Citrus Sinensis ID: 022848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccccccccccccccccccccccEEEEEccccccHcccccccccccccccccHHHHccccccccccccHHEEEEEcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHcHccHHcccccccEEc
Coil and Loop (DISEMBL)
MSSVLNTVLSTRLsnvkstnrvrtrpvlspvsvsfsrrrltvraqepnanevkpqapdkapaasgssfnqlLGIKGAAQETNKWKIRlqltkpvtwppliwgIVCGaaasgnfhwNLEDVAKSIVCMImsgpcltgytqtiNDWYDREIDainepyrpipsgaisenEVITQIWVLLLAGLGLAGlldvwaghdfptIFWLAVGGSLLSYiysapplklkqngwignFALGasyislpwwagqalfgtltpDIIVLTLLYSIAGLGIAIVNdfksvegdramglqvSSILL
Flexible Loop (DISEMBL)
mssvlntvlstrlsnvkstnrvrtrpvlspvsvsfsrrrltvraqepnanevkpqapdkapaASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGdramglqvssill
Low Complexity Region (SEG)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVlllaglglagllDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL
Disordered region (IsUnstruct)
**********************************************************************LLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVE**************
Disordered Region (DISOPRED)
************************************************************************************KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL
Disordered Region (DISEMBL)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQE*******************SSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL
Disordered Region (DISPRO)
**********************************FSRRR***R*Q*****************************KGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q38833	387	Chlorophyll synthase, chl	yes	no	0.975	0.733	0.762	1e-124
Q9M3W5	378	Chlorophyll synthase, chl	N/A	no	0.876	0.674	0.830	1e-118
Q5W6H5	376	Chlorophyll synthase, chl	yes	no	0.872	0.675	0.848	1e-118
P33326	310	Bacteriochlorophyll synth	yes	no	0.683	0.641	0.427	1e-38
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.670	0.645	0.349	2e-28
P26170	304	Bacteriochlorophyll synth	yes	no	0.652	0.625	0.365	5e-28
A0B8A0	267	Digeranylgeranylglyceryl	yes	no	0.460	0.501	0.370	5e-11
O27170	281	Digeranylgeranylglyceryl	yes	no	0.604	0.626	0.299	9e-11
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.481	0.498	0.337	4e-10
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.673	0.507	0.302	6e-10

>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/299 (76%), Positives = 254/299 (84%), Gaps = 15/299 (5%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
           M+S+LNTV +   S V S +RV    + +  SV F+RRR                VRA E
Sbjct: 1   MTSILNTVSTIHSSRVTSVDRVGVLSLRNSDSVEFTRRRSGFSTLIYESPGRRFVVRAAE 60

Query: 47  PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
            + ++VK Q PDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct: 61  TDTDKVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query: 107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
           AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct: 120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query: 167 NEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
            EVITQ+WVLLL GLG+AG+LDVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct: 180 PEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query: 227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 298

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a or b with a preference for geranylgeranyldiphosphate (GGPP) rather than for phytyldiphosphate (PhyPP).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 2

>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/260 (83%), Positives = 233/260 (89%), Gaps = 5/260 (1%)

Query: 30  PVSVSFSRRRL--TVRAQEPNANEV--KPQAPDKAPAASGSSFNQLLGIKGAAQETNKWK 85
           P S++ +RRR    V A + +A E   KP  PDKAPAA GSSFNQLLGIKGA QETN WK
Sbjct: 31  PSSLTLNRRRSFPVVCAADADAKETTKKPTIPDKAPAA-GSSFNQLLGIKGAKQETNIWK 89

Query: 86  IRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWY 145
           IRLQLTKPVTWPPL+WG++CGAAASGNFHW +EDV KSIVCM+MSGPCLTGYTQTINDWY
Sbjct: 90  IRLQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVTKSIVCMLMSGPCLTGYTQTINDWY 149

Query: 146 DREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGG 205
           DR+IDAINEPYRPIPSGAISENEVITQIWVLLL GLGL  LLD+WAGHDFP IF+LA+GG
Sbjct: 150 DRDIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLGALLDIWAGHDFPIIFYLALGG 209

Query: 206 SLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGL 265
           SLLSYIYSAPPLKLKQNGWIGNFALGASYI LPWWAGQALFGTLTPDI+VLT LYSIAGL
Sbjct: 210 SLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTCLYSIAGL 269

Query: 266 GIAIVNDFKSVEGDRAMGLQ 285
           GIAIVNDFKS+EGDR +GLQ
Sbjct: 270 GIAIVNDFKSIEGDRTLGLQ 289

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a with either geranylgeranyldiphosphate (GGPP) or phytyldiphosphate (PhyPP). May also use with a lower efficiency the monophosphates GGMP and PhyMP, but not the non-phosphorylated alcohols geranylgeraniol and phytol. The tetraprenyl diphosphate must bind to the enzyme as the first substrate and esterification occurs when this pre-loaded enzyme meets the second substrate, chlorophyllide.

Avena sativa (taxid: 4498)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLG PE=2 SV=1

 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/258 (84%), Positives = 232/258 (89%), Gaps = 4/258 (1%)

Query: 30  PVSVSFSRRRL--TVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIR 87
           P S+  +RRR    VRA E +  E K  AP+KAPA  GSSFNQLLGIKGA QE + WKIR
Sbjct: 32  PSSLRLNRRRHFQVVRAAETD-KETKANAPEKAPAG-GSSFNQLLGIKGAKQENDIWKIR 89

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           LQLTKPVTWPPL+WG++CGAAASGNFHW +EDVAKSIVCMIMSGPCLTGYTQTINDWYDR
Sbjct: 90  LQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 149

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
           +IDAINEPYRPIPSGAISENEVITQIW LLLAGLGL  LLDVWAGHDFP IF+LAVGGSL
Sbjct: 150 DIDAINEPYRPIPSGAISENEVITQIWALLLAGLGLGALLDVWAGHDFPIIFYLAVGGSL 209

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGI 267
           LSYIYSAPPLKLKQNGWIGNFALGASYI LPWWAGQALFGTLTPDI+VLT LYSIAGLGI
Sbjct: 210 LSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTSLYSIAGLGI 269

Query: 268 AIVNDFKSVEGDRAMGLQ 285
           AIVNDFKSVEGDRA+GLQ
Sbjct: 270 AIVNDFKSVEGDRALGLQ 287

Involved in one of the last steps of the biosynthesis of chlorophyll a.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|P33326|BCHG_CHLAA Bacteriochlorophyll synthase 34 kDa chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=bchG PE=4 SV=2

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 120/208 (57%), Gaps = 9/208 (4%)

Query: 79  QETNKWKIR-LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGY 137
           Q    W +R +QL KPVTW    W  +CGA ASG   WN E + + ++ M M+GP L G 
Sbjct: 23  QSRYAWLVRSIQLMKPVTWFAPTWAFMCGAIASGALGWN-ESIGRLLLGMFMAGPILCGL 81

Query: 138 TQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
           +Q +ND+ DRE+DAINEP+R IPSG +S   V     VL   G  +A  L          
Sbjct: 82  SQVVNDYADREVDAINEPHRLIPSGQVSLRHVYILTAVLTWIGASIALFLGR------QV 135

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLT 257
            F++A+G  + +  YS  P++ K+NGWIGN  +  SY  L W AG A F  LT + + + 
Sbjct: 136 AFFVALG-LVFALAYSLRPIRGKRNGWIGNALVAISYEGLAWMAGHAAFAPLTGESVTIA 194

Query: 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           LLYS+   GI  VNDFKS+ GD  MG++
Sbjct: 195 LLYSLGAHGIMTVNDFKSIRGDTIMGIR 222

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 11/206 (5%)

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           L+L +P+TW P IW  +CG  + G   W  E     ++ M+++GP + G +Q  N+W DR
Sbjct: 19  LELIQPITWFPPIWAYLCGTVSVGI--WPGEKWPLVLLGMVLAGPLVCGMSQAANNWCDR 76

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
            +DA+NEP RPIPSG I     +    ++ +  L +  +L  W        F   V G L
Sbjct: 77  HVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLGPWG-------FGATVFGVL 129

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLT--LLYSIAGL 265
            ++ YS  P++LK++GW G   +   Y  LPW+ G A+     P   ++T  LLY+    
Sbjct: 130 AAWAYSVEPIRLKRSGWWGPGLVALCYEGLPWFTGAAVLSAGAPSFFIVTVALLYAFGAH 189

Query: 266 GIAIVNDFKSVEGDRAMGLQVSSILL 291
           GI  +NDFK++EGDR  G++   ++L
Sbjct: 190 GIMTLNDFKALEGDRQHGVRSLPVML 215

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4 SV=1

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 18/208 (8%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144
           +  L+L KPVTW P +W  +CGA +S    W  E+    ++ ++++GP + G +Q  NDW
Sbjct: 17  RAMLELIKPVTWFPPMWAYLCGAVSSNVPIW--ENKGVVVLGIVLAGPIVCGMSQAANDW 74

Query: 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLA-GLGLAGLLDVWAGHDFPTIFWLAV 203
            DR +DAINEP+RPIPSG I        +W L +A  + L  L+  W    +   F   +
Sbjct: 75  CDRHVDAINEPHRPIPSGRIP------GLWGLYIAIAMSLLSLVVGWQLGSWG--FVATL 126

Query: 204 GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD------IIVLT 257
            G   ++ YS  P++LK++GW G   +G +Y  LPW  G A+    T D      I+++ 
Sbjct: 127 LGVAAAWAYSVEPIRLKRSGWWGPGLVGLAYEGLPWITGAAVL-LATADTSPGFPIVMMA 185

Query: 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
            LY++   GI  +NDFK++EGDR +G++
Sbjct: 186 TLYALGAHGIMTINDFKAIEGDRKLGIK 213

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 82/154 (53%), Gaps = 20/154 (12%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
           +TG    IND++DREIDA+N P RPIPSG IS    +     L +AG  +AGL++     
Sbjct: 46  ITGGGNAINDYFDREIDAVNRPDRPIPSGRISPRAALIWSVALFIAGCLIAGLIN----- 100

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTL--TP 251
              +   LA+  S +  IY+A   +LK     GN A+  SY++   +    LFG L  +P
Sbjct: 101 --QSCLALALLNSFVLIIYAA---RLKGLPVAGNIAI--SYLTGTTF----LFGGLAASP 149

Query: 252 DIIV--LTLLYSIAGLGIAIVNDFKSVEGDRAMG 283
             I   L++L ++A L   IV D + + GD A G
Sbjct: 150 SSITAFLSILSALATLSREIVKDIEDLPGDLAHG 183

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanosaeta thermophila (strain DSM 6194 / PT) (taxid: 349307)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 21/197 (10%)

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           +++ +PV     +  ++  A  +G F +++  +  S+V         TG    IND++D 
Sbjct: 5   IEILRPVNAVMAVITVMLMALITGRFDFSV--LLASVVVF-----TATGAGNVINDYFDH 57

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
           EIDAIN P RPIPSG IS    +  ++ ++L    LA L+  + G   P +  + V  SL
Sbjct: 58  EIDAINRPERPIPSGRISRG--VAGVYSIIL--FALASLMGFYLGL-LPGL--VVVSSSL 110

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTLTPDIIVLTLLYSIAGLG 266
           L   Y+    +LK+   +GN  +  S+++ L +  G  + G +   I+ L     +  + 
Sbjct: 111 LMVYYA---WRLKKRCLVGNITI--SFLTGLSFVFGGIVLGEVRASIL-LGFYAFLMTMA 164

Query: 267 IAIVNDFKSVEGDRAMG 283
             IV D + VEGDRA G
Sbjct: 165 REIVKDMEDVEGDRAEG 181

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 139 QTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTI 198
             IND+YD EIDAIN+PYRPIPSG IS+ E +     L L G+ L+  L           
Sbjct: 53  NAINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFLGFIE------- 105

Query: 199 FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258
           F +    SL  Y Y+     LK+ G  GN AL +  ++     G    G LT  +I+ + 
Sbjct: 106 FLIVTAFSLSWYAYAR---WLKRTGVPGN-ALVSLGVAFTLIFGSLAAGNLTNKVIIFSS 161

Query: 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQVSSI 289
           +   + L    V   + + GDRA G++  ++
Sbjct: 162 VAFTSNLIREFVKAVEDLPGDRAHGVRTIAV 192

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 106/241 (43%), Gaps = 45/241 (18%)

Query: 76  GAAQETNKWKIRLQLTKPVTW----PPLIWGIVCGAAA--SGNFHWNLEDVAKSIVCMIM 129
           GAA+  +    R+   +   W    P  I G   G+ A  +     N   +  S+V   +
Sbjct: 75  GAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKAL 134

Query: 130 SG----PCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAG 185
           SG     C  GY   IN  YD  ID +N+PY PI +G +S    +   W LL+    +AG
Sbjct: 135 SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAW-LLVIFFAIAG 189

Query: 186 LLDVWAGHDF-PTIFWLAVGGSLLSYIYSAPPLKLKQ------------NGWIGNFAL-- 230
           LL V  G +F P I  L   G  L  IYS PPL++K+             G++ NF +  
Sbjct: 190 LLVV--GFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYH 247

Query: 231 -GASYISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSS 288
              + + LP+ W+    F         +T   ++  L IAI  D   VEGDR    Q+S+
Sbjct: 248 ATRAALGLPFQWSAPVAF---------ITSFVTLFALVIAITKDLPDVEGDRK--FQIST 296

Query: 289 I 289
           +
Sbjct: 297 L 297

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
338173751	374	chlorophyll synthase [Camellia sinensis]	0.975	0.759	0.877	1e-137
449461765	373	PREDICTED: chlorophyll synthase, chlorop	0.975	0.761	0.870	1e-134
225439386	370	PREDICTED: chlorophyll synthase, chlorop	0.962	0.756	0.863	1e-133
356568120	377	PREDICTED: chlorophyll synthase, chlorop	0.979	0.755	0.826	1e-131
358248480	377	uncharacterized protein LOC100787459 [Gl	0.979	0.755	0.829	1e-131
224087768	372	predicted protein [Populus trichocarpa]	0.972	0.760	0.842	1e-130
228535376	373	chlorophyll synthase [Nicotiana tabacum]	0.975	0.761	0.824	1e-128
228535374	373	chlorophyll synthase [Nicotiana tabacum]	0.975	0.761	0.828	1e-128
356559140	378	PREDICTED: chlorophyll synthase, chlorop	0.979	0.753	0.809	1e-126
297819886	387	ATG4/CHLG/G4 [Arabidopsis lyrata subsp.	0.975	0.733	0.772	1e-124

>gi|338173751|gb|AEI83422.1| chlorophyll synthase [Camellia sinensis]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/286 (87%), Positives = 270/286 (94%), Gaps = 2/286 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQAPDK 59
           M+S+LNTV S RLSN K TNR+RTR V  P+S+S +RRRLTVRA E +ANE +K +APDK
Sbjct: 1   MASLLNTVSSIRLSNAK-TNRLRTRTVPPPISLSLTRRRLTVRATETDANEAIKAEAPDK 59

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
           AP ASGSSFNQLLGIKGA QET+KWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW L+D
Sbjct: 60  APVASGSSFNQLLGIKGAKQETDKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTLDD 119

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           VAKSIVCM+MSGPCLTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 
Sbjct: 120 VAKSIVCMLMSGPCLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLG 179

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GLGLAGLLDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGW+GNFALGASYISLPW
Sbjct: 180 GLGLAGLLDVWAGHDFPTIFYLAIGGSLLSYIYSAPPLKLKQNGWLGNFALGASYISLPW 239

Query: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 285

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461765|ref|XP_004148612.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Cucumis sativus] gi|449517004|ref|XP_004165536.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Cucumis sativus]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/285 (87%), Positives = 265/285 (92%), Gaps = 1/285 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+  LNT+ S RLS++ + NRVR +  LSPVSVSFSRRRL+V A E +ANEVK +A DKA
Sbjct: 1   MALTLNTLPSLRLSSIHA-NRVRFQSSLSPVSVSFSRRRLSVVAAETDANEVKSKASDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PA  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW +EDV
Sbjct: 60  PAGGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTIEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSI CM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL G
Sbjct: 120 AKSIACMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAGLLDVWAGHDFPT+F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGLLDVWAGHDFPTVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439386|ref|XP_002263271.1| PREDICTED: chlorophyll synthase, chloroplastic [Vitis vinifera] gi|296083177|emb|CBI22813.3| unnamed protein product [Vitis vinifera]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/286 (86%), Positives = 264/286 (92%), Gaps = 6/286 (2%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQAPDK 59
           M+S+LNTV S RLSN ++T R      L P+S+S  RRRL VRA E +ANE VK QAPDK
Sbjct: 1   MASLLNTVSSVRLSNARTTPRF-----LPPISLSLHRRRLVVRAAETDANEAVKSQAPDK 55

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
           APA SGS+FNQLLGIKGAA+ETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWNLED
Sbjct: 56  APAGSGSNFNQLLGIKGAAKETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNLED 115

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           VAKSIVCMIMSGPCLTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIW+LLL 
Sbjct: 116 VAKSIVCMIMSGPCLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWLLLLG 175

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GLGLAGLLDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW
Sbjct: 176 GLGLAGLLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 235

Query: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           WAGQALFGTL PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 236 WAGQALFGTLNPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568120|ref|XP_003552261.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Glycine max]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/288 (82%), Positives = 263/288 (91%), Gaps = 3/288 (1%)

Query: 1   MSSVLNTV-LSTRLS--NVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAP 57
           M+S+LN V + +R+S  +   T  +++RPVL P SVSFSRRRL++RA E + NEV+ QAP
Sbjct: 1   MASLLNMVSVPSRISPSSHTRTTSLQSRPVLPPFSVSFSRRRLSIRATETDTNEVQSQAP 60

Query: 58  DKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNL 117
             AP+  GSSFNQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN 
Sbjct: 61  GTAPSKDGSSFNQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNF 120

Query: 118 EDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177
           EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL
Sbjct: 121 EDVAKSIVCMMMSGPFLTGYTQTMNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 180

Query: 178 LAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237
           L GL LAG+LD+WAGHDFP +F+LAVGG+LLSYIYSAPPLKLKQNGWIGNFALGASYISL
Sbjct: 181 LGGLSLAGILDIWAGHDFPIVFYLAVGGALLSYIYSAPPLKLKQNGWIGNFALGASYISL 240

Query: 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 241 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248480|ref|NP_001239633.1| uncharacterized protein LOC100787459 [Glycine max] gi|255647387|gb|ACU24159.1| unknown [Glycine max]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/288 (82%), Positives = 260/288 (90%), Gaps = 3/288 (1%)

Query: 1   MSSVLNTV-LSTRLSNVKSTN--RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAP 57
           M+S+LN V +  R+S    T    ++ RPVL P SVSFSRRRL++RA E + NEV+ QAP
Sbjct: 1   MASLLNMVSVPPRISPTSHTRIASLQARPVLPPFSVSFSRRRLSIRATETDTNEVQSQAP 60

Query: 58  DKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNL 117
             AP+  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN 
Sbjct: 61  GAAPSKDGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNF 120

Query: 118 EDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177
           EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL
Sbjct: 121 EDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 180

