEcCCCCCCCceEEeeEEeCCCCCcceeEecCCCCCCCcEEEEEEEccceEEEEEc
Q 022821           77 GDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD  156 (291)
Q Consensus        77 g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVD  156 (291)
                      |+++|+||||||++.++.+|||||||||+++++|+++|||+|.+|.++|++++.++|||+++||+|+|+|+|++|+||||
T Consensus        81 G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVD  160 (291)
T PLN03161         81 GNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVD  160 (291)
T ss_pred             CCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEEC
Confidence            88899999999999777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEEeecCCCcccCCCCCCCCCC
Q 022821          157 ETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSS  236 (291)
Q Consensus       157 G~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~~C~~~~~~~~~~~~~~C~~  236 (291)
                      |++||++++.+..|.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.+++.    .....|..
T Consensus       161 G~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~----~~~~~c~~  236 (291)
T PLN03161        161 GTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGP----VSIKQCAD  236 (291)
T ss_pred             CEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCC----CCccccCC
Confidence            99999999877778899988999999999999999999999999999999999999999999987641    02346963


Q ss_pred             CcccCcCcCccCcccCCHHHHHHHHHHhhcCeeeecCcCCCCCCC-CCCCccCCC
Q 022821          237 SAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPA-IPTECVHHR  290 (291)
Q Consensus       237 ~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~p~ec~~~~  290 (291)
                      . +...||+++.|++|+++|+++|+|||+||||||||+|++|||+ +||||.+++
T Consensus       237 ~-~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~  290 (291)
T PLN03161        237 P-TPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKPQ  290 (291)
T ss_pred             C-CccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCCc
Confidence            1 1357999999999999999999999999999999999999999 899998764

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 1e-86
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 2e-49
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 4e-49
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 2e-47
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 2e-47
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 3e-13
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 1e-10
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 2e-10
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 3e-10
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 2e-09
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 2e-09
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 3e-09
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 3e-09
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 3e-09
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 7e-09
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 2e-08
3axd_A249 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 7e-04
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 150/264 (56%), Positives = 190/264 (71%), Gaps = 10/264 (3%)
Query: 29  YQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAF 86
           Y  +WAFDH++Y   G+ ++L+LD Y+G GF SK  YLFG  S+Q+KLV GDSAGTVTAF
Sbjct: 21  YVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAF 80
Query: 87  YMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLW 146
           Y+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKEFH YS+LW
Sbjct: 81  YLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLW 140
Query: 147 NQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAP 206
           N   +VFLVD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KTDWS AP
Sbjct: 141 NMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAP 200
Query: 207 FIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRAN 266
           FIASY+ F ID CE  ASV     AK C++   +  WWD+    +L+  Q  +L WVR  
Sbjct: 201 FIASYRSFHIDGCE--ASV----EAKFCATQGAR--WWDQKEFQDLDAFQYRRLSWVRQK 252
Query: 267 HLIYDYCTDTSRFPAIPTECVHHR 290
           + IY+YCTD SR+P++P EC   R
Sbjct: 253 YTIYNYCTDRSRYPSMPPECKRDR 276
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form Length = 249 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 1e-113
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 1e-98
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 1e-63
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 2e-61
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 4e-61
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 6e-56
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 5e-54
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 4e-51
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 3e-48
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 1e-20
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 2e-15
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 2e-08
3rq0_A269 Glycosyl hydrolases family protein 16; structural 4e-07
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 1e-06
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 2e-06
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 3e-06
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 8e-06
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 3e-05
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 1e-04
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 2e-04
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 3e-04
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 3e-04
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  326 bits (837), Expect = e-113
 Identities = 148/272 (54%), Positives = 188/272 (69%), Gaps = 10/272 (3%)

Query: 22  SAKFDDLYQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDS 79
              F   Y  +WAFDH++Y   G+ ++L+LD Y+G GF SK  YLFG  S+Q+KLV GDS
Sbjct: 14  DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDS 73

Query: 80  AGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEF 139
           AGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKEF
Sbjct: 74  AGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEF 133

Query: 140 HTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVK 199
           H YS+LWN   +VFLVD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  K
Sbjct: 134 HYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEK 193

Query: 200 TDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQ 259
           TDWS APFIASY+ F ID CE          AK C++   +  WWD+    +L+  Q  +
Sbjct: 194 TDWSKAPFIASYRSFHIDGCEASVE------AKFCATQGAR--WWDQKEFQDLDAFQYRR 245

