Citrus Sinensis ID: 022829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSARNAGGSRGVNCQIERERI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccEEEEEEEEEEccEEEEcccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEEEEEEccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEEcccEEccccccccccccccccccccccccccEEEEEccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEcEEEEccc
Coil and Loop (DISEMBL)
mvkieegdmnhYLVKKcflsgmgplaaDTRILALHKNSCSSLIARARLDSFKIFANAVAKkcggnanirpawfgasrdeINEIVChgfsqcggdgarklgpmhgfgvqllpinssingvlssesdekgLRHILLCRVILGKmeviprgskqfhptslefdsgvdnlckpsrytvwscyMNSHIFVDYIVSFRVVCFSasaikttspwKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSArnaggsrgvncqiereri
Flexible Loop (DISEMBL)
mvkieegdmnhYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVCFSASaikttspwkgIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELrsarnaggsrgvncqiereri
Low Complexity Region (SEG)
MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSARNAGGSRGVNCQIERERI
Disordered region (IsUnstruct)
********MNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLS****EKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNEL*********************
Disordered Region (DISOPRED)
MVKIE**DMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFK****************RPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGV******EKGLRHILLCRVILGK****************EFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTK***************************
Disordered Region (DISEMBL)
MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSARNAGGSRGVNCQIERERI
Disordered Region (DISPRO)
MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGS******SLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR******GSRGVNC*I*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSARNAGGSRGVNCQIERERI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9ZUD9	323	Probable inactive poly [A	yes	no	0.920	0.829	0.428	2e-61
O64592	305	Probable inactive poly [A	no	no	0.896	0.855	0.404	4e-53
Q9FJJ3	309	Probable inactive poly [A	no	no	0.876	0.825	0.356	4e-43
Q9STU1	316	Probable inactive poly [A	no	no	0.762	0.702	0.322	1e-30
Q8RY59	589	Inactive poly [ADP-ribose	no	no	0.893	0.441	0.283	3e-28
O82289	568	Probable inactive poly [A	no	no	0.652	0.334	0.336	9e-23

>sp|Q9ZUD9|SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/273 (42%), Positives = 170/273 (62%), Gaps = 5/273 (1%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCS-SLIARARLDSFKIFANAVA 59
           ++ + EG+  H ++K C LSGMG +++DT I+ + KNS    +  RA+  +F+IF +AVA
Sbjct: 45  LILLGEGNPEHDVIKTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVA 104

Query: 60  KKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGV 119
           +K GG+AN++  W+  SRDEI  I+ +GFS          G  HG G+ L+P   S+   
Sbjct: 105 RKHGGDANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAA 164

Query: 120 LSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYM 179
            ++E DE+GLR++LLCRVILGK E+I  GSKQ +P+S EFDSGVD+L  P  Y +WSC M
Sbjct: 165 SATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNM 224

Query: 180 NSHIFVDYIVSFRVVCFSAS----AIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYND 235
           NS I   YIVSFR      S    A + +SPW    +LM++ S  + PS+M L+ + Y+D
Sbjct: 225 NSCILPSYIVSFRSPRLRVSRGGFASRPSSPWVSFASLMSMLSTSMDPSRMNLIIRTYDD 284

Query: 236 LQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMN 268
            + +KI   Q V  +++V GD LL  + K + N
Sbjct: 285 FRKRKIRRDQLVRKMREVAGDNLLAEIIKNHKN 317

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.
Arabidopsis thaliana (taxid: 3702)

>sp|O64592|SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis thaliana GN=SRO3 PE=1 SV=2

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/262 (40%), Positives = 152/262 (58%), Gaps = 1/262 (0%)

Query: 4   IEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIA-RARLDSFKIFANAVAKKC 62
           + E    H L+K CFLSGMG  A +T I+ + K     LI  +A+   FK+F  A+ +K 
Sbjct: 40  LREATFEHNLIKNCFLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKN 99

Query: 63  GGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSS 122
            G ANIR  W+  S++EI+ ++ +GFS             HG G+ L+    S+   L  
Sbjct: 100 NGYANIRYGWYSGSKEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVG 159

Query: 123 ESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSH 182
           E DE+G+++ILLCRVILGK E I  GSKQ +P+S +FDSGVDNL  P +Y +WSC MNS+
Sbjct: 160 EGDEEGIKNILLCRVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSY 219

Query: 183 IFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKIT 242
           I   YIVSF+         +  SP      LM+I S+ L  ++M L+   Y+D + +K+ 
Sbjct: 220 ILPTYIVSFKSHLLRGLIGRARSPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLR 279

Query: 243 SQQFVMNLKQVTGDKLLFTVTK 264
            +Q V  +++V GD LLF + K
Sbjct: 280 REQLVRKIREVVGDNLLFKILK 301

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJJ3|SRO5_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis thaliana GN=SRO5 PE=1 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/269 (35%), Positives = 161/269 (59%), Gaps = 14/269 (5%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           ++++ EGD  H L+ +   SG+G      +IL++ +N   ++ +RA+L +F++F  AV  
Sbjct: 42  LMELLEGDKAHDLIYRNCKSGLG---DQCQILSVLRNGFRNVGSRAKLKTFQVFQEAVQM 98

Query: 61  KCGGN--ANIRPAWFGASRDEINEIVCHGFSQ-CGGDGARKLGPMHGFGVQLLPINSSIN 117
           K GG+  A ++  W   S+ E+  I  +GFS+    DG+       G G+ L P NS ++
Sbjct: 99  KHGGDGGAKVKYGWCSVSKHELKTIFEYGFSEPLRNDGS------FGRGLYLSPDNSPLD 152

Query: 118 GVLSSESD-EKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWS 176
            +  S S+ E G+R +LLCRV+LGK E++P+GS +  P+S EFDSGVD+L    +Y VWS
Sbjct: 153 CLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWS 212

Query: 177 CYMNSHIFVDYIVSFRV-VCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYND 235
            +MN+H+  +++V  +     + S  +  SPW     L+   S+FL PS++ ++ K+Y D
Sbjct: 213 THMNTHVLPEFLVCIKAPFNLTRSPKRLRSPWMAFPVLIKALSKFLPPSQILVIQKHYKD 272

Query: 236 LQNQKITSQQFVMNLKQVTGDKLLFTVTK 264
            QN++IT  + +  ++ +TGDKLL  + K
Sbjct: 273 QQNRRITRSELIQRVRSITGDKLLVHIIK 301

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STU1|SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO4 OS=Arabidopsis thaliana GN=SRO4 PE=2 SV=2

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 141/254 (55%), Gaps = 32/254 (12%)

Query: 25  LAADTRILALHKNSCSSLIARARLDSFKIFANAVAKK---CGGN-------ANIRPAWFG 74
           L+    I+++ KN   + + +A+L +F+I+A +VAKK   C GN       A ++    G
Sbjct: 71  LSNQFEIVSILKNGFQTPLGQAKLKAFQIYAESVAKKSGSCCGNKAAVAEAARVKYGCCG 130

Query: 75  ASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILL 134
             ++E+  I+ +GFS    + A  L P +       P+   I+   SS  +E G+  +L 
Sbjct: 131 VEKEELKAILMYGFS----NNALCLSPDNA------PLQCMIDP--SSSCNEDGISFLLF 178

Query: 135 CRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVV 194
            R+I+GK EV+   S Q +P+S+EFDSGVD+L  P++Y +WS +MN+H+  ++     VV
Sbjct: 179 SRIIMGKSEVVCSTS-QSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEF-----VV 232

Query: 195 CFSASAI----KTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNL 250
           C    +I       SPW     L+   S+FL+ S++ L+ K+Y + Q+++I+  + +  L
Sbjct: 233 CIKTPSILKRKNPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRL 292

Query: 251 KQVTGDKLLFTVTK 264
           + +TGD LL  + K
Sbjct: 293 RSITGDSLLVQIIK 306

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 136/310 (43%), Gaps = 50/310 (16%)

Query: 14  VKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWF 73
           VKK F  G   L     +  L     SS IA ARL  F+     + KK  G+AN+R AW 
Sbjct: 278 VKKMFAVGTASLG---HVPVLDVGRFSSEIAEARLALFQKQVE-ITKKHRGDANVRYAWL 333

Query: 74  GASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHIL 133
            A R+ ++ ++  G    GG   RK   ++G G+ L   +         + DE G+R+++
Sbjct: 334 PAKREVLSAVMMQGLG-VGGAFIRK--SIYGVGIHLTAADCPYFSARYCDVDENGVRYMV 390

Query: 134 LCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRV 193
           LCRVI+G ME++     QF     E+D+GVD++  P  Y VW+  MN+HIF +++V F++
Sbjct: 391 LCRVIMGNMELLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKL 450

Query: 194 V-------------------------------------------CFSASAIKTTSPWKGI 210
                                                          +S  +  SPW   
Sbjct: 451 SNLPNAEGNLIAKRDNSGVTLEGPKDLPPQLESNQGARGSGSANSVGSSTTRPKSPWMPF 510

Query: 211 QTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNEL 270
            TL A  S  +  + M L+   Y  L+++K+T  +FV  L+ + GD LL +      N+ 
Sbjct: 511 PTLFAAISHKVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTLQNQP 570

Query: 271 RSARNAGGSR 280
           +S    G  R
Sbjct: 571 KSKEIPGSIR 580

Inactive ADP-ribosyltransferase that functions with SRO1 to regulates oxidative stress, hormonal and developmental responses. Required for embryogenesis, vegetative and reproductive development, and abiotic stress responses. May regulates several stress-responsive genes. Seems to have has a larger developmental role than SRO1. Does not bind NAD in vitro.

Arabidopsis thaliana (taxid: 3702)

>sp|O82289|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis thaliana GN=SRO1 PE=1 SV=2

 Score =  107 bits (268), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 9/199 (4%)

Query: 2   VKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKK 61
           VK  E +++   VK+ F  G   L     + +L     SS IA+ARL  F+  A+ + KK
Sbjct: 262 VKPAEEELDKDAVKQMFALGAATLG---HVESLDVYQFSSEIAKARLSLFQKQAD-ITKK 317

Query: 62  CGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLS 121
             G+ANIR AW  A ++ ++ ++ HG    G  GA     M+G GV     N        
Sbjct: 318 HRGDANIRYAWVPAKKEVLSAVMMHGL---GVGGAFIKKSMYGVGVHA--ANCPYFSARY 372

Query: 122 SESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNS 181
            + D+ G+RH++LCRVI+G ME +   + Q+     E+D+GVD++  P  Y +W+  MN+
Sbjct: 373 CDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPKHYLIWNMNMNT 432

Query: 182 HIFVDYIVSFRVVCFSASA 200
           HI+ +++VSF++   +A  
Sbjct: 433 HIYPEFVVSFKLSIPNAEG 451

Probable inactive ADP-ribosyltransferase that functions with RCD1 to regulates oxidative stress, hormonal and developmental responses. May regulates some stress-responsive genes. Seems to have has a smaller developmental role than R.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
359473190	325	PREDICTED: probable inactive poly [ADP-r	0.903	0.809	0.492	2e-73
297739039	260	unnamed protein product [Vitis vinifera]	0.841	0.942	0.492	2e-66
297733785	344	unnamed protein product [Vitis vinifera]	0.934	0.790	0.432	6e-66
147790178	341	hypothetical protein VITISV_022357 [Viti	0.934	0.797	0.432	1e-65
225457038	310	PREDICTED: probable inactive poly [ADP-r	0.886	0.832	0.450	2e-65
255568806	327	conserved hypothetical protein [Ricinus	0.910	0.810	0.441	5e-63
255540665	374	conserved hypothetical protein [Ricinus	0.948	0.737	0.407	1e-60
224121690	282	predicted protein [Populus trichocarpa]	0.896	0.925	0.437	2e-60
224135807	291	predicted protein [Populus trichocarpa]	0.917	0.917	0.421	4e-60
15220787	323	RCD one 2-like protein [Arabidopsis thal	0.920	0.829	0.428	1e-59

>gi|359473190|ref|XP_003631261.1| PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2-like [Vitis vinifera]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/272 (49%), Positives = 181/272 (66%), Gaps = 9/272 (3%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           M++++EG+  H  +KK F SGMGP+   T ++++HKNS S+L  +AR +SF+IF+ AV K
Sbjct: 45  MIRVDEGNTEHDAIKKMFFSGMGPIGKGTDVVSIHKNSHSTLTGQARFESFRIFSQAVGK 104

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           KCGG+ANI  AW+GASR EI +I+ HGFS+       K G ++GFGV L     SI+  L
Sbjct: 105 KCGGDANINYAWYGASRGEIYDIISHGFSRLQRP---KAGELYGFGVYLSSAKFSIDCAL 161

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMN 180
           SS  DE GLRH++LCRVILG ME +  GS+QFHP S E+DSGVD++  P RY +WS YMN
Sbjct: 162 SSAEDENGLRHVMLCRVILGNMETVCAGSQQFHPCSREYDSGVDDVSAPRRYIIWSAYMN 221

Query: 181 SHIFVDYIVSFRVVC------FSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYN 234
           SHI   YI+SFR           A+ +K TSPW    TL+++ S+ L P KM  ++KY+ 
Sbjct: 222 SHILPSYIISFRAPLKGVPRRIQANLVKPTSPWMKFHTLLSVLSKVLPPHKMTQISKYHC 281

Query: 235 DLQNQKITSQQFVMNLKQVTGDKLLFTVTKFY 266
           D   +KIT QQ V  L+Q+ GD++L  V K Y
Sbjct: 282 DFHRKKITRQQLVKRLRQIAGDEMLTRVIKLY 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|297739039|emb|CBI28528.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 167/254 (65%), Gaps = 9/254 (3%)

Query: 22  MGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEIN 81
           MGP+   T ++++HKNS S+L  +AR +SF+IF+ AV KKCGG+ANI  AW+GASR EI 
Sbjct: 1   MGPIGKGTDVVSIHKNSHSTLTGQARFESFRIFSQAVGKKCGGDANINYAWYGASRGEIY 60

Query: 82  EIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGK 141
           +I+ HGFS+       K G ++GFGV L     SI+  LSS  DE GLRH++LCRVILG 
Sbjct: 61  DIISHGFSRLQRP---KAGELYGFGVYLSSAKFSIDCALSSAEDENGLRHVMLCRVILGN 117

Query: 142 MEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVC------ 195
           ME +  GS+QFHP S E+DSGVD++  P RY +WS YMNSHI   YI+SFR         
Sbjct: 118 METVCAGSQQFHPCSREYDSGVDDVSAPRRYIIWSAYMNSHILPSYIISFRAPLKGVPRR 177

Query: 196 FSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG 255
             A+ +K TSPW    TL+++ S+ L P KM  ++KY+ D   +KIT QQ V  L+Q+ G
Sbjct: 178 IQANLVKPTSPWMKFHTLLSVLSKVLPPHKMTQISKYHCDFHRKKITRQQLVKRLRQIAG 237

Query: 256 DKLLFTVTKFYMNE 269
           D++L  V K Y  +
Sbjct: 238 DEMLTRVIKLYRTK 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733785|emb|CBI15032.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (655), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 124/287 (43%), Positives = 183/287 (63%), Gaps = 15/287 (5%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           +V+++E +  H +++K  +SG+GPL   T ++ +H+N  +S+I++ARL SF+IF  AV K
Sbjct: 40  LVRLDEDEKLHRIIEKALVSGLGPLRQHTSVVDIHRNGYASVISQARLQSFRIFGRAVEK 99

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           KC GNAN++  W+ AS+DEI  I+ HGFS   G        ++G GV L P +SSI  + 
Sbjct: 100 KCEGNANVKFGWYSASKDEIGRIISHGFSHSNG--------LYGCGVYLYPHHSSIESMK 151

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMN 180
           S   DE GLRH+LLCRVILGKMEV+  GS+Q+HP+S +FDSGVDNL  P +Y VWS +MN
Sbjct: 152 SCVVDEDGLRHLLLCRVILGKMEVVHPGSQQYHPSSEDFDSGVDNLPAPKKYIVWSTHMN 211

Query: 181 SHIFVDYIVSFRV-------VCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYY 233
           +HI  +Y+V+FR        +    S  K TSPW    TL+++ S+FL P  + L+AK++
Sbjct: 212 THILPEYVVTFRAPPCLKGFLNTQGSLKKPTSPWMPFTTLISVLSKFLPPQSVNLIAKHH 271

Query: 234 NDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSARNAGGSR 280
            D +  KI   + +  ++Q+ GDKLL  V K +  +  ++ N    R
Sbjct: 272 RDHRENKIPRHELIRLVRQIAGDKLLTVVIKSHRAKQLNSTNGSHQR 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790178|emb|CAN67883.1| hypothetical protein VITISV_022357 [Vitis vinifera]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/287 (43%), Positives = 183/287 (63%), Gaps = 15/287 (5%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           +V+++E +  H +++K  +SG+GPL   T ++ +H+N  +S+I++ARL SF+IF  AV K
Sbjct: 37  LVRLDEDEKLHRIIEKAXVSGLGPLRQHTSVVDIHRNGYASVISQARLQSFRIFGRAVEK 96

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           KC GNAN++  W+ AS+DEI  I+ HGFS   G        ++G GV L P +SSI  + 
Sbjct: 97  KCEGNANVKFGWYSASKDEIGRIISHGFSHSNG--------LYGCGVYLYPHHSSIESMK 148

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMN 180
           S   DE GLRH+LLCRVILGKMEV+  GS+Q+HP+S +FDSGVDNL  P +Y VWS +MN
Sbjct: 149 SCVVDEDGLRHLLLCRVILGKMEVVHPGSQQYHPSSEDFDSGVDNLPAPKKYIVWSTHMN 208

Query: 181 SHIFVDYIVSFRV-------VCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYY 233
           +HI  +Y+V+FR        +    S  K TSPW    TL+++ S+FL P  + L+AK++
Sbjct: 209 THILPEYVVTFRAPPCLKGFLNTQGSLKKPTSPWMPFTTLISVLSKFLPPQSVNLIAKHH 268

Query: 234 NDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSARNAGGSR 280
            D +  KI   + +  ++Q+ GDKLL  V K +  +  ++ N    R
Sbjct: 269 RDHRENKIPRHELIRLVRQIAGDKLLTVVIKSHRAKQLNSTNGSHQR 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457038|ref|XP_002282800.1| PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 [Vitis vinifera]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/273 (45%), Positives = 178/273 (65%), Gaps = 15/273 (5%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           +V+++E +  H +++K  +SG+GPL   T ++ +H+N  +S+I++ARL SF+IF  AV K
Sbjct: 40  LVRLDEDEKLHRIIEKALVSGLGPLRQHTSVVDIHRNGYASVISQARLQSFRIFGRAVEK 99

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           KC GNAN++  W+ AS+DEI  I+ HGFS   G        ++G GV L P +SSI  + 
Sbjct: 100 KCEGNANVKFGWYSASKDEIGRIISHGFSHSNG--------LYGCGVYLYPHHSSIESMK 151

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMN 180
           S   DE GLRH+LLCRVILGKMEV+  GS+Q+HP+S +FDSGVDNL  P +Y VWS +MN
Sbjct: 152 SCVVDEDGLRHLLLCRVILGKMEVVHPGSQQYHPSSEDFDSGVDNLPAPKKYIVWSTHMN 211

Query: 181 SHIFVDYIVSFRV-VCF------SASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYY 233
           +HI  +Y+V+FR   C         S  K TSPW    TL+++ S+FL P  + L+AK++
Sbjct: 212 THILPEYVVTFRAPPCLKGFLNTQGSLKKPTSPWMPFTTLISVLSKFLPPQSVNLIAKHH 271

Query: 234 NDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFY 266
            D +  KI   + +  ++Q+ GDKLL  V K +
Sbjct: 272 RDHRENKIPRHELIRLVRQIAGDKLLTVVIKSH 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|255568806|ref|XP_002525374.1| conserved hypothetical protein [Ricinus communis] gi|223535337|gb|EEF37012.1| conserved hypothetical protein [Ricinus communis]

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 121/274 (44%), Positives = 173/274 (63%), Gaps = 9/274 (3%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           MVK++EG  ++  +K+ F+ GMG  A  T I+A+HKN  S    +AR  SF+IF  AV +
Sbjct: 53  MVKVQEGSHDYKTIKEVFVGGMGTHANHTNIVAIHKNVVSDPARKARWLSFQIFTRAVGE 112

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           K G N N++ AW+G+SR+E+ +I+  GF++C      +L   HG G+ L P    I+ + 
Sbjct: 113 KSGNNGNVQFAWYGSSREELCQIISRGFNRCNEASTDQL---HGIGIHLSPAGFPIDCIG 169

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMN 180
           SS  D  GL H+LLCRVILGKME IP  SKQF P S EFDSGVDNL KP RY +W+ +MN
Sbjct: 170 SSVVDANGLGHMLLCRVILGKMEEIPADSKQFQPNSTEFDSGVDNLHKPRRYIIWNAFMN 229

Query: 181 SHIFVDYIVSFRVVCFSA------SAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYN 234
           SHIF  YI+SF+   F+         ++ TSPW     L+ + S+ L PSKMAL++K+Y+
Sbjct: 230 SHIFPTYIISFKAPSFNGIKRNQLRKLRPTSPWLSFPVLLHLLSKCLEPSKMALISKHYD 289

Query: 235 DLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMN 268
           D +  KI+    +  ++Q++GD+LL  +   + N
Sbjct: 290 DFKKNKISRLLLIQRVRQISGDRLLVQIIGRHRN 323

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540665|ref|XP_002511397.1| conserved hypothetical protein [Ricinus communis] gi|223550512|gb|EEF51999.1| conserved hypothetical protein [Ricinus communis]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/282 (40%), Positives = 179/282 (63%), Gaps = 6/282 (2%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           +V++ EGD  + L+K+ F+SG+G L     ++A+H+N  S ++ +AR+ SF+IF  A+  
Sbjct: 71  LVRLSEGDRVNDLIKRRFISGLGLLGKQATVVAIHRNKYSGIVGQARMQSFQIFTKAMED 130

Query: 61  KCGGNANIRPAWFGAS-RDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGV 119
           KCGGNAN++ AWFGAS RD+I  I+ HGF +   D       ++G G+ L P +S +  V
Sbjct: 131 KCGGNANVKYAWFGASSRDDICNIMTHGFGRQINDN----NGLYGCGIYLSPDDSPLESV 186

Query: 120 LSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYM 179
            +   D+ GLRH+LLCRVILG+ E +  GS+Q HP+S +FDSG+D    P +Y VWS YM
Sbjct: 187 KNLRVDKDGLRHLLLCRVILGRSEEVHPGSEQCHPSSEKFDSGIDTFLSPKKYIVWSTYM 246

Query: 180 NSHIFVDYIVSFRV-VCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQN 238
           N+HIF ++++SF+   C   S    TSPW     L++  S FL P+ + LL K++ D + 
Sbjct: 247 NTHIFPEFVISFKAPCCLKESPGVPTSPWMPFPALISALSEFLPPATIGLLDKHHKDHRE 306

Query: 239 QKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSARNAGGSR 280
           +KI+ Q+ +  ++Q+ GD+LL  V K +  +++S   A  S+
Sbjct: 307 KKISRQELIQRVRQIAGDRLLIAVIKSFRTKVKSEYQAALSK 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121690|ref|XP_002318648.1| predicted protein [Populus trichocarpa] gi|222859321|gb|EEE96868.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/265 (43%), Positives = 172/265 (64%), Gaps = 4/265 (1%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           +V++ EGD  H L+K+ F+SG+G L     ++A+H+NS S ++ +AR+ SF+IFA A+ K
Sbjct: 20  LVRLFEGDRVHDLIKRRFVSGLGLLGKQATVVAIHRNSYSGVLEQARMQSFQIFAKAMEK 79

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           KCGG+AN++  W+G +RDEI EIV HGFS    D +  L   +G G+ L P +S +  V 
Sbjct: 80  KCGGDANVKFGWYGGTRDEICEIVKHGFSARMIDNSNGL---YGCGIYLSPDDSPVECVK 136

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMN 180
               D+ GLRH+LLCR+ILGK EV+  GS Q  P+S EFDSG+DNL  P +Y +WS +MN
Sbjct: 137 KLSVDKDGLRHLLLCRLILGKSEVVHPGSDQCRPSSEEFDSGMDNLTSPKKYILWSTHMN 196

Query: 181 SHIFVDYIVSFRVVC-FSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQ 239
           +HI  ++++SFR       S  +  SPW     L++  S+FL P+   L+ KY+ D + +
Sbjct: 197 THILPEFVISFRAPSRLKESLRRPNSPWMPFPALISALSKFLPPTTTKLIIKYHRDHREK 256

Query: 240 KITSQQFVMNLKQVTGDKLLFTVTK 264
           KI+ QQ +  +++  GDKLL +V K
Sbjct: 257 KISRQQLIQQVRKTVGDKLLISVIK 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135807|ref|XP_002322165.1| predicted protein [Populus trichocarpa] gi|222869161|gb|EEF06292.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 176/273 (64%), Gaps = 6/273 (2%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           ++++ EGD  H L+K+ F+SG+G L     ++A+H+N+ S ++ +AR+ SF+I A A+ K
Sbjct: 20  LIRLFEGDRVHDLIKQRFVSGLGLLGKKATVVAIHRNTYSGVLEQARMQSFQIIAKAMEK 79

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           KCGG+AN++  W+G +RDEI EI+ HGFS    D +  L   +G G+ L P +S +  V 
Sbjct: 80  KCGGDANVKFGWYGGTRDEICEIMKHGFSARMIDNSNGL---YGSGIYLSPDDSPVECVK 136

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMN 180
                + GLRH+LLCRVILGK EV+  GS Q+HP+S EFDSG+DNL  P +Y VWS  MN
Sbjct: 137 KLSVGKDGLRHMLLCRVILGKAEVVHPGSDQYHPSSDEFDSGMDNLSSPKKYIVWSARMN 196

Query: 181 SHIFVDYIVSFRVVCF---SASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQ 237
           +HI  +Y++SF         +S I  TSPW    +L++  S+FL P+   L+ KYY   +
Sbjct: 197 THILPEYVISFSAPSSLKGGSSTILPTSPWMPFPSLISALSKFLPPTTTKLIIKYYRAHR 256

Query: 238 NQKITSQQFVMNLKQVTGDKLLFTVTKFYMNEL 270
            +KI+ Q+ +  ++++ GDKLL +V K +  ++
Sbjct: 257 AKKISRQELIQQVRKIVGDKLLISVIKSFRTKV 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220787|ref|NP_173769.1| RCD one 2-like protein [Arabidopsis thaliana] gi|75272070|sp|Q9ZUD9.1|SRO2_ARATH RecName: Full=Probable inactive poly [ADP-ribose] polymerase SRO2; AltName: Full=Protein SIMILAR TO RCD ONE 2 gi|4056438|gb|AAC98011.1| F5O8.11 [Arabidopsis thaliana] gi|63003772|gb|AAY25415.1| At1g23550 [Arabidopsis thaliana] gi|332192281|gb|AEE30402.1| RCD one 2-like protein [Arabidopsis thaliana]

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/273 (42%), Positives = 170/273 (62%), Gaps = 5/273 (1%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCS-SLIARARLDSFKIFANAVA 59
           ++ + EG+  H ++K C LSGMG +++DT I+ + KNS    +  RA+  +F+IF +AVA
Sbjct: 45  LILLGEGNPEHDVIKTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVA 104

Query: 60  KKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGV 119
           +K GG+AN++  W+  SRDEI  I+ +GFS          G  HG G+ L+P   S+   
Sbjct: 105 RKHGGDANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAA 164

Query: 120 LSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYM 179
            ++E DE+GLR++LLCRVILGK E+I  GSKQ +P+S EFDSGVD+L  P  Y +WSC M
Sbjct: 165 SATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNM 224

Query: 180 NSHIFVDYIVSFRVVCFSAS----AIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYND 235
           NS I   YIVSFR      S    A + +SPW    +LM++ S  + PS+M L+ + Y+D
Sbjct: 225 NSCILPSYIVSFRSPRLRVSRGGFASRPSSPWVSFASLMSMLSTSMDPSRMNLIIRTYDD 284

Query: 236 LQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMN 268
            + +KI   Q V  +++V GD LL  + K + N
Sbjct: 285 FRKRKIRRDQLVRKMREVAGDNLLAEIIKNHKN 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2028879	323	SRO2 "similar to RCD one 2" [A	0.920	0.829	0.428	1.6e-56
TAIR|locus:2016159	305	SRO3 "similar to RCD one 3" [A	0.903	0.862	0.401	2e-49
TAIR|locus:2154084	309	SRO5 "similar to RCD one 5" [A	0.876	0.825	0.356	8.4e-42
TAIR|locus:2031700	589	RCD1 "RADICAL-INDUCED CELL DEA	0.591	0.292	0.364	4.4e-31
TAIR|locus:2100357	316	SRO4 "similar to RCD one 4" [A	0.859	0.791	0.298	4.9e-30
TAIR|locus:2062471	568	SRO1 "similar to RCD one 1" [A	0.628	0.322	0.343	9.6e-28

TAIR|locus:2028879 SRO2 "similar to RCD one 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 117/273 (42%), Positives = 170/273 (62%)

Query:     1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCS-SLIARARLDSFKIFANAVA 59
             ++ + EG+  H ++K C LSGMG +++DT I+ + KNS    +  RA+  +F+IF +AVA
Sbjct:    45 LILLGEGNPEHDVIKTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVA 104

Query:    60 KKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGV 119
             +K GG+AN++  W+  SRDEI  I+ +GFS          G  HG G+ L+P   S+   
Sbjct:   105 RKHGGDANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAA 164

Query:   120 LSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYM 179
              ++E DE+GLR++LLCRVILGK E+I  GSKQ +P+S EFDSGVD+L  P  Y +WSC M
Sbjct:   165 SATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNM 224

Query:   180 NSHIFVDYIVSFRVVCFSAS----AIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYND 235
             NS I   YIVSFR      S    A + +SPW    +LM++ S  + PS+M L+ + Y+D
Sbjct:   225 NSCILPSYIVSFRSPRLRVSRGGFASRPSSPWVSFASLMSMLSTSMDPSRMNLIIRTYDD 284

Query:   236 LQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMN 268
              + +KI   Q V  +++V GD LL  + K + N
Sbjct:   285 FRKRKIRRDQLVRKMREVAGDNLLAEIIKNHKN 317

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2016159 SRO3 "similar to RCD one 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 106/264 (40%), Positives = 153/264 (57%)

Query:     2 VKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIA-RARLDSFKIFANAVAK 60
             + + E    H L+K CFLSGMG  A +T I+ + K     LI  +A+   FK+F  A+ +
Sbjct:    38 ILLREATFEHNLIKNCFLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKR 97

Query:    61 KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
             K  G ANIR  W+  S++EI+ ++ +GFS             HG G+ L+    S+   L
Sbjct:    98 KNNGYANIRYGWYSGSKEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAAL 157

Query:   121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMN 180
               E DE+G+++ILLCRVILGK E I  GSKQ +P+S +FDSGVDNL  P +Y +WSC MN
Sbjct:   158 VGEGDEEGIKNILLCRVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMN 217

Query:   181 SHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQK 240
             S+I   YIVSF+         +  SP      LM+I S+ L  ++M L+   Y+D + +K
Sbjct:   218 SYILPTYIVSFKSHLLRGLIGRARSPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRK 277

Query:   241 ITSQQFVMNLKQVTGDKLLFTVTK 264
             +  +Q V  +++V GD LLF + K
Sbjct:   278 LRREQLVRKIREVVGDNLLFKILK 301

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2154084 SRO5 "similar to RCD one 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 96/269 (35%), Positives = 161/269 (59%)

Query:     1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
             ++++ EGD  H L+ +   SG+G      +IL++ +N   ++ +RA+L +F++F  AV  
Sbjct:    42 LMELLEGDKAHDLIYRNCKSGLGD---QCQILSVLRNGFRNVGSRAKLKTFQVFQEAVQM 98

Query:    61 KCGGN--ANIRPAWFGASRDEINEIVCHGFSQ-CGGDGARKLGPMHGFGVQLLPINSSIN 117
             K GG+  A ++  W   S+ E+  I  +GFS+    DG+       G G+ L P NS ++
Sbjct:    99 KHGGDGGAKVKYGWCSVSKHELKTIFEYGFSEPLRNDGS------FGRGLYLSPDNSPLD 152

Query:   118 GVLSSESD-EKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWS 176
              +  S S+ E G+R +LLCRV+LGK E++P+GS +  P+S EFDSGVD+L    +Y VWS
Sbjct:   153 CLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWS 212

Query:   177 CYMNSHIFVDYIVSFRVVC-FSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYND 235
              +MN+H+  +++V  +     + S  +  SPW     L+   S+FL PS++ ++ K+Y D
Sbjct:   213 THMNTHVLPEFLVCIKAPFNLTRSPKRLRSPWMAFPVLIKALSKFLPPSQILVIQKHYKD 272

Query:   236 LQNQKITSQQFVMNLKQVTGDKLLFTVTK 264
              QN++IT  + +  ++ +TGDKLL  + K
Sbjct:   273 QQNRRITRSELIQRVRSITGDKLLVHIIK 301

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2031700 RCD1 "RADICAL-INDUCED CELL DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 4.4e-31, Sum P(2) = 4.4e-31
 Identities = 66/181 (36%), Positives = 99/181 (54%)

Query:    14 VKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWF 73
             VKK F  G   L     +  L     SS IA ARL  F+     + KK  G+AN+R AW 
Sbjct:   278 VKKMFAVGTASLG---HVPVLDVGRFSSEIAEARLALFQKQVE-ITKKHRGDANVRYAWL 333

Query:    74 GASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHIL 133
              A R+ ++ ++  G    GG   RK   ++G G+ L   +         + DE G+R+++
Sbjct:   334 PAKREVLSAVMMQGLG-VGGAFIRK--SIYGVGIHLTAADCPYFSARYCDVDENGVRYMV 390

Query:   134 LCRVILGKMEVIPRGSK-QFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFR 192
             LCRVI+G ME++ RG K QF     E+D+GVD++  P  Y VW+  MN+HIF +++V F+
Sbjct:   391 LCRVIMGNMELL-RGDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFK 449

Query:   193 V 193
             +
Sbjct:   450 L 450

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0000303 "response to superoxide" evidence=RCA;IMP

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0012501 "programmed cell death" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0006809 "nitric oxide biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2100357 SRO4 "similar to RCD one 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 82/275 (29%), Positives = 149/275 (54%)

Query:     1 MVKIEEGDMNHYLV-KKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVA 59
             + ++ + D  + L+ + C       L+    I+++ KN   + + +A+L +F+I+A +VA
Sbjct:    46 LTELPKDDKVYELIYRHCQSKLTSHLSNQFEIVSILKNGFQTPLGQAKLKAFQIYAESVA 105

Query:    60 KK---CGGN-------ANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQL 109
             KK   C GN       A ++    G  ++E+  I+ +GFS    + A  L P +      
Sbjct:   106 KKSGSCCGNKAAVAEAARVKYGCCGVEKEELKAILMYGFS----NNALCLSPDNA----- 156

Query:   110 LPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKP 169
              P+   I+   SS  +E G+  +L  R+I+GK EV+   S Q +P+S+EFDSGVD+L  P
Sbjct:   157 -PLQCMIDP--SSSCNEDGISFLLFSRIIMGKSEVVCSTS-QSYPSSMEFDSGVDSLTSP 212

Query:   170 SRYTVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALL 229
             ++Y +WS +MN+H+  +++V  +            SPW     L+   S+FL+ S++ L+
Sbjct:   213 NKYIIWSTHMNTHVLPEFVVCIKTPSILKRK-NPKSPWISFPVLINSISKFLNQSQIRLI 271

Query:   230 AKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTK 264
              K+Y + Q+++I+  + +  L+ +TGD LL  + K
Sbjct:   272 HKHYKEHQDRRISRCELIQRLRSITGDSLLVQIIK 306

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2062471 SRO1 "similar to RCD one 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 9.6e-28, Sum P(2) = 9.6e-28
 Identities = 66/192 (34%), Positives = 107/192 (55%)

Query:     2 VKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKK 61
             VK  E +++   VK+ F  G   L     + +L     SS IA+ARL  F+  A+ + KK
Sbjct:   262 VKPAEEELDKDAVKQMFALGAATLG---HVESLDVYQFSSEIAKARLSLFQKQAD-ITKK 317

Query:    62 CGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLS 121
               G+ANIR AW  A ++ ++ ++ HG    GG   +K   M+G GV     N        
Sbjct:   318 HRGDANIRYAWVPAKKEVLSAVMMHGLG-VGGAFIKK--SMYGVGVHAA--NCPYFSARY 372

Query:   122 SESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNS 181
              + D+ G+RH++LCRVI+G ME +   + Q+     E+D+GVD++  P  Y +W+  MN+
Sbjct:   373 CDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPKHYLIWNMNMNT 432

Query:   182 HIFVDYIVSFRV 193
             HI+ +++VSF++
Sbjct:   433 HIYPEFVVSFKL 444

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUD9	SRO2_ARATH	No assigned EC number	0.4285	0.9209	0.8297	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016087001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (310 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam12174	70	pfam12174, RST, RCD1-SRO-TAF4 (RST) plant domain	3e-09

>gnl|CDD|204843 pfam12174, RST, RCD1-SRO-TAF4 (RST) plant domain

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 204 TSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLL 259
           +SPW     L +I S+ L    M LL  +Y  L+  KI+ ++FV  L+ + GDKLL
Sbjct: 5   SSPWMPFPMLFSILSKHLPSDIMLLLQHHYEKLRRNKISREEFVRKLRIIVGDKLL 60

This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homologue, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
cd01438	223	tankyrase_like Tankyrases interact with the telome	100.0
cd01439	121	TCCD_inducible_PARP_like Poly(ADP-ribose) polymera	100.0
PF00644	206	PARP: Poly(ADP-ribose) polymerase catalytic domain	100.0
PF12174	70	RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: I	99.96
cd01437	347	parp_like Poly(ADP-ribose) polymerase (parp) catal	99.92
cd01341	137	ADP_ribosyl ADP_ribosylating enzymes catalyze the	99.82
PLN03124	643	poly [ADP-ribose] polymerase; Provisional	99.68
PLN03123	981	poly [ADP-ribose] polymerase; Provisional	99.56
PLN03122	815	Poly [ADP-ribose] polymerase; Provisional	99.45
KOG1037	531	consensus NAD+ ADP-ribosyltransferase Parp, requir	97.48
PF12767	252	SAGA-Tad1: Transcriptional regulator of RNA polII,	92.09
KOG0034	187	consensus Ca2+/calmodulin-dependent protein phosph	89.85
PF12509	165	DUF3715: Protein of unknown function (DUF3715); In	85.47

>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT)

Probab=100.00  E-value=5.3e-39  Score=290.96  Aligned_cols=177  Identities=19%  Similarity=0.299  Sum_probs=143.4

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCC---------CCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceee
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPL---------AADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPA   71 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~---------~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~l   71 (291)
                      ||+|.+++.||..|++.|.+|+++.         .+.+.|++|+||     ||+.+|+.|+.+++.|.+++++..||+.|
T Consensus        18 ~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RI-----QN~~Lw~~y~~kk~~~~~~~~~~~ne~~L   92 (223)
T cd01438          18 LLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKV-----VNKKLRERYCHRQKEIAEENHNHHNERML   92 (223)
T ss_pred             EEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEec-----CCHHHHHHHHHHHHHHHHhhCCCcceEEE
Confidence            6899999999999999999998752         235799999999     89999999999999999998888999999


Q ss_pred             eecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCC---------CCCC-----cEEEEEEEE
Q 022829           72 WFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSES---------DEKG-----LRHILLCRV  137 (291)
Q Consensus        72 whGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~---------d~~G-----~r~m~LcRV  137 (291)
                      ||||+  .++.||.+||+++.+   + +|++||+|+|||.+ + .+|++||..         +.++     .+.||||||
T Consensus        93 fHGt~--~~~~I~~~GFd~r~~---~-~g~~fGkGiYFA~~-a-skS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrV  164 (223)
T cd01438          93 FHGSP--FINAIIHKGFDERHA---Y-IGGMFGAGIYFAEN-S-SKSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRV  164 (223)
T ss_pred             eecCc--chhHHHHhCCCcccc---c-cCceeeeeeeeccc-h-hhhccccccccccccCcccccccccccceeEEEEEE
Confidence            99996  578999999999865   2 58999999999984 3 467898743         2222     478999999


Q ss_pred             eeccceecCCCCCCCCCCCCCcccccCCCCC----CcEEEEeecCCCcceeeceEEEEEec
Q 022829          138 ILGKMEVIPRGSKQFHPTSLEFDSGVDNLCK----PSRYTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       138 L~G~~e~v~pgs~q~~pss~~YDS~VDn~~n----P~~fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                      ++|++....+...-..| ...|||+++....    ..+||||+   ++||||||||+|+..
T Consensus       165 lLGk~~~~~~~~~~~~~-P~G~dSv~g~Ps~~~~~~~EfVVyd---~~Q~YPeYLI~y~~~  221 (223)
T cd01438         165 TLGKSFLQFSAMKMAHA-PPGHHSVIGRPSVNGLAYAEYVIYR---GEQAYPEYLITYQIV  221 (223)
T ss_pred             EecceeeccCCcccCCC-CCCCcceEcCCCCCCcccCEEEEEC---CCcEeeEEEEEEEee
Confidence            99997654433221112 2469999996432    36799999   679999999999864

Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).

>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=100.00  E-value=1.5e-39  Score=269.93  Aligned_cols=114  Identities=27%  Similarity=0.427  Sum_probs=101.8

Q ss_pred             eeeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCCC--CcEEEEEEEEeeccceecCC
Q 022829           70 PAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEK--GLRHILLCRVILGKMEVIPR  147 (291)
Q Consensus        70 ~lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~~--G~r~m~LcRVL~G~~e~v~p  147 (291)
                      +|||||+.+.++.||.+||+++..   |.++++||+|+|||+.  +.+|++||..+.+  |.++|||||||+|+++...|
T Consensus         1 ~LfHGt~~~~~~~I~~~GF~~~~~---g~~~~~~G~GiYFA~~--~s~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~~~~   75 (121)
T cd01439           1 LLFHGTSADAVEAICRHGFDRRFC---GKHGTMYGKGSYFAKN--ASYSHQYSKKSPKADGLKEMFLARVLTGDYTQGHP   75 (121)
T ss_pred             CcccccChhhHHHHHHccCCCccC---CCCCCccCCeeecccC--hhhhhcccccCcCCCCcEEEEEEEEEecceecCCC
Confidence            489999999999999999999987   7789999999999994  4578999976664  99999999999999877655


Q ss_pred             CC-----CCCCCCCCCcccccCCCCCCcEEEEeecCCCcceeeceEEEE
Q 022829          148 GS-----KQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSF  191 (291)
Q Consensus       148 gs-----~q~~pss~~YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItf  191 (291)
                      +.     ++..|+++.|||+|||+.||++||||+   ++||||||||||
T Consensus        76 ~~~~pP~~~~~~~~~~yDS~vd~~~~p~~~Vvf~---~~q~yPeYlI~y  121 (121)
T cd01439          76 GYRRPPLKPSGVELDRYDSCVDNVSNPSIFVIFS---DVQAYPEYLITY  121 (121)
T ss_pred             cccCCCCccCCCCCCCccceeCCCCCCCEEEEEe---CCccceeEEEEC
Confidence            44     667788899999999999999999999   479999999997

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation

>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself

Probab=100.00  E-value=5.6e-35  Score=259.71  Aligned_cols=172  Identities=23%  Similarity=0.381  Sum_probs=137.2

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCC-CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAA-DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDE   79 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~-~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~   79 (291)
                      |+.|++++.||..|++.|.++|++... ...|.+|+||     +|..+|+.|+..++        ..|+++|||||+.+.
T Consensus         5 l~~l~~~s~ey~~I~~~f~~~~~~~~~~~~~I~~I~~i-----~~~~~~~~f~~~~~--------~~n~~~L~HGt~~~~   71 (206)
T PF00644_consen    5 LVPLEPDSEEYKEIEKYFKKTWKPVHKYKPKIKKIFRI-----QNPSLWERFEEKKK--------EGNERLLFHGTSAEN   71 (206)
T ss_dssp             EEEEETTSHHHHHHHHHHHHTSTSTTTEEEEEEEEEEE-----EEHHHHHHHHHHHH--------SSSEEEEEEEETGGG
T ss_pred             EEEcCCCCHHHHHHHHHHHhHCCCCCCCCCEEEEEEEE-----cChhHHHHHHHHHh--------cCCceEEeCCCChhh
Confidence            468999999999999999999986543 6899999999     78899999987766        457999999999999


Q ss_pred             HHHHHhcCC--CCCCCCCCCCCCCccccceeeCCCCCccccccCCCC-CCCCcEEEEEEEEeeccceecCCCCC-CC---
Q 022829           80 INEIVCHGF--SQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSES-DEKGLRHILLCRVILGKMEVIPRGSK-QF---  152 (291)
Q Consensus        80 v~~I~~~GF--~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~-d~~G~r~m~LcRVL~G~~e~v~pgs~-q~---  152 (291)
                      +..|+.+||  +++..   +.+|.+||.|+|||++  +..|+.||.. +.+|.++||||||++|++..+..... ..   
T Consensus        72 ~~~I~~~G~~~~~~~~---~~~g~~fG~GiYfs~~--~s~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~~~~~~~  146 (206)
T PF00644_consen   72 ICSILRNGFKIDPRKA---SRNGGMFGKGIYFSDN--SSKSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNPMTSPPP  146 (206)
T ss_dssp             HHHHHHHSS---TTTS---CGGCSTTSSSEEEBSS--HHHHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCTGSSGCT
T ss_pred             ccchhcCCCccCcccc---ccCCceeeeEEEeCcc--hhhhcccCCCccCCcceeeeEEEEEeccceeeccCcccccccC
Confidence            999999999  66655   6678999999999984  5678999998 89999999999999999543321111 00   


Q ss_pred             ---------------------CCCCCC-cccccCCCCCCcEEEEeecCCCcceeeceEEEEEe
Q 022829          153 ---------------------HPTSLE-FDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRV  193 (291)
Q Consensus       153 ---------------------~pss~~-YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItfK~  193 (291)
                                           -|.... .+..++...+|++||||+   +.|+||+|||+||.
T Consensus       147 g~~sv~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~---~~q~~p~YLi~y~~  206 (206)
T PF00644_consen  147 GYDSVKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYD---NSQVYPEYLITYKF  206 (206)
T ss_dssp             TESEEEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESS---GGGEEEEEEEEEEE
T ss_pred             CcceecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEc---ccceeeEEEEEEEC
Confidence                                 122221 122233348899999998   57999999999983

PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....

>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors

Probab=99.96  E-value=8.7e-30  Score=193.19  Aligned_cols=68  Identities=38%  Similarity=0.681  Sum_probs=66.7

Q ss_pred             CCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 022829          202 KTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNE  269 (291)
Q Consensus       202 ~~~sp~~~F~~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k  269 (291)
                      +|+|||||||+||++|+++|||++|++|+++|++||++||||+||||+||.||||+||+++|+++|+|
T Consensus         3 ~P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~~lq~k   70 (70)
T PF12174_consen    3 RPTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIKSLQQK   70 (70)
T ss_pred             CCCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            49999999999999999999999999999999999999999999999999999999999999999986

>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=99.92  E-value=4.6e-25  Score=212.01  Aligned_cols=173  Identities=16%  Similarity=0.250  Sum_probs=129.3

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCC-CCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPL-AADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDE   79 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~-~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~   79 (291)
                      ++.|+++|.||+.|++.|..|.+.. ....+|..|.||     ++...|+.|+.++        ...|+++|||||+...
T Consensus       140 i~~L~~~s~ey~~I~~y~~~t~~~~~~~~~~V~~If~i-----~r~~e~~~F~~~~--------~~~n~~lLwHGsr~~n  206 (347)
T cd01437         140 IEPLDKDSEEYKIIEKYLKNTHAPTTEYTVEVQEIFRV-----EREGETDRFKPFK--------KLGNRKLLWHGSRLTN  206 (347)
T ss_pred             EEECCCCChHHHHHHHHHHhcCCCCCCcceeEEEEEEe-----cCCCchhhhHHhh--------ccCCeEEEEcCCChhh
Confidence            4679999999999999999998752 235899999999     5567778886411        3578999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCC-CCcEEEEEEEEeeccceecCCCCCCCCCCCCC
Q 022829           80 INEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDE-KGLRHILLCRVILGKMEVIPRGSKQFHPTSLE  158 (291)
Q Consensus        80 v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~-~G~r~m~LcRVL~G~~e~v~pgs~q~~pss~~  158 (291)
                      +..|+.+||+.... .+..+|.+||+|+|||..  +..|++||.++. +|.++||||+|++|++...........-...-
T Consensus       207 ~~~Il~~Gl~~~~~-~~~~~g~mfGkGIYFAd~--~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~g  283 (347)
T cd01437         207 FVGILSQGLRIAPP-EAPVTGYMFGKGIYFADM--FSKSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPKG  283 (347)
T ss_pred             HHHHHhcCCCcCcc-ccccCCccccceEeecCc--hHhhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCCC
Confidence            99999999998642 125678899999999984  457899998876 78999999999999975432211000101234


Q ss_pred             cccccC---------------------------------CCCCCcEEEEeecCCCcceeeceEEEEE
Q 022829          159 FDSGVD---------------------------------NLCKPSRYTVWSCYMNSHIFVDYIVSFR  192 (291)
Q Consensus       159 YDS~VD---------------------------------n~~nP~~fVVw~~~~ntqiyPEYlItfK  192 (291)
                      |||+.-                                 ..-.-..||||+   .+||.+.|||.+|
T Consensus       284 ~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd---~~Qir~rYLv~vk  347 (347)
T cd01437         284 KHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVPSGHKTDTSLLYNEYIVYD---VAQVRLKYLLEVK  347 (347)
T ss_pred             ceeeEeccCCCCCchhheeccCCeEeeCCccccCCcCCCcccccCCeEeec---hhHEEEEEEEEeC
Confidence            444211                                 011125699999   5799999999986

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.

>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates

Probab=99.82  E-value=2.5e-20  Score=157.51  Aligned_cols=113  Identities=17%  Similarity=0.119  Sum_probs=91.3

Q ss_pred             eeeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCCC---------------CcEEEEE
Q 022829           70 PAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEK---------------GLRHILL  134 (291)
Q Consensus        70 ~lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~~---------------G~r~m~L  134 (291)
                      +|||||+.+.+..|+.+||+++... +..++.+||+|+|||..  +..|+.||..+.+               +.+.|||
T Consensus         1 ~l~HGs~~~n~~~I~~~Gl~~~~~~-~~~~g~~~G~GiYfa~~--~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl   77 (137)
T cd01341           1 FLFHGSPPGNVISILKLGLRPASYG-VLLNGGMFGKGIYSAPN--ISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFL   77 (137)
T ss_pred             CccccCCccchHHHhhCCCCCCCcc-ccccccccCceeeecCC--hHHhhhhhcccCCcccccccccccccccccceeEE
Confidence            5899999999999999999998651 13358999999999984  4468899998876               4567999


Q ss_pred             EEEeecccee-----cCCCCCCCCCCCCCccccc----CCCCCCcEEEEeecCCCcceeece
Q 022829          135 CRVILGKMEV-----IPRGSKQFHPTSLEFDSGV----DNLCKPSRYTVWSCYMNSHIFVDY  187 (291)
Q Consensus       135 cRVL~G~~e~-----v~pgs~q~~pss~~YDS~V----Dn~~nP~~fVVw~~~~ntqiyPEY  187 (291)
                      ++|++|....     .+|..+...|..+.||++|    |+..+|.+||||+..  +|+||||
T Consensus        78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~e~VV~~~~--~Qv~~~Y  137 (137)
T cd01341          78 TLGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRDALLLPREYIIFEPY--SQVSIRY  137 (137)
T ss_pred             EEEEeccccccccccccccccCCCCCCeEEEcccccccchhhCCCeEEEecch--hhceecC
Confidence            9999987544     3344444455668899999    699999999999941  6999998

Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o

>PLN03124 poly [ADP-ribose] polymerase; Provisional

Probab=99.68  E-value=5.6e-16  Score=158.76  Aligned_cols=126  Identities=20%  Similarity=0.277  Sum_probs=96.5

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCC--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAA--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD   78 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~   78 (291)
                      |..|+++|.||..|++.+..|-+..+.  ..+|+.|.||...  ....||+.|.           ...|.++|||||...
T Consensus       430 i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~--~E~~rF~~~~-----------~~~Nr~LLWHGSr~~  496 (643)
T PLN03124        430 LEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSRE--GEDERFQKFS-----------STKNRMLLWHGSRLT  496 (643)
T ss_pred             eEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccc--cchhhHHHhh-----------ccCCeEEEEcCCCcc
Confidence            357899999999999999888655332  4788999999333  2233444331           235889999999999


Q ss_pred             hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCC-CCcEEEEEEEEeeccc
Q 022829           79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDE-KGLRHILLCRVILGKM  142 (291)
Q Consensus        79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~-~G~r~m~LcRVL~G~~  142 (291)
                      .+..|+.+|+.-... .+..+|.+||+|+|||..  +..|++||.+.. ++...||||.|.+|++
T Consensus       497 N~~gILs~GLriaPp-ea~~~GymfGkGIYFAd~--~skSa~Yc~~~~~~~~g~llLceVaLG~~  558 (643)
T PLN03124        497 NWTGILSQGLRIAPP-EAPSTGYMFGKGVYFADM--FSKSANYCYASAANPDGVLLLCEVALGDM  558 (643)
T ss_pred             cHHHHHhccCccCCc-ccccccccccceeEecch--hhhhhhhhhccCCCCeeEEEEEEEecCCc
Confidence            999999999974311 125678999999999973  568899997653 5678999999999985

>PLN03123 poly [ADP-ribose] polymerase; Provisional

Probab=99.56  E-value=2e-14  Score=153.35  Aligned_cols=127  Identities=17%  Similarity=0.228  Sum_probs=96.7

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCC--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAA--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD   78 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~   78 (291)
                      |..|+++|.||..|++.+..|=++.+.  ..+|+.|.||...  ....||+.|.   .       ...|.+.|||||...
T Consensus       769 i~~L~~~s~ey~~I~~Yl~nT~~~th~~y~l~v~~IF~v~r~--gE~~rf~~~~---~-------~~~Nr~LLwHGSr~~  836 (981)
T PLN03123        769 ISPLPHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLERE--GEFDKYAPYK---E-------KLKNRMLLWHGSRLT  836 (981)
T ss_pred             EEECCCCCHHHHHHHHHHHhcCCCccccccceeeEEEEeccc--ccccchhhHh---h-------cCCCceEEEcCCCcc
Confidence            357899999999999999988654332  3569999999332  2224444332   1       235889999999999


Q ss_pred             hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccc
Q 022829           79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKM  142 (291)
Q Consensus        79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~  142 (291)
                      ....|+.+||.-... .|..+|.|||+|||||.  .+..|++||-+. .++...||||.|.+|++
T Consensus       837 N~~gILs~GLriaPp-eap~tGymfGkGIYFAD--~~SKSanYc~~~~~~~~g~llLceVaLG~~  898 (981)
T PLN03123        837 NFVGILSQGLRIAPP-EAPATGYMFGKGVYFAD--LVSKSAQYCYTDRKNPVGLMLLSEVALGEI  898 (981)
T ss_pred             cHHHHhhccCccCCc-cccccCccccceeEecc--hhhhhhhhhcccCCCCceEEEEEEEecCCh
Confidence            999999999975311 12668999999999996  356789999765 46788999999999996

>PLN03122 Poly [ADP-ribose] polymerase; Provisional

Probab=99.45  E-value=3.8e-13  Score=141.32  Aligned_cols=174  Identities=14%  Similarity=0.204  Sum_probs=120.3

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCC---C--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecC
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLA---A--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGA   75 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~---~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGt   75 (291)
                      |..|+++|.||..|++.+..|-++.+   .  ..+|+.|.||....   ..||+.|.           ...|-+.||||+
T Consensus       593 i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~g---e~rf~~~~-----------~l~NR~LLWHGS  658 (815)
T PLN03122        593 ISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSA---GPSLDEIK-----------KLPNKVLLWCGT  658 (815)
T ss_pred             EEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCc---cccchhhc-----------CCCCceEEeccc
Confidence            45789999999999999999876533   1  35688888883331   23443221           235778999999


Q ss_pred             ChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccc--eecCCC----
Q 022829           76 SRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKM--EVIPRG----  148 (291)
Q Consensus        76 s~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~--e~v~pg----  148 (291)
                      .......|+++|+--... .|+.+|.|||+|||||.  .+..|++||-.. .+++-.||||-|.+|++  |...+.    
T Consensus       659 R~tN~~gILsqGLRIAPP-EAPvtGYMFGKGIYFAD--~~SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~~  735 (815)
T PLN03122        659 RSSNLLRHLAKGFLPAVC-SLPVPGYMFGKAIVCSD--AAAEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDVK  735 (815)
T ss_pred             hhhhHHHHhhCCCccCCc-ccCCCCCccCCeeEecc--hhhhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhhh
Confidence            999999999999975321 14788999999999996  456889999654 45667899999999995  433221    


Q ss_pred             -------------CCCCCCCCC-Ccc------------ccc-CCCCCCcEEEEeecCCCcceeeceEEEEEec
Q 022829          149 -------------SKQFHPTSL-EFD------------SGV-DNLCKPSRYTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       149 -------------s~q~~pss~-~YD------------S~V-Dn~~nP~~fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                                   .....|+.. ..+            |.+ |.--.-..||||+.   +||--.||+..|..
T Consensus       736 ~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~~~~~~~L~yNEYIVYDv---aQvrirYL~~vkf~  805 (815)
T PLN03122        736 SYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSPLEYNEYAVYDP---KQVSIRFLVGVKYE  805 (815)
T ss_pred             ccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCccCCCCCcccccCceEEEch---hHEEEEEEEEEEee
Confidence                         111122211 111            111 11223557999995   69999999998864

>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=6.2e-05  Score=76.88  Aligned_cols=125  Identities=18%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             ccCCCChhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcC-CCCcceeeeecCChhhHH
Q 022829            3 KIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCG-GNANIRPAWFGASRDEIN   81 (291)
Q Consensus         3 ~L~~~s~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~g-g~~Ner~lwhGts~~~v~   81 (291)
                      .++.++.||..|.+.-..+-..-.+ ...+.|..+          |++=+ +-+.+..... ...|-+.+|||+....+.
T Consensus       313 ~~~~~~~e~kmi~~~~~~~~~~~~~-~~~~~~~~l----------~k~~~-~~e~~~~~~~~~~~~r~llw~gs~~~n~a  380 (531)
T KOG1037|consen  313 KLDKDSEEFKMIAQYVEKTHAKTST-VKVVQIADL----------KKVNE-KNEADRKVDISELINRQLLWHGSRFGNLA  380 (531)
T ss_pred             cccccchhHHHHHHHHHhhccccCc-cCceeehhH----------HHhhh-cccccccccCcccccccchhcccceeeee
Confidence            4667788999999988876433222 233334444          11111 1122222221 356778899999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccc
Q 022829           82 EIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKM  142 (291)
Q Consensus        82 ~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~  142 (291)
                      .|..+|+--...+ +...+.+||+|+|||..  +..|++||-.- .....+|++|-|.+|+.
T Consensus       381 ~~l~~g~~~~~~~-~~~~g~~~gkgiyfa~~--~sks~~y~~~~~~k~~~~ll~~~~alg~~  439 (531)
T KOG1037|consen  381 GILSPGLRLAPSE-APVTGYMFGKGIYFADA--ASKSANYCVTMKGKPTGHLLLCDVALGKE  439 (531)
T ss_pred             ccccCCceecCCC-CCceeeccccceEeeee--cccccccccccccCchhhhhhhhhhccch
Confidence            9999998754321 14568999999999974  55788998665 66788999999999984

>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]

Probab=92.09  E-value=0.67  Score=42.92  Aligned_cols=71  Identities=11%  Similarity=0.258  Sum_probs=62.1

Q ss_pred             CCCcccHHHHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh-h------HHHHHHHHHHhhcccccc
Q 022829          204 TSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG-D------KLLFTVTKFYMNELRSAR  274 (291)
Q Consensus       204 ~sp~~~F~~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG-D------~lL~~~ik~~q~k~~~~~  274 (291)
                      ..+-+-...|-..|.+.|.+++...=..+...|=.+||||+||-+.++.+.| |      ++|.+++.+.+.+.||..
T Consensus         5 ~~~Ridl~~lk~~l~~~LG~~~~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na~~~~p~~~   82 (252)
T PF12767_consen    5 QNSRIDLEELKSQLQKRLGPDRWKKYFQSLKRFLSGKLSKEEFDKECRRILGRENVHLHNQLILSILKNALAKSPPPS   82 (252)
T ss_pred             cccccCHHHHHHHHHHHHChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            3445667889999999999999999999999999999999999999999998 4      479999999987877664

It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex

>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]

Probab=89.85  E-value=0.71  Score=41.44  Aligned_cols=59  Identities=17%  Similarity=0.234  Sum_probs=44.9

Q ss_pred             ccHHH---HHHHHhccCChh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh------hHHHHHHHHHH
Q 022829          208 KGIQT---LMAIFSRFLHPS-KMALLAKYYNDLQNQKITSQQFVMNLKQVTG------DKLLFTVTKFY  266 (291)
Q Consensus       208 ~~F~~---L~~~l~~~l~~~-~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG------D~lL~~~ik~~  266 (291)
                      +.|..   ++++.++.-++. ++....+.|+-=+.|.|+|+||.+.|+..+|      |.++..++-+.
T Consensus        84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t  152 (187)
T KOG0034|consen   84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKT  152 (187)
T ss_pred             cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence            66555   455555555555 8999999999999999999999999999999      44555544443

>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length

Probab=85.47  E-value=2.7  Score=36.93  Aligned_cols=115  Identities=15%  Similarity=0.160  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHcC--CCCcceeeeecCCh-hhHHHHHhcCCCCCCCCCCCCCCCcccc---ceeeCCCCCcc
Q 022829           43 IARARLDSFKIFANAVAKKCG--GNANIRPAWFGASR-DEINEIVCHGFSQCGGDGARKLGPMHGF---GVQLLPINSSI  116 (291)
Q Consensus        43 ~n~~r~~~F~~~~~~~~~k~g--g~~Ner~lwhGts~-~~v~~I~~~GF~~~~~~~~g~~~~~yG~---GvYfA~~~~~~  116 (291)
                      .|.++=..|-...+.|.....  ..--|.+.|+-... ..+..||..|...+..     .++..|+   |+|+...  +-
T Consensus         2 ~n~~Ls~efse~~~~~~~~~~~~~eL~e~~~fl~~~~~~~~~~v~~~GL~v~~~-----k~~~Lg~ps~gv~~~~~--~D   74 (165)
T PF12509_consen    2 HNEALSKEFSEKRSSMKREGRSSSELPENYCFLSKESRSQVTSVCQRGLKVGNQ-----KGTILGKPSMGVYLSRH--SD   74 (165)
T ss_pred             CCHHHHHHHhhhhhhhhhcCCChhhhhhhheeeecccchhhHHHHhcccccccc-----cccccCCCCCCcccccC--Cc
Confidence            355677778777777655432  13336677877755 7889999999986432     3455666   8999863  21


Q ss_pred             ccccCCCCCCCCcEEEEEEEEeeccceecCCCC---CCCCCCCCCcccccC
Q 022829          117 NGVLSSESDEKGLRHILLCRVILGKMEVIPRGS---KQFHPTSLEFDSGVD  164 (291)
Q Consensus       117 ~s~~ys~~d~~G~r~m~LcRVL~G~~e~v~pgs---~q~~pss~~YDS~VD  164 (291)
                      .............-.+++.+|+-|++..+.+.+   +.+-++...||.-|-
T Consensus        75 ~~~~~~~~~~~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~~p~p~~d~h~~  125 (165)
T PF12509_consen   75 LLESQPFICSSANGEIIIFKVLKGKVKKISDSNGSTQSFLDPTPSYDCHVS  125 (165)
T ss_pred             hhhcchhhhcCCCCceeEEeeccCcccccccccccccccCCCcccHHHHhh
Confidence            122211111112236999999999998776655   555666778998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
3blj_A	221	Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC,	3e-26
3smj_A	193	Poly [ADP-ribose] polymerase 14; diphtheria toxin	2e-25
3hkv_A	217	PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra	4e-25
2pqf_A	198	Poly [ADP-ribose] polymerase 12; enzyme-inhibitor	2e-17
2x5y_A	173	Zinc finger CCCH-type antiviral protein 1; antivir	1e-11
3u9h_A	240	Tankyrase-2; protein-ligand complex, diphtheria to	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3c4h_A	357	Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co	3e-04
4dqy_C	506	Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib	7e-04

>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221

 Score =  102 bits (254), Expect = 3e-26
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 20/196 (10%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           MV++E G   +  +K  F            I  + +   + L        +++    +  
Sbjct: 39  MVQLEPGQSEYNTIKDKFTRTCSS----YAIEKIERIQNAFLWQS-----YQVKKRQMDI 89

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           K     N R  + G   D +  +  HGF++     A K    +G G       S      
Sbjct: 90  KNDHKNNERLLFHGTDADSVPYVNQHGFNRSC---AGKNAVSYGKGTYFAVDASYSAKDT 146

Query: 121 SSESDEKGLRHILLCRVILG-----KMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVW 175
            S+ D  G +H+ + RV+ G     +  ++    K  H  +  FDS  +N   P  + V 
Sbjct: 147 YSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKNPHNPTDLFDSVTNNTRSPKLFVV- 205

Query: 176 SCYMNSHIFVDYIVSF 191
             + ++  + +Y+++F
Sbjct: 206 --FFDNQAYPEYLITF 219

>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193

 Score = 99.3 bits (247), Expect = 2e-25
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 20/197 (10%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           +V++   D  +  V   F           RI  + +     L      +S++     +  
Sbjct: 11  VVELLPSDPEYNTVASKFNQTCSH----FRIEKIERIQNPDL-----WNSYQAKKKTMDA 61

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           K G   N +  + G     +  +  +GF++     A K    +G G       +      
Sbjct: 62  KNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSY---AGKNAVAYGKGTYFAVNANYSANDT 118

Query: 121 SSESDEKGLRHILLCRVILG-----KMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVW 175
            S  D  G +H+   RV+ G        +I   SK     +  +D+  DN+  PS +   
Sbjct: 119 YSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVA- 177

Query: 176 SCYMNSHIFVDYIVSFR 192
             + +   + +Y+++FR
Sbjct: 178 --FYDYQAYPEYLITFR 192

>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217

 Score = 99.0 bits (246), Expect = 4e-25
 Identities = 30/197 (15%), Positives = 77/197 (39%), Gaps = 16/197 (8%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           + ++ E       V + F   +    +  R++ + + S   L  +     ++++   + +
Sbjct: 13  LERLAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQ-----YELYRERLLQ 67

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
           +C      +  + G +   + +I  HGF++       +   ++G GV      S      
Sbjct: 68  RCERRPVEQVLYHGTTAPAVPDICAHGFNRSF---CGRNATVYGKGVYFAKRASLSVQDR 124

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRG-----SKQFHPTSLEFDSGVDNLCKPSRYTVW 175
            S  +  G + + + RV+ G      RG      +      L +DS +D +C+PS + + 
Sbjct: 125 YSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSAMDCICQPSIFVI- 183

Query: 176 SCYMNSHIFVDYIVSFR 192
             + ++     ++++  
Sbjct: 184 --FHDTQALPTHLITCE 198

>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198

 Score = 77.8 bits (191), Expect = 2e-17
 Identities = 27/199 (13%), Positives = 68/199 (34%), Gaps = 23/199 (11%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
            + +      +  V   F   +        +  + +    +L        ++     + K
Sbjct: 14  KITLSSSSEEYQKVWNLFNRTL----PFYFVQKIERVQNLALWEV-----YQWQKGQMQK 64

Query: 61  KCGG-NANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGV 119
           + GG   + R  + G S   ++ I    F           G  +G G       +  +  
Sbjct: 65  QNGGKAVDERQLFHGTSAIFVDAICQQNFDW---RVCGVHGTSYGKGSYFARDAAYSHH- 120

Query: 120 LSSESDEKGLRHILLCRVILGKMEVIPRGSK----QFHPTSLEFDSGVDNLCKPSRYTVW 175
             S+SD +    + L RV++G+             +   ++  +DS V+++  PS + + 
Sbjct: 121 -YSKSDTQT-HTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVI- 177

Query: 176 SCYMNSHIFVDYIVSFRVV 194
             +    ++ +Y++ +   
Sbjct: 178 --FEKHQVYPEYVIQYTTS 194

>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Length = 173

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 24/165 (14%), Positives = 58/165 (35%), Gaps = 14/165 (8%)

Query: 30  RILALHKNSCSSL-IARA-RLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHG 87
           R+    K S  +  I +  ++++ ++      KK       +  ++  SR  +  I  + 
Sbjct: 19  RVSEHFKASMKNFKIEKIKKIENSELLDKFTWKKSQMKEEGKLLFYATSRAYVESICSNN 78

Query: 88  FSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPR 147
           F              +G G+         +        +     + + +V++GK      
Sbjct: 79  F---DSFLHETHENKYGKGIYFAKDAIYSHKNC---PYDAKNVVMFVAQVLVGKFI---E 129

Query: 148 GSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFR 192
           G+  +     +FDS VD    PS + +   +    ++  Y++ + 
Sbjct: 130 GNITYTSPPPQFDSCVDTRSNPSVFVI---FQKDQVYPQYVIEYT 171

>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240

 Score = 60.9 bits (147), Expect = 4e-11
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 22/210 (10%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIAR----ARLDSFKIFAN 56
           ++ +   D     V++   S +           +        I +       + +     
Sbjct: 33  LIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRK 92

Query: 57  AVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQL------- 109
            V+++   +AN R  + G+    +N I+  GF +         G    F           
Sbjct: 93  EVSEENHNHANERMLFHGS--PFVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYV 150

Query: 110 -LPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHP----TSLEFDSGVD 164
                 +   V    S     R +L CRV LGK  +     K  H      S+     V+
Sbjct: 151 YGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVN 210

Query: 165 NLCKPSRYTVWSCYMNSHIFVDYIVSFRVV 194
            L   + Y +   Y     + +Y+++++++
Sbjct: 211 GLA-LAEYVI---YRGEQAYPEYLITYQIM 236

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 36/256 (14%), Positives = 74/256 (28%), Gaps = 86/256 (33%)

Query: 29  TRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPA------WFGASRDEINE 82
           T I+    N       R   D   +F          +A+I P       WF   + ++  
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPP--------SAHI-PTILLSLIWFDVIKSDVMV 406

Query: 83  IV--CHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILG 140
           +V   H +S            +    + L          L  + + +   H    R I+ 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIP--SIYLE---------LKVKLENEYALH----RSIVD 451

Query: 141 KMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSH---------------IFV 185
               IP+            D           Y  +  ++  H               +F+
Sbjct: 452 HYN-IPKTFDSDDLIPPYLDQ----------Y--FYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 186 DYIVSFRVVCFSASAIK-TTSPWKGIQTLMAIFSRFLHPSKMALLAKYY------NDLQN 238
           D    FR   F    I+  ++ W    +++    +           K+Y      ND + 
Sbjct: 499 D----FR---FLEQKIRHDSTAWNASGSILNTLQQL----------KFYKPYICDNDPKY 541

Query: 239 QKITS--QQFVMNLKQ 252
           +++ +    F+  +++
Sbjct: 542 ERLVNAILDFLPKIEE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 38/250 (15%), Positives = 66/250 (26%), Gaps = 81/250 (32%)

Query: 77  RDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPI----NSSI-----NGV----LSSE 123
           R   N ++  G              + G G   + +    +  +       +    L + 
Sbjct: 148 RPAKN-VLIDG--------------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 124 SDEKGLRHIL--LCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNS 181
           +  + +  +L  L   I          S       L   S    L    R      Y N 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSS---NIKLRIHSIQAEL---RRLLKSKPYENC 246

Query: 182 HIFVD------YIVSFRVVCFSASAIKT--TSPWKGI-----------QTLMAIFSRFLH 222
            + +          +F + C      K   T+ +K +            +L         
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 223 PSKMALLAKYYN----DLQNQKITSQQFVM---------------NLKQVTGDKLLFTVT 263
               +LL KY +    DL  + +T+    +               N K V  DKL   + 
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 264 KFYMNELRSA 273
               N L  A
Sbjct: 361 SSL-NVLEPA 369

>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 36  KNSCSSLIARARLDSFKIF---ANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQCG 92
           + + S+         +K+         +      N +  W G +   +  I+  G     
Sbjct: 169 EQTGSNHRCPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMP 228

Query: 93  GDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQF 152
             G R +G    F  +    + S   V+  +     + ++ L  V LG+   I   +   
Sbjct: 229 HSGGR-VGKGIYFASEN---SKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSL 284

Query: 153 HPTSLEFDS 161
                 FDS
Sbjct: 285 KSPPPGFDS 293

>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 30/220 (13%), Positives = 54/220 (24%), Gaps = 40/220 (18%)

Query: 1   MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
           +  ++       +++K   +          +  +            R   FK   N    
Sbjct: 285 IKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHN---- 340

Query: 61  KCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL 120
                   R  W G+       I+  G  +     A   G M G G+       S +   
Sbjct: 341 -------RRLLWHGSRTTNFAGILSQGL-RIAPPEAPVTGYMFGKGIYFAD-MVSKSANY 391

Query: 121 SSESDEKGLRHILLCRVILGKMEVIPRGSKQFHP------------------TSLEFDSG 162
              S    +  ILL  V LG M  +   S                        ++  D  
Sbjct: 392 CHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGV 451

Query: 163 VDNLCKPSRYTVWS---------CYMNSHIFVDYIVSFRV 193
              L       V            Y  + + + Y++  + 
Sbjct: 452 DVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKF 491

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3hkv_A	217	PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra	100.0
3smj_A	193	Poly [ADP-ribose] polymerase 14; diphtheria toxin	100.0
3blj_A	221	Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC,	100.0
2pqf_A	198	Poly [ADP-ribose] polymerase 12; enzyme-inhibitor	100.0
2x5y_A	173	Zinc finger CCCH-type antiviral protein 1; antivir	100.0
3u9h_A	240	Tankyrase-2; protein-ligand complex, diphtheria to	100.0
1efy_A	350	Poly (ADP-ribose) polymerase; benzimidazole, inhib	100.0
3c4h_A	357	Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co	99.97
3kjd_A	368	Poly [ADP-ribose] polymerase 2; transferase, enzym	99.96
4dqy_C	506	Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib	99.96
4f0d_A	277	PARP-16, poly [ADP-ribose] polymerase 16; transfer	98.99
2ld7_B	75	Paired amphipathic helix protein SIN3A; transcript	80.58

>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-52  Score=377.75  Aligned_cols=182  Identities=15%  Similarity=0.320  Sum_probs=165.2

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhhH
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEI   80 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~v   80 (291)
                      |++|++++.||+.|++.|.+||+...+..+|++|+||     +|+.+|+.|+.++++|++++++..||++|||||+.+.+
T Consensus        13 L~~L~~~s~Ey~~V~~~F~~t~~~~~~~~~I~~I~RI-----qn~~l~~~f~~~k~~m~~k~~~~~ne~~LfHGt~~~~~   87 (217)
T 3hkv_A           13 LERLAENTGEFQEVVRAFYDTLDAARSSIRVVRVERV-----SHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAV   87 (217)
T ss_dssp             EEECCSSSHHHHHHHHHHHHTTGGGGGTEEEEEEEEE-----CCHHHHHHHHHHHHHHHHHCCSSCSEEEEEEEECGGGH
T ss_pred             ceECCCCChHHHHHHHHHHhhcCCcCCCceEEEEEEE-----CChhHHHHHHHHHHHHHHhcCCCCceEEEEeCCCHHHH
Confidence            5789999999999999999999764456899999999     78899999999999999998888999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccc--cCCCCCCCCcEEEEEEEEeeccce-----ecCCCCCCCC
Q 022829           81 NEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGV--LSSESDEKGLRHILLCRVILGKME-----VIPRGSKQFH  153 (291)
Q Consensus        81 ~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~--~ys~~d~~G~r~m~LcRVL~G~~e-----~v~pgs~q~~  153 (291)
                      ..||.+||+++.+   |.++++||+|+|||.+ ++ +|+  .||.+|++|.++|||||||+|+++     ++.|++++..
T Consensus        88 ~~I~~~GF~~~~~---g~~g~~~G~GiYFA~~-~s-~S~~~~Y~~~~~~g~~~m~lcrVl~G~~~~g~~~~~~PP~~~~~  162 (217)
T 3hkv_A           88 PDICAHGFNRSFC---GRNATVYGKGVYFAKR-AS-LSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPLRGPG  162 (217)
T ss_dssp             HHHHHHCSCTTTS---CCCCCTTCSSEEEESS-HH-HHTSTTTSCCCTTSEEEEEEEEEECCSEEECCTTCSSSCBCCTT
T ss_pred             HHHHhcCCccccc---CcchhccccceeccCC-cc-cccccccccccCCCceEEEEEEEEccccccCCCccCCCCCCccC
Confidence            9999999999987   7789999999999995 34 454  699999999999999999999987     4566777667


Q ss_pred             CCCCCcccccCCCCCCcEEEEeecCCCcceeeceEEEEEecC
Q 022829          154 PTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVVC  195 (291)
Q Consensus       154 pss~~YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItfK~~~  195 (291)
                      |+++.|||+||++.||++||||+   |+||||||||+||.++
T Consensus       163 ~~~~~yDSvvd~~~np~~~VVf~---~~qiyPeYLI~y~~~~  201 (217)
T 3hkv_A          163 HVLLRYDSAMDCICQPSIFVIFH---DTQALPTHLITCEHVP  201 (217)
T ss_dssp             CSSSBCSEEESCSSSCCEEEECC---TTSEEEEEEEEEEECC
T ss_pred             CCCCceeEEECCCCCCCEEEEEc---CCcCceeEEEEEecCC
Confidence            77899999999999999999999   6799999999999884

>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*

Probab=100.00  E-value=2e-51  Score=363.67  Aligned_cols=176  Identities=19%  Similarity=0.277  Sum_probs=161.5

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhhH
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEI   80 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~v   80 (291)
                      |++|++++.||+.|++.|.+||+    ..+|++|+||     +|+.+|+.|+.++++|++++++..||++|||||+.+.+
T Consensus        11 l~~L~~~s~Ey~~V~~~f~~t~~----~~~I~~I~rI-----~n~~l~~~f~~~k~~~~~k~~~~~ne~~L~HGt~~~~~   81 (193)
T 3smj_A           11 VVELLPSDPEYNTVASKFNQTCS----HFRIEKIERI-----QNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSV   81 (193)
T ss_dssp             EEECCTTSTTHHHHHHHHHHHHT----TSEEEEEEEE-----ECHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEECGGGH
T ss_pred             EEECCCCChHHHHHHHHHHhhCC----CCeEEEEEEE-----CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCHHHH
Confidence            57899999999999999999984    3799999999     88999999999999999999888999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCcccccc--CCCCCCCCcEEEEEEEEeeccc-----eecCCCCCCCC
Q 022829           81 NEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL--SSESDEKGLRHILLCRVILGKM-----EVIPRGSKQFH  153 (291)
Q Consensus        81 ~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~--ys~~d~~G~r~m~LcRVL~G~~-----e~v~pgs~q~~  153 (291)
                      ..||.+||+++.+   |.++++||+|+|||++  +..|+.  ||.+|++|.++|||||||+|++     +++.||+++..
T Consensus        82 ~~I~~~Gf~~~~~---~~~~~~~G~GiYfa~~--~s~S~~~~y~~~~~~g~~~mllcrV~~G~~~~g~~~~~~pP~~~~~  156 (193)
T 3smj_A           82 PHVNRNGFNRSYA---GKNAVAYGKGTYFAVN--ANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQ  156 (193)
T ss_dssp             HHHHHHTTCCCCT---TGGGSSSCCCEEEESS--HHHHTSTTTSCCCTTSCEEEEEEEEECCSEEECCSSCCSCCBSCTT
T ss_pred             HHHHHcCCCCccC---CCCccccCCeEEecCC--cchhcCccccCCCCCCcEEEEEEEEEecccccCCCccCCCCCccCC
Confidence            9999999999887   7789999999999985  446777  8999999999999999999975     56677888778


Q ss_pred             CCCCCcccccCCCCCCcEEEEeecCCCcceeeceEEEEEe
Q 022829          154 PTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRV  193 (291)
Q Consensus       154 pss~~YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItfK~  193 (291)
                      |+++.|||+||++.||++||||+   |+||||||||+||.
T Consensus       157 ~~~~~yDSvv~~~~~p~~~VVf~---~~qiyP~YlI~y~~  193 (193)
T 3smj_A          157 NPTDLYDTVTDNVHHPSLFVAFY---DYQAYPEYLITFRK  193 (193)
T ss_dssp             STTCBCSEEESCSSSCSEEEECS---TTCEEEEEEEEEEC
T ss_pred             CCCCCccceeCCCCCCCEEEEEe---CCceeeEEEEEEeC
Confidence            88999999999999999999999   57999999999984

>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*

Probab=100.00  E-value=1.4e-47  Score=345.20  Aligned_cols=176  Identities=20%  Similarity=0.296  Sum_probs=156.1

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhhH
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEI   80 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~v   80 (291)
                      |++|++++.||+.|++.|.+|++.    .+|++|+||     +|+.+|+.|+.++++|++++++..||++|||||+.+.+
T Consensus        39 l~~L~~~s~ey~~V~~~f~~t~~~----~~I~~I~rV-----~n~~l~~~f~~~k~~~~~k~~~~~ne~lLfHGt~~~~~  109 (221)
T 3blj_A           39 MVQLEPGQSEYNTIKDKFTRTCSS----YAIEKIERI-----QNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDADSV  109 (221)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHTT----SEEEEEEEE-----EEHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEECGGGH
T ss_pred             EEECCCCCHHHHHHHHHHHhhCCC----CEEEEEEEE-----cChhHHHHHHHHHHHHHHhcCCCCceEEEeccCChHHH
Confidence            578999999999999999999853    699999999     88899999999999999999888999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCcccccc--CCCCCCCCcEEEEEEEEeeccc-----eecCCCCCCCC
Q 022829           81 NEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVL--SSESDEKGLRHILLCRVILGKM-----EVIPRGSKQFH  153 (291)
Q Consensus        81 ~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~--ys~~d~~G~r~m~LcRVL~G~~-----e~v~pgs~q~~  153 (291)
                      ..||.+||+++.+   |.++++||+|+|||+.  +..|+.  ||.+|++|.++|||||||+|++     +++.|++++..
T Consensus       110 ~~I~~~Gf~~~~a---~~~g~~~G~GiYfa~~--~s~S~~~~Y~~~~~~g~~~mllcrV~~G~~~~g~~~~~~pp~~~~~  184 (221)
T 3blj_A          110 PYVNQHGFNRSCA---GKNAVSYGKGTYFAVD--ASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKNPH  184 (221)
T ss_dssp             HHHHHHCCCTTTC--------CCCSSEEEESS--HHHHHSTTTSCCCTTSCEEEEEEEEECCSEEECCTTCSSCCBSSTT
T ss_pred             HHHHHhCCCCccc---CCCCCccCCeEECCcc--hhhhcCcccccCCCCCcEEEEEEEEEeCCccCCChhccCCCcccCC
Confidence            9999999999887   7789999999999995  445665  9999999999999999999965     55677777777


Q ss_pred             CCCCCcccccCCCCCCcEEEEeecCCCcceeeceEEEEEe
Q 022829          154 PTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRV  193 (291)
Q Consensus       154 pss~~YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItfK~  193 (291)
                      |+++.|||+||++.+|++||||++   .||||||||+||+
T Consensus       185 ~~~~~yDSvv~~~~~~~e~VVy~~---~qiyP~YlI~y~~  221 (221)
T 3blj_A          185 NPTDLFDSVTNNTRSPKLFVVFFD---NQAYPEYLITFTA  221 (221)
T ss_dssp             STTSBCSEEESCSSSCSEEEECST---TSEEEEEEEEEEC
T ss_pred             CCCCCCCccccCCCCCCEEEEEcC---CeEeeeEEEEEEC
Confidence            888999999999999999999994   5999999999984

>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=333.44  Aligned_cols=175  Identities=16%  Similarity=0.234  Sum_probs=153.7

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCC-CcceeeeecCChhh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGN-ANIRPAWFGASRDE   79 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~-~Ner~lwhGts~~~   79 (291)
                      |++|++++.||+.|++.|.+||+    ..+|++|+||     +|+.+|+.|+.++++|++++++. .||++|||||+.+.
T Consensus        14 l~~L~~~s~Ey~~v~~~f~~t~~----~~~I~~I~rv-----~n~~l~~~f~~~k~~~~~~~~~~~~ne~~LfHGt~~~~   84 (198)
T 2pqf_A           14 KITLSSSSEEYQKVWNLFNRTLP----FYFVQKIERV-----QNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIF   84 (198)
T ss_dssp             EEECCTTSHHHHHHHHHHHTTCT----TSEEEEEEEE-----ECHHHHHHHHHHHHHHHHTTTTCCCCEEEEEEECCGGG
T ss_pred             EEEcCCCCHHHHHHHHHHHhhCC----CCEEEEEEEe-----CCHHHHHHHHHHHHHHHHhcCCCCcceEEEEecCCHHH
Confidence            57899999999999999999985    3699999999     88999999999999999988764 69999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCCCCcEEEEEEEEeecccee-----cCCCCCCCCC
Q 022829           80 INEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEV-----IPRGSKQFHP  154 (291)
Q Consensus        80 v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~~G~r~m~LcRVL~G~~e~-----v~pgs~q~~p  154 (291)
                      +..||.+||+++.+   |.++++||+|+|||..  +..|+.||.+|+ |.++||||||++|++..     ..|+.+. .+
T Consensus        85 ~~~I~~~Gf~~~~~---~~~g~~~G~GiYfa~~--~s~S~~Y~~~~~-~~~~m~lcrV~~G~~~~~~~~~~~pp~~~-~~  157 (198)
T 2pqf_A           85 VDAICQQNFDWRVC---GVHGTSYGKGSYFARD--AAYSHHYSKSDT-QTHTMFLARVLVGEFVRGNASFVRPPAKE-GW  157 (198)
T ss_dssp             HHHHHHHCCCTTTT---CCCSSCSCSSEEEESS--HHHHHTTCCCSS-SEEEEEEEEEECCSEEECCTTCSSCCBCS-CC
T ss_pred             HHHHHHhCCCCccc---CCCCCcccCeEECcCC--cchhhhcccCCC-CceEEEEEEEecCCcccCCccccCCCCCC-CC
Confidence            99999999999887   7789999999999994  456899999988 99999999999999863     2222221 24


Q ss_pred             CCCCcccccCCCCCCcEEEEeecCCCcceeeceEEEEEec
Q 022829          155 TSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       155 ss~~YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                      +++.|||+||++.+|++||||+   ++||||||||+|+.+
T Consensus       158 ~~~~yDSvv~~~~~~~e~VVy~---~~qiyP~YlI~y~~~  194 (198)
T 2pqf_A          158 SNAFYDSCVNSVSDPSIFVIFE---KHQVYPEYVIQYTTS  194 (198)
T ss_dssp             --CBCSEEESCSSSCCEEEESC---GGGEEEEEEEEEESC
T ss_pred             CCCCcccCcCCCCCCCEEEEEC---CCcEeeEEEEEEEcC
Confidence            5678999999999999999998   679999999999987

>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}

Probab=100.00  E-value=1.8e-42  Score=300.79  Aligned_cols=166  Identities=17%  Similarity=0.254  Sum_probs=144.6

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhhH
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEI   80 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~v   80 (291)
                      |++|++++.||+.|++.|.+|++    ..+|++|+||     +|+.+|+.|+.+++.|.      .||++|||||+.+.+
T Consensus         7 l~~L~~~s~ey~~v~~~f~~t~~----~~~I~~I~rv-----~n~~~~~~f~~~k~~~~------~n~~~l~HGt~~~~~   71 (173)
T 2x5y_A            7 LSEIHHLHPEYVRVSEHFKASMK----NFKIEKIKKI-----ENSELLDKFTWKKSQMK------EEGKLLFYATSRAYV   71 (173)
T ss_dssp             EEECCTTSHHHHHHHHHHHTTCT----TEEEEEEEEE-----ECHHHHHHHHHHHHHHT------CCCEEEEEEEEGGGH
T ss_pred             EEECCCCCHHHHHHHHHHHhHCC----CCEEeEEEEE-----CCHHHHHHHHHHHHHHh------hCcEEEEecCCcccH
Confidence            57899999999999999999984    4799999999     78899999999988875      289999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCCCCcEEEEEEEEeeccceecCCCCCCCCCCCCCcc
Q 022829           81 NEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFD  160 (291)
Q Consensus        81 ~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~~G~r~m~LcRVL~G~~e~v~pgs~q~~pss~~YD  160 (291)
                      ..|+.+||+++.+   |.++++||+|+|||++  +..|+.||.+|. |.++||||||++|++....  +....|+ ..||
T Consensus        72 ~~I~~~Gf~~~~~---~~~g~~~G~GiYfa~~--~s~s~~Y~~~~~-~~~~m~lc~V~~G~~~~~~--~~~~~pp-~~yd  142 (173)
T 2x5y_A           72 ESICSNNFDSFLH---ETHENKYGKGIYFAKD--AIYSHKNCPYDA-KNVVMFVAQVLVGKFIEGN--ITYTSPP-PQFD  142 (173)
T ss_dssp             HHHHHHCCCHHHH---CCSCSSSCSSEEEESS--HHHHHHHCCSCG-GGEEEEEEEECCCSEEECC--TTCSSCC-TTCC
T ss_pred             HHHHHhCCCCccc---CCCcCCccCeEECCCC--hhhHhhcCCCCC-CCeEEEEEEEecCccccCC--cccCCCC-CCCC
Confidence            9999999998765   5689999999999984  557889999988 4599999999999965322  2233443 4699


Q ss_pred             cccCCCCCCcEEEEeecCCCcceeeceEEEEEe
Q 022829          161 SGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRV  193 (291)
Q Consensus       161 S~VDn~~nP~~fVVw~~~~ntqiyPEYlItfK~  193 (291)
                      |+||+..||++||||+   ++||||||||+|+.
T Consensus       143 Sv~~~~~~~~e~VV~~---~~q~~P~YlI~y~~  172 (173)
T 2x5y_A          143 SCVDTRSNPSVFVIFQ---KDQVYPQYVIEYTE  172 (173)
T ss_dssp             EEESCSSSCCEEEECC---GGGEEEEEEEEEEE
T ss_pred             ceECCCCCCCEEEEEe---CCeEeEEEEEEEeC
Confidence            9999999999999999   57999999999985

>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...

Probab=100.00  E-value=2.2e-40  Score=302.24  Aligned_cols=177  Identities=19%  Similarity=0.291  Sum_probs=149.7

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCC---------CCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceee
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLA---------ADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPA   71 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~---------~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~l   71 (291)
                      |++|++++.||+.|++.|.+||+...         ...+|++|+||     +|+.+|+.|+.++++|++++++..||++|
T Consensus        33 l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rI-----qn~~l~~~y~~~k~~m~~~~~~~~ne~~L  107 (240)
T 3u9h_A           33 LIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKV-----CNKKLWERYTHRRKEVSEENHNHANERML  107 (240)
T ss_dssp             EEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEE-----ECHHHHHHHHHHHHHHHHTTTTCCCEEEE
T ss_pred             EEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEe-----cCHhHHHHHHHHHHHHHHhcCCCCceEEE
Confidence            57899999999999999999997432         35799999999     88999999999999999998889999999


Q ss_pred             eecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCC--C------------CCCcEEEEEEEE
Q 022829           72 WFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSES--D------------EKGLRHILLCRV  137 (291)
Q Consensus        72 whGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~--d------------~~G~r~m~LcRV  137 (291)
                      ||||+  .+..||.+||+++..    .++++||+|+|||.+  +..|+.||..  |            .+|.++||||||
T Consensus       108 fHGt~--~~~~I~~~Gf~~~~~----~~g~~~G~GiYfa~~--~s~S~~y~~~~~~~~~~~~~~d~~~~~~~~~mlLc~V  179 (240)
T 3u9h_A          108 FHGSP--FVNAIIHKGFDERHA----YIGGMFGAGIYFAEN--SSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRV  179 (240)
T ss_dssp             EECCT--THHHHHHHCCCGGGC----BTTSTTCSBEEEESS--HHHHHTTTTSGGGTTCCTTTCCTTCSSSCEEEEEEEE
T ss_pred             EechH--hHHHHHHcCCCcccc----cCCCcceeeEEecCC--hhhhhhhhhccccccccccccccccccCceEEEEEEE
Confidence            99997  588999999999754    258999999999984  4567888753  1            137899999999


Q ss_pred             eeccceecCCCCCCCCCCCCCcccccCCCCCCc----EEEEeecCCCcceeeceEEEEEec
Q 022829          138 ILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPS----RYTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       138 L~G~~e~v~pgs~q~~pss~~YDS~VDn~~nP~----~fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                      ++|++.....+.....| ...|||+||+..+|.    .||||+   ++||||+|||+|+.+
T Consensus       180 ~lG~~~~~~~~~~~~~p-P~gyDSvvg~~~~~~l~~~E~VVy~---~~qi~P~YlI~y~~~  236 (240)
T 3u9h_A          180 TLGKSFLQFSAMKMAHS-PPGHHSVTGRPSVNGLALAEYVIYR---GEQAYPEYLITYQIM  236 (240)
T ss_dssp             ECCSEEEEEECC--CCC-CTTCSEEEEEESSCTTCCCEEEESC---GGGEEEEEEEEEEEC
T ss_pred             ecCceEeecCcccccCC-CCCCCceecCCCCCCCCCCEEEEEc---ccceeEEEEEEEEcc
Confidence            99998776544433333 368999999988874    899999   579999999999986

>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*

Probab=100.00  E-value=2.6e-33  Score=267.76  Aligned_cols=174  Identities=16%  Similarity=0.235  Sum_probs=137.2

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCC--CCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLA--ADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD   78 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~--~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~   78 (291)
                      |+.|++++.||..|++.|..|++..+  ...+|++|+||     +++..|+.|+.++        +..|+++|||||+.+
T Consensus       140 l~~L~~~s~Ey~~I~~~~~~t~~~~h~~~~~~I~~I~rV-----~~~~~~~~f~~~k--------~~~n~~~L~HGt~~~  206 (350)
T 1efy_A          140 IKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRI-----EREGESQRYKPFK--------QLHNRQLLWHGSRTT  206 (350)
T ss_dssp             EEECCTTSHHHHHHHHHHHHTCCGGGCSEEEEEEEEEEE-----EETTHHHHHGGGG--------GSSCEEEEEEEECGG
T ss_pred             EEEcCCCChHHHHHHHHHhcccCCCCCCCcccccceEEe-----cCHHHHHHHHHhh--------ccCCeeEEEeCCchH
Confidence            47899999999999999999986432  25789999999     6778899996431        357999999999999


Q ss_pred             hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccceecCCCCCCCCCCCC
Q 022829           79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKMEVIPRGSKQFHPTSL  157 (291)
Q Consensus        79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~e~v~pgs~q~~pss~  157 (291)
                      .+..||.+||++... .++.+|++||+|+|||..  +..|++||.++ ++|.++||||||++|++..+..+.. ......
T Consensus       207 n~~~Il~~Gf~~~~~-~~~~~g~~fG~GiYfa~~--~skS~~Y~~~~~~~~~~~m~Lc~V~lG~~~~~~~~~~-~~~~p~  282 (350)
T 1efy_A          207 NFAGILSQGLRIAPP-EAPVTGYMFGKGIYFADM--VSKSANYCHTSQADPIGLILLGEVALGNMYELKNASH-ITKLPK  282 (350)
T ss_dssp             GHHHHHHHCSCCCCT-TSCGGGSTTSSSEEEBSS--HHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCC-CCSCCT
T ss_pred             HHHHHHHcCCCcccc-cCCCccCceecccccccc--hhhhhccccCCCCCCeEEEEEEEEecCCceeccCcch-hhhcCC
Confidence            999999999987532 125678999999999984  55789999987 4899999999999999876543222 222234


Q ss_pred             Cccccc-------------------------------CCCCCCcEEEEeecCCCcceeeceEEEEEec
Q 022829          158 EFDSGV-------------------------------DNLCKPSRYTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       158 ~YDS~V-------------------------------Dn~~nP~~fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                      .|||++                               +.--++.+||||+   ++||||+|||+||..
T Consensus       283 g~~Sv~g~g~~~Pd~~~~~~~dgv~vP~G~~~~~~~~~~~l~~~EyVVYd---~~Qi~p~YLI~~~~~  347 (350)
T 1efy_A          283 GKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYD---VAQVNLKYLLKLKFN  347 (350)
T ss_dssp             TCCEEEECCSEEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESC---GGGEEEEEEEEEEEE
T ss_pred             CCcceeeccccCCCccccccCCCeeeecCcccCCCCCCCCCCCCEEEEEc---hhheeEEEEEEEEEE
Confidence            566633                               1233478999999   579999999999864

>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*

Probab=99.97  E-value=3.2e-32  Score=260.86  Aligned_cols=167  Identities=14%  Similarity=0.189  Sum_probs=131.1

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhhH
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEI   80 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~v   80 (291)
                      |+.|++++.||..|++.|..|+... ....|++|+||     +|+.+|+.|+.++        ...|+++|||||+.+.+
T Consensus       151 l~~L~~~s~Ey~~I~~~f~~t~~~~-~~~~I~~I~rV-----~n~~~~~rF~~~k--------~~~n~~~LfHGt~~~~~  216 (357)
T 3c4h_A          151 LQLLDSGAPEYKVIQTYLEQTGSNH-RCPTLQHIWKV-----NQEGEEDRFQAHS--------KLGNRKLLWHGTNMAVV  216 (357)
T ss_dssp             EEECCTTSTTHHHHHHHHHHHSCSS-SCCCEEEEEEE-----ECTTSHHHHHTTT--------TCCCEEEEEEEECHHHH
T ss_pred             EEECCCCChHHHHHHHHHHhcCCCC-CCccEEEEEEe-----cCHHHHHHHHHHh--------ccCCeEEEEeCCChhhH
Confidence            4689999999999999999994332 23799999999     6678899997542        25799999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCC--C-CCCCcEEEEEEEEeeccceecCCCCCC-CCCCC
Q 022829           81 NEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSE--S-DEKGLRHILLCRVILGKMEVIPRGSKQ-FHPTS  156 (291)
Q Consensus        81 ~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~--~-d~~G~r~m~LcRVL~G~~e~v~pgs~q-~~pss  156 (291)
                      ..||.+||+.+     +.+|++||+|+|||.+  +..|+.||.  + +++|.++||||||++|++..+..+... ..|+ 
T Consensus       217 ~~I~~~Gf~~~-----~~~g~~fG~GiYfa~~--~skS~~Y~~~~~~~~~~~~~mllc~V~lG~~~~~~~~~~~~~~pP-  288 (357)
T 3c4h_A          217 AAILTSGLRIM-----PHSGGRVGKGIYFASE--NSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPP-  288 (357)
T ss_dssp             HHHHHHCSCCC-----TTCCCTTCSSEEEBSS--HHHHHTTCCCEEETTEEEEEEEEEEEECCSEEEESSCCTTCSSCC-
T ss_pred             HHHHHcCCccc-----CCCCCceECCEecCCc--chhhhhhcccCCCCCCCeEEEEEEEEecCCceeccCCchhccCCC-
Confidence            99999999874     3479999999999984  557899998  5 578899999999999998654433221 1121 


Q ss_pred             CC---------------------ccc--ccCCC-------------CCCcEEEEeecCCCcceeeceEEEEE
Q 022829          157 LE---------------------FDS--GVDNL-------------CKPSRYTVWSCYMNSHIFVDYIVSFR  192 (291)
Q Consensus       157 ~~---------------------YDS--~VDn~-------------~nP~~fVVw~~~~ntqiyPEYlItfK  192 (291)
                      ..                     ||+  +++..             -++..||||+   ++||||+|||+||
T Consensus       289 ~g~dSv~g~g~~~P~~~~~~~~~~dg~~v~vp~G~~v~~~~~~~~~l~~nEyVVYd---~~Qv~p~YLi~~k  357 (357)
T 3c4h_A          289 PGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQ---ESQCRLRYLLEVH  357 (357)
T ss_dssp             TTCSEEEECCSEEECGGGCEEEEETTEEEEECCSCEEECGGGTTCSCSBCEEEESS---GGGEEEEEEEEEC
T ss_pred             CCCCccceecCCCCCcccceeeccCCCeEEecCCCcccCCCCCCCccCCCEEEEEc---hhheeEEEEEEEC
Confidence            23                     566  44322             2467999999   5799999999997

>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A

Probab=99.96  E-value=4.4e-30  Score=246.88  Aligned_cols=172  Identities=16%  Similarity=0.216  Sum_probs=137.0

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCC--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAA--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD   78 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~   78 (291)
                      |+.|++++.||..|++.|.+|+++.+.  ..+|++|.||     +++..|+.|+       +   ...|+++|||||+.+
T Consensus       158 l~~L~~~s~Ey~~I~~y~~~T~~~~h~~~~~~I~~IfrI-----~r~~e~~~F~-------k---~~~N~~lLwHGT~~~  222 (368)
T 3kjd_A          158 LRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEV-----EKDGEKEAFR-------E---DLHNRMLLWHGSRMS  222 (368)
T ss_dssp             EEECCTTSHHHHHHHHHHHHTCCTTCTTCEEEEEEEEEE-----EETTHHHHSC-------T---TCSCEEEEEEECCGG
T ss_pred             EEEcCCCChHHHHHHHHHHhcCCcccCcCceeEEEEEEe-----cchHHHHHHh-------h---cCCCceEEEeCCCHH
Confidence            468999999999999999999975432  5799999999     6678899997       1   256999999999999


Q ss_pred             hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccceecCCCCCC-CCCCC
Q 022829           79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKMEVIPRGSKQ-FHPTS  156 (291)
Q Consensus        79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~e~v~pgs~q-~~pss  156 (291)
                      .+..||.+||++... .++.+|++||+|+|||.+  +..|++||.++ .+|.++||||||++|++..+...... ..| .
T Consensus       223 n~~~Il~~Gf~~~~~-~~~~~g~~fGkGIYFA~~--~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~p-P  298 (368)
T 3kjd_A          223 NWVGILSHGLRIAHP-EAPITGYMFGKGIYFADM--SSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGL-L  298 (368)
T ss_dssp             GHHHHHHHCSCCCCT-TSCGGGSTTCSSEEEBSS--HHHHHHTTCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGG-C
T ss_pred             HHHHHHHcCCCcccc-cccccCceeeeEEEcccc--ccccccccCCCCCCCeEEEEEEEEecCCceeccccCcccccC-C
Confidence            999999999998542 126789999999999984  56789999987 78999999999999998765432211 122 3


Q ss_pred             CCcccccCC---------------------------CC-------CCcEEEEeecCCCcceeeceEEEEEec
Q 022829          157 LEFDSGVDN---------------------------LC-------KPSRYTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       157 ~~YDS~VDn---------------------------~~-------nP~~fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                      .-|||++--                           ..       +-..||||+   .+||.|.|||.+|..
T Consensus       299 ~G~dSv~g~G~~~P~~~~~~~~dgv~vP~G~~~~~~~~~~~~~~L~ynEyIVYd---~~Qir~rYLv~v~~~  367 (368)
T 3kjd_A          299 QGKHSTKGLGKMAPSSAHFVTLNGSTVPLGPASDTGILNPDGYTLNYNEYIVYN---PNQVRMRYLLKVQFN  367 (368)
T ss_dssp             TTCCEEEECEEEEECGGGCEEETTEEECCSCEEECCCCCSSSCCEEECEEEESS---GGGEEEEEEEEEEEE
T ss_pred             CCCceEEeeCCCcCCcccccccCCEEeeCCCcccCCCCCCcCccccCCceEEec---hhHeeEEEEEEEEeE
Confidence            578886632                           01       124799999   469999999999853

>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A

Probab=99.96  E-value=1.1e-28  Score=245.72  Aligned_cols=174  Identities=16%  Similarity=0.219  Sum_probs=139.1

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCC--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAA--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD   78 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~   78 (291)
                      |+.|++++.||..|++.|.+|+++...  ..+|++|.||     +++..|+.|+.++        ...|+|+|||||+..
T Consensus       285 l~~L~~~s~Ey~~I~~~~~~T~~~~h~~~~~~I~~I~rI-----~~~~e~~~f~~~k--------~~~N~~lL~HGT~~~  351 (506)
T 4dqy_C          285 IKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKI-----EREGECQRYKPFK--------QLHNRRLLWHGSRTT  351 (506)
T ss_dssp             EEECCTTCHHHHHHHHHHHHTCCSSCTTCCCCEEEEEEE-----EETTTTTTTHHHH--------SSSCEEEEEEECCTT
T ss_pred             EEECCCCChHHHHHHHHHHhccCcccccCCceeEeEEEE-----ccHHHHhhHHHhh--------cCCCceEEecCCChH
Confidence            478999999999999999999975332  5799999999     7788999998643        246899999999999


Q ss_pred             hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCC-CCcEEEEEEEEeeccceecCCCCCCCCCCCC
Q 022829           79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDE-KGLRHILLCRVILGKMEVIPRGSKQFHPTSL  157 (291)
Q Consensus        79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~-~G~r~m~LcRVL~G~~e~v~pgs~q~~pss~  157 (291)
                      .+..||.+||+++.. .++.+|++||+|+|||..  +..|++||.++. +|.++||||||++|++..+.....-..| ..
T Consensus       352 n~~~Il~~Gf~~~~~-~a~~~G~~fGkGiYFA~~--askS~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~~~~~-p~  427 (506)
T 4dqy_C          352 NFAGILSQGLRIAPP-EAPVTGYMFGKGIYFADM--VSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKL-PK  427 (506)
T ss_dssp             THHHHHHHCSCCCCS-SSCCTTCSSCSSEEEBSS--HHHHHTTSCCCSSSCEEEEEEEEEECCSEEEESSCCCCSSC-CT
T ss_pred             hHHHHHhcCCCcCCc-cCCcCCceeeeeEEecch--hhccccccCCCCCCCeEEEEEEEEecCCceecccchhhhcc-CC
Confidence            999999999998532 126788999999999984  557899999885 6899999999999997665432221222 36


Q ss_pred             CcccccCC-------------------------------CCCCcEEEEeecCCCcceeeceEEEEEec
Q 022829          158 EFDSGVDN-------------------------------LCKPSRYTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       158 ~YDS~VDn-------------------------------~~nP~~fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                      -|||++--                               --+-..||||+   .+||.|.|||.+|..
T Consensus       428 G~dSv~g~g~~~P~p~~~~~~dGv~vP~G~~~~~~~~~~~l~ynEyiVYd---~~Qir~rYLv~v~~~  492 (506)
T 4dqy_C          428 GKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYD---IAQVNLKYLLKLKFN  492 (506)
T ss_dssp             TCCEEEECCSEEECGGGCEESSSCEECCCCEEECSCCCCSCSBCEEEESS---GGGEEEEEEEEEECC
T ss_pred             CCceEEeCCcCcCCcccccccCCeEEECCCcccCCCCCCcccccceEEEc---hHHeeEEEEEEEEEE
Confidence            78986632                               01235899999   469999999999975

>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}

Probab=98.99  E-value=4e-09  Score=97.91  Aligned_cols=159  Identities=17%  Similarity=0.190  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhhHHHHHhcCC
Q 022829            9 MNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGF   88 (291)
Q Consensus         9 ~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~v~~I~~~GF   88 (291)
                      .||..+.+.....-.+......|-+|..-  .  ...++|+.+       +    +..|..+|||||..+.+-.|+.+|+
T Consensus       101 ~ef~~l~~~~g~~~~p~~~P~~If~V~~~--~--~~~~~f~~~-------~----~~~~~~~~~HGS~l~n~~sIL~~GL  165 (277)
T 4f0d_A          101 AEFEKIQKLTGAPHTPVPAPDFLFEIEYF--D--PANAKFYET-------K----GERDLIYAFHGSRLENFHSIIHNGL  165 (277)
T ss_dssp             HHHHHHHHHTCSCSSCCCCCSEEEEEEEC--T--THHHHHHHH-------H----TTSCEEEEEEECCGGGHHHHHHHCS
T ss_pred             HHHHHHHHHhCCCCCCCCCCceeEEEecC--c--chhhHHHHh-------h----ccCCcEEEEcCCcHHHHHHHHhccc
Confidence            46777766332211112234577777633  1  223444432       1    2346899999999999999999999


Q ss_pred             CCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCC------CC--cEEEEEEEEeecccee---cCCCCCC-CCCCC
Q 022829           89 SQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDE------KG--LRHILLCRVILGKMEV---IPRGSKQ-FHPTS  156 (291)
Q Consensus        89 ~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~------~G--~r~m~LcRVL~G~~e~---v~pgs~q-~~pss  156 (291)
                      .....     +|.+||+|+|||.+  ...|..||....      -|  .+.|.||-|+..--..   ....+.. .+..+
T Consensus       166 ~~~~~-----~g~~fG~GiY~a~~--~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p~~k~q~~~~~~~~~~~~~~  238 (277)
T 4f0d_A          166 HCHLN-----KTSLFGEGTYLTSD--LSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDVKCQTKKKDSKEIDRRRA  238 (277)
T ss_dssp             CCC-------CCCSSSCCEEEBSC--HHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCCC------------------
T ss_pred             ccCcc-----cccccCCceEeecc--hHHHhhhccCCCCcCcccccccceEEEEEEEecCCcceeeeecccccccccccc
Confidence            76432     68999999999986  456778886532      23  5899999999742211   1111111 01234


Q ss_pred             CCcccccCCCCCCcEEEEeecCCCcceeeceEEEEEe
Q 022829          157 LEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRV  193 (291)
Q Consensus       157 ~~YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItfK~  193 (291)
                      ..+||.=.++ .++.|||=+   +..+-.-||.-|-.
T Consensus       239 ~~~~s~~~~~-p~~y~vV~n---~~~v~~rYllvy~~  271 (277)
T 4f0d_A          239 RIKHSEGGDI-PPKYFVVTN---NQLLRVKYLLVYSQ  271 (277)
T ss_dssp             -------------CCEEECC---GGGEEEEEEEEEEC
T ss_pred             ccccccCCCC-CCCEEEEEc---cceEEEEEEEEEcc
Confidence            5677744443 344677754   67999999998843

>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}

Probab=80.58  E-value=4.3  Score=30.13  Aligned_cols=55  Identities=13%  Similarity=0.127  Sum_probs=43.8

Q ss_pred             HHHHHHhccC-ChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh-hHHHHHHHHHH
Q 022829          212 TLMAIFSRFL-HPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG-DKLLFTVTKFY  266 (291)
Q Consensus       212 ~L~~~l~~~l-~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG-D~lL~~~ik~~  266 (291)
                      ..|..+++.+ ++.......++.+.|+++.|+|.++|.++..+.| ..=|..-.+.+
T Consensus        13 ~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pdL~~~Fk~F   69 (75)
T 2ld7_B           13 LFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNF   69 (75)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3477777777 6788889999999999999999999999999998 33454444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1efya2	215	d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase	7e-08
d1gs0a2	217	d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,	7e-04

>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.7 bits (118), Expect = 7e-08
 Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 23/181 (12%)

Query: 30  RILALHKNSCSSLIARARLDSFKIFA------NAVAKKCGGNANIRPAWFGASRDEINEI 83
            I    KN+ ++      L   +IF       +   K      N +  W G+       I
Sbjct: 17  IIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGI 76

Query: 84  VCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLCRVILGKME 143
           +  G  +     A   G M G G+       S +      S    +  ILL  V LG M 
Sbjct: 77  LSQGL-RIAPPEAPVTGYMFGKGIYFAD-MVSKSANYCHTSQADPIGLILLGEVALGNMY 134

Query: 144 VIPRGSKQFHP--------------TSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVD-YI 188
            +   S                         + +D +  P    + +   ++ +  + YI
Sbjct: 135 ELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYI 194

Query: 189 V 189
           V
Sbjct: 195 V 195

>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 64  GNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSE 123
              N    W G+       I+ HG  +     A   G M G G+    ++S         
Sbjct: 55  DLPNRMLLWHGSRLSNWVGILSHGL-RVAPPEAPITGYMFGKGIYFADMSSKSANY-CFA 112

Query: 124 SDEKGLRHILLCRVILGKMEVIPRGSKQFH 153
           S  K    +LL  V LG+   +   + +  
Sbjct: 113 SRLKNTGLLLLSEVALGQCNELLEANPKAQ 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1efya2	215	Poly(ADP-ribose) polymerase, C-terminal domain {Ch	100.0
d1gs0a2	217	Poly(ADP-ribose) polymerase, C-terminal domain {Mo	100.0
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	81.6

>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.9e-36  Score=266.48  Aligned_cols=175  Identities=15%  Similarity=0.271  Sum_probs=139.4

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCC--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAA--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD   78 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~   78 (291)
                      |..|+++|.||+.|+++|.+|+++...  ..+|++|+||     +++.+|+.|+..+        ...|+|+|||||+.+
T Consensus         5 i~~l~~~S~eyk~I~~~f~~t~~~~~~~~~~~I~~I~rI-----~~~~~~~~f~~~~--------~~~n~~~LfHGt~~~   71 (215)
T d1efya2           5 IKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRI-----EREGESQRYKPFK--------QLHNRQLLWHGSRTT   71 (215)
T ss_dssp             EEECCTTSHHHHHHHHHHHHTCCGGGCSEEEEEEEEEEE-----EETTHHHHHGGGG--------GSSCEEEEEEEECGG
T ss_pred             EEECCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEE-----cCcchHHHHHHhh--------ccCcEEEEEecCCHH
Confidence            357999999999999999999975322  4689999999     7788999996321        357899999999999


Q ss_pred             hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccceecCCCCCCCCCC--
Q 022829           79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKMEVIPRGSKQFHPT--  155 (291)
Q Consensus        79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~e~v~pgs~q~~ps--  155 (291)
                      .+..|+.+||+++... ++.++++||+|+|||..  +..|+.||.++ .+|.++||||||++|++...++++.-..|+  
T Consensus        72 ~~~~Il~~Gf~~~~~~-~~~~g~~~G~GiYfa~~--~s~S~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~~~~~p~g  148 (215)
T d1efya2          72 NFAGILSQGLRIAPPE-APVTGYMFGKGIYFADM--VSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHITKLPKG  148 (215)
T ss_dssp             GHHHHHHHCSCCCCTT-SCGGGSTTSSSEEEBSS--HHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCCCCSCCTT
T ss_pred             HHHHHHHcCCCCCccc-ccccCcceeeeEEecCc--cchhhccccCCccCCeeEEEEEEEEecceEEecCccccccCCCC
Confidence            9999999999976431 26678999999999963  66789999887 489999999999999987665443222221  


Q ss_pred             ------------CCCcccccCCCCCC----------------cEEEEeecCCCcceeeceEEEEEec
Q 022829          156 ------------SLEFDSGVDNLCKP----------------SRYTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       156 ------------s~~YDS~VDn~~nP----------------~~fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                                  +..+|+.+|++..|                .+||||+   +.|+||||||+||..
T Consensus       149 ~~s~~~~g~~~pd~~~~~~~d~v~vP~g~~~~~~~~~~~~~~~EyVVy~---~~Q~~p~YLI~~k~~  212 (215)
T d1efya2         149 KHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYD---VAQVNLKYLLKLKFN  212 (215)
T ss_dssp             CCEEEECCSEEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESC---GGGEEEEEEEEEEEE
T ss_pred             ccccccccccCCChhhccccCCeeccCCCccccCCcCCccccCEEEEEe---chhEeEEEEEEEEEE
Confidence                        12455666777666                4699999   579999999999975

>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-33  Score=249.13  Aligned_cols=173  Identities=17%  Similarity=0.231  Sum_probs=135.5

Q ss_pred             CcccCCCChhHHHHHHHHHhccCCCCC--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829            1 MVKIEEGDMNHYLVKKCFLSGMGPLAA--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD   78 (291)
Q Consensus         1 lv~L~~~s~ey~~V~~~F~~~m~~~~~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~   78 (291)
                      |++|+++|.||+.|++.|.+|+++...  ..+|+.|+|+     +++..|+.|+          ....|+++|||||+.+
T Consensus         5 i~~l~~~s~ey~~I~~~~~~t~~~~~~~~~~~I~~I~~v-----~r~~e~~~~~----------~~~~n~~~LfHGT~~~   69 (217)
T d1gs0a2           5 LRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEV-----EKEGEKEAFR----------EDLPNRMLLWHGSRLS   69 (217)
T ss_dssp             EEECCTTSHHHHHHHHHHHHTCCTTCCSEEEEEEEEEEE-----EETTHHHHSC----------TTCSCEEEEEEEECGG
T ss_pred             EEEcCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEE-----cchhHHHHhh----------hcCCceEEEEecccHH
Confidence            468999999999999999999875432  3579999999     5556666663          1467999999999999


Q ss_pred             hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccceecCCC--------C
Q 022829           79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKMEVIPRG--------S  149 (291)
Q Consensus        79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~e~v~pg--------s  149 (291)
                      .+..|+.+||+++.. .++++|++||+|+|||..  +..|+.||.++ .+|.++||||||++|++..+..+        .
T Consensus        70 n~~~Il~~Gf~~~~~-~~~~~g~~fG~GiYfa~~--~s~s~~y~~~~~~~~~~~m~l~~V~lG~~~~~~~~~~~~~~~p~  146 (217)
T d1gs0a2          70 NWVGILSHGLRVAPP-EAPITGYMFGKGIYFADM--SSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLR  146 (217)
T ss_dssp             GHHHHHHHCSCCCCS-SSCGGGSTTSSSEEEBSC--HHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCT
T ss_pred             HHHHHHHcCCCCCCc-cCcccceeeeccceeccc--cccccccccCCcCCCeEEEEEEEEEecceeeeccCCcccccCCC
Confidence            999999999998654 126789999999999974  56789999877 47899999999999996332111        0


Q ss_pred             ----------CCCC------------CCCCCcccccCCCCCCcE----EEEeecCCCcceeeceEEEEEec
Q 022829          150 ----------KQFH------------PTSLEFDSGVDNLCKPSR----YTVWSCYMNSHIFVDYIVSFRVV  194 (291)
Q Consensus       150 ----------~q~~------------pss~~YDS~VDn~~nP~~----fVVw~~~~ntqiyPEYlItfK~~  194 (291)
                                ....            |.+..+||++++..++..    ||||+.   .||||+|||.||..
T Consensus       147 g~~sv~~~g~~~p~p~~~~~~~g~~vp~g~~~~s~~~~~~~~~l~~nEyVVy~~---~Qv~~~YLi~~k~~  214 (217)
T d1gs0a2         147 GKHSTKGMGKMAPSPAHFITLNGSTVPLGPASDTGILNPEGYTLNYNEFIVYSP---NQVRMRYLLKIQFN  214 (217)
T ss_dssp             TCSEEEECCSEECCGGGCEEETTEEECCSCCEECCCCCSSSCCCSBCEEEESCG---GGEEEEEEEEEEEE
T ss_pred             CcceeeecccccCChhhccccCCeeccCCCccccCccCCCCCccccCeEEEEch---hheeEEEEEEEEEE
Confidence                      0001            233567888888887765    999995   69999999999965

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.60  E-value=0.5  Score=34.49  Aligned_cols=47  Identities=13%  Similarity=0.080  Sum_probs=38.7

Q ss_pred             ccHHHHHHHHhc-cCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 022829          208 KGIQTLMAIFSR-FLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVT  254 (291)
Q Consensus       208 ~~F~~L~~~l~~-~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~Iv  254 (291)
                      +++..+-..+.+ .||.+.+..|-..++.=+.|+|+++||+..||.|.
T Consensus        28 i~~~e~~~~l~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~Li~   75 (99)
T d1qjta_          28 VLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVA   75 (99)
T ss_dssp             CCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCcHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHH
Confidence            445555555544 79999999999999999999999999999999774