Query: 178 LAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237
           L GL LAG+LD+WAGHDFP +F+LAVGG+LLSYIYSAPPLKLKQNGWIGNFALGASYISL
Sbjct: 181 LGGLSLAGILDIWAGHDFPIVFYLAVGGALLSYIYSAPPLKLKQNGWIGNFALGASYISL 240

Query: 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 241 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087768|ref|XP_002308227.1| predicted protein [Populus trichocarpa] gi|118486377|gb|ABK95029.1| unknown [Populus trichocarpa] gi|222854203|gb|EEE91750.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/285 (84%), Positives = 262/285 (91%), Gaps = 2/285 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+SVLN+ LS  LSN KS  RVRT  ++SP+S+  +RRR+T+RA + + NEVKPQAP   
Sbjct: 1   MASVLNSALSLNLSNFKS-KRVRTHSLVSPLSLPLTRRRVTIRAADTDTNEVKPQAPVSG 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
             A GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNF+W LEDV
Sbjct: 60  -GAGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFNWTLEDV 118

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSIVCM+MSGP LTGYTQTIND+YDREIDAINEPYRPIPSGAISENEVITQ+WVLLL G
Sbjct: 119 AKSIVCMLMSGPFLTGYTQTINDYYDREIDAINEPYRPIPSGAISENEVITQLWVLLLGG 178

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAGLLDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 179 LGLAGLLDVWAGHDFPVVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 238

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKS+EGDRA+GLQ
Sbjct: 239 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQ 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|228535376|gb|ACQ44245.1| chlorophyll synthase [Nicotiana tabacum]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/285 (82%), Positives = 257/285 (90%), Gaps = 1/285 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+S+LN+V S +LSN  + N +R+  + SP  +S SRRRL VRA E +  EVK QAPDKA
Sbjct: 1   MASLLNSVPSIKLSNFSNNNPLRSSQISSPFCLSLSRRRLVVRATETD-KEVKAQAPDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PAA GSS NQ+LGIKGA QET+KWKIR+QLTKPVTWPPL+WG+VCGAAASGNFHW  EDV
Sbjct: 60  PAAGGSSINQILGIKGAKQETDKWKIRVQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKS+VCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAIS  EVI QIWVLLL G
Sbjct: 120 AKSVVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISGQEVINQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAG+LDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGILDVWAGHDFPTIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           AGQALFGTLTPDIIVLTLLYS+AGLGIAIVNDFKS+EGDRAMGLQ
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSVAGLGIAIVNDFKSIEGDRAMGLQ 284

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|228535374|gb|ACQ44244.1| chlorophyll synthase [Nicotiana tabacum]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/285 (82%), Positives = 257/285 (90%), Gaps = 1/285 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+S+LN+V S +LSN  + N +R+  + SP  +SFSRRRL VRA E +  EVK QAPDKA
Sbjct: 1   MASLLNSVPSIKLSNFSNNNPLRSSQISSPFCLSFSRRRLVVRATETD-KEVKAQAPDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PAA GSS NQ+LGIKGA QET+KWKIR+QLTKPVTWPPL+WG+VCGAAASGNFHW  EDV
Sbjct: 60  PAAGGSSINQILGIKGAKQETDKWKIRVQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSIVCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAIS  EVI QIWVLLL G
Sbjct: 120 AKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISGQEVINQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAG+LDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGILDVWAGHDFPTIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           AGQALFGTLTPDIIVLTLLYS+AGLGIAIVNDFKS+EGDRAM LQ
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSVAGLGIAIVNDFKSIEGDRAMRLQ 284

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559140|ref|XP_003547859.1| PREDICTED: chlorophyll synthase, chloroplastic-like isoform 1 [Glycine max]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/289 (80%), Positives = 257/289 (88%), Gaps = 4/289 (1%)

Query: 1   MSSVLNTV-LSTRLSNVKST--NRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQA 56
           M+S+LN V +  R+S    T    ++ RPVL   SVSFSRRR ++RA E + NE ++ QA
Sbjct: 1   MASLLNMVSVPPRISPTSHTRITSLQARPVLPAFSVSFSRRRQSIRATETDTNEAIQSQA 60

Query: 57  PDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWN 116
           P  AP+  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN
Sbjct: 61  PGAAPSKDGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWN 120

Query: 117 LEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVL 176
            EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYR IPSGAISENEVITQIWVL
Sbjct: 121 FEDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRSIPSGAISENEVITQIWVL 180

Query: 177 LLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236
           LL GL LAG+LD+WAGHDFP +F+LAVGG++LSYIYSAPPLKLKQNGWIGNFALGASYIS
Sbjct: 181 LLGGLSLAGILDIWAGHDFPIVFYLAVGGAILSYIYSAPPLKLKQNGWIGNFALGASYIS 240

Query: 237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 241 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819886|ref|XP_002877826.1| ATG4/CHLG/G4 [Arabidopsis lyrata subsp. lyrata] gi|297323664|gb|EFH54085.1| ATG4/CHLG/G4 [Arabidopsis lyrata subsp. lyrata]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/299 (77%), Positives = 255/299 (85%), Gaps = 15/299 (5%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
           M+S+LNTV S   S V S +RV      +P SV F+RRR                VRA E
Sbjct: 1   MTSILNTVSSIHSSRVTSVDRVGVLSHRNPDSVEFTRRRSGFSTSFFESPGRRFVVRAAE 60

Query: 47  PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
            + ++VK QAPDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct: 61  TDTDKVKSQAPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query: 107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
           AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct: 120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query: 167 NEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
            EVITQ+WVLLL GLG+AG+LDVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct: 180 QEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query: 227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.975	0.733	0.732	8.2e-115
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.701	0.519	0.274	6.3e-06
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.556	0.412	0.252	0.00092

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 219/299 (73%), Positives = 243/299 (81%)

Query:     1 MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
             M+S+LNTV +   S V S +RV    + +  SV F+RRR                VRA E
Sbjct:     1 MTSILNTVSTIHSSRVTSVDRVGVLSLRNSDSVEFTRRRSGFSTLIYESPGRRFVVRAAE 60

Query:    47 PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
              + ++VK Q PDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct:    61 TDTDKVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query:   107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
             AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct:   120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query:   167 NEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
              EVITQ+WV            DVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct:   180 PEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query:   227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
             NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct:   240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQ 298

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 64/233 (27%), Positives = 96/233 (41%)

Query:    76 GAAQETNKWKIRLQLTKPVTW----PPLIWGIVCGAAA--SGNFHWNLEDVAKSIVCMIM 129
             GAA+  +    R+   +   W    P  I G   G+ A  +     N   +  S+V   +
Sbjct:    82 GAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKAL 141

Query:   130 SGP----CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXX 185
             SG     C  GY   IN  YD  ID +N+PY PI +G +S    +   W+          
Sbjct:   142 SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWLLVIFFAIAGL 197

Query:   186 XXDVWAGHDF-PTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL-----PW 239
                   G +F P I  L   G  L  IYS PPL++K+   +  F + A+          +
Sbjct:   198 LV---VGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFP-VAAFLIIATVRGFLLNFGVY 253

Query:   240 WAGQALFGT---LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSI 289
              A +A  G     +  +  +T   ++  L IAI  D   VEGDR    Q+S++
Sbjct:   254 HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKF--QISTL 304

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00092, P = 0.00092
 Identities = 46/182 (25%), Positives = 77/182 (42%)

Query:   120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXX 179
             + +++V  +M    + G    +N   D EID +N+PY P+ SG  S N   T I +    
Sbjct:   138 ILEAVVAALMMNIYIVG----LNQLSDVEIDKVNKPYLPLASGEYSVN---TGIAIVASF 190

Query:   180 XXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIGNF---ALGASY 234
                       W    +P +FW      +L   YS   P L+ K+   +      A+ A  
Sbjct:   191 SIMSFWLG--WIVGSWP-LFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAII 247

Query:   235 ISLPWWAG-QA-LFGT---LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSI 289
             + + ++   Q  +FG     T  +I  T   S   + IA+  D   +EGD+  G++  S+
Sbjct:   248 VQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSV 307

Query:   290 LL 291
              L
Sbjct:   308 TL 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      291       279   0.00081  115 3  11 22  0.37    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  215 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.29u 0.09s 20.38t   Elapsed:  00:00:01
  Total cpu time:  20.29u 0.09s 20.38t   Elapsed:  00:00:01
  Start:  Fri May 10 22:38:01 2013   End:  Fri May 10 22:38:02 2013

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5W6H5	CHLG_ORYSJ	2, ., 5, ., 1, ., 6, 2	0.8488	0.8728	0.6755	yes	no
Q9M3W5	CHLG_AVESA	2, ., 5, ., 1, ., 6, 2	0.8307	0.8762	0.6746	N/A	no
Q38833	CHLG_ARATH	2, ., 5, ., 1, ., 6, 2	0.7625	0.9759	0.7338	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.62	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038863001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (370 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016328001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa)	•		•	•		•	•		0.936
	GSVIVG00015396001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (534 aa)				•		•	•		0.936
	GSVIVG00025838001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (399 aa)				•		•	•		0.925
	GSVIVG00027634001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (396 aa)				•		•	•		0.925
	CHLH	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1390 aa)	•		•	•			•		0.924
	GSVIVG00021145001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (345 aa)				•		•			0.905
	GSVIVG00016740001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (517 aa)						•			0.899
	GSVIVG00018037001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (328 aa)	•		•	•			•		0.890
	GSVIVG00002992001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)			•	•			•		0.882
	GSVIVG00017359001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa)	•		•	•		•	•		0.879

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	0.0
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-143
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	1e-115
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	1e-88
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	9e-47
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	4e-36
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	8e-25
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	3e-18
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	3e-17
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	3e-17
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	7e-15
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-14
COG0109	304	COG0109, CyoE, Polyprenyltransferase (cytochrome o	2e-09
TIGR01473	280	TIGR01473, cyoE_ctaB, protoheme IX farnesyltransfe	2e-07
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	3e-07
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	3e-06
PRK04375	296	PRK04375, PRK04375, protoheme IX farnesyltransfera	4e-06
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	5e-06
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	1e-05
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	1e-05
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	6e-04
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	7e-04
PLN02922	315	PLN02922, PLN02922, prenyltransferase	9e-04
PRK12869	279	PRK12869, ubiA, protoheme IX farnesyltransferase;	0.001
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	0.001

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score =  512 bits (1319), Expect = 0.0
 Identities = 223/284 (78%), Positives = 249/284 (87%), Gaps = 2/284 (0%)

Query: 4   VLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAA 63
           V +  L++ +  ++++ R R     S +S    RRRL VRA E + ++VK QAPDKAP  
Sbjct: 3   VADRSLASSMQALRASARSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEK 62

Query: 64  S--GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVA 121
           S  GS+ NQLLGIKGAAQET+ WKIRLQLTKPVTWPPL+WG++CGAAASGNFHW LEDVA
Sbjct: 63  SDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWTLEDVA 122

Query: 122 KSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGL 181
           KSIVCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL GL
Sbjct: 123 KSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL 182

Query: 182 GLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241
           GLA  LDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGN+ALGASYISLPWWA
Sbjct: 183 GLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWA 242

Query: 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           GQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKS+EGDRA+GLQ
Sbjct: 243 GQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQ 286

Length = 375

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score =  403 bits (1037), Expect = e-143
 Identities = 173/217 (79%), Positives = 198/217 (91%), Gaps = 1/217 (0%)

Query: 70  QLLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMI 128
           QLLGIKGAA  ETN WKIRLQL KP+TW PLIWG+VCGAAASGNFHW+LEDVAK+ +CM+
Sbjct: 1   QLLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCML 60

Query: 129 MSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188
           +SGPCLTGYTQTIND+YDR+IDAINEPYRPIPSGAISE EVITQI +L +AG+ +A +LD
Sbjct: 61  LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILD 120

Query: 189 VWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT 248
           +WAGH+FP +F LA+ GS +++IYSAPPLKLKQNGW+GNFALGASYI+LPWWAG ALFG 
Sbjct: 121 LWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALFGE 180

Query: 249 LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           L PDI VLTL+YSIAGLGIAIVNDFKSVEGDRA+GLQ
Sbjct: 181 LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQ 217

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score =  333 bits (856), Expect = e-115
 Identities = 123/228 (53%), Positives = 157/228 (68%), Gaps = 9/228 (3%)

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
               + S   QLLG KGA+  T+ WK RLQL KP+TW P +W  +CGA +SG F W LE+
Sbjct: 3   EALENTSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLEN 62

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           V K +  M+++GP L G +QT+ND++DRE+DAINEPYRPIPSGAIS   V+  I VL + 
Sbjct: 63  VLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVL 122

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GL +A LL  W       +F  A+ G  L++IYSAPPL+LKQNGW+GN+A+G SY  LPW
Sbjct: 123 GLAVAYLLGPW-------VFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPW 175

Query: 240 WAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           WAG A FG   P   I++L LLYS+   GI  +NDFKSVEGDR +GL+
Sbjct: 176 WAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLR 223

Length = 314

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score =  265 bits (679), Expect = 1e-88
 Identities = 99/201 (49%), Positives = 130/201 (64%), Gaps = 6/201 (2%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144
           +  ++L KPVTW P IW   CGA ASG      E     ++ M+M+GP  TG++Q+IND+
Sbjct: 1   RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDY 60

Query: 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVG 204
           +DR++DAINEP RPIPSG IS  EV     VL +AGL +A +L  W       I    V 
Sbjct: 61  FDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWL------IVLFTVV 114

Query: 205 GSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264
           G +L+ IYS PP+KLK+NGW+G  A+G SY  LPW AG A+F  LT   +V+ L+YS+  
Sbjct: 115 GIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGA 174

Query: 265 LGIAIVNDFKSVEGDRAMGLQ 285
            GI  +NDFKSVEGDR +GL+
Sbjct: 175 HGIMTLNDFKSVEGDRQLGLR 195

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score =  159 bits (404), Expect = 9e-47
 Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 3/207 (1%)

Query: 81  TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQT 140
            +K +  L+L  PVTW  +   +  G  ASG     L D    +   +M GP  TG++Q+
Sbjct: 9   VDKIRAHLELLDPVTWISVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQS 68

Query: 141 INDWYDREIDAINEPYRPIPSGAISENE-VITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199
           +ND++D E+D +NEP RPIPSG +SE E +   I VLLLA +GL   L +  G +   + 
Sbjct: 69  VNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLA-IGLGVWLGLHIGGERGMVI 127

Query: 200 WLAV-GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258
             ++  G  ++YIYSAPPLKLK+N      A+G SY  + + +  ALF  + P+++ L  
Sbjct: 128 ISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAG 187

Query: 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           L     + + I+NDFKSVEGD+  GL+
Sbjct: 188 LNFFMAIALIIMNDFKSVEGDKEGGLK 214

Length = 331

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score =  130 bits (329), Expect = 4e-36
 Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 17/210 (8%)

Query: 84  WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
               L+L +P+    L+   + G   + +   +L+ +  + +               IND
Sbjct: 13  LLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFF----LARSAGYVIND 68

Query: 144 WYDREIDAINEP--YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
             DREID IN     RP+PSG +S  E +    +LLL GL LA LL+  A       F L
Sbjct: 69  LADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLA-------FLL 121

Query: 202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYS 261
           ++   +L+  Y      LK+  ++    LG ++         A+ G+L     +L L   
Sbjct: 122 SLAALVLALAY----PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAI 177

Query: 262 IAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291
           +  LG  I+   + +EGDR  GL+   +L 
Sbjct: 178 LWTLGYDIIYAIQDIEGDRKAGLKSLPVLF 207

Length = 289

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 99.9 bits (249), Expect = 8e-25
 Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 13/196 (6%)

Query: 98  PLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEP 155
           PL    V    A          +   ++  ++    L      +ND++D EIDA   N+P
Sbjct: 2   PLALLPVLAGLALAAGGVLDLLLLLLLLLALL---LLQAAGNVLNDYFDYEIDADNPNKP 58

Query: 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAP 215
            RP+PSG IS  E +     LLL GL LA LL          +  L + G LL  +YS P
Sbjct: 59  DRPLPSGRISPREALLLGLALLLLGLLLALLLGPL-------LLLLGLLGLLLGLLYS-P 110

Query: 216 PLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKS 275
           PL+LK+   +G   +G ++  L      A+ G +   +++L L   +  L I + ND + 
Sbjct: 111 PLRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRD 170

Query: 276 VEGDRAMGLQVSSILL 291
           VEGDR  G++   + L
Sbjct: 171 VEGDRKAGIRTLPVRL 186

Length = 259

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 135 TGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD 194
           TG    IND++DREID IN P RPIPSGA+S    +    +L  AG+ LA LL       
Sbjct: 51  TGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLA- 109

Query: 195 FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTP-DI 253
                 +A+  SLL  +Y+     LK    +GN ++     S  +  G A  GT     +
Sbjct: 110 ------IALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGST-FLFGGAAVGTEGLLAL 159

Query: 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
           +VL  L ++A L   I+ D + +EGDRA G +
Sbjct: 160 LVLFALAALATLAREIIKDVEDIEGDRAEGAR 191

Length = 276

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 19/154 (12%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
            +G    +ND++D E+D IN P RPIPSG IS  E +    +L + GL  A L+   A  
Sbjct: 49  ASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLA-- 106

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGN----FALGASYISLPWWAGQALFGTL 249
                F + +  S+L  +Y+    KLK+ G IGN    F  G ++I      G    G L
Sbjct: 107 -----FLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFI-----FGGIAVGEL 153

Query: 250 TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMG 283
              +I+L  +  +  LG  I+ D + VEGDR  G
Sbjct: 154 NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRG 187

Length = 279

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 19/185 (10%)

Query: 100 IWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP 158
           I  I+    AS          +A  +V ++            IND YD EID IN+P RP
Sbjct: 20  IGAIIGYLIASNFKIDLKGIILAALVVFLV------CAGGNVINDIYDIEIDKINKPERP 73

Query: 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLK 218
           IPSG IS  E       L + GL L+  ++++A       F +A+  S+L Y+Y+     
Sbjct: 74  IPSGRISLKEAKIFSITLFIVGLILSIFINIYA-------FLIALLNSILLYLYA---KD 123

Query: 219 LKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG 278
           LK+ G IGN  + A    L +  G      +   II+L L    +     IV D + +EG
Sbjct: 124 LKKTGLIGNL-IVAYLTGLSFIFGGLAVFNVLR-IIILFLCAFFSTWSREIVKDIEDIEG 181

Query: 279 DRAMG 283
           D    
Sbjct: 182 DLKEN 186

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 72.5 bits (178), Expect = 7e-15
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 22/157 (14%)

Query: 140 TINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199
           TIND++D EID IN P RP+P GA+S    +    +L   GL LA L+++ A       F
Sbjct: 55  TINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEA-------F 107

Query: 200 WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA-----LFGTLTPDII 254
             A+G  +L ++Y+    KLK   +IGN  +     + P +   A     L G L     
Sbjct: 108 LFALGAYVLMFLYA---WKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLA---- 160

Query: 255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291
           +   L ++A     I+ D + +EGD+A G +   I++
Sbjct: 161 ICAFLVNVAR---EIMKDIEDIEGDKAKGAKTLPIII 194

Length = 277

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 31/207 (14%)

Query: 100 IWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTG--YTQTINDWYDREIDAINEPYR 157
           + G+   A A+ +    L ++   +   I    CL G  Y   +N   D EID IN+P+ 
Sbjct: 32  VLGLYLIAIAASSNTIALANLGLLLGAWI---ACLCGNVYIVGLNQLTDIEIDRINKPHL 88

Query: 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPP 216
           P+ +G  S  +    + +  +  L LA LL  W          + VG SLL    YS PP
Sbjct: 89  PLAAGEFSRRQGQRIVIITGILALILAALLGPW--------LLITVGISLLIGTAYSLPP 140

Query: 217 LKLKQ------------NGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264
           ++LK+             G I N  L   ++   W  G +    + P + +LTL   +  
Sbjct: 141 IRLKRFPLLAALCIFTVRGVIVNLGL---FLHFQWLLGGS--VLIPPTVWLLTLFVLVFT 195

Query: 265 LGIAIVNDFKSVEGDRAMGLQVSSILL 291
             IAI  D   +EGDR   +   ++ L
Sbjct: 196 FAIAIFKDIPDMEGDRQYQITTFTLRL 222

Length = 308

>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 34/189 (17%)

Query: 83  KWKIRLQLTKPVTWPPLIWGIVCGA--AASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQT 140
             K  LQLTKP     L+     G   A  G+ +  L      ++  ++ G    G    
Sbjct: 17  TIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPLL------LLLTLLGGALGAGGAGA 70

Query: 141 INDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVW-AGHDFPT 197
            N + DR+IDA+ E    RP+ +G IS  E +    VL +AG  L   L    A      
Sbjct: 71  FNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAA----- 125

Query: 198 IFWLAVGGSLLSY--IYSAPPLKLK----QNGWIGNFALGASYISLPWWAG-QALFGTLT 250
              L + G +  Y  +Y+   L LK    QN  IG FA GA    +P   G  A+ G+++
Sbjct: 126 --VLGLFG-IFFYVVVYT---LWLKRRTPQNIVIGGFA-GA----MPPLIGWAAVTGSIS 174

Query: 251 PDIIVLTLL 259
              I+L  +
Sbjct: 175 LGAILLFAI 183

Length = 304

>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 21/181 (11%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAA-ASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
           K  LQLTKP     L+     G   A G    N   +  +++   ++           N 
Sbjct: 1   KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAA----ASANAFNM 56

Query: 144 WYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
           + DR+ID   +    RP+ +G IS  E +   + LLL  LG+A L    A  +       
Sbjct: 57  YIDRDIDKKMKRTRNRPLVTGRISPREAL--AFGLLLGVLGVAIL---AAFVNPLAALLG 111

Query: 202 AVGGSLLSYIYSAPPLKLK--QNGWIGNFALGASYISLPWWAG-QALFGTLTPDIIVLTL 258
             G      +Y+   LK +  QN  IG FA GA    +P   G  A+ G+++    +L  
Sbjct: 112 LFGIFFYVIVYTI-WLKRRTPQNTVIGGFA-GA----VPPLIGWAAVTGSISLGAWLLFA 165

Query: 259 L 259
           +
Sbjct: 166 I 166

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 280

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 47/160 (29%), Positives = 63/160 (39%), Gaps = 22/160 (13%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGL-AGLLDVWAG 192
              Y   IN   D E D IN+P R       SE +      +L + GL L A LL V  G
Sbjct: 50  AAVYI--INYLTDLEEDIINKPER----VVFSETKAYGLFLLLNVLGLYLGAYLLAVIGG 103

Query: 193 HDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWWAGQALFGTL-- 249
              P    + +   +L  +YS     +LK+     N       +SL W     + G    
Sbjct: 104 ---PKFALIFIIPLILGILYSVFFKRRLKRIPLFKNL-----VVSLLWALSPLILGVYYY 155

Query: 250 TPDIIVLTLLYS----IAGLGIAIVNDFKSVEGDRAMGLQ 285
              I  L LLY+    +      IV D K +EGDR  GL+
Sbjct: 156 QLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLK 195

Length = 285

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 17/155 (10%)

Query: 141 INDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFW 200
           +ND +D + D +N             +  +    V L   L LA LL +      P   W
Sbjct: 64  VNDVFDADTDELNPKKDREREVRYRGDRRVLVA-VALSGALALAFLLVL------PPAAW 116

Query: 201 LAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALF-GTLTPDIIVLTL 258
            A+   L LS  YSAPPL+ K    + +      YI LP  A  AL  G+L P + V   
Sbjct: 117 PALLAFLVLSVEYSAPPLRFKTTPVL-DSLSNGLYI-LPGVAAYALVSGSLPPLLAVAGG 174

Query: 259 LYSIAGLGI--AIVNDFKSVEGDRAMGLQVSSILL 291
                G+    AI +    +E DRA G++ ++ +L
Sbjct: 175 WLWAMGMHTFSAIPD----IEPDRAAGIRTTATVL 205

Length = 282

>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 35/170 (20%)

Query: 77  AAQETNKWKIRLQLTKPVTWPPLIWGIVCGA--AASGNFHWNLEDVAKSIVCMIMSGPCL 134
           ++      K  L LTKP      ++  + G   A  G     L      ++  ++    +
Sbjct: 3   SSSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLLL------LLLTLLGIALV 56

Query: 135 TGYTQTINDWYDREIDAI-----NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDV 189
            G    +N++ DR+IDA      N   RP+ +G IS  E +    VL + G  L GL   
Sbjct: 57  AGAAGALNNYIDRDIDAKMERTKN---RPLVTGRISPREALIFGLVLGVLGFLLLGLFVN 113

Query: 190 W-AGHDFPTIFWLAVGGSLLSY--IYSAPPLKLK----QNGWIGNFALGA 232
             A        WL + G +  Y  +Y+   L LK    QN  IG  A GA
Sbjct: 114 PLAA-------WLTLAG-IFFYVVVYT---LWLKRRTPQNIVIGGAA-GA 151

Length = 296

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
            IND +DR+ D   E    RP+ SGA+S  + I  + V LL  LG+   L+       P 
Sbjct: 58  VINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLN-------PL 110

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA--SYISLPWWAGQALFGTLTPDIIV 255
              L V    L   Y   P  +K+  +     LG    + +L  WA  A+ G L+    V
Sbjct: 111 TILLGVASLALVATY---PF-MKRITYWPQLVLGLAFGWGALMGWA--AVTGDLSTAAWV 164

Query: 256 L 256
           L
Sbjct: 165 L 165

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
            IND+ DR+ D   +    RP+ SGA+SE E +    VL+L    L   L+         
Sbjct: 60  VINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLN-------TL 112

Query: 198 IFWLAVGGSLLSYIY 212
             WL+V    L++IY
Sbjct: 113 TIWLSVAALALAWIY 127

Length = 282

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 19/151 (12%)

Query: 140 TINDWYDREIDAIN--EPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
             N   DR IDA N     RP+ SG IS+ E  T I + L   L  +  L+  A      
Sbjct: 54  AFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLA------ 107

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT----LTPDI 253
            F L+    L+  IY       K+  ++ ++ LG++Y   P     A+ GT    L   +
Sbjct: 108 -FILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGLAPLAGWVAVIGTISFFLVAWL 162

Query: 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL 284
           + + + + IAG    ++   +  E DR  GL
Sbjct: 163 LGIGVGFWIAGFD--LIYAIQDYEFDRKNGL 191

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 27/219 (12%)

Query: 79  QETNKWKIRLQLTKPVTWP----PLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCL 134
           Q+T+K ++ L+L +P T P    P+I G         +F+        +++ +I +    
Sbjct: 3   QKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LVALLALIAAILLQ 57

Query: 135 TGYTQTINDWYD--REIDAINEPYRPIPSGAISENEVIT-QIWVLLLAGL-GLAGLLDVW 190
                  ND++D  +  D  + P R   SG I    +    I  L L  L GLA L  + 
Sbjct: 58  IL-VNLANDYFDYKKGTDT-HGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVIL 115

Query: 191 AGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG--ASYISLPWWAGQALFGT 248
           A      +  L +       +Y+  P  L   G++G   LG     +          +  
Sbjct: 116 AALSDWLVLLLGLLCIAAGILYTGGPFPL---GYMG---LGEIFVGVFFGPLIVLGAYYI 169

Query: 249 LTPDIIVLTLLYSIA-GLGIAIV---NDFKSVEGDRAMG 283
            T  +    LL S+  G+ IA +   N+ + +E D   G
Sbjct: 170 QTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNG 208

Length = 303

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 16/169 (9%)

Query: 133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAG 192
            +  Y   +N  YD EID +N+PY P+ SG  S    +  +    +   G+  ++  W  
Sbjct: 34  LMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWP- 92

Query: 193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIGNF---ALGASYISLPWWA--GQAL 245
                +FW      +L   YS   P L+ K++         A+ A  + L ++      +
Sbjct: 93  -----LFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHV 147

Query: 246 FG---TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291
            G     T  +I  T       + IA+  D   VEGDR  G++  S+ L
Sbjct: 148 LGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRL 196

Length = 280

>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 14/115 (12%)

Query: 181 LGLAGLLDVWAGHDFPTI-FWLAVGGS-LLSYIYSAPPLKLKQNGW--------IGNFAL 230
           LG AGL  VWA      I   L +  + L  Y+Y  PP +L   G          G  A 
Sbjct: 108 LGAAGL--VWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLAT 165

Query: 231 GASYISLPWWAGQALFGT--LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMG 283
            A Y++L   AG +      LTP ++  ++L  +    I   + F  ++GDRA+G
Sbjct: 166 TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVG 220

Length = 315

>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 20/170 (11%)

Query: 97  PPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NE 154
           P +IW +   A A              ++ +++ G   +G +   N   +R+ID +    
Sbjct: 11  PRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRT 70

Query: 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSA 214
             RP P G ++  E +     L   G  L  LL          +F +A+G    + +Y+ 
Sbjct: 71  SKRPTPVGLVNRKEALAVGSALSALGTALGFLLL----GPLTALF-IALGWFFYAVVYT- 124

Query: 215 PPLKLKQNGW----IGNFALGASYISLPWWAGQALF-GTLTPDIIVLTLL 259
             + LK   W    IG FA  A+       AG A   G+L  + ++L+ L
Sbjct: 125 --IWLKPRTWLNIVIGGFAGNAAA-----LAGYASGTGSLDLEAVLLSFL 167

Length = 279

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 141 INDWYDREIDAINEP---YRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188
           +ND  D E D    P    RPI SG +S +       VLL+A L LA LL 
Sbjct: 65  VNDIRDVEADR-LHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLS 114

Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PLN00012	375	chlorophyll synthetase; Provisional	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	99.98
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.98
PRK12884	279	ubiA prenyltransferase; Reviewed	99.98
PRK13595	292	ubiA prenyltransferase; Provisional	99.98
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.97
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.97
PRK12874	291	ubiA prenyltransferase; Reviewed	99.97
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
PRK12895	286	ubiA prenyltransferase; Reviewed	99.97
PRK12886	291	ubiA prenyltransferase; Reviewed	99.97
PLN02922	315	prenyltransferase	99.97
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.97
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.97
PRK13106	300	ubiA prenyltransferase; Reviewed	99.97
PRK12888	284	ubiA prenyltransferase; Reviewed	99.97
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.97
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.97
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.97
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.97
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.97
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.97
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.96
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.96
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.96
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.96
PRK13105	282	ubiA prenyltransferase; Reviewed	99.96
PRK12873	294	ubiA prenyltransferase; Reviewed	99.96
PRK12876	300	ubiA prenyltransferase; Reviewed	99.96
PLN02878	280	homogentisate phytyltransferase	99.95
PRK12871	297	ubiA prenyltransferase; Reviewed	99.95
PRK12875	282	ubiA prenyltransferase; Reviewed	99.94
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.94
PRK12872	285	ubiA prenyltransferase; Reviewed	99.94
PLN02776	341	prenyltransferase	99.93
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.93
PRK13591	307	ubiA prenyltransferase; Provisional	99.89
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.88
PRK08238	479	hypothetical protein; Validated	99.88
PRK13592	299	ubiA prenyltransferase; Provisional	99.86
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.8
KOG4581	359	consensus Predicted membrane protein [Function unk	99.7
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.69
PRK13591	307	ubiA prenyltransferase; Provisional	94.36
PRK12888	284	ubiA prenyltransferase; Reviewed	92.86
PRK12872	285	ubiA prenyltransferase; Reviewed	92.63
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	92.37
PLN00012	375	chlorophyll synthetase; Provisional	92.3
PRK12884	279	ubiA prenyltransferase; Reviewed	92.17
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	91.75
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	91.7
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	91.68
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	91.47
PRK12392	331	bacteriochlorophyll c synthase; Provisional	91.21
PRK12875	282	ubiA prenyltransferase; Reviewed	91.05
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	91.01
PRK12874	291	ubiA prenyltransferase; Reviewed	90.89
PRK12871	297	ubiA prenyltransferase; Reviewed	90.62
COG3476	161	Tryptophan-rich sensory protein (mitochondrial ben	89.79
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	89.79
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.47
PRK12886	291	ubiA prenyltransferase; Reviewed	88.81
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	88.24
PRK12895	286	ubiA prenyltransferase; Reviewed	88.02
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	87.37
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.08
PRK12882	276	ubiA prenyltransferase; Reviewed	87.05
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	86.89
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	86.62
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	86.61
PRK13106	300	ubiA prenyltransferase; Reviewed	86.42
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	85.47
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	85.41
PRK12873	294	ubiA prenyltransferase; Reviewed	83.72
PRK13592	299	ubiA prenyltransferase; Provisional	83.06
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	82.49
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	81.1
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	80.49
PLN02922	315	prenyltransferase	80.05

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=8.6e-50  Score=379.73  Aligned_cols=271  Identities=81%  Similarity=1.345  Sum_probs=241.0

Q ss_pred             ccccccCCCCcccccccchhhhhccCCCCCCCCCCCCCCCC--CCCCcchhhhhccccccccchhHHHHHhhhCccchHH
Q 022848           21 RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAP--AASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPP   98 (291)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~l~RP~~~~~   98 (291)
                      +.+++...++.+...++||..+|+++++.+++++++|++++  .++++++|||+|+||++.|++++|+|++++||++|+.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~   99 (375)
T PLN00012         20 RSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEKSDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPP   99 (375)
T ss_pred             hhccCCCCCCcccccccccceeeecCCcchhhhhcCCCCCccccccchhhHHhhCCCCcccchHHHHHHHHHhCHHHHHH
Confidence            45555666777788899999999999999999999888844  4789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHH
Q 022848           99 LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  178 (291)
Q Consensus        99 ~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~  178 (291)
                      .++++++|++..+.++|....+...++++++++.++++++|++|||+|+|+|++|+|+||+++|++++++++.+++++++
T Consensus       100 ~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~  179 (375)
T PLN00012        100 LVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  179 (375)
T ss_pred             HHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHH
Confidence            99999999997777777544444456777888899999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHHHHhhCCCCHHHHHHHH
Q 022848          179 AGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL  258 (291)
Q Consensus       179 l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l  258 (291)
                      +++++++++..+.++.+|..+.+++++++++|+||.||+++||++++||+.+|..++.+|++++++++|.+++..+++++
T Consensus       180 ~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal  259 (375)
T PLN00012        180 GGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTL  259 (375)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            88888888765544456777888888888999999999999999999999999999999988888889999999889999


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          259 LYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       259 ~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +++++..++++.||++|+|+|+++|++|+||++
T Consensus       260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~  292 (375)
T PLN00012        260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAF  292 (375)
T ss_pred             HHHHHHHHHHHHhhhcchhhHHHcCCcccceee
Confidence            999999999999999999999999999999975

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=1.8e-39  Score=302.66  Aligned_cols=222  Identities=78%  Similarity=1.361  Sum_probs=194.2

Q ss_pred             hhhcccccc-ccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 022848           70 QLLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE  148 (291)
Q Consensus        70 ~~~~~~~~~-~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~  148 (291)
                      |+.+++|.+ .+++++|+|++++||++++.+++++++|+..++.++|...+....++++++++.++++++|++|||+|+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d   80 (306)
T TIGR02056         1 QLLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRD   80 (306)
T ss_pred             CCCCcccccccchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence            455666664 5668899999999999999999999999988777776432222334555667789999999999999999


Q ss_pred             hhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhH
Q 022848          149 IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNF  228 (291)
Q Consensus       149 ~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l  228 (291)
                      .|+.|+|+||+++|++++++++.+++.+.++++++++++..+.+..+|.++.+++++.+++++||.||+++||++++|++
T Consensus        81 ~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i  160 (306)
T TIGR02056        81 IDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNF  160 (306)
T ss_pred             hhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHH
Confidence            99999999999999999999999999999999999988876655446778888888999999999999999999988999


Q ss_pred             HHHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          229 ALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       229 ~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+|..++.+|++++++++|++++..+++++++++|..++++.||++|+|+|+++|+||+|+++
T Consensus       161 ~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~l  223 (306)
T TIGR02056       161 ALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAF  223 (306)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhc
Confidence            999999888988878888999998889999999999999999999999999999999999975

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=5.5e-39  Score=300.35  Aligned_cols=218  Identities=56%  Similarity=0.988  Sum_probs=187.6

Q ss_pred             chhhhhccccccccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022848           67 SFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYD  146 (291)
Q Consensus        67 ~~~~~~~~~~~~~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D  146 (291)
                      .-||++|-||+++++++++.|++++||+++..++++.++|++.++.++|........++++++++.+.++++|++|||+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D   89 (314)
T PRK07566         10 KPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFD   89 (314)
T ss_pred             ccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            34799999999999999999999999999999999999998877666554221223345566778889999999999999


Q ss_pred             hhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchh
Q 022848          147 REIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG  226 (291)
Q Consensus       147 ~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g  226 (291)
                      +|+|++|+|+||+++|++|+++++.++.++.++++.+++.++       +..+.+++++.+++++||.||+++||++++|
T Consensus        90 ~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~-------~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g  162 (314)
T PRK07566         90 REVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG-------PWVFLAALLGLFLAWIYSAPPLRLKQNGWLG  162 (314)
T ss_pred             cCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHC-------hHHHHHHHHHHHHHHHhcCCccccccccchh
Confidence            999999999999999999999999999998888888777654       4566777778888999999999999999889


Q ss_pred             hHHHHHHHhHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          227 NFALGASYISLPWWAGQALF--GTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       227 ~l~~g~~~g~lp~l~g~a~~--g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      |+++|++++.+|+++++...  +.+++..++++++.+++..++++.||++|+|+|+++|+||+|+++
T Consensus       163 ~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~  229 (314)
T PRK07566        163 NYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVF  229 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeE
Confidence            99999998888877764433  367888888888999999999999999999999999999999974

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=2.4e-36  Score=278.66  Aligned_cols=201  Identities=49%  Similarity=0.802  Sum_probs=172.4

Q ss_pred             HHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCcccccc
Q 022848           85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI  164 (291)
Q Consensus        85 ~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~i  164 (291)
                      |+|++++||++++.+++++++|.++++....+..++...++++++++.++++++|++|||+|+|+|++|+|+||+++|++
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i   80 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII   80 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence            46899999999999999999999877422111112333456567788899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHHHH
Q 022848          165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA  244 (291)
Q Consensus       165 s~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g~a  244 (291)
                      |+++++.+++++.+++++++++++.      +....+++++.+.+++||.||+++||++++|++.+|++++.+|+..+++
T Consensus        81 s~~~a~~~~~~~~~~~~~l~~~l~~------~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~  154 (283)
T TIGR01476        81 SLREVRWNWLVLTVAGLLVALVLGN------WLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA  154 (283)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988887753      3335667777888999999999999999889999999888888888777


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          245 LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       245 ~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +.+++++..++.+++++++..++++.||++|+|+|+++|+||+|+++
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~l  201 (283)
T TIGR01476       155 IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMI  201 (283)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEE
Confidence            77788888888889999999999999999999999999999999975

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=2.9e-34  Score=269.72  Aligned_cols=210  Identities=36%  Similarity=0.619  Sum_probs=170.6

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCc
Q 022848           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPI  159 (291)
Q Consensus        81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~a-g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi  159 (291)
                      ++++|+|++++||++++ .++|.++|..++ +...+........+.++++.+.+..+++|++|||+|+|+|++|+|.||+
T Consensus         9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl   87 (331)
T PRK12392          9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPI   87 (331)
T ss_pred             hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCCC
Confidence            46799999999998888 666766776665 3321111111112333445556777889999999999999999999999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (291)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~-~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp  238 (291)
                      ++|++|+++++.+++++.+++++++++++...+. ..+..+..++++.+++++||.||+++||++++|+..+|++++..+
T Consensus        88 ~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~  167 (331)
T PRK12392         88 PSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFIT  167 (331)
T ss_pred             CcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999888765431 123344455677889999999999999999889999999998888


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       239 ~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +..+.++.|++++..+++++..++|+.+++++||++|+|+|++.|+||+|+++
T Consensus       168 ~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~  220 (331)
T PRK12392        168 FLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMI  220 (331)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEE
Confidence            87777888999888888888999999999999999999999999999999975

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.8e-32  Score=254.35  Aligned_cols=202  Identities=21%  Similarity=0.211  Sum_probs=156.2

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhc--CC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCC
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP  158 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag--~~-~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RP  158 (291)
                      +.++.|++++||++.+...+++..++.++.  .. ..... .+...+..+++....+.+.+.+|||+|+|+|++|+|+||
T Consensus        11 ~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rP   89 (308)
T PRK12887         11 SWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLP   89 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCC
Confidence            568999999999999999999887776542  11 11101 122233333333344444444999999999999999999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (291)
Q Consensus       159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp  238 (291)
                      +++|++|+++++.+.+++.++++++++.++       |..+.+++++.+++++||.||+|+||+++++++.++...|..+
T Consensus        90 iasG~ls~~~a~~~~~~~~~lal~la~~~~-------~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~  162 (308)
T PRK12887         90 LAAGEFSRRQGQRIVIITGILALILAALLG-------PWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIV  162 (308)
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHH
Confidence            999999999999999888888888887654       4567778888899999999999999999988887665555544


Q ss_pred             HHHHHH-------hhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          239 WWAGQA-------LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       239 ~l~g~a-------~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .++.+.       ..+.+++..++++++.++++.++++.||++|+|+|++.|+||+|+++
T Consensus       163 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~l  222 (308)
T PRK12887        163 NLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRL  222 (308)
T ss_pred             HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHH
Confidence            333211       12356677788889999999999999999999999999999999874

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.6e-32  Score=252.53  Aligned_cols=200  Identities=17%  Similarity=0.142  Sum_probs=169.1

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC---
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE---  154 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~---  154 (291)
                      .++|.|++++||++++.++.|+.+|.+++    +.++|.      .++.++++.+++++++|++|||+|++.|..++   
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~------~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt   75 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL------LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT   75 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence            47899999999999999999999998765    345542      23444567788999999999999966544444   


Q ss_pred             --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHH
Q 022848          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (291)
Q Consensus       155 --p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~  232 (291)
                        ++||+++|++|+++++..+.++..+++.++..+...   .++..+.+++++.+.++.||.||+++|++++ ||+.+++
T Consensus        76 ~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~---~~~~~l~l~~~~~~~~~~Yt~~P~~lky~gl-Ge~~v~~  151 (296)
T PRK05951         76 GYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLD---RGIGAVTLALLGVFLWTCYMGPPFFLKYRWL-GEHLVFY  151 (296)
T ss_pred             CCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHcCCCcccCCCCc-hHHHHHH
Confidence              789999999999999999998888888777665443   2466778888899999999999999999986 9999999


Q ss_pred             HHhHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          233 SYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       233 ~~g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+|.+.+++. +.++|.+++..++.+++.++++.++.+.||++|+|+|+++|+||+|+++
T Consensus       152 ~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~l  211 (296)
T PRK05951        152 AWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIF  211 (296)
T ss_pred             HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeE
Confidence            9987666554 6788999998889999999999999999999999999999999999975

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=4.3e-32  Score=251.37  Aligned_cols=199  Identities=21%  Similarity=0.232  Sum_probs=169.3

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhch--hhhhc--CCC
Q 022848           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR--EIDAI--NEP  155 (291)
Q Consensus        83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a---g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~--~~D~~--n~p  155 (291)
                      ++|.|++++||+++..+++|+++|.+++   +.+++.     . ++..+++.+++++++|.+|||+|+  +.|+.  ++|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~-----~-~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~   75 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPL-----L-ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP   75 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHH-----H-HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC
Confidence            5789999999999999999999998876   334431     2 333345677899999999999999  46754  458


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (291)
Q Consensus       156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g  235 (291)
                      +||+++|++|+++++..+..+.++++++++++....   ++..+.+++++.+++++||.||.++|++++ ||+.+++.+|
T Consensus        76 ~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~Ys~~p~~~~~~gl-ge~~~~~~~G  151 (293)
T PRK06080         76 LRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS---GWWLLLLGLLCIAAAILYTGGPKPYGYTGL-GELFVGVFFG  151 (293)
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhhhhcCCCCccCCCCc-HHHHHHHHHH
Confidence            999999999999999999999998888888776543   456777788888899999999999999986 9999999888


Q ss_pred             HHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          236 SLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       236 ~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+.+.++ +.+.|++++..++++++.++++.++++.||++|+|+|+++|+||+|+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~l  208 (293)
T PRK06080        152 LVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRL  208 (293)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeE
Confidence            7766654 6778889998999999999999999999999999999999999999975

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=5.5e-32  Score=253.31  Aligned_cols=199  Identities=15%  Similarity=0.134  Sum_probs=169.7

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC----
Q 022848           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE----  154 (291)
Q Consensus        83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~----  154 (291)
                      ++|.|++++||++++.+++|+++|.+.+    +.++|.      .++..+++.+++|+++|++|||+|++.|..++    
T Consensus         2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~------~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~   75 (317)
T PRK13387          2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL------LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVG   75 (317)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccC
Confidence            4789999999999999999999998875    234431      23444456678999999999999998554443    


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHH
Q 022848          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (291)
Q Consensus       155 p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~  234 (291)
                      ++|++++|.+++++++..++.+++++++++.++....   +|..+.+++++.+.+++||.||+++||+++ ||+.+++.+
T Consensus        76 ~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~---g~~~l~igl~g~~~~~~Yt~gP~~l~y~gL-Ge~~v~i~~  151 (317)
T PRK13387         76 IGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT---SWLLLVIGLICFAIGILYTGGPLPLSRMPL-GEIFSGLTM  151 (317)
T ss_pred             CcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhhhhcCCCcccccCcc-HHHHHHHHH
Confidence            7899999999999999999999999999998887764   577888899999999999999999999995 999999999


Q ss_pred             hHHHHHHH-HHhhCCCCHHHHH--------------------HHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          235 ISLPWWAG-QALFGTLTPDIIV--------------------LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       235 g~lp~l~g-~a~~g~~~~~~~l--------------------l~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      |...+.+. +.+++.+++..+.                    .++++++.+.++++.||++|+|+|+++|+||+|+++
T Consensus       152 G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~l  229 (317)
T PRK13387        152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYI  229 (317)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeE
Confidence            88776655 6777877765544                    789999999999999999999999999999999985

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=3.5e-32  Score=250.56  Aligned_cols=193  Identities=31%  Similarity=0.390  Sum_probs=161.1

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCcccc
Q 022848           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG  162 (291)
Q Consensus        83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG  162 (291)
                      ++|+|++++||+++...+++.++|+.++....+..   .. ++..+++.++.++++|++|||+|+|+|++|+|+||+++|
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~---~~-~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG   77 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDL---KG-IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG   77 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcch---HH-HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence            58999999999999999999999988763322211   11 333445678899999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHH
Q 022848          163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG  242 (291)
Q Consensus       163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g  242 (291)
                      ++|+++++.++.++.++++.++++++       +..+.+++++.++.++||.   ++||++++||+++|+.+|..++.++
T Consensus        78 ~is~~~a~~~~~~l~~~~~~l~~~l~-------~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~  147 (279)
T PRK09573         78 RISLKEAKIFSITLFIVGLILSIFIN-------IYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGG  147 (279)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988887654       4567777778888999994   6999999999999999988877666


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       243 ~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+..+  ....+++.+..++|+.++++.||++|+|+|+++|++|+|+++
T Consensus       148 ~~~~~--~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~  194 (279)
T PRK09573        148 LAVFN--VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKY  194 (279)
T ss_pred             HHHcc--chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHh
Confidence            55554  344566777888999999999999999999999999999863

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=1.6e-31  Score=245.78  Aligned_cols=195  Identities=34%  Similarity=0.399  Sum_probs=159.7

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccc
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS  161 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~s  161 (291)
                      +++|+|++++||+++..++++..+|+.++...... .   ..++..+++++++++++|++|||+|+|+|++|+|+||+++
T Consensus         2 m~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~-~---~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          2 MTVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS-P---SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CCHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch-H---HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            35899999999999999999999999887432211 1   1133445677889999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHH
Q 022848          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (291)
Q Consensus       162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~  241 (291)
                      |++|+++++.++.++.++++++++.++       +..+.+++++.+..++||.   ++||++++||+.+|...|..+.++
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~-------~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g  147 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLP-------PLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFG  147 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHH
Confidence            999999999999999999988887664       4566677777778899984   899999889999988777665555


Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          242 GQALFGT-LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       242 g~a~~g~-~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +.+ .++ .....+++++..++++.+++++||++|+|+|+++|++|+|+++
T Consensus       148 ~~~-~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~  197 (276)
T PRK12882        148 GAA-VGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILI  197 (276)
T ss_pred             HHH-hcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHh
Confidence            433 443 3334566778888999999999999999999999999999864

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.98  E-value=4.6e-31  Score=245.45  Aligned_cols=201  Identities=20%  Similarity=0.246  Sum_probs=171.6

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhc
Q 022848           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI  152 (291)
Q Consensus        79 ~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~  152 (291)
                      +..++++.|++.+||+++..++.|+++|.+++    +.++|.     . ++..+++..++|+++|.+|||+|++  .|+.
T Consensus         7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~-----~-~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~   80 (304)
T PRK07419          7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD-----Q-FITFLLAAILILAWENLSNDVFDADTGIDKN   80 (304)
T ss_pred             CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            55678999999999999999999999998865    345542     2 2334457788999999999999998  7874


Q ss_pred             CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHH
Q 022848          153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (291)
Q Consensus       153 n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~  232 (291)
                       +++ ...++..+++++...++.+++++++++.++....   +|..+.+++++.+.+|+||.||+++||+++ ||+++++
T Consensus        81 -~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~---g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v~l  154 (304)
T PRK07419         81 -KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQS---DWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLCFL  154 (304)
T ss_pred             -ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHHHH
Confidence             222 2445556799999999999999999998887654   577888899999999999999999999996 9999999


Q ss_pred             HHhHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          233 SYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       233 ~~g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+|.+++.+. ++++|++++..++.++++++.+.++++.||++|+|+|+++|+||+|+++
T Consensus       155 ~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~l  214 (304)
T PRK07419        155 AFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRL  214 (304)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeee
Confidence            9998887765 7889999999999999999999999999999999999999999999985

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=3.9e-31  Score=243.25  Aligned_cols=194  Identities=31%  Similarity=0.444  Sum_probs=160.1

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCc
Q 022848           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPI  159 (291)
Q Consensus        81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi  159 (291)
                      |+++++|++++||+++...++++++|++++.. +++  .   . ++..++++++.++++|++|||+|+|+|++|+|+||+
T Consensus         1 ~~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~--~---~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl   74 (279)
T PRK12884          1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPL--D---E-ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPI   74 (279)
T ss_pred             ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCch--H---H-HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCC
Confidence            46899999999999999999999999987743 322  1   1 233446778899999999999999999999999999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHH
Q 022848          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW  239 (291)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~  239 (291)
                      ++|++|+++++.+++++.++++.++..++       +..+.+++++.+.+++||.   ++||++++|++++|+.++..+.
T Consensus        75 ~~G~is~~~a~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~  144 (279)
T PRK12884         75 PSGRISRREALLLAILLFILGLIAAYLIS-------PLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFI  144 (279)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHH
Confidence            99999999999999998888888887664       4566667777788999994   7999998899999988765444


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       240 l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .++.+. +......+++++..++|+.++++.+|++|+|+|+++|+||+|+++
T Consensus       145 ~g~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~  195 (279)
T PRK12884        145 FGGIAV-GELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILY  195 (279)
T ss_pred             HHHHHh-CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHh
Confidence            444444 444446777888889999999999999999999999999999864

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.98  E-value=7.1e-31  Score=241.41  Aligned_cols=199  Identities=21%  Similarity=0.231  Sum_probs=156.5

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCcc
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP  160 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~  160 (291)
                      ..++.+++++||.+|+....++++|+..+|. ++|.+.   ...+++++ ....+.+.|.+|||+|+|+|++|+|+||++
T Consensus        10 ~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~---~~~l~~~~-~~p~n~~~~giND~fD~eiDa~Npr~~~i~   85 (292)
T PRK13595         10 LPLRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPG---VLPLLLYL-TLPFNLLIYGLNDLADRETDAASPRKGGWQ   85 (292)
T ss_pred             hHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhH---HHHHHHHH-HHHHHHHHHHHHhhhhhhhhccCCCCCCCC
Confidence            5678899999999999999999999987764 565211   12222222 344677999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHH
Q 022848          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (291)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l  240 (291)
                      +|++|+++++.+...+.+.++.++.++....   +|..+.+.+++.+++++||+||+|+|++++++++.. ..++ +|+.
T Consensus        86 ~G~is~~~~~~~~~~~~~~~~~~~l~la~~l---~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g-~p~~  160 (292)
T PRK13595         86 GARLSPGEVRPLLRAVLLLNAPFLLYLALLL---PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYA-LPLA  160 (292)
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHH-HHHH
Confidence            9999999999877777666655555444432   466777777888999999999999999999988876 3343 5877


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       241 ~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+.++.|+......  .+..++|..++++.++++|+|+||+.|+||+|+++
T Consensus       161 ~~~~~~g~~~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~l  209 (292)
T PRK13595        161 LPALALGAPVPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTL  209 (292)
T ss_pred             HHHHHcCCcchHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHh
Confidence            77777776543322  34556788999999999999999999999999864

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.97  E-value=7.4e-31  Score=241.41  Aligned_cols=192  Identities=27%  Similarity=0.410  Sum_probs=156.0

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccc
Q 022848           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS  161 (291)
Q Consensus        83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a-g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~s  161 (291)
                      ++|+|++++||+++....++.++|+.++ +..+. .    ..++..+++.++.++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~-~----~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP-I----KTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc-H----HHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            5789999999999999999999998876 33321 1    1122333456678899999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHH
Q 022848          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (291)
Q Consensus       162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~  241 (291)
                      |++++++++.++.++.++++.+++.++       +..+.+++++.+.+++|+.   ++|+++++||+++|...|..|+.+
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~-------~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g  146 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLIN-------IEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYG  146 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHH
Confidence            999999999999888888887776654       4456666777788999995   799988889999999998888755


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       242 g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +.+ .++++...++. ...+++..++++.||++|+|+|+++|++|+|+++
T Consensus       147 ~~a-~~~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~  194 (277)
T PRK12883        147 AIA-VGRIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIII  194 (277)
T ss_pred             HHH-hccccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHh
Confidence            544 47777665443 3467788899999999999999999999999864

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.97  E-value=9e-31  Score=241.48  Aligned_cols=192  Identities=25%  Similarity=0.237  Sum_probs=158.8

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCC
Q 022848           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (291)
Q Consensus        83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a--g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RP  158 (291)
                      ++|+|++++||++....+..++.|+.++  +.+++.     . ++..+++++++++++|++|||+|+|+|++|+  |+||
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~-----~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RP   74 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLK-----T-LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRP   74 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCC
Confidence            4789999999999999988888898876  333431     1 3334457788999999999999999999994  8999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (291)
Q Consensus       159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp  238 (291)
                      +++|++|+++++.+++++.++++.++..++       +....++.++.++.+.|+    .+||++++++++.|+.++..+
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~~~~~l~-------~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~  143 (282)
T TIGR01475        75 LVSGLISKKEARTMIILSLALFLSASYFLN-------PLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGLAP  143 (282)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHHHH
Confidence            999999999999988877766666666553       445556666667788998    389999999999999887666


Q ss_pred             HHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          239 WWAGQALFGTLT--PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       239 ~l~g~a~~g~~~--~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +.++.++.|+++  ...++++++.++|+.+++++|+++|+|+|+++|++|+|+++
T Consensus       144 ~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~  198 (282)
T TIGR01475       144 LAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARF  198 (282)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHh
Confidence            666678888888  77788899999999999999999999999999999999864

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.6e-30  Score=240.81  Aligned_cols=196  Identities=20%  Similarity=0.163  Sum_probs=161.3

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC-
Q 022848           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG-----NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-  154 (291)
Q Consensus        81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag-----~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~-  154 (291)
                      +.++|+|++++||++....+..+++|+.++.     ...++.    ..++..+++++++.+++|++|||+|+|+|++|+ 
T Consensus         5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~----~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R   80 (291)
T PRK12874          5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF----KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPR   80 (291)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH----HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence            3579999999999999999998888887653     111211    123344466778999999999999999999998 


Q ss_pred             -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHH
Q 022848          155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS  233 (291)
Q Consensus       155 -p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~  233 (291)
                       ++||+++|++|+++++.+++++.++++.+++.+       |+..+.+++...+....|+.    +||++.+++++.|+.
T Consensus        81 T~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~-------n~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~g~~  149 (291)
T PRK12874         81 TANRPSVDGRISVKSMVLFIVLNALIFIGVSYFI-------NPLAFKLSFPFLIVLGGYSY----FKRFSSLAHLVLGLS  149 (291)
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHhh----hcccccccHHHHHHH
Confidence             799999999999999998888887776666554       34455566666667889993    999999999999988


Q ss_pred             HhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       234 ~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ++..|+.++.+++|+++...+++++..++|+.++++.++++|+|+|+++|++|+|+++
T Consensus       150 ~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~  207 (291)
T PRK12874        150 LGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKF  207 (291)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHh
Confidence            8766666667788899988888889999999999999999999999999999999864

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.97  E-value=1.6e-30  Score=239.98  Aligned_cols=193  Identities=18%  Similarity=0.181  Sum_probs=162.9

Q ss_pred             CccchHHHHHHHHHHHHhh---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcCC--CCCCcccccc
Q 022848           92 KPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAINE--PYRPIPSGAI  164 (291)
Q Consensus        92 RP~~~~~~~~~~~~G~~~a---g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~n~--p~RPi~sG~i  164 (291)
                      ||++++.++.|+++|.+++   +.++|.     . ++..+++..++|.++|.+|||+|++  .|+.++  |.|++++|.+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~-----~-~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~i   74 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLHAFVWL-----V-ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLI   74 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcCCccHH-----H-HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCC
Confidence            8999999999999998875   344442     2 2333456788999999999999996  465443  7899999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhCCc---hhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHH
Q 022848          165 SENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (291)
Q Consensus       165 s~~~a~~~~~~l~~l~l~l~~~l~~~~g~~---~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~  241 (291)
                      ++++++..++.+++++++++.++.+..++.   -+..+.+++++.+.+|+||.||+++||+++ ||+++++.+|.+++++
T Consensus        75 s~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gL-GE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        75 TPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGL-GDISVLVFFGPLAVLG  153 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCch-HHHHHHHHHHHHHHHH
Confidence            999999999999999999998887655310   014567788888999999999999999997 9999999999887776


Q ss_pred             H-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          242 G-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       242 g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      . +.++|++++..++.+++.++++.++++.||++|+|+|+++|+||+|+++
T Consensus       154 ~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~l  204 (284)
T TIGR00751       154 TQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRL  204 (284)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhc
Confidence            5 6789999999888899999999999999999999999999999999985

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.4e-30  Score=240.24  Aligned_cols=194  Identities=16%  Similarity=0.034  Sum_probs=158.2

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCcc
Q 022848           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIP  160 (291)
Q Consensus        83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~  160 (291)
                      ++|+|++++||++....+..+++|+.++.+..++...    ++..+++++++.+++|++||++|+|+|++|+  ++||++
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~~----l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLp   77 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPIK----ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALV   77 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCC
Confidence            5899999999999999999999999876332222111    2233446778999999999999999999996  799999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHH
Q 022848          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (291)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l  240 (291)
                      +|++|++|++.+..++.++++.+.+.+       ||..+.++.+...+...|+    .+||+++++++.+|+.++.-|+.
T Consensus        78 sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~~~l~  146 (286)
T PRK12895         78 SGRIKMREAIAFTIIFIAIFEICTFLL-------NRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGLGVLA  146 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHhHHHH
Confidence            999999999999999888887776665       4556666666555555665    59999999999999999865555


Q ss_pred             HHHHhhCCCCH--HHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          241 AGQALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       241 ~g~a~~g~~~~--~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ++.++.|++++  ..+++.+..++|+.+.+++++++|+|+|++.|+||+|+++
T Consensus       147 g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~f  199 (286)
T PRK12895        147 GYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTY  199 (286)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHH
Confidence            66777888764  3456788999999999999999999999999999999864

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=3.4e-30  Score=238.72  Aligned_cols=195  Identities=25%  Similarity=0.170  Sum_probs=158.3

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCc
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPI  159 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi  159 (291)
                      .++|+|+|++||++....+++.+.|+.++....++.    ..++..+++.+++++++|++|||+|+|+|++|+  ++||+
T Consensus         6 ~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~----~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL   81 (291)
T PRK12886          6 TKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGA----SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAI   81 (291)
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCC
Confidence            579999999999999999998999998763222211    123344567788999999999999999999998  78999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHH
Q 022848          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW  239 (291)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~  239 (291)
                      ++|++|+++++.+...+.++++.+...+       ||..+.+++++.+..+.|+.    +||++.+++++.|++++..|+
T Consensus        82 ~sG~is~~~A~~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~Y~~----~Kr~t~~~~~~~g~~~~~~~l  150 (291)
T PRK12886         82 PAGLISKGSAILFIVLSSLLMLFAAWFL-------NPLCLYLSPPALFFLLLYSY----CKRFTALAHVVLGFCLALAPL  150 (291)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh----hhccccccHHHHHHHHHHHHH
Confidence            9999999999887555444444333333       45566677667777889993    899999999999988776665


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       240 l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .++++++|++++..++++++.++|+.++++.++++|+|+|+++|++|+|+++
T Consensus       151 ~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~  202 (291)
T PRK12886        151 GAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKL  202 (291)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhc
Confidence            5567888999998899999999999999999999999999999999999864

>PLN02922 prenyltransferase

Probab=99.97  E-value=3.1e-30  Score=241.04  Aligned_cols=202  Identities=22%  Similarity=0.286  Sum_probs=162.0

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhc
Q 022848           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI  152 (291)
Q Consensus        79 ~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~  152 (291)
                      ++.+++|.|++++||++++.+++|+++|.+++    +.++|.     . ++..+++.+++|.++|.+|||+|++  .|+.
T Consensus        10 ~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~-----~-~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~   83 (315)
T PLN02922         10 EELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR-----R-YGTLLLSSVLVITWLNLSNDAYDADTGVDKN   83 (315)
T ss_pred             CCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH-----H-HHHHHHHHHHHHHHHHHHhhhhHhccCcCcc
Confidence            45688999999999999999999999998765    445552     2 2334456788999999999999987  6875


Q ss_pred             CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHH
Q 022848          153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (291)
Q Consensus       153 n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~  232 (291)
                      ++..+.-..|  ++++++..++.+++++++ +.++..+. ..+|.++.+++++++.+|+||.||+++||+++ ||+++++
T Consensus        84 ~~~~~~~~~~--s~~~v~~~~~~~~~la~~-g~~ll~~~-~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~i  158 (315)
T PLN02922         84 KKESVVNLVG--SRRGVLAAAIGCLALGAA-GLVWASLV-AGNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCFA  158 (315)
T ss_pred             cCCCCCCccc--CHHHHHHHHHHHHHHHHH-HHHHHHHH-ccChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHHH
Confidence            5422222234  999999988888888874 44333221 02467888899999999999999999999997 9999999


Q ss_pred             HHhHHHHHHH-HHhhC----------CCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          233 SYISLPWWAG-QALFG----------TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       233 ~~g~lp~l~g-~a~~g----------~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+|.+++.+. +.++|          .+++..++.++++++++.+++++||++|+|+|+++|+||+||++
T Consensus       159 ~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~l  228 (315)
T PLN02922        159 AFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRL  228 (315)
T ss_pred             HHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEE
Confidence            9988877655 45666          35677888999999999999999999999999999999999985

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=2.3e-30  Score=240.46  Aligned_cols=200  Identities=23%  Similarity=0.274  Sum_probs=162.4

Q ss_pred             cccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848           78 AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (291)
Q Consensus        78 ~~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p  155 (291)
                      +..+.++|+|++++||+++...++++++|++++....++..    .++..+++++++++++|++|||+|+|+|++|+  |
T Consensus         4 ~~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~----~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~   79 (296)
T PRK04375          4 SSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLL----LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTK   79 (296)
T ss_pred             cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccC
Confidence            35567899999999999999999999999988743222211    23344567788999999999999999999988  7


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH-hhhcccCCCcCcccccchhhHHHHHHH
Q 022848          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASY  234 (291)
Q Consensus       156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~-~~~~YS~pPlrlKr~~~~g~l~~g~~~  234 (291)
                      +||+++|++|+++++.++.++.++++++++.+.      |+....+.+++.+ ..++||.   ++||+++ +|..++...
T Consensus        80 ~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~------~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~~  149 (296)
T PRK04375         80 NRPLVTGRISPREALIFGLVLGVLGFLLLGLFV------NPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGAA  149 (296)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHHH
Confidence            999999999999999999999988888875542      2334444444433 4668984   7999996 688887777


Q ss_pred             hHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          235 ISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       235 g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +.+|++.| ++++|++++..+++++..++|+.+.+..+.++|.|+|+++|+||+|+++
T Consensus       150 g~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~  207 (296)
T PRK04375        150 GAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVK  207 (296)
T ss_pred             HHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceee
Confidence            76776665 5678999988888999999999999999999999999999999999864

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.97  E-value=3.6e-30  Score=237.87  Aligned_cols=195  Identities=21%  Similarity=0.281  Sum_probs=160.9

Q ss_pred             hhHHHHHhhhCccc---hHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848           82 NKWKIRLQLTKPVT---WPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (291)
Q Consensus        82 ~~l~~~l~l~RP~~---~~~~~~~~~~G~~~ag~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p  155 (291)
                      +++++|++++||+.   ...+++|++.|+.++.. ..+.   . ..++..+++++++++++|++|||+|+|.|++|+  +
T Consensus         5 ~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~---~-~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   80 (285)
T PRK12847          5 MKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPD---I-SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTK   80 (285)
T ss_pred             HHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCc---H-HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCccc
Confidence            57999999888875   44677889999887632 1121   1 123344556788999999999999999999876  6


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (291)
Q Consensus       156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g  235 (291)
                      +||+++|++|+++++.++.++.++++.+.+.+       |+..+.+++++.+..++||.    .||+..+++++.|+.++
T Consensus        81 ~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~  149 (285)
T PRK12847         81 NRPLASGALSVKQALILLFILLLIALVILLLL-------NKTTIYLSFIAVILIVLYPL----MKRFFYWPQLFLGFTFN  149 (285)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhccc----cccCCcccHHHHHHHHH
Confidence            89999999999999999988888888777655       35577788888888899983    89988889999998887


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ..++.++.+++|++++..++++++.++|+.+++++++++|+|+|+++|++|+|+++
T Consensus       150 ~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~  205 (285)
T PRK12847        150 MGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYF  205 (285)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHh
Confidence            65555667888999999999999999999999999999999999999999999864

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=4e-30  Score=238.82  Aligned_cols=196  Identities=20%  Similarity=0.140  Sum_probs=155.9

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCC
Q 022848           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (291)
Q Consensus        81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RP  158 (291)
                      +.++++|++++||++....+++.++|+.++....++..    .++.++++.+++++++|++|||+|+|+|++|+  ++||
T Consensus        12 ~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~----~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RP   87 (300)
T PRK13106         12 RSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPIS----TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRP   87 (300)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCC
Confidence            45899999999999999999989999987733222211    23344567788999999999999999999996  7999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (291)
Q Consensus       159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp  238 (291)
                      +++|++|++|++.+..++.++++.++..+       |+..+.+..++.++.+.|+    .+||+++++|+.+|++++..+
T Consensus        88 l~sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~~~  156 (300)
T PRK13106         88 LVTGAIKISEAKALITAGLILFFASAYLV-------NRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQGLAV  156 (300)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHHHHH
Confidence            99999999999988766666665555544       3455666666666677898    389999999999999998877


Q ss_pred             HHHHHHhhCCCC--------HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          239 WWAGQALFGTLT--------PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       239 ~l~g~a~~g~~~--------~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +.++.++.|...        ...+++.+..++|+.+++++|+++|+|+|++.|+||+|+++
T Consensus       157 ~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~  217 (300)
T PRK13106        157 FSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVL  217 (300)
T ss_pred             HHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHH
Confidence            777677777542        23455666788999999999999999999999999999864

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=5.4e-30  Score=236.54  Aligned_cols=192  Identities=23%  Similarity=0.191  Sum_probs=157.4

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh-----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (291)
Q Consensus        83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a-----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p  155 (291)
                      ++|+|+++.||++......-++.|+..+     +.+++  .    .++..+++.+++++++|++|||+|+|+|++|+  +
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~----~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~   74 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHW--A----DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTA   74 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--H----HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCC
Confidence            4789999999999988666655565433     33333  1    13334557788999999999999999999998  7


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (291)
Q Consensus       156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g  235 (291)
                      +||+++|++|+++++.+++.+..+++.++..+       ||..+.++.++.+..+.|+    ..||+.+++++..|++++
T Consensus        75 ~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~  143 (284)
T PRK12888         75 GRELVTGAVSVRTAWTGALVALAVFLGAAALL-------NPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQA  143 (284)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHH
Confidence            99999999999999998887776666666554       3555666666666778897    489999999999999887


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ..|+.++++++|++++..++++++.++|+.+++++|+++|+|+|+++|+||+|+++
T Consensus       144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~  199 (284)
T PRK12888        144 VGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARF  199 (284)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhh
Confidence            76776777888999998999999999999999999999999999999999999874

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.97  E-value=1.2e-29  Score=233.88  Aligned_cols=194  Identities=23%  Similarity=0.304  Sum_probs=158.9

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCcc
Q 022848           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIP  160 (291)
Q Consensus        83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~  160 (291)
                      ++|+|+|++||++.....++++.|+.+++....+..    .++..++++++.++++|++|||+|+|+|++|+  |+||++
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~----~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~   76 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWL----PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTP   76 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcC
Confidence            578999999999999999999999988742222111    13344567788999999999999999999988  799999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHH-HHhhhCCchhHHH-HHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848          161 SGAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTIF-WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (291)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~-l~~~~g~~~p~~~-~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp  238 (291)
                      +|++|+++++.+++++.++++.++++ ++       |... .+.+...+..+.||.   ++||++++ |..++...|.+|
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~  145 (279)
T PRK12869         77 VGLVNRKEALAVGSALSALGTALGFLLLG-------PLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGNAA  145 (279)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHHHH
Confidence            99999999999999998888888876 43       4332 334444567789994   79999984 777777777777


Q ss_pred             HHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          239 WWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       239 ~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ++++ ++++|++++..++++++.++|+.++...++++|.|+|+++|+||+|+++
T Consensus       146 ~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~  199 (279)
T PRK12869        146 ALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVV  199 (279)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceee
Confidence            7766 5678999998999999999999999999999999999999999999874

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.97  E-value=5.7e-30  Score=237.12  Aligned_cols=196  Identities=22%  Similarity=0.262  Sum_probs=160.5

Q ss_pred             chhHHHHHhhhCccc---hHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848           81 TNKWKIRLQLTKPVT---WPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (291)
Q Consensus        81 ~~~l~~~l~l~RP~~---~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p  155 (291)
                      +.++++|++++||+.   ....++|+++|+.++....++.    ..++..+++.+++++++|++|||+|+|+|++|+  +
T Consensus         6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~----~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~   81 (290)
T PRK12870          6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPL----PLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTR   81 (290)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCccc
Confidence            468999999987766   4456678999988763222221    123344456778999999999999999998766  4


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (291)
Q Consensus       156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g  235 (291)
                      +||+++|++|++|++.++.++.++++.+++.++       +..+.+++++.+..++|+.    .||+..+++++.|+.++
T Consensus        82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~-------~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~  150 (290)
T PRK12870         82 FRPLASRRLSVKVGIVIAIVALLCAAGLAFFLN-------PLSFWLCVAAVPVIFLYPL----AKRVFPVPQLVLAIAWG  150 (290)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHhhh----hhhccccceeeehHHHH
Confidence            899999999999999999999988888877663       5566777777778889983    89988889999998887


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ..+..++.+++|++++..+++++..++|+.+++++++++|+|+|+++|++|+|+++
T Consensus       151 ~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~  206 (290)
T PRK12870        151 FAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFF  206 (290)
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHh
Confidence            65555557789999988888999999999999999999999999999999999864

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.97  E-value=1.2e-29  Score=237.22  Aligned_cols=197  Identities=22%  Similarity=0.277  Sum_probs=165.1

Q ss_pred             cchhHHHHHhhh---CccchHHHHHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhh
Q 022848           80 ETNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNF-----HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDA  151 (291)
Q Consensus        80 ~~~~l~~~l~l~---RP~~~~~~~~~~~~G~~~ag~~-----~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~  151 (291)
                      .+.++++|+|++   ||+.....++|+++|++++...     .+   ++.. ++..+++++++++++|++|||+|+|+|+
T Consensus        26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~---~~~~-~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~  101 (314)
T PRK12878         26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLL---LLWH-LFLFFVGAIAMRGAGCTYNDIVDRDIDA  101 (314)
T ss_pred             cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCC---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            447999999999   9999999999999999876321     22   1122 3344567889999999999999999999


Q ss_pred             cCC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHH
Q 022848          152 INE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFA  229 (291)
Q Consensus       152 ~n~--p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~  229 (291)
                      +++  ++||+++|++|+++++.++.++.++++.+.+.+       ||..+.+++++.+..+.|+    .+||+..++++.
T Consensus       102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~  170 (314)
T PRK12878        102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-------NWFAIALGIASLAIVAAYP----FMKRITWWPQFF  170 (314)
T ss_pred             CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhcCCcchHH
Confidence            877  689999999999999998888888887777654       3556778888888899997    399988888888


Q ss_pred             HHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          230 LGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       230 ~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .|+.++..|+.++++++|++++..+++.+..++|+.+.+.+++++|+|+|+++|++|+|+++
T Consensus       171 ~Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~  232 (314)
T PRK12878        171 LGLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLF  232 (314)
T ss_pred             HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHh
Confidence            88877665666667889999988888888999999999999999999999999999999874

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.97  E-value=1.4e-29  Score=233.63  Aligned_cols=196  Identities=23%  Similarity=0.296  Sum_probs=159.6

Q ss_pred             chhHHHHHhhhC---ccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848           81 TNKWKIRLQLTK---PVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (291)
Q Consensus        81 ~~~l~~~l~l~R---P~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p  155 (291)
                      ++++++|++++|   |......++|+++|+.++....++.    ..++..+++.+++++++|++|||+|+|+|++|+  +
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~----~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   77 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDL----WVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK   77 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence            357999999997   5556677788888988763222211    113334456678999999999999999999876  5


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (291)
Q Consensus       156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g  235 (291)
                      +||+++|++|+++++.++.++.++++++++.+       |+..+.+++++.+..++|+    ..||+..++++..|+.++
T Consensus        78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~g  146 (282)
T PRK12848         78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTL-------NTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAAFG  146 (282)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHHHH
Confidence            89999999999999999999998888776655       3556677777777888995    388888889999888887


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ..+..++.++.|+++...+++++..++|+...++.++++|+|+|+++|++|+|+++
T Consensus       147 ~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~  202 (282)
T PRK12848        147 WGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILF  202 (282)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHh
Confidence            65555667788999988899999999999999999999999999999999999863

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.97  E-value=3.9e-29  Score=229.13  Aligned_cols=203  Identities=21%  Similarity=0.253  Sum_probs=170.7

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhh---c-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhc
Q 022848           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS---G-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI  152 (291)
Q Consensus        79 ~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~a---g-~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~  152 (291)
                      ..+.+.+.|++++||++++.++.|+++|.+.+   + .++|     .. .+.++++..+++..+|..|||+|++  .|.+
T Consensus         3 ~~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~-----~~-~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~   76 (303)
T COG1575           3 QKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LV-ALLALIAAILLQILVNLANDYFDYKKGTDTH   76 (303)
T ss_pred             cccHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH-----HH-HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC
Confidence            34567799999999999999999999998865   2 3443     22 3444566788999999999999997  6753


Q ss_pred             ----CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhH
Q 022848          153 ----NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNF  228 (291)
Q Consensus       153 ----n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l  228 (291)
                          .+.++-+....++++..+...+.++..+++++..+....   +|.++.+++++.+++|+||.+|++++|.|+ ||+
T Consensus        77 g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s---~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi  152 (303)
T COG1575          77 GPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS---DWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEI  152 (303)
T ss_pred             CCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHheeeeccCCcCcccCCH-HHH
Confidence                124556667788888888888888887877777665553   577888999999999999999999999997 999


Q ss_pred             HHHHHHhHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          229 ALGASYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       229 ~~g~~~g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+++++|.+.+++. |.+++++++..++.++++++.+..++..||+||+|+|+++|++|+||++
T Consensus       153 ~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrL  216 (303)
T COG1575         153 FVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRL  216 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeee
Confidence            99999998877665 7889999999999999999999999999999999999999999999985

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.97  E-value=3.9e-29  Score=230.82  Aligned_cols=193  Identities=23%  Similarity=0.259  Sum_probs=162.1

Q ss_pred             HHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcCCCCCCcc
Q 022848           87 RLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAINEPYRPIP  160 (291)
Q Consensus        87 ~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~n~p~RPi~  160 (291)
                      |++.+||++++.+++|+++|.+++    +.++|.     ..++ .+++..++|.++|.+|||+|++  .|+.+..  ...
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~-----~~ll-~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~--~~~   73 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD-----RFAL-FLIAAILILAWINLTNDVFDSDTGIDRFKLH--SIV   73 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH-----HHHH-HHHHHHHHHHHHHHHHhHHHHhcCCCccccC--Ccc
Confidence            789999999999999999998875    345542     2223 3456788999999999999998  4875331  122


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHH
Q 022848          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (291)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l  240 (291)
                      ++..+++++...+.++++++++++.++....   +|..+.+++++++.+|+||.||+++||+++ ||+++++.+|.++++
T Consensus        74 ~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~---~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~  149 (285)
T TIGR02235        74 NLTGSRSLVFWLANFFLLIGLVGIAALSWRW---QITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIA  149 (285)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHH
Confidence            3334678998888889889998888887664   467788889999999999999999999997 999999999988877


Q ss_pred             HH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          241 AG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       241 ~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +. +.++|++++..++.++++++.+.++++.||++|+|+|+++|+||++|++
T Consensus       150 g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~l  201 (285)
T TIGR02235       150 AALYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRL  201 (285)
T ss_pred             HHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceehee
Confidence            65 7889999999999999999999999999999999999999999999985

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.97  E-value=5.1e-29  Score=229.85  Aligned_cols=192  Identities=23%  Similarity=0.288  Sum_probs=156.8

Q ss_pred             HHHhhhCccchHHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCcccc
Q 022848           86 IRLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSG  162 (291)
Q Consensus        86 ~~l~l~RP~~~~~~~~~~~~G~~~ag~~-~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~sG  162 (291)
                      +..++.||..+...++|.+.|+.++... ...  +. ..++.++++..+.++++|++|||+|+|+|++|+  ++||+++|
T Consensus         6 ~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~--~~-~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG   82 (281)
T TIGR01474         6 KLMRADKPIGTLLLLWPCLWSLLLAAQAGGIP--PL-YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASG   82 (281)
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHHhcccCCC--cH-HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCC
Confidence            4455567888889999999998876321 110  11 123344456678999999999999999999776  68999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHH
Q 022848          163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG  242 (291)
Q Consensus       163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g  242 (291)
                      ++|+++++.++.++.++++.+++.+       ||..+.+++++.++.+.|+    .+||+++++++..|+.++..|+.++
T Consensus        83 ~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~~~g~  151 (281)
T TIGR01474        83 AVSVRQAILFLLVQLLVALGVLLQL-------NPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGALMGW  151 (281)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHHHHHH
Confidence            9999999999988888888877654       3567778888888899998    3999999999999988876666666


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       243 ~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ++++|++++..+++.+..++|+.+++.+++++|+|+|+++|+||+|+++
T Consensus       152 ~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~  200 (281)
T TIGR01474       152 AAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRF  200 (281)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHh
Confidence            7888999988887888999999999999999999999999999999864

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=1.2e-28  Score=229.70  Aligned_cols=197  Identities=21%  Similarity=0.205  Sum_probs=157.1

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCC
Q 022848           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (291)
Q Consensus        81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RP  158 (291)
                      +.++|+|++++||+++...++++++|+.++...+++.   . .++..+++..+.++++|++|||+|+|+|++|+  ++||
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~---~-~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RP   85 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDP---V-LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRV   85 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCH---H-HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCC
Confidence            4678999999999999999999999998863222221   1 13334456778999999999999999999876  6899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH-HhhhcccCCCcCcccccchhhHHHHHHHhHH
Q 022848          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGS-LLSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (291)
Q Consensus       159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~-~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~l  237 (291)
                      +++|++|+++++.+++++.++++.++..+.      |+....+..++. +..++||.   ++||++++++++.|+.. .+
T Consensus        86 lpsG~is~~~A~~~~~~l~~~g~~ll~~~~------n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~~g-a~  155 (306)
T PRK13362         86 TVTGEISLGEALGFGLALGVAGFGLLAAFT------NPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSLSG-AM  155 (306)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHHHH-HH
Confidence            999999999999999988888887664431      344444444443 34678983   69999998888766555 45


Q ss_pred             HHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          238 PWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       238 p~l~-g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      |++. +.+++|++++..+++++.+++|+.++....+++|.|+|+++|++|+|++.
T Consensus       156 p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~  210 (306)
T PRK13362        156 PPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVAR  210 (306)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceec
Confidence            5554 46788899999999999999999999999999999999999999999863

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.96  E-value=7.7e-29  Score=229.36  Aligned_cols=194  Identities=29%  Similarity=0.370  Sum_probs=166.1

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCC--CCC
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEP--YRP  158 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag-~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p--~RP  158 (291)
                      ..++.++++.||.++.+..++.++|...+. +++.     +..++.+++++++..+++|++||++|+|+|++|+|  +||
T Consensus        11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP   85 (289)
T COG0382          11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP   85 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence            456777888888889999999999988764 3221     23345555677889999999999999999999998  999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (291)
Q Consensus       159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp  238 (291)
                      +++|++|+++++.+..++.++++++++.++       +..+.+.+++.++.+.|.    ++||.++++++.+|..++..+
T Consensus        86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l~-------~~~~~l~~~~~~l~~~Y~----~~Kr~~~~~~~~lg~~~~~~~  154 (289)
T COG0382          86 LPSGRVSVKEALLLAILLLLLGLALALLLN-------PLAFLLSLAALVLALAYP----FLKRFTFLPQLVLGLAFGLGA  154 (289)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHH----HhhcCCchHHHHHHHHHHHHH
Confidence            999999999999999999999999998875       445777778888999993    799999999999999998777


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       239 ~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ..++.++.|+.....+++.+..++|+.++++.++++|+|+|++.|++|+|+.+
T Consensus       155 ~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~  207 (289)
T COG0382         155 LAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLF  207 (289)
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHh
Confidence            77777778888888899999999999999999999999999999999998753

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.96  E-value=1.9e-28  Score=226.72  Aligned_cols=195  Identities=24%  Similarity=0.258  Sum_probs=157.8

Q ss_pred             hhHHHHHhhhC---ccchHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--
Q 022848           82 NKWKIRLQLTK---PVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (291)
Q Consensus        82 ~~l~~~l~l~R---P~~~~~~~~~~~~G~~~a--g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--  154 (291)
                      ++++.|+|++|   |.......+|++.|..++  ....++.    ..++.++++.+++.+++|++||++|+|+|++|+  
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~----~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDL----KMLALFGCGALLLRGAGCTINDLLDRDIDKKVERT   79 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcH----HHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence            57888888886   666778888888877654  2211211    123344567788999999999999999999986  


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHH
Q 022848          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (291)
Q Consensus       155 p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~  234 (291)
                      ++||+++|++|+++++.+..++.++++++.+.++       +..+.+++++.++.++|+    .+||++++++++.|+++
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~-------~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~  148 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLN-------NYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGLTF  148 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHHHH
Confidence            6999999999999999998888888888777653       456777777778888998    39999999999999888


Q ss_pred             hHHHHHHHHHhhCCCCHHHHH-HHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          235 ISLPWWAGQALFGTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       235 g~lp~l~g~a~~g~~~~~~~l-l~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +..|+.++.++.|++++..++ +.+..++|+.+.++++.++|+|+|+++|++|+|+++
T Consensus       149 ~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~  206 (289)
T PLN02809        149 NWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRF  206 (289)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhh
Confidence            766666677888988876654 777788899999999999999999999999999874

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.96  E-value=1.7e-28  Score=226.19  Aligned_cols=192  Identities=21%  Similarity=0.212  Sum_probs=155.8

Q ss_pred             HHHHhhhCccchHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCccc
Q 022848           85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFH-WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPS  161 (291)
Q Consensus        85 ~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~-~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~s  161 (291)
                      |+|++++||+++...++++++|+++++... ++.    ..++.++++++++++++|++|||+|+|+|++|+  ++||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~----~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNP----PLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            469999999999999999999998874321 221    123444567788999999999999999999987  7999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHH-HHhhhCCchhHHHHHHHHHHHh-hhcccCCCcCcccccchhhHHHHHHHhHHHH
Q 022848          162 GAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLPW  239 (291)
Q Consensus       162 G~is~~~a~~~~~~l~~l~l~l~~~-l~~~~g~~~p~~~~l~~~~~~~-~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~  239 (291)
                      |++|+++++.+++++.++++.+... +       |+....+++++.++ .++||.   .+||++++ +..+|...|.+|+
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~-------~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~~  145 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFV-------NPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVPP  145 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHHH
Confidence            9999999999999988888774433 3       35556666666654 789994   59999986 5556666777777


Q ss_pred             HHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          240 WAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       240 l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +++ ++++|++++..+++++..++|+........++|.|+|+++|+||+|+++
T Consensus       146 l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~  198 (280)
T TIGR01473       146 LIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVK  198 (280)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCccc
Confidence            666 5677999998888899999999998888889999999999999999874

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=5e-28  Score=222.78  Aligned_cols=199  Identities=15%  Similarity=0.120  Sum_probs=146.3

Q ss_pred             HHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccccc
Q 022848           84 WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGA  163 (291)
Q Consensus        84 l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~  163 (291)
                      +|.+++++||.+|+...+|+.+|+.++++..+.  .++...+++   ....+.+.|.+|||+|+|.|+.|+++... .|.
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~~~~--~~l~~~l~~---~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~   74 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGGEIDW--LFVVGTVFF---LIPYNLAMYGINDVFDYESDLRNPRKGGV-EGA   74 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCCCCCh--HHHHHHHHH---HHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCc
Confidence            378999999999999999999999988543321  112212221   23344455667999999999999864433 588


Q ss_pred             cCHHHHHHHHHHHHHHHHH-HHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHH
Q 022848          164 ISENEVITQIWVLLLAGLG-LAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG  242 (291)
Q Consensus       164 is~~~a~~~~~~l~~l~l~-l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g  242 (291)
                      ++++++....+.+.++++. +++.+...   .+|.++.++.++++.++.||.||.|+|++++.+++..++.+....+++.
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~---~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~  151 (282)
T PRK13105         75 VLDRAMHRTTLWASVVTTVPFLVVLLAV---GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGL  151 (282)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            9999986655555555444 33333221   2467778888899999999999999999999777655555533323333


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       243 ~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +...+.+++..++++..+++|..+++++||+||+|+||+.|+||+|+++
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~l  200 (282)
T PRK13105        152 VLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVL  200 (282)
T ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHh
Confidence            4456677877888889999999999999999999999999999999875

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.3e-27  Score=221.05  Aligned_cols=200  Identities=22%  Similarity=0.153  Sum_probs=159.5

Q ss_pred             chhHHHHHhh---hCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848           81 TNKWKIRLQL---TKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (291)
Q Consensus        81 ~~~l~~~l~l---~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p  155 (291)
                      ++++++|+|+   .||......++|.+.|+.++....+.   .. .++..++++.++.+++|++||+.|+|+|++|+  +
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~---~~-~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS---LL-LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            3579999999   55666678888889997776322221   11 23344567788999999999999999999998  6


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (291)
Q Consensus       156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g  235 (291)
                      +||+++|++|+++++.++.++.++++.+.+.++..   .|+..+.+++++.+...+|+.    +||+..+.+++.|++.+
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~---~n~l~~~l~~~~~~~~~~Y~~----~KR~t~~~~~vlg~~~a  152 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQP---SRNLCLSLAFLALPPILIYPS----AKRWFAYPQAILALCWG  152 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHH----HHhccccchHHHHHHHH
Confidence            99999999999999999998888888777665321   156677777777777889993    99999999999988877


Q ss_pred             HHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          236 SLPWWAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       236 ~lp~l~g~a~~g~~~~~--~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .-|+.++.+++|++++.  .+++.+..++|+.+.+++++++|+|+|+++|++|+|+++
T Consensus       153 ~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~  210 (294)
T PRK12873        153 FAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSL  210 (294)
T ss_pred             hHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhc
Confidence            65566667888998863  334457889999999999999999999999999999864

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1e-27  Score=221.85  Aligned_cols=196  Identities=21%  Similarity=0.124  Sum_probs=155.8

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhc-------C-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------N-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN  153 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag-------~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n  153 (291)
                      .++|.|.++.|-.+.+..+.=+..|+.++.       + ++++  + +..++.+.++.+++.+++|++|||+|+|+|++|
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~-~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~   78 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--G-IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKN   78 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--C-HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence            468999999999998877776777877653       2 1111  0 122344455667899999999999999999999


Q ss_pred             C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHH
Q 022848          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (291)
Q Consensus       154 ~--p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g  231 (291)
                      +  ++||+++|++|+++++.+...+.++++.+...+       ||..+.++.++.++.++|+    .+||++++++++.|
T Consensus        79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~l-------n~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLG  147 (300)
T PRK12876         79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLL-------NPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILG  147 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHH
Confidence            9  799999999999999998876666666555554       4667777878888888998    49999999999999


Q ss_pred             HHHhHHHHHHHHHhhCC-CCH----HHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          232 ASYISLPWWAGQALFGT-LTP----DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       232 ~~~g~lp~l~g~a~~g~-~~~----~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ++++..|..++.++.|+ .++    ..+++++..++|+.+++++++++|+|+|++.|+||+|+++
T Consensus       148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~f  212 (300)
T PRK12876        148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARF  212 (300)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHH
Confidence            99887777676777776 555    3345667788888899999999999999999999999863

>PLN02878 homogentisate phytyltransferase

Probab=99.95  E-value=1.2e-27  Score=217.85  Aligned_cols=166  Identities=25%  Similarity=0.452  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHH
Q 022848          120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIF  199 (291)
Q Consensus       120 ~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~  199 (291)
                      ++..++..+++..+++.+...+|||+|+|+|++|||+||+++|++|+++++...+.+.++|+.+++.++.+     + .+
T Consensus        21 ~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~-----~-l~   94 (280)
T PLN02878         21 FFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSW-----P-LF   94 (280)
T ss_pred             HHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChH-----H-HH
Confidence            34455666777888999999999999999999999999999999999999999999999999998887532     2 22


Q ss_pred             HHHHHHHHhhhcccC--CCcCcccccchhhHHHHHHHhHH---HHHHH--HHhhC---CCCHHHHHHHHHHHHHHHHHHH
Q 022848          200 WLAVGGSLLSYIYSA--PPLKLKQNGWIGNFALGASYISL---PWWAG--QALFG---TLTPDIIVLTLLYSIAGLGIAI  269 (291)
Q Consensus       200 ~l~~~~~~~~~~YS~--pPlrlKr~~~~g~l~~g~~~g~l---p~l~g--~a~~g---~~~~~~~ll~l~~~l~~~~~~i  269 (291)
                      .....++++++.||.  ||+|+|++++++.....++-+..   ++..+  ..+.|   .+++..++..+.+++...++++
T Consensus        95 ~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i  174 (280)
T PLN02878         95 WALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIAL  174 (280)
T ss_pred             HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHH
Confidence            333455588999996  99999999988765443222222   33222  23334   2344555556677788889999


Q ss_pred             HhhcCChHHHHHcCCccceeeC
Q 022848          270 VNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       270 ~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .||++|+|||++.|+||+|+++
T Consensus       175 ~KDi~DieGD~~~Gi~Tlpv~l  196 (280)
T PLN02878        175 FKDIPDVEGDRIFGIRSFSVRL  196 (280)
T ss_pred             HhhCcCchhHHHCCCceechhh
Confidence            9999999999999999999974

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=9.8e-27  Score=216.04  Aligned_cols=195  Identities=21%  Similarity=0.265  Sum_probs=146.7

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC----
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN----  153 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n----  153 (291)
                      .++++|++++||+++.....+++.|.+++    |.+++.     ..++.+ +++.++..++|++|||+|+|.|++|    
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~-----~~~l~~-l~~~l~~~ag~~iND~~D~~~D~~~v~rt   76 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE-----LTIKAA-LIGLFGFEAGFVLNDYVDRKRDRLDVENT   76 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH-----HHHHHH-HHHHHHHHHHHHHhhHHHHhcCcchHhhh
Confidence            46899999999998888888877887664    444431     112222 3344555677999999999999875    


Q ss_pred             -----C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCccccc---
Q 022848          154 -----E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNG---  223 (291)
Q Consensus       154 -----~--p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~---  223 (291)
                           +  ++||+++|++|+++++.+++++.+++++++..+....   .+..+.+++.+.++++.|+     +|++.   
T Consensus        77 m~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~---~~~~~~l~~~~~~~~~~Y~-----~~kr~~~~  148 (297)
T PRK12871         77 LTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPN---SLYVFVIMLYSYGIEAFYQ-----VKKRNQKY  148 (297)
T ss_pred             hhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-----cccccccc
Confidence                 2  5899999999999999999999999988887765432   2345556666777888898     34431   


Q ss_pred             chhhHHHHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          224 WIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       224 ~~g~l~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ..+.+.-++.++. +.+.|++++|+++...++++++.++|+.+++.+||++|+|+|+++|+||+|+++
T Consensus       149 p~~~l~G~~~~~~-~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~  215 (297)
T PRK12871        149 PVAQLLGRTDFTL-FPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLY  215 (297)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeee
Confidence            2233322234444 555566788999988888889999999999999999999999999999999974

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=1.3e-25  Score=207.09  Aligned_cols=198  Identities=21%  Similarity=0.262  Sum_probs=125.8

Q ss_pred             cchhHHHHHhhhCccchHHHHHHHHHHHHhhcCC---CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCC
Q 022848           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNF---HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPY  156 (291)
Q Consensus        80 ~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~---~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~  156 (291)
                      ....+|.|++++||++|..++.|+++|.+++...   .++.  ....+++.++  +..+.+.|.+|||+|+|+|+.|+++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~--~~~~ll~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk   79 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSP--AAVALFAYFL--FPANVFLYGVNDVFDADTDELNPKK   79 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccH--HHHHHHHHHH--HHHHHHHhcchhhhhhhccccCCCc
Confidence            3468899999999999999999999999876321   1221  1111111111  1123345668999999999999865


Q ss_pred             CCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhH
Q 022848          157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (291)
Q Consensus       157 RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~  236 (291)
                      +.   |+...++.......+.+++.+++..+....   ++..+.+.+..++.++.||.||+|+|++++.+..+.|. + .
T Consensus        80 ~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~---~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~-~  151 (282)
T PRK12875         80 DR---EREVRYRGDRRVLVAVALSGALALAFLLVL---PPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-Y-I  151 (282)
T ss_pred             cC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-H-H
Confidence            43   221112211111111222222222222111   22223333445688999999999999999854443343 3 4


Q ss_pred             HHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          237 LPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       237 lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      +|.+++ ++++|++++..+  .+..++|+.++++.|+++|+|+|+++|+||+|+++
T Consensus       152 ~~~~~~y~~~tg~~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~l  205 (282)
T PRK12875        152 LPGVAAYALVSGSLPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVL  205 (282)
T ss_pred             HHHHHHHHHHcCCCcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhc
Confidence            666655 567888876543  33457899999999999999999999999999975

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.94  E-value=4.7e-26  Score=205.08  Aligned_cols=181  Identities=31%  Similarity=0.489  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCCccccccCHHHHHHH
Q 022848           97 PPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVITQ  172 (291)
Q Consensus        97 ~~~~~~~~~G~~~ag--~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~--n~p~RPi~sG~is~~~a~~~  172 (291)
                      ...+.+++.|...+.  ..++.  .    +....++.++.+.++|.+|||+|+|+|+.  |+|+||+++|+++++++...
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~   75 (257)
T PF01040_consen    2 PLSFLPVLAGLALASGGPFNWP--I----FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIF   75 (257)
T ss_pred             hHHHHHHHHHHHHHHcCCCCHH--H----HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHH
Confidence            456667777755442  23331  1    22222334578999999999999999999  78999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHHHHhhCCCCHH
Q 022848          173 IWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD  252 (291)
Q Consensus       173 ~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g~a~~g~~~~~  252 (291)
                      ++++.++++++++..       ++..+.+.+++.+.+++|| +|+++||+++++++.++++++..+.+++++..++.+..
T Consensus        76 ~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (257)
T PF01040_consen   76 ALILLLLGLLLALLL-------GPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPP  147 (257)
T ss_pred             HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHH
Confidence            888888888877443       3556677777777889999 78899999999999999988877777767777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          253 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       253 ~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .++.+.+.+++.......+|++|+|+|++.|+||+|+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~  186 (257)
T PF01040_consen  148 PFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLL  186 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHH
Confidence            888888888999999999999999999999999999753

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=1.5e-25  Score=206.67  Aligned_cols=198  Identities=22%  Similarity=0.159  Sum_probs=152.1

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccc
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS  161 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~s  161 (291)
                      +.++.++++.|+.+......++.++.....-.++..      ....+++.++.+.++|++|||+|+|+|++|+|+||.+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~-   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLLLGLPI------SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF-   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcChh------HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH-
Confidence            457899999999999888887766654321122211      1122334567899999999999999999999999988 


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCc-CcccccchhhHHHHHHHhHHHHH
Q 022848          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWW  240 (291)
Q Consensus       162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPl-rlKr~~~~g~l~~g~~~g~lp~l  240 (291)
                         |++++....+.+..+++.++.++....  .+|..+.+++++.+++++||.||. ++|+.+.+||+.+|..+|..|.+
T Consensus        75 ---s~~~~~~~~~~l~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~  149 (285)
T PRK12872         75 ---SETKAYGLFLLLNVLGLYLGAYLLAVI--GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLI  149 (285)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence               455666666666666666665553221  256677788888888999999875 58999999999999999988887


Q ss_pred             HHH-HhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          241 AGQ-ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       241 ~g~-a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .++ ...+.++...++.++..+++.+..++.+|++|+|+|+++|++|+|+++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~l  201 (285)
T PRK12872        150 LGVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVL  201 (285)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhc
Confidence            764 444456777777888889999999999999999999999999999874

>PLN02776 prenyltransferase

Probab=99.93  E-value=3.1e-24  Score=201.54  Aligned_cols=184  Identities=21%  Similarity=0.184  Sum_probs=150.9

Q ss_pred             hhCccchHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCccccccC
Q 022848           90 LTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAIS  165 (291)
Q Consensus        90 l~RP~~~~~~~~~~~~G~~~ag~--~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~sG~is  165 (291)
                      ++||+.....+++.+.|+.++..  +++      ..++..++++.++.+++|++||++|+|+|++|+  ++||+++|++|
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~------~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris   74 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAIDL------PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRIS   74 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence            58999999999999999998743  332      123445567888999999999999999999987  69999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHh-hhcccCCCcCcccccchhhHHHHHHHhHHHHHHH-H
Q 022848          166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG-Q  243 (291)
Q Consensus       166 ~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~-~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g-~  243 (291)
                      +++++.+++++.++++.+..+.      .|+..+.++++++++ ...||    .+||++++ |.++|...|.+|.++| .
T Consensus        75 ~~~A~~~~~~l~~~g~~~l~~~------~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~  143 (341)
T PLN02776         75 VPHAVAWAVVVGAAGVALLAYK------TNMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWA  143 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHH
Confidence            9999999998888777554332      145566666665444 56899    39999986 7899999997776655 6


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceee
Q 022848          244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSIL  290 (291)
Q Consensus       244 a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~  290 (291)
                      +++|++++..+++++..++|+........+.|.|+|+++|.+.+|+.
T Consensus       144 Avtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~  190 (341)
T PLN02776        144 AASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLA  190 (341)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCcc
Confidence            78899999999999999999998888888889999999999999973

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3e-25  Score=203.12  Aligned_cols=197  Identities=24%  Similarity=0.241  Sum_probs=164.2

Q ss_pred             cchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCC
Q 022848           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR  157 (291)
Q Consensus        80 ~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~R  157 (291)
                      .+.++|+|++++||+.+...+++.+.|+.++.....+    ...++..++++.+..++++++|+|+|+|+|++++  ++|
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~----~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R   89 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSIN----PLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR   89 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccccccc----HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence            5689999999999999999999999999988642211    1234555667788999999999999999999998  699


Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH-HhhhcccCCCcCcccccchhhHHHHHHHhH
Q 022848          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGS-LLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (291)
Q Consensus       158 Pi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~-~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~  236 (291)
                      |+++|+++|++++.++.++.++|+.+.++..      ||....++++++ +...+||.   .+||+..+ |+++|...|.
T Consensus        90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~v------n~laa~l~~~gi~~Yv~vYT~---~lKR~T~~-NiviGg~aGa  159 (304)
T COG0109          90 PLVTGLISPREALAFGLVLGVAGFSLLWFLV------NLLAAVLGLFGIFFYVVVYTL---WLKRRTPQ-NIVIGGFAGA  159 (304)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhh---hccCCccc-ceeeeecccc
Confidence            9999999999999999999999988885442      455666665554 45779994   89999986 8999988889


Q ss_pred             HHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceee
Q 022848          237 LPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSIL  290 (291)
Q Consensus       237 lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~  290 (291)
                      +|.+.| .+++|++++..+++++.+|+|+-.....-.++-.|+-+++|+.-+|++
T Consensus       160 ~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv  214 (304)
T COG0109         160 MPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVV  214 (304)
T ss_pred             ccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCccccc
Confidence            998766 688999999999999999999888777777777777799999988874

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.89  E-value=7.1e-22  Score=182.79  Aligned_cols=147  Identities=21%  Similarity=0.218  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhh
Q 022848          131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSY  210 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~  210 (291)
                      +.+...++|++|||+|+|+|++|+|+||.+    +++.++.++.+..++|+.+++..+       |.  .+++++.+.++
T Consensus        67 ~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g-------~~--ll~ll~~l~g~  133 (307)
T PRK13591         67 GGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDG-------ML--LLAFLPFITGY  133 (307)
T ss_pred             HHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHh-------HH--HHHHHHHHHHH
Confidence            345788999999999999999999999986    778888877777777777766544       32  34567788899


Q ss_pred             cccCC----Cc--CcccccchhhHHHHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCC
Q 022848          211 IYSAP----PL--KLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL  284 (291)
Q Consensus       211 ~YS~p----Pl--rlKr~~~~g~l~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~  284 (291)
                      +||.+    |.  ++|+++.+||+++|+.+|...++......+.+ .......+..+...++++.+||++|+|+|++.|+
T Consensus       134 lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~  212 (307)
T PRK13591        134 LYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGI  212 (307)
T ss_pred             HhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCC
Confidence            99986    54  88888888999999999875543211112221 1111222223333467788999999999999999


Q ss_pred             ccceeeC
Q 022848          285 QVSSILL  291 (291)
Q Consensus       285 rTlpV~l  291 (291)
                      +|+|+++
T Consensus       213 kTLPV~l  219 (307)
T PRK13591        213 KTLPVSL  219 (307)
T ss_pred             eeEEEEE
Confidence            9999974

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=1.5e-21  Score=180.95  Aligned_cols=152  Identities=26%  Similarity=0.334  Sum_probs=114.6

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCC
Q 022848           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYR  157 (291)
Q Consensus        81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n--~p~R  157 (291)
                      ++++++|++++||++|...++.+. +...++. .+..  .... .+..+++..+..+++|++||++|+|+|++|  +|+|
T Consensus         8 ~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~~~~--~~~~-~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R   83 (295)
T PRK12324          8 KNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLLNPG--ALLK-VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR   83 (295)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhcccc--hHHH-HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence            458999999999999999888554 4344333 2211  1112 223334456788999999999999999998  4899


Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHH
Q 022848          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (291)
Q Consensus       158 Pi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~l  237 (291)
                      |+++|++++++++.++.++.++++++++.++       |..+.+.+...+..+.||.   ++|++++++++.++++++ +
T Consensus        84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~-------~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~-l  152 (295)
T PRK12324         84 PIASGVVSVSLAYILAVVLLVASLALAYLLS-------PKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFV-L  152 (295)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHH-H
Confidence            9999999999999999999988888877654       4445555556677889994   899999999999988875 5


Q ss_pred             HHHHHHHhhC
Q 022848          238 PWWAGQALFG  247 (291)
Q Consensus       238 p~l~g~a~~g  247 (291)
                      ++++|.+..+
T Consensus       153 r~~~G~~a~~  162 (295)
T PRK12324        153 RAIAGGVAIG  162 (295)
T ss_pred             HHHHHHHHhC
Confidence            7766655444

>PRK08238 hypothetical protein; Validated

Probab=99.88  E-value=3e-21  Score=189.79  Aligned_cols=189  Identities=23%  Similarity=0.297  Sum_probs=145.7

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (291)
Q Consensus        79 ~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~-~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p  155 (291)
                      ..+.++++|++++||+.|...++.++ +++.++.+ +.  .. +..++..++++.++.+++|++||++|+|+|++|+  +
T Consensus       186 ~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~~~~~--~~-~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~  261 (479)
T PRK08238        186 PRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQFGDL--QA-LLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKR  261 (479)
T ss_pred             CCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcccCCh--HH-HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Confidence            44568999999999999998888644 77776554 32  11 2223334455678999999999999999999994  8


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (291)
Q Consensus       156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g  235 (291)
                      +||+++|++|+++++.++.+++++++++++.++       |..+.+.+..+++.++||   +++||+++++++++|+++.
T Consensus       262 ~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~-------~~~~~~~~~~~~~~~~Ys---~~lKr~~~~~~~~la~~~~  331 (479)
T PRK08238        262 RRPFASGALPIPFGLAAAPLLLLAGLALALALG-------PAFLLVLLAYLALTLAYS---LRLKRKVLVDVLTLAALYT  331 (479)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHhh---HHhcCCccccchHHHHHHH
Confidence            999999999999999999999999988887754       444555556667788999   4899999999999998885


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCC
Q 022848          236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL  284 (291)
Q Consensus       236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~  284 (291)
                       +++++|.+..+ +++..|++...+ ++.+...+.+...|+++++..|.
T Consensus       332 -lr~~~G~~a~~-~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        332 -LRIIAGAAAIG-VALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             -HHHHHHHHHhc-cCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence             57666655554 666677665333 34567888999999998888775

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.86  E-value=4e-21  Score=176.55  Aligned_cols=145  Identities=17%  Similarity=0.145  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhh
Q 022848          130 SGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLS  209 (291)
Q Consensus       130 a~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~  209 (291)
                      ..++..+++|++|||+|+|+|++|+|+||+|+|++|+++++.+++.+.++++.++...            ...+...++.
T Consensus        54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~------------~i~i~~~~i~  121 (299)
T PRK13592         54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF------------MNNVGWFLFL  121 (299)
T ss_pred             HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence            3567889999999999999999999999999999999999998888866666555433            1122233445


Q ss_pred             hcc-----cCCCcCcccccchhhHHHHHHHhHHHHHH--------HHHhhCCCCHH--HHHHHHHHHHHHHHHHHHhhcC
Q 022848          210 YIY-----SAPPLKLKQNGWIGNFALGASYISLPWWA--------GQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFK  274 (291)
Q Consensus       210 ~~Y-----S~pPlrlKr~~~~g~l~~g~~~g~lp~l~--------g~a~~g~~~~~--~~ll~l~~~l~~~~~~i~~d~~  274 (291)
                      +.|     +.   ++|+.++.||+.++...+.....+        +....|.....  .+.+++..++..+++++.+|++
T Consensus       122 ~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~Kdie  198 (299)
T PRK13592        122 YIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIR  198 (299)
T ss_pred             HHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            556     74   899999999999998776433111        11122322222  2466778888899999999999


Q ss_pred             ChHHHHHcCCccceeeC
Q 022848          275 SVEGDRAMGLQVSSILL  291 (291)
Q Consensus       275 DiegDr~~G~rTlpV~l  291 (291)
                      | |||++ |.+|+|+.+
T Consensus       199 D-~gd~~-~~~Tlpi~~  213 (299)
T PRK13592        199 A-PKDET-EYVTYSKLF  213 (299)
T ss_pred             C-Ccccc-CCeeechhc
Confidence            9 88885 599999864

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.80  E-value=8.8e-20  Score=163.48  Aligned_cols=199  Identities=23%  Similarity=0.261  Sum_probs=152.7

Q ss_pred             ccchhHHHHHhhhC---ccchHHHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC
Q 022848           79 QETNKWKIRLQLTK---PVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE  154 (291)
Q Consensus        79 ~~~~~l~~~l~l~R---P~~~~~~~~~~~~G~~~ag-~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~  154 (291)
                      .++.+|+.|.|++|   |.......+|.....+++. .-.++   .+..+-.+-.+.+++.+++|++||.+|+|.|++.+
T Consensus        59 ~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p---~~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVe  135 (353)
T KOG1381|consen   59 SSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLP---SIKMLALFGVGALLMRGAGCTINDLWDKDLDAKVE  135 (353)
T ss_pred             cCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccc---hhHHHHHhcccHHHhccCCceehhhhhhhhhhhHh
Confidence            45567999999996   6666666677777766542 21121   12222222346788999999999999999999987


Q ss_pred             --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHH
Q 022848          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (291)
Q Consensus       155 --p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~  232 (291)
                        +.||+++|.+|+++++.+--+.+.+++++...+       ||....++..++...+.|+.    +||..++.+++.|.
T Consensus       136 RtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqL-------n~ysi~lg~~sl~~v~~ypl----~kr~TY~pq~vLgl  204 (353)
T KOG1381|consen  136 RTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQL-------NWYSIALGASSLALVITYPL----MKRFTYWPQLVLGL  204 (353)
T ss_pred             hhcccccccCCcchhHHHHHHHHHHHHhHHHHHhc-------cHHHHHhcccccccEEEeeh----hhhcchhHHHHHhh
Confidence              689999999999999987777777776666554       56677788777777888984    99999999999999


Q ss_pred             HHhHHHHHHHHHhhCCCCHHH-HHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          233 SYISLPWWAGQALFGTLTPDI-IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       233 ~~g~lp~l~g~a~~g~~~~~~-~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      ++..-..+++-++.|+.++.. +.+-+--.+|++..+.++..+|.+.|.+.|+++-+.++
T Consensus       205 tfnwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrf  264 (353)
T KOG1381|consen  205 TFNWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRF  264 (353)
T ss_pred             hcchhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhc
Confidence            887767777777888877643 33445556799999999999999999999999987664

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.70  E-value=1.9e-18  Score=151.85  Aligned_cols=219  Identities=17%  Similarity=0.212  Sum_probs=166.9

Q ss_pred             hhhccccccccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 022848           70 QLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLE-DVAKSIVCMIMSGPCLTGYTQTINDWYDRE  148 (291)
Q Consensus        70 ~~~~~~~~~~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~-~~~~~ll~~lla~~l~~~a~~~iNd~~D~~  148 (291)
                      +|-|-...+...++.+.|+-..||+....++.|.++|.+++-+.+|... .....++|. ++...+++++|.+|.|+|..
T Consensus        47 rltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a-~avlavh~agnlvntyfdf~  125 (359)
T KOG4581|consen   47 RLTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCA-FAVLAVHCAGNLVNTYFDFI  125 (359)
T ss_pred             cccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHH-hhheeeecccchhhhhhhhh
Confidence            6666666666779999999999999999999999999887643333211 112223343 34556899999999999985


Q ss_pred             --hhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchh
Q 022848          149 --IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG  226 (291)
Q Consensus       149 --~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g  226 (291)
                        +|.+...+|.+++..+.+.++..++..+..+|++.+..+.+..-..---..+++..++.-.+.|+.+ +.+|+..+ |
T Consensus       126 kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg-igfkyial-g  203 (359)
T KOG4581|consen  126 KGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG-IGFKYIAL-G  203 (359)
T ss_pred             hccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc-cceEEEec-c
Confidence              7887778999999999999999999999998888776665432000001234455555667899986 68999886 7


Q ss_pred             hHHHHHHHhHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848          227 NFALGASYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL  291 (291)
Q Consensus       227 ~l~~g~~~g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l  291 (291)
                      .+++-+.+|-+.++.. ..++|++++..+..++|..+-+-++...||.+|.|+||++|+-|+++.+
T Consensus       204 dliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlaili  269 (359)
T KOG4581|consen  204 DLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILI  269 (359)
T ss_pred             CEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEee
Confidence            7776566665555544 4678999988888889999999999999999999999999999999864

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.69  E-value=2.3e-17  Score=151.15  Aligned_cols=189  Identities=20%  Similarity=0.247  Sum_probs=146.3

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCC
Q 022848           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (291)
Q Consensus        82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~a-g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RP  158 (291)
                      ...+.|+||+||+...+.+++.+.|++++ +.++++      .+++..++..+..++.|.+|++++...|.+++  +.||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~------~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFP------TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccCCCcc------hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            56889999999999999999999999987 556653      35555667788999999999999999999998  6899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH-hhhcccCCCcCcccccchhhHHHHHHHhHH
Q 022848          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (291)
Q Consensus       159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~-~~~~YS~pPlrlKr~~~~g~l~~g~~~g~l  237 (291)
                      +++|+++|..++.++.+....|+.+..+ +     .||....++...++ ...+|+    .+||..+ .|..+|...|.+
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~-g-----vNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAI  234 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAF-G-----VNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAI  234 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeee-c-----ccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccC
Confidence            9999999999999887776666555433 2     37877777766543 466888    5999987 589999988999


Q ss_pred             HHHHH-HHhhCCCCHHHHHHHHHHHHHHHHH--HHHhhcCChHHHHHcCCcccee
Q 022848          238 PWWAG-QALFGTLTPDIIVLTLLYSIAGLGI--AIVNDFKSVEGDRAMGLQVSSI  289 (291)
Q Consensus       238 p~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~--~i~~d~~DiegDr~~G~rTlpV  289 (291)
                      |.+.| .+..|.+++..|+++...+.|.+-.  .+..+++|  +-.++|.+-.++
T Consensus       235 PPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~--DYs~~GY~Mma~  287 (409)
T KOG1380|consen  235 PPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRN--DYSKAGYRMMAV  287 (409)
T ss_pred             CccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhhch--hhhhccEEEEEe
Confidence            87655 6778999999999988888887643  23333332  225666665543

>PRK13591 ubiA prenyltransferase; Provisional

Probab=94.36  E-value=0.21  Score=46.91  Aligned_cols=72  Identities=25%  Similarity=0.301  Sum_probs=40.7

Q ss_pred             HhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHHHH---HHHHHHHHHhhhCCchhHHHHH-HHHHHHhhhcccC
Q 022848          140 TINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLA---GLGLAGLLDVWAGHDFPTIFWL-AVGGSLLSYIYSA  214 (291)
Q Consensus       140 ~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~~l---~l~l~~~l~~~~g~~~p~~~~l-~~~~~~~~~~YS~  214 (291)
                      ++||+-|.|.|+.+. +.-|+.=|+   +.+..+...+.++   ..+++..+++..  ..|.+.+. .+.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~--~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIA--FEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHcC
Confidence            789999999999987 444665553   3333333333332   223333334332  23544442 3455667788998


Q ss_pred             CC
Q 022848          215 PP  216 (291)
Q Consensus       215 pP  216 (291)
                      |+
T Consensus       272 ~~  273 (307)
T PRK13591        272 PF  273 (307)
T ss_pred             Cc
Confidence            65

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=92.86  E-value=1.9  Score=40.00  Aligned_cols=33  Identities=21%  Similarity=0.061  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ..+.+.+-.++|++.|+|.|+... +.-|..-|.
T Consensus       168 ~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        168 VGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            345677788999999999999887 666766564

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=92.63  E-value=2.4  Score=38.90  Aligned_cols=45  Identities=20%  Similarity=0.090  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHHHHH
Q 022848          133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAG  180 (291)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~~l~  180 (291)
                      +.....+++||.-|+|.|++++ +.=|..-|+   +.+..+...+.++.
T Consensus       172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~~~~  217 (285)
T PRK12872        172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILNLLF  217 (285)
T ss_pred             HHHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHHHHH
Confidence            3455666899999999999976 555665564   44444444444333

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=92.37  E-value=2.3  Score=39.80  Aligned_cols=41  Identities=15%  Similarity=-0.068  Sum_probs=27.2

Q ss_pred             HHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHH
Q 022848          133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVL  176 (291)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l  176 (291)
                      +...+....||+-|+|.|+.+. +.-|..-|   ++.+.....++
T Consensus       194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~~~l  235 (306)
T TIGR02056       194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWICVGA  235 (306)
T ss_pred             HHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHHHHH
Confidence            3556677899999999999886 44555445   34444444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=92.30  E-value=1.6  Score=42.19  Aligned_cols=31  Identities=19%  Similarity=0.080  Sum_probs=24.5

Q ss_pred             HHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      +...+....|||-|+|.|+... +.-|..-|.
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            4566778899999999999886 666776664

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=92.17  E-value=1.4  Score=40.32  Aligned_cols=32  Identities=22%  Similarity=0.064  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ++.+...+.+||+.|+|.|+.+. +.-|..-|.
T Consensus       165 ~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        165 FLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            44556678899999999999887 566665554

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=91.75  E-value=1.7  Score=40.06  Aligned_cols=33  Identities=21%  Similarity=-0.011  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      .++.+..-..+|++.|+|.|+.+. +.-|..-|.
T Consensus       174 ~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        174 CIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            455677777899999999999887 666666664

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=91.70  E-value=3.5  Score=38.76  Aligned_cols=30  Identities=23%  Similarity=0.093  Sum_probs=23.3

Q ss_pred             HHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          134 LTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       134 ~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ...+....||+.|+|.|+... +.-|..-|+
T Consensus       201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            455668899999999999886 566766664

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=91.68  E-value=1.9  Score=39.75  Aligned_cols=35  Identities=20%  Similarity=0.032  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          129 MSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       129 la~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ++.++.+..-..+|++.|+|.|+... |.-|..-|.
T Consensus       167 ~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       167 LANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            34556677888999999999999886 667777774

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=91.47  E-value=2.3  Score=39.15  Aligned_cols=33  Identities=21%  Similarity=0.020  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      .++.+..-..+||..|+|.|+... |.-|..-|.
T Consensus       167 ~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       167 VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            345566777899999999998876 666776663

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=91.21  E-value=2.5  Score=40.12  Aligned_cols=44  Identities=14%  Similarity=0.106  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHH
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLL  177 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~  177 (291)
                      ..+...+..++||+-|+|.|+... +.-|+.=|+   +.+..++....
T Consensus       189 ~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~---~~a~~i~~~~~  233 (331)
T PRK12392        189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA---KNTFLVSFIII  233 (331)
T ss_pred             HHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH---hhHHHHHHHHH
Confidence            345667778899999999999886 455665553   44444444333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=91.05  E-value=10  Score=35.17  Aligned_cols=54  Identities=15%  Similarity=-0.040  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLAGLL  187 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l  187 (291)
                      ..+...+...+|++-|+|.|+..+ +.-|..-|   .+.+..++.++.+++.++-+..
T Consensus       174 ~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG---~~~a~~~~~~~~~~a~~~~~~~  228 (282)
T PRK12875        174 GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLG---ERRTYAYCAACWLLAAAAFAAV  228 (282)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHcCCccchhhcc---HhhHHHHHHHHHHHHHHHHHHH
Confidence            446677778999999999999876 44444334   4555555555554444443333

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=91.01  E-value=2.8  Score=39.29  Aligned_cols=28  Identities=25%  Similarity=0.128  Sum_probs=22.4

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCCCCCCc
Q 022848          132 PCLTGYTQTINDWYDREIDAINEPYRPI  159 (291)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~p~RPi  159 (291)
                      .+..+..+..|+..|.|+|+.|+++.+.
T Consensus       186 gil~~~Il~aNNirDie~D~~~gk~TLa  213 (303)
T COG1575         186 GILIANILLANNLRDIEEDIRNGKYTLA  213 (303)
T ss_pred             HHHHHHHHHhcccccchhHHhcCCccee
Confidence            3456778889999999999999876543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=90.89  E-value=2.2  Score=39.75  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ..+.+.+-..+|++.|+|.|+... |.-|..-|.
T Consensus       176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence            346777788999999999998876 777777665

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=90.62  E-value=2.9  Score=39.08  Aligned_cols=33  Identities=21%  Similarity=0.025  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      .++.+..-..+||+.|+|.|+.++ +.-|+.-|+
T Consensus       184 ~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~  217 (297)
T PRK12871        184 FYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM  217 (297)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence            345677788999999999999987 667777775

>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]

Probab=89.79  E-value=12  Score=31.98  Aligned_cols=121  Identities=12%  Similarity=0.118  Sum_probs=64.0

Q ss_pred             HHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCc---hhHHHHHHHHHHHhhh
Q 022848          134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSY  210 (291)
Q Consensus       134 ~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~---~p~~~~l~~~~~~~~~  210 (291)
                      ...+++..++.-+...+...+|.      -.++..++-..+..+.+..+++.++.+..+..   .+..+.+.++-..+..
T Consensus        19 ~a~gs~~~~~~~~~wy~~L~kP~------w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~   92 (161)
T COG3476          19 VALGSFFISSRDPNWYNNLKKPF------WLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLLQLILNF   92 (161)
T ss_pred             HHHHHHHhccccHHHHHhccCCC------CCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Confidence            44455566666565666666652      12344454444444445555555555543311   2334444445556677


Q ss_pred             cccCCCcCcccc-cchhhHHHHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 022848          211 IYSAPPLKLKQN-GWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG  264 (291)
Q Consensus       211 ~YS~pPlrlKr~-~~~g~l~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~  264 (291)
                      .||  |+-+|-+ +..|.+..+..  .+..+....+..+.+...-.+.+|+.+|.
T Consensus        93 aws--piff~l~~l~~a~i~~lll--~~~vl~l~i~~~~~s~~As~LLiPYllW~  143 (161)
T COG3476          93 AWS--PIFFGLRSLGAALIIILLL--WIAVLVLTIIVWPISKTASLLLIPYLLWS  143 (161)
T ss_pred             HHH--HHHHhhcCcchHHHHHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            888  4556643 33344443322  23333334456677776666777888885

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=89.79  E-value=5.1  Score=36.82  Aligned_cols=39  Identities=18%  Similarity=0.034  Sum_probs=26.1

Q ss_pred             HHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHH
Q 022848          134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV  175 (291)
Q Consensus       134 ~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~  175 (291)
                      ...+...+||+-|+|.|+.+. +.-|..-|+   +.+..+...
T Consensus       173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~---~~a~~l~~~  212 (283)
T TIGR01476       173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV---KRAAIVAVT  212 (283)
T ss_pred             HHHHHHHHHhccchhhHHHcCCcCcceEEcH---HHHHHHHHH
Confidence            445567899999999999986 445655554   444443333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=89.47  E-value=3.6  Score=38.59  Aligned_cols=44  Identities=7%  Similarity=-0.090  Sum_probs=27.8

Q ss_pred             HHHHHHHHhhhhhchhhhhcCCCCC-CccccccCHHHHHHHHHHHHHH
Q 022848          133 CLTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLA  179 (291)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~n~p~R-Pi~sG~is~~~a~~~~~~l~~l  179 (291)
                      +........||+-|+|+|+.+.++. +.   ++.++.+..+...+.+.
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~l~~~  229 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPWIVGL  229 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHHHHHH
Confidence            3456677899999999999997543 33   23345554444333333

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=88.81  E-value=5.9  Score=36.85  Aligned_cols=32  Identities=16%  Similarity=0.045  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      .+.+..-..+|++.|+|.|++.. |.-|..-|.
T Consensus       172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            34455666788999999998876 777777775

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=88.24  E-value=4.1  Score=37.83  Aligned_cols=36  Identities=22%  Similarity=-0.013  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccccC
Q 022848          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAIS  165 (291)
Q Consensus       130 a~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is  165 (291)
                      ..++.+.+-.++|++.|+|.|++.. +.-|+.-|.-+
T Consensus       174 ~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~  210 (290)
T PRK12870        174 ATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYA  210 (290)
T ss_pred             HHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcccc
Confidence            3456788888999999999999887 66677666533

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=88.02  E-value=5.1  Score=37.31  Aligned_cols=35  Identities=23%  Similarity=0.026  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          129 MSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       129 la~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ++.++-+.+-.++.++.|+|.|++.. +.-|+.=|.
T Consensus       166 ~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~  201 (286)
T PRK12895        166 ISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGI  201 (286)
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCC
Confidence            34556777778999999999999987 666665554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=87.37  E-value=6.1  Score=36.45  Aligned_cols=34  Identities=21%  Similarity=-0.016  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       130 a~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ...+-+..-...|.+.|+|.|++.+ |.-|..-|.
T Consensus       170 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  204 (282)
T PRK12848        170 ANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR  204 (282)
T ss_pred             HHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence            3455677777899999999999887 677776665

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=87.08  E-value=4  Score=38.49  Aligned_cols=45  Identities=18%  Similarity=0.144  Sum_probs=28.8

Q ss_pred             HHHHHHHHhhhhhchhhhhcCCCC-CCccccccCHHHHHHHHHHHHHHH
Q 022848          133 CLTGYTQTINDWYDREIDAINEPY-RPIPSGAISENEVITQIWVLLLAG  180 (291)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~n~p~-RPi~sG~is~~~a~~~~~~l~~l~  180 (291)
                      +........||+-|+|.|+.+.++ -|.   ++.++.+..+...+.+++
T Consensus       200 ~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a  245 (317)
T PRK13387        200 FTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYAS  245 (317)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHH
Confidence            456666899999999999999753 233   234455555444444433

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=87.05  E-value=6.4  Score=36.04  Aligned_cols=43  Identities=23%  Similarity=0.121  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHH
Q 022848          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLL  177 (291)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~  177 (291)
                      ++...+-.++||+.|.|.|+.++ |.-|..-|.   +.+..+...+.
T Consensus       167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~---~~t~~~~~~~~  210 (276)
T PRK12882        167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV---RKALYVAAAFL  210 (276)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH---HHHHHHHHHHH
Confidence            34566778999999999999887 666665554   44444433333

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=86.89  E-value=7.5  Score=36.61  Aligned_cols=33  Identities=24%  Similarity=0.031  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      .++.+..-..++++.|+|.|+... |.-|..-|.
T Consensus       201 ~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  234 (314)
T PRK12878        201 SIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD  234 (314)
T ss_pred             HHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence            445666777788999999999876 666776665

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=86.62  E-value=2.6  Score=38.74  Aligned_cols=32  Identities=25%  Similarity=0.082  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ++.+.+-.++||+-|+|.|+.++ |.-|..-|.
T Consensus       164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~  196 (279)
T PRK09573        164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYGI  196 (279)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence            34555667789999999999876 666776663

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=86.61  E-value=6.4  Score=36.29  Aligned_cols=48  Identities=21%  Similarity=0.084  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCCC-CCCccccccCHHHHHHHHHHHHHHHHH
Q 022848          132 PCLTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAGLG  182 (291)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~p-~RPi~sG~is~~~a~~~~~~l~~l~l~  182 (291)
                      .+........||+-|+|.|+.+.. .-|..=|   ++.+..+...+.+++.+
T Consensus       178 ~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~~~  226 (293)
T PRK06080        178 GLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALAYL  226 (293)
T ss_pred             HHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHHHH
Confidence            345667778999999999999863 3344334   34444444444444443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=86.42  E-value=3.9  Score=38.27  Aligned_cols=35  Identities=14%  Similarity=0.004  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCCcccc
Q 022848          128 IMSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (291)
Q Consensus       128 lla~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG  162 (291)
                      .++.++.+.+-.++|++-|+|.|++.. +.-|+.-|
T Consensus       183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G  218 (300)
T PRK13106        183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG  218 (300)
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence            345566777888999999999998876 66676556

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=85.47  E-value=9.1  Score=35.52  Aligned_cols=46  Identities=7%  Similarity=-0.058  Sum_probs=29.6

Q ss_pred             HHHHHHHHhhhhhchhhhhcCCCCC-CccccccCHHHHHHHHHHHHHHHH
Q 022848          133 CLTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLAGL  181 (291)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~n~p~R-Pi~sG~is~~~a~~~~~~l~~l~l  181 (291)
                      +........||.-|+|+|+.+.++. +.   ++.++.+..+...+..++.
T Consensus       172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~y  218 (285)
T TIGR02235       172 LATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISLSY  218 (285)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHHHH
Confidence            4566778899999999999997532 33   3345555554444444333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=85.41  E-value=4.6  Score=37.93  Aligned_cols=31  Identities=19%  Similarity=0.014  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhhhhhchhhhhcCC-CCCCcccc
Q 022848          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (291)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG  162 (291)
                      .+...+..++||+-|+|.|+++. +.-|+.=|
T Consensus       192 ~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG  223 (308)
T PRK12887        192 LVFTFAIAIFKDIPDMEGDRQYQITTFTLRLG  223 (308)
T ss_pred             HHHHHHHHHHHhccchhhHHHcCCcchhHHHh
Confidence            45666778899999999999987 44454344

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=83.72  E-value=16  Score=34.11  Aligned_cols=34  Identities=21%  Similarity=0.019  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       130 a~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      +.++-+..-.++=.+.|+|.|++.. |.-|..-|.
T Consensus       178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~  212 (294)
T PRK12873        178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS  212 (294)
T ss_pred             HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence            3455666666777888999999988 777887775

>PRK13592 ubiA prenyltransferase; Provisional

Probab=83.06  E-value=3.8  Score=38.43  Aligned_cols=31  Identities=26%  Similarity=0.210  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCChHHHHHc
Q 022848          252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAM  282 (291)
Q Consensus       252 ~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~  282 (291)
                      +.++..+..++...+-.++||+.|+|-|+.+
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN   77 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRL   77 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhc
Confidence            4444455566666778899999999999875

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=82.49  E-value=16  Score=33.72  Aligned_cols=34  Identities=21%  Similarity=0.009  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhhhhhchhhhhcCC-CCCCcccc
Q 022848          129 MSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (291)
Q Consensus       129 la~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG  162 (291)
                      ++..+...+-.+++|+-|+|-|+++. +.-|..-|
T Consensus       174 ~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G  208 (289)
T COG0382         174 LAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFG  208 (289)
T ss_pred             HHHHHHHHHHHHHHhccCccchHhcCCcchHHHhC
Confidence            34456777888999999999999987 44455444

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=81.10  E-value=36  Score=31.63  Aligned_cols=33  Identities=27%  Similarity=0.229  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      .++-+..-.++-.+.|+|.|++.. |.-|..-|.
T Consensus       175 ~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~  208 (289)
T PLN02809        175 GVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD  208 (289)
T ss_pred             HHHHHHHHHHHHHHhchhhHHhCCCcccchhhcH
Confidence            344454455677778999999987 777776665

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=80.49  E-value=20  Score=32.72  Aligned_cols=30  Identities=23%  Similarity=0.166  Sum_probs=23.0

Q ss_pred             HHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848          134 LTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (291)
Q Consensus       134 ~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~  163 (291)
                      ...+-...||+-|+|.|++.. +.-|..-|.
T Consensus       166 ~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~  196 (277)
T PRK12883        166 VNVAREIMKDIEDIEGDKAKGAKTLPIIIGK  196 (277)
T ss_pred             HHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence            445666789999999999886 666776664

>PLN02922 prenyltransferase

Probab=80.05  E-value=12  Score=35.36  Aligned_cols=44  Identities=9%  Similarity=0.015  Sum_probs=27.8

Q ss_pred             HHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHH
Q 022848          133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  178 (291)
Q Consensus       133 l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~  178 (291)
                      +........||+-|+|.|+.++++...+  ++.++.+..+...+..
T Consensus       199 ll~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~l~~  242 (315)
T PLN02922        199 LTTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHHHHH
Confidence            4556778899999999999998643221  2334555444433333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 38 RRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQE 80
          ++L           +K  A D APA         L IK A  E
Sbjct: 23 KKLQ--------ASLKLYADDSAPA---------LAIK-ATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00