Query: 260 LMWVRANHLIYDYCTDTSRFPAIPTECVHHRH 291
           L WVR  + IY+YCTD SR+P++P EC   R 
Sbjct: 246 LSWVRQKYTIYNYCTDRSRYPSMPPECKRDRD 277
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Length = 308 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 100.0
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 100.0
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 100.0
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 100.0
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 100.0
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.97
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.97
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.97
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.94
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.93
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.85
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.8
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 95.73
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 92.38
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 91.09
4dqa_A355 Uncharacterized protein; two domains structure, DU 81.64
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-79  Score=567.38  Aligned_cols=261  Identities=56%  Similarity=1.077  Sum_probs=242.9

Q ss_pred             ccccccccccceecCCc--eEecCCeEEEEEeCCCcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEeccCCCCCCce
Q 022821           21 SSAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEF   98 (291)
Q Consensus        21 ~~~~~~~~~~~~w~~~~--~~~~g~~l~L~ld~~sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~~~~~EI   98 (291)
                      .+.+|+++|.++|+.+|  +..+|+.|+|+|++++||+|.||++|+||+||||||+|+|+++|+||||||++++|.++||
T Consensus        13 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~p~~gEI   92 (278)
T 1umz_A           13 VDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEI   92 (278)
T ss_dssp             CCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEE
T ss_pred             cCCcccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCCCCCCeE
Confidence            46789999999999999  4567888999999999999999999999999999999998888999999999998889999


Q ss_pred             EEEEcCCCCCCCceEEeeEEeCCCCCcceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCc
Q 022821           99 DFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQA  178 (291)
Q Consensus        99 DiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P  178 (291)
                      |||++|+++++|+++|+|+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||+++|++++.+..+.+|||++|
T Consensus        93 DmE~lG~~~g~~~tvhtn~~~~g~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~~~Pf~~P  172 (278)
T 1umz_A           93 DFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQP  172 (278)
T ss_dssp             EEEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSC
T ss_pred             EEEEeCCCCCCceEEEEEEecCCCCCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCccCcCCCc
Confidence            99999999889999999999999999999999999999999999999999999999999999999987766788999999


Q ss_pred             eeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEEeecCCCcccCCCCCCCCCCCcccCcCcCccCcccCCHHHHH
Q 022821          179 MGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSH  258 (291)
Q Consensus       179 m~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~~C~~~~~~~~~~~~~~C~~~~~~~~w~~~~~~~~l~~~~~~  258 (291)
                      |+|+||||+||+|+++||++++||+++||+|+|+.+++.+|..+.      +.+.|..  ....||+++.+++|++.|++
T Consensus       173 ~~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~~------~~~~c~~--~~~~~~~~~~~~~l~~~~~~  244 (278)
T 1umz_A          173 MKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASV------EAKFCAT--QGARWWDQKEFQDLDAFQYR  244 (278)
T ss_dssp             BEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCS------SSCCCTT--TTCSGGGSGGGSSCCHHHHH
T ss_pred             eEEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCCC------CCCccCC--CcccccccCccccCCHHHHH
Confidence            999999999999999999889999999999999999999999764      2346973  34569999999999999999


Q ss_pred             HHHHHhhcCeeeecCcCCCCCCCCCCCccCC
Q 022821          259 QLMWVRANHLIYDYCTDTSRFPAIPTECVHH  289 (291)
Q Consensus       259 ~~~~~~~~~~~y~yc~d~~r~~~~p~ec~~~  289 (291)
                      +|+|||+||||||||+|++|||++||||.++
T Consensus       245 ~~~~~~~~~~~y~yc~d~~r~~~~~~ec~~~  275 (278)
T 1umz_A          245 RLSWVRQKYTIYNYCTDRSRYPSMPPECKRD  275 (278)
T ss_dssp             HHHHHHHHTEEEEGGGCTTTCSSCCTHHHHH
T ss_pred             HHHHHHHCCeEEecCCCCCcCCCCCcccCCC
Confidence            9999999999999999999999999999754
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 291
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 1e-101
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 4e-41
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 4e-25
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 3e-18
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 6e-10
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 2e-05
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  294 bits (754), Expect = e-101
 Identities = 148/272 (54%), Positives = 187/272 (68%), Gaps = 10/272 (3%)

Query: 22  SAKFDDLYQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDS 79
              F   Y  +WAFDH++Y   G+ ++L+LD Y+G GF SK  YLFG  S+Q+KLV GDS
Sbjct: 3   DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDS 62

Query: 80  AGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEF 139
           AGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKEF
Sbjct: 63  AGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEF 122

Query: 140 HTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVK 199
           H YS+LWN   +VFLVD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  K
Sbjct: 123 HYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEK 182

Query: 200 TDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQ 259
           TDWS APFIASY+ F ID CE          AK C++      WWD+    +L+  Q  +
Sbjct: 183 TDWSKAPFIASYRSFHIDGCEASVE------AKFCATQGA--RWWDQKEFQDLDAFQYRR 234

Query: 260 LMWVRANHLIYDYCTDTSRFPAIPTECVHHRH 291
           L WVR  + IY+YCTD SR+P++P EC   R 
Sbjct: 235 LSWVRQKYTIYNYCTDRSRYPSMPPECKRDRD 266
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.96
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.96
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.96
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.95
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 93.58
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 92.92
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 91.67
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 90.07
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 89.66
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 89.59
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 88.15
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 87.28
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 86.99
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 83.41
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=2.2e-81  Score=575.65  Aligned_cols=262  Identities=56%  Similarity=1.081  Sum_probs=246.2

Q ss_pred             cccccccccceecCCc--eEecCCeEEEEEeCCCcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEeccCCCCCCceE
Q 022821           22 SAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFD   99 (291)
Q Consensus        22 ~~~~~~~~~~~w~~~~--~~~~g~~l~L~ld~~sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~~~~~EID   99 (291)
                      ..+|+++|.++|+.+|  +.++|..|+|+||+.+||+|+||++|+||+||||||+|+|+++|++++||++++++.++|||
T Consensus         3 ~~~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~~~~~dEID   82 (267)
T d1umza_           3 DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEID   82 (267)
T ss_dssp             CCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEEE
T ss_pred             cccCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCCCCCCCeEE
Confidence            4689999999999999  67789999999999999999999999999999999999998889999999999888899999


Q ss_pred             EEEcCCCCCCCceEEeeEEeCCCCCcceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCce
Q 022821          100 FEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAM  179 (291)
Q Consensus       100 iE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm  179 (291)
                      ||++|++.++|+++|+|+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.++|+++||
T Consensus        83 iE~lG~~~~~~~~v~tn~~~~g~g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p~~~pm  162 (267)
T d1umza_          83 FEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPM  162 (267)
T ss_dssp             EEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCB
T ss_pred             EEEecccCCcccEEEeeEeCCCCCCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCCcceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888999989999


Q ss_pred             eEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEEeecCCCcccCCCCCCCCCCCcccCcCcCccCcccCCHHHHHH
Q 022821          180 GVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQ  259 (291)
Q Consensus       180 ~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~~C~~~~~~~~~~~~~~C~~~~~~~~w~~~~~~~~l~~~~~~~  259 (291)
                      +|++|||+||+|||+||+.+|||+++||+|+|++|+|+||...+      ..+.|..  .+..||++..++.|+.+|+++
T Consensus       163 ~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~------~~~~~~~--~~~~~~~~~~~~~l~~~~~~~  234 (267)
T d1umza_         163 KIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASV------EAKFCAT--QGARWWDQKEFQDLDAFQYRR  234 (267)
T ss_dssp             EEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCS------SSCCCTT--TTCSGGGSGGGSSCCHHHHHH
T ss_pred             EEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCC------CCcccCC--CCCccccccccccCCHHHHHH
Confidence            99999999999999999999999999999999999999998775      3344542  455799999999999999999


Q ss_pred             HHHHhhcCeeeecCcCCCCCCCCCCCccCCCC
Q 022821          260 LMWVRANHLIYDYCTDTSRFPAIPTECVHHRH  291 (291)
Q Consensus       260 ~~~~~~~~~~y~yc~d~~r~~~~p~ec~~~~~  291 (291)
                      |+|||+||||||||.|++|||.+||||.+|++
T Consensus       235 ~~~~~~~~~~y~yC~d~~r~~~~p~EC~~~~~  266 (267)
T d1umza_         235 LSWVRQKYTIYNYCTDRSRYPSMPPECKRDRD  266 (267)
T ss_dssp             HHHHHHHTEEEEGGGCTTTCSSCCTHHHHHTC
T ss_pred             HHHHHHCCcEEccCCCCCcCCCCCcccCCCCC
Confidence            99999999999999999999999999988764
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure