Citrus Sinensis ID: 022855

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ
Secondary Structure (PSIPRED)
cHHHHccHHHHHHHHcHHHHHHHHHccHHHHHHHHHcHHHHHcccccHHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHccHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHccHHHHHHHccHHHHHHHHHHcHHHHHHHHHccHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHccHHHHHHHHHHHccHHHHHHHHHccHHHHccHHHcHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mreimnmpvvqnlmnnpEIMRNLimnnpqmreiidrnpelahilndpSTLRQTLEAARNPELMREMMRNTDRamsniesspEGFNMLRRMYETVqepflnatsmagnagndnsnPFAALLgtqggnqaregsnnpstttsesttgspapntnplpnpwmaagtggaqtnttrssslgdarpqtpagiaglsspgfedIFGAMQDTNSLNQMLQNPAVTQMMQSLLsnpqymnqilglnpqlrsmVDSNSQLREMIqnpeflrqltnpeTMQQMVTLQQFLLTQLGRAQSTQ
Flexible Loop (DISEMBL)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ
Low Complexity Region (SEG)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARegsnnpstttsesttgspAPNTNPLPNPWMaagtggaqtnttRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ
Disordered region (IsUnstruct)
**********************LI*****************************************************************************************************************************************************************************************************************IL**************************************VTLQQFLLT*********
Disordered Region (DISOPRED)
**E***MPVVQNLMNNPEIMR****************************************************************MLRR**********************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQG************************PNTNPLPNPWMAAGT******************QTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ
Disordered Region (DISPRO)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMA*******************************************************************************AGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQL*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9JJP9	582	Ubiquilin-1 OS=Rattus nor	yes	no	0.896	0.448	0.398	6e-45
Q5R684	589	Ubiquilin-1 OS=Pongo abel	yes	no	0.903	0.446	0.369	7e-43
Q9UMX0	589	Ubiquilin-1 OS=Homo sapie	yes	no	0.903	0.446	0.369	7e-43
Q8R317	582	Ubiquilin-1 OS=Mus muscul	yes	no	0.903	0.451	0.368	2e-41
Q99NB8	596	Ubiquilin-4 OS=Mus muscul	no	no	0.890	0.434	0.369	1e-37
Q9NRR5	601	Ubiquilin-4 OS=Homo sapie	no	no	0.883	0.427	0.366	2e-37
Q9NIF3	523	Ubiquilin OS=Dictyosteliu	yes	no	0.457	0.254	0.459	3e-32
Q9QZM0	638	Ubiquilin-2 OS=Mus muscul	no	no	0.391	0.178	0.546	4e-31
Q9UHD9	624	Ubiquilin-2 OS=Homo sapie	no	no	0.384	0.179	0.555	6e-31
Q8C5U9	658	Ubiquilin-3 OS=Mus muscul	no	no	0.477	0.211	0.386	2e-26

>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 175/311 (56%), Gaps = 50/311 (16%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P+ +RQTLE ARNP
Sbjct: 177 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPNIMRQTLELARNP 236

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMRN +R +SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+
Sbjct: 237 AMMQEMMRNQERDLSNLESIPGGYNALRRMYTDIQEPMLNAAQE-----QFGGNPFASLV 291

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWM--------AAGTGGAQTNTTR 172
                          S +++E T  S   N +PLPNPW         A+G+ G+ TNT  
Sbjct: 292 S--------------SPSSAEGTQPSRTENRDPLPNPWAPQTPQSSPASGSTGSTTNTV- 336

Query: 173 SSSLGDARPQTPAGI----------AGLS---SPGFEDIFGAMQDTNSLNQ-MLQNPAVT 218
           S+S G+A   TPAG           AG S   +PG + +   + +   L Q ML  P + 
Sbjct: 337 STSAGNAT-STPAGQGTSGPNLVPGAGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMR 395

Query: 219 QMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-------QNPEFLRQLTNPETMQ 271
            MMQSL  NP    Q++  NP          Q+R+ +       QNP+ L  ++NP  MQ
Sbjct: 396 SMMQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQ 455

Query: 272 QMVTLQQFLLT 282
            ++ +QQ L T
Sbjct: 456 ALLQIQQGLQT 466

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors. Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.
Rattus norvegicus (taxid: 10116)

>sp|Q5R684|UBQL1_PONAB Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1

 Score =  174 bits (441), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 168/306 (54%), Gaps = 43/306 (14%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct: 246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE-----QFGGNPFASLV 300

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
                          +T++ E +  S   N +PLPNPW    +  +  ++  +S++G   
Sbjct: 301 S--------------NTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTT 346

Query: 181 PQTPAGIAGLS----------------SPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQS 223
             T +G +G S                +PG + +   + +   L Q ML  P +  MMQS
Sbjct: 347 GSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query: 224 LLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-------QNPEFLRQLTNPETMQQMVTL 276
           L  NP    Q++  NP          Q+R+ +       QNP+ L  ++NP  MQ ++ +
Sbjct: 407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query: 277 QQFLLT 282
           QQ L T
Sbjct: 467 QQGLQT 472

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors (By similarity). Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Pongo abelii (taxid: 9601)

>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2

 Score =  174 bits (441), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 168/306 (54%), Gaps = 43/306 (14%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct: 246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE-----QFGGNPFASLV 300

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
                          +T++ E +  S   N +PLPNPW    +  +  ++  +S++G   
Sbjct: 301 S--------------NTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTT 346

Query: 181 PQTPAGIAGLS----------------SPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQS 223
             T +G +G S                +PG + +   + +   L Q ML  P +  MMQS
Sbjct: 347 GSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query: 224 LLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-------QNPEFLRQLTNPETMQQMVTL 276
           L  NP    Q++  NP          Q+R+ +       QNP+ L  ++NP  MQ ++ +
Sbjct: 407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query: 277 QQFLLT 282
           QQ L T
Sbjct: 467 QQGLQT 472

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors (By similarity). Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Homo sapiens (taxid: 9606)

>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 166/309 (53%), Gaps = 46/309 (14%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 177 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 236

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+
Sbjct: 237 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFASLV 291

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPW-------------------MAA 161
            +              ++++E T  S   N +PLPNPW                     +
Sbjct: 292 SS--------------SSSAEGTQPSRTENRDPLPNPWAPQTSQSSPASGTTGSTTNTMS 337

Query: 162 GTGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQM 220
            +GG  T+T    S         AG +  ++PG + +   + +   L Q ML  P +  M
Sbjct: 338 TSGGTATSTPAGQSTSGPSLVPGAGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSM 397

Query: 221 MQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-------QNPEFLRQLTNPETMQQM 273
           +QSL  NP    Q++  NP          Q+R+ +       QNP+ L  ++NP  MQ +
Sbjct: 398 LQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQAL 457

Query: 274 VTLQQFLLT 282
           + +QQ L T
Sbjct: 458 LQIQQGLQT 466

Links CD47 to the cytoskeleton. Promotes the surface expression of GABA-A receptors. Promotes the accumulation of uncleaved PSEN1 and PSEN2 by stimulating their biosynthesis. Has no effect on PSEN1 and PSEN2 degradation.

Mus musculus (taxid: 10090)

>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 169/306 (55%), Gaps = 47/306 (15%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           + +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP
Sbjct: 191 LSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNP 250

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEP-FLNATSMAGNAGNDNSNPFAAL 119
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP F  A    GN      NPF++L
Sbjct: 251 AMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFTAAREQFGN------NPFSSL 304

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPW---------------MAAGTG 164
            G      +   S+ P  T           N  PLPNPW                  G+G
Sbjct: 305 AGN-----SDNSSSQPLRTE----------NREPLPNPWSPSPPTSQAPGSGGEGTGGSG 349

Query: 165 GAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQS 223
            +Q + T S+  G       +G+   +SP  + +   + +   L Q ++  P +  MMQ+
Sbjct: 350 TSQVHPTVSNPFGINAASLGSGM--FNSPEMQALLQQISENPQLMQNVISAPYMRTMMQT 407

Query: 224 LLSNPQYMNQ------ILGLNPQLRSMVDSNSQL-REMIQNPEFLRQLTNPETMQQMVTL 276
           L  NP +  Q      +   NPQL+  +     +  + +QNPE L  LTNP  MQ ++ +
Sbjct: 408 LAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQI 467

Query: 277 QQFLLT 282
           QQ L T
Sbjct: 468 QQGLQT 473

Plays a role in the regulation of proteasomal protein degradation. Depending on the case, may promote or inhibit proteasomal protein degradation.

Mus musculus (taxid: 10090)

>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 170/308 (55%), Gaps = 51/308 (16%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           + +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP
Sbjct: 196 LSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNP 255

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEP-FLNATSMAGNAGNDNSNPFAAL 119
            +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP F  A    GN      NPF++L
Sbjct: 256 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGN------NPFSSL 309

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSP--APNTNPLPNPW---------------MAAG 162
            G                  S+S++  P    N  PLPNPW                  G
Sbjct: 310 AG-----------------NSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGG 352

Query: 163 TGGAQTNTTRSSSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMM 221
           +G +Q + T S+  G       +G+   +SP  + +   + +   L Q ++  P +  MM
Sbjct: 353 SGTSQVHPTVSNPFGINAASLGSGM--FNSPEMQALLQQISENPQLMQNVISAPYMRSMM 410

Query: 222 QSLLSNPQYMNQ------ILGLNPQLRSMVDSNSQL-REMIQNPEFLRQLTNPETMQQMV 274
           Q+L  NP +  Q      +   NPQL+  +     +  + +QNPE L  LTNP  MQ ++
Sbjct: 411 QTLAQNPDFAAQMMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALL 470

Query: 275 TLQQFLLT 282
            +QQ L T
Sbjct: 471 QIQQGLQT 478

Plays a role in the regulation of proteasomal protein degradation. Depending on the case, may promote or inhibit proteasomal protein degradation.

Homo sapiens (taxid: 9606)

>sp|Q9NIF3|UBQL_DICDI Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 100/159 (62%), Gaps = 26/159 (16%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           ++E+ N  ++ +L++NP+I R+++M NP+MRE+++ NPE+A +L+DP  LRQ+LE  RNP
Sbjct: 113 IQEMFNSRMMDSLLDNPDIFRDMMMGNPEMREVLNNNPEMAQMLSDPRQLRQSLEMMRNP 172

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATS-MAGNAGNDNSNPFAAL 119
           ELMREMMRN DRAM NIE+ PEGFN+LRRMY  +QEP +NA +  A +    NSNP    
Sbjct: 173 ELMREMMRNADRAMINIENHPEGFNLLRRMYTDIQEPLMNAANQQAASQNQTNSNPI--- 229

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPW 158
                                  T     PN+ PLPNPW
Sbjct: 230 ----------------------QTNTDANPNSQPLPNPW 246

Stable protein which acts as an antagonist of nosA by repressing cellular differentiation after the tight-aggregate stage, when cells differentiate into two precursor cell types, prespore and prestalk cells, prior to the formation of fruiting bodies.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=2

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 87/119 (73%), Gaps = 5/119 (4%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 193 MIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNP 252

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAAL 119
            +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA +
Sbjct: 253 AMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFATV 306

Increases the half-life of proteins destined to be degraded by the proteasome; may modulate proteasome-mediated protein degradation (By similarity). Links CD47 to vimentin-containing intermediate filaments of the cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 5/117 (4%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct: 182 MIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNP 241

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFA 117
            +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA
Sbjct: 242 AMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFA 293

Increases the half-life of proteins destined to be degraded by the proteasome; may modulate proteasome-mediated protein degradation.

Homo sapiens (taxid: 9606)

>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 19/158 (12%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           + ++++ P +Q L++N  ++R L+++NP M+ +I +NPE+ HILN+P  +RQT+E  RNP
Sbjct: 168 VAQLVDDPFIQGLLSNTGLVRQLVLDNPHMQHLIQQNPEIGHILNNPEIMRQTMEFLRNP 227

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
            +M+EMMR+ DRA+SN+ES P G+N+LR MY  + +P LNA            NPF    
Sbjct: 228 SMMQEMMRSQDRALSNLESIPGGYNVLRTMYTDIMDPMLNAVQE-----QFGGNPFVTAT 282

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPW 158
                  + +    PS T           N +PLPNPW
Sbjct: 283 TASTTTTSSQ----PSRTE----------NCDPLPNPW 306

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
255561391	548	plant ubiquilin, putative [Ricinus commu	0.969	0.514	0.814	1e-133
224081475	549	predicted protein [Populus trichocarpa]	0.986	0.522	0.789	1e-116
449456869	556	PREDICTED: ubiquilin-1-like [Cucumis sat	0.979	0.512	0.762	1e-109
359474971	558	PREDICTED: ubiquilin-1-like [Vitis vinif	0.989	0.516	0.754	1e-108
224131864	567	predicted protein [Populus trichocarpa]	0.993	0.509	0.728	1e-107
147822388	566	hypothetical protein VITISV_002886 [Viti	0.989	0.508	0.750	1e-107
449454281	551	PREDICTED: ubiquilin-2-like isoform 1 [C	0.993	0.524	0.736	1e-105
449454283	546	PREDICTED: ubiquilin-2-like isoform 2 [C	0.975	0.520	0.729	1e-104
356501749	545	PREDICTED: ubiquilin-1-like [Glycine max	0.975	0.521	0.682	1e-104
449533875	380	PREDICTED: ubiquilin-1-like, partial [Cu	0.989	0.757	0.725	1e-104

>gi|255561391|ref|XP_002521706.1| plant ubiquilin, putative [Ricinus communis] gi|223539097|gb|EEF40693.1| plant ubiquilin, putative [Ricinus communis]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/291 (81%), Positives = 259/291 (89%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMN PVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP
Sbjct: 170 MREIMNTPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 229

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNAT+MAGN G D++NPFAALL
Sbjct: 230 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGNTGGDSANPFAALL 289

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
           G Q GNQA + + NPS  +SESTTGSPAPNTNPLPNPW A GTGGA  NT RSS+ GDAR
Sbjct: 290 GNQAGNQASDATTNPSIASSESTTGSPAPNTNPLPNPWTATGTGGALNNTARSSNTGDAR 349

Query: 181 PQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQ 240
           PQTP G+ GL  P F+ +FGAM D+N ++QMLQNPA++QMMQSLLSNPQYMNQ+LG NPQ
Sbjct: 350 PQTPVGLGGLGLPEFDSMFGAMPDSNVMSQMLQNPAISQMMQSLLSNPQYMNQMLGSNPQ 409

Query: 241 LRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ 291
            RSM+DSNSQ REM+QNPEFLRQLT+PETMQQ++T QQ LL+Q GR QS Q
Sbjct: 410 FRSMLDSNSQFREMMQNPEFLRQLTSPETMQQLLTFQQALLSQFGRQQSNQ 460

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081475|ref|XP_002306425.1| predicted protein [Populus trichocarpa] gi|222855874|gb|EEE93421.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/290 (78%), Positives = 260/290 (89%), Gaps = 3/290 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MR+IMN PVVQNLMNNPEIMRNL+MNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP
Sbjct: 174 MRDIMNTPVVQNLMNNPEIMRNLLMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 233

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNAT+MAGNAG D++NPFAALL
Sbjct: 234 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGNAGGDSANPFAALL 293

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
           GTQ GNQAR+GS N STT+SE+TTGSPAPNTNPLPNPW    +GGAQTNTTRS+   D R
Sbjct: 294 GTQTGNQARDGSTNLSTTSSETTTGSPAPNTNPLPNPW---SSGGAQTNTTRSNPTSDTR 350

Query: 181 PQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQ 240
           PQ P G+ GL  P  +++F AM D   ++Q++QNPA++QMMQS +S+PQYMNQILG+NPQ
Sbjct: 351 PQAPTGLGGLGLPDLDNMFSAMPDAAMVSQLMQNPAISQMMQSFMSSPQYMNQILGMNPQ 410

Query: 241 LRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQST 290
           LRSM+DSN QLREM+QNPEFLRQLT+PETMQQ++T QQ L++QLG+ QST
Sbjct: 411 LRSMLDSNPQLREMMQNPEFLRQLTSPETMQQLLTFQQSLMSQLGQRQST 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456869|ref|XP_004146171.1| PREDICTED: ubiquilin-1-like [Cucumis sativus] gi|449495107|ref|XP_004159736.1| PREDICTED: ubiquilin-1-like [Cucumis sativus]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/286 (76%), Positives = 248/286 (86%), Gaps = 1/286 (0%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QN+MNNP+IMRNLