Citrus Sinensis ID: 022823
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 291 | ||||||
| 356556652 | 235 | PREDICTED: bidirectional sugar transport | 0.786 | 0.974 | 0.596 | 4e-81 | |
| 225461810 | 235 | PREDICTED: bidirectional sugar transport | 0.649 | 0.804 | 0.777 | 1e-78 | |
| 356544144 | 235 | PREDICTED: bidirectional sugar transport | 0.683 | 0.846 | 0.738 | 1e-77 | |
| 351722328 | 235 | uncharacterized protein LOC100305842 [Gl | 0.683 | 0.846 | 0.743 | 1e-77 | |
| 388506414 | 236 | unknown [Medicago truncatula] | 0.642 | 0.792 | 0.760 | 1e-75 | |
| 358348726 | 236 | Protein RUPTURED POLLEN GRAIN [Medicago | 0.642 | 0.792 | 0.760 | 1e-75 | |
| 217073964 | 236 | unknown [Medicago truncatula] gi|3884951 | 0.642 | 0.792 | 0.755 | 3e-74 | |
| 358343709 | 235 | Protein RUPTURED POLLEN GRAIN [Medicago | 0.666 | 0.825 | 0.731 | 4e-74 | |
| 255639413 | 210 | unknown [Glycine max] | 0.628 | 0.871 | 0.743 | 1e-71 | |
| 388521553 | 235 | unknown [Lotus japonicus] | 0.646 | 0.8 | 0.771 | 3e-70 |
| >gi|356556652|ref|XP_003546637.1| PREDICTED: bidirectional sugar transporter SWEET2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 192/285 (67%), Gaps = 56/285 (19%)
Query: 6 TYQALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMW 65
Y V KDA G+AGNIFAFGLFVSP+PTFRRIIRN STE FSGLPY+Y+LLNC+I +W
Sbjct: 6 AYSICEVGKDAAGVAGNIFAFGLFVSPIPTFRRIIRNGSTEMFSGLPYIYSLLNCMICLW 65
Query: 66 YGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDKKVRMLGLLLAVIGIFSIIVAV 125
YGTPL+S DN+LVTTVNSIGAAFQLVYIILF+ Y EK +KVRM+GLLLAV+GIF II+
Sbjct: 66 YGTPLISPDNLLVTTVNSIGAAFQLVYIILFLMYAEKARKVRMVGLLLAVLGIFVIILVG 125
Query: 126 SLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSF 185
SLQI + R+MFVG LSCA+LISMFASPLFII LVI+TKS+EFMPFYLSLSTFLMS
Sbjct: 126 SLQIDDSAMRRMFVGFLSCASLISMFASPLFIIKLVIRTKSIEFMPFYLSLSTFLMS--- 182
Query: 186 LAYGIMNWDPFIYVWFLLPSHFSLLILFGVCFFFCFMLYNIQTVSLQSLLLQKKVICPLV 245
F F LY LL I
Sbjct: 183 ---------------------------------FSFFLYG--------LLSDDAFI---- 197
Query: 246 TITFLLKFQVPNGIGTILGIVQLALYFNYKETSGEESRDPLIVSY 290
VPNGIGT+LGI+QL LYF YK +S EE R+PLIVSY
Sbjct: 198 --------YVPNGIGTVLGIIQLVLYFYYKGSSSEECREPLIVSY 234
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461810|ref|XP_002285636.1| PREDICTED: bidirectional sugar transporter SWEET2 [Vitis vinifera] gi|302142809|emb|CBI20104.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356544144|ref|XP_003540515.1| PREDICTED: bidirectional sugar transporter SWEET2-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|351722328|ref|NP_001237496.1| uncharacterized protein LOC100305842 [Glycine max] gi|255626749|gb|ACU13719.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|388506414|gb|AFK41273.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|358348726|ref|XP_003638394.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] gi|355504329|gb|AES85532.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|217073964|gb|ACJ85342.1| unknown [Medicago truncatula] gi|388495182|gb|AFK35657.1| unknown [Medicago truncatula] gi|388517353|gb|AFK46738.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|358343709|ref|XP_003635940.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] gi|355501875|gb|AES83078.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] gi|388509868|gb|AFK43000.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|255639413|gb|ACU20002.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|388521553|gb|AFK48838.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 291 | ||||||
| TAIR|locus:2099362 | 236 | SWEET2 "AT3G14770" [Arabidopsi | 0.652 | 0.805 | 0.621 | 2.1e-61 | |
| UNIPROTKB|A2WR31 | 243 | SWEET2A "Bidirectional sugar t | 0.625 | 0.748 | 0.565 | 3.3e-59 | |
| UNIPROTKB|Q5JJY5 | 243 | SWEET2A "Bidirectional sugar t | 0.625 | 0.748 | 0.565 | 3.3e-59 | |
| UNIPROTKB|Q8RZQ8 | 273 | SWEET1A "Bidirectional sugar t | 0.625 | 0.666 | 0.461 | 3.3e-47 | |
| TAIR|locus:2026997 | 247 | SWEET1 [Arabidopsis thaliana ( | 0.625 | 0.736 | 0.434 | 5.3e-47 | |
| UNIPROTKB|B8AYH1 | 261 | SWEET1B "Bidirectional sugar t | 0.625 | 0.697 | 0.437 | 3.3e-45 | |
| UNIPROTKB|Q60EC2 | 261 | SWEET1B "Bidirectional sugar t | 0.625 | 0.697 | 0.437 | 3.3e-45 | |
| UNIPROTKB|B8A833 | 230 | SWEET2B "Bidirectional sugar t | 0.628 | 0.795 | 0.5 | 8.1e-44 | |
| UNIPROTKB|Q5N8J1 | 230 | SWEET2B "Bidirectional sugar t | 0.628 | 0.795 | 0.5 | 8.1e-44 | |
| TAIR|locus:2033319 | 261 | SWEET6 [Arabidopsis thaliana ( | 0.731 | 0.816 | 0.331 | 9.3e-38 |
| TAIR|locus:2099362 SWEET2 "AT3G14770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 118/190 (62%), Positives = 144/190 (75%)
Query: 9 ALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGT 68
+L++ KD GIAGNIFAFGLFVSP+PTFRRI+RN STE+FSGLPY+YALLNCLI +WYGT
Sbjct: 9 SLSMCKDVAGIAGNIFAFGLFVSPMPTFRRIMRNKSTEQFSGLPYIYALLNCLICLWYGT 68
Query: 69 PLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQ 128
P +S N ++ TVNS+GA FQL YIILFI +T+K K++MLGLL V + +IVA SLQ
Sbjct: 69 PFISHSNAMLMTVNSVGATFQLCYIILFIMHTDKKNKMKMLGLLFVVFAVVGVIVAGSLQ 128
Query: 129 IVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYXXXXXXXXXXXXXAY 188
I + +R FVG LSC +L+SMFASPLF+INLVI+TKSVEFMPFY Y
Sbjct: 129 IPDQLTRWYFVGFLSCGSLVSMFASPLFVINLVIRTKSVEFMPFYLSLSTFLMSASFLLY 188
Query: 189 GIMNWDPFIY 198
G+ N D F+Y
Sbjct: 189 GLFNSDAFVY 198
|
|
| UNIPROTKB|A2WR31 SWEET2A "Bidirectional sugar transporter SWEET2a" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5JJY5 SWEET2A "Bidirectional sugar transporter SWEET2a" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8RZQ8 SWEET1A "Bidirectional sugar transporter SWEET1a" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2026997 SWEET1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B8AYH1 SWEET1B "Bidirectional sugar transporter SWEET1b" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q60EC2 SWEET1B "Bidirectional sugar transporter SWEET1b" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B8A833 SWEET2B "Bidirectional sugar transporter SWEET2b" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5N8J1 SWEET2B "Bidirectional sugar transporter SWEET2b" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2033319 SWEET6 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00027922001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (235 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 291 | |||
| pfam03083 | 87 | pfam03083, MtN3_slv, Sugar efflux transporter for | 2e-14 | |
| pfam03083 | 87 | pfam03083, MtN3_slv, Sugar efflux transporter for | 9e-09 |
| >gnl|CDD|202529 pfam03083, MtN3_slv, Sugar efflux transporter for intercellular exchange | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-14
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 17 VGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNI 76
+G+ +F+ +F+SP+ R++I+ S E LP++ LL+ + + YG + +
Sbjct: 3 LGLLCVVFSVAVFLSPLSILRKVIKTKSVEGMPFLPFLAGLLSASLWLLYG---LLKKDG 59
Query: 77 LVTTVNSIGAAFQLVYIILFITYTEKDK 104
+ N +G +Y+ILFI Y K
Sbjct: 60 YIIIPNGVGCVLGTIYLILFIIYPPKKA 87
|
This family includes proteins such as drosophila saliva, MtN3 involved in root nodule development and a protein involved in activation and expression of recombination activation genes (RAGs). Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This family contains a region of two transmembrane helices that is found in two copies in most members of the family. This family also contains specific sugar efflux transporters that are essential for the maintenance of animal blood glucose levels, plant nectar production, and plant seed and pollen development. In many organisims it meditaes gluose transport; in Arabidopsis it is necessary for pollen viability; and two of the rice homologues are specifically exploited by bacterial pathogens for virulence by means of direct binding of a bacterial effector to the SWEET promoter. Length = 87 |
| >gnl|CDD|202529 pfam03083, MtN3_slv, Sugar efflux transporter for intercellular exchange | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 291 | |||
| KOG1623 | 243 | consensus Multitransmembrane protein [General func | 100.0 | |
| PF03083 | 87 | MtN3_slv: Sugar efflux transporter for intercellul | 99.82 | |
| PF03083 | 87 | MtN3_slv: Sugar efflux transporter for intercellul | 99.8 | |
| KOG1623 | 243 | consensus Multitransmembrane protein [General func | 99.43 | |
| COG4095 | 89 | Uncharacterized conserved protein [Function unknow | 99.11 | |
| COG4095 | 89 | Uncharacterized conserved protein [Function unknow | 98.88 | |
| TIGR00951 | 220 | 2A43 Lysosomal Cystine Transporter. | 98.25 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 97.79 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 97.59 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 95.83 | |
| KOG3211 | 230 | consensus Predicted endoplasmic reticulum membrane | 95.46 | |
| KOG2913 | 260 | consensus Predicted membrane protein [Function unk | 95.25 | |
| smart00679 | 32 | CTNS Repeated motif present between transmembrane | 92.75 | |
| TIGR00951 | 220 | 2A43 Lysosomal Cystine Transporter. | 89.53 | |
| PHA02246 | 192 | hypothetical protein | 88.03 | |
| smart00679 | 32 | CTNS Repeated motif present between transmembrane | 85.17 | |
| PF03650 | 119 | MPC: Uncharacterised protein family (UPF0041); Int | 85.15 | |
| KOG1589 | 118 | consensus Uncharacterized conserved protein [Funct | 82.99 | |
| PF10688 | 163 | Imp-YgjV: Bacterial inner membrane protein; InterP | 82.23 |
| >KOG1623 consensus Multitransmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=340.93 Aligned_cols=211 Identities=44% Similarity=0.745 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHH
Q 022823 11 TVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQL 90 (291)
Q Consensus 11 ~~~~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~ 90 (291)
+...+.+|..|.++++++|++|+|+++||+|+||+|++|..||+++.+||.+|+.|| ++.+|+..++.+|++|+++++
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999 666634589999999999999
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhHHHHHHHHhhchHHHHHHHHhcCCcccc
Q 022823 91 VYIILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFM 170 (291)
Q Consensus 91 ~yl~vf~~y~~~k~r~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~m 170 (291)
+|+..|+.|+++|++.+..... .+.++...+++.....++++.+.+.+|.+|.+++++||+|||..+|+||||||+|+|
T Consensus 81 ~Yi~~f~~ya~~k~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~m 159 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVKIVLAL-VLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYM 159 (243)
T ss_pred HHHHHHheecCchheeEeeehH-HHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeee
Confidence 9999999999988844322111 111222222344455667777899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhcccCCceeEeeccccccchhhheeceeeeeEEeecccccchhhHHhhhhcccCccceeehh
Q 022823 171 PFYLSLSTFLMSTSFLAYGIMNWDPFIYVWFLLPSHFSLLILFGVCFFFCFMLYNIQTVSLQSLLLQKKVICPLVTITFL 250 (291)
Q Consensus 171 p~~l~l~~~ln~~lW~~YGll~~D~fI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
|++++++.++++.+|++||++++|.|+.
T Consensus 160 Pf~Ls~a~fl~a~~W~lYGlli~D~~Ia---------------------------------------------------- 187 (243)
T KOG1623|consen 160 PFPLSFALFLVAVQWLLYGLLIKDFFIA---------------------------------------------------- 187 (243)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCeEEE----------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred hhcccCchhHHHHHHHHhhheeeecCCCCC
Q 022823 251 LKFQVPNGIGTILGIVQLALYFNYKETSGE 280 (291)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (291)
+||++|.++|++||.||+.||+++.+
T Consensus 188 ----ipN~iG~~l~~~QL~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 188 ----IPNVLGFLLGLIQLILYFKYPKTTEK 213 (243)
T ss_pred ----cccHHHHHHHHHHHHHhhhcCCCccc
Confidence 99999999999999999999987744
|
|
| >PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) [] | Back alignment and domain information |
|---|
| >PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) [] | Back alignment and domain information |
|---|
| >KOG1623 consensus Multitransmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG4095 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG4095 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00951 2A43 Lysosomal Cystine Transporter | Back alignment and domain information |
|---|
| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
|---|
| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
|---|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
| >KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2913 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins | Back alignment and domain information |
|---|
| >TIGR00951 2A43 Lysosomal Cystine Transporter | Back alignment and domain information |
|---|
| >PHA02246 hypothetical protein | Back alignment and domain information |
|---|
| >smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins | Back alignment and domain information |
|---|
| >PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1589 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 291 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 2e-04
Identities = 61/367 (16%), Positives = 113/367 (30%), Gaps = 134/367 (36%)
Query: 36 FRRIIRNHSTEEFSGLPYVYALLNCLITM---WYGTPLVSADN---ILVTT-----VNSI 84
RR++++ PY NCL+ + + + IL+TT + +
Sbjct: 234 LRRLLKSK--------PYE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 85 GAAFQLVYII--------------LFITYTE---KDKKVRMLG---LLLAVIGI------ 118
AA + L + Y + +D +L L++I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 119 -------------FSIIVAVSLQIVNPFS-RQMFVGLLSCA----------ALISMF--- 151
+ I+ SL ++ P R+MF + L+S+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWFD 398
Query: 152 ---ASPLFIIN------LVIQ---TKSVEFMPFYLSLSTFLMSTSFL------AYGIM-- 191
+ + ++N LV + ++ YL L L + L Y I
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 192 --NWDPFI-----YVWFLLPSHFS------LLILFGVCFF-FCFMLYNIQ--------TV 229
+ D Y + + H + LF + F F F+ I+ +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 230 SLQSLLLQ----KKVICP-------LVT--ITFLLKFQVPNGIGTILGIVQLALYFNYKE 276
S+ + L Q K IC LV + FL K + ++++AL +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 277 TSGEESR 283
E +
Sbjct: 579 IFEEAHK 585
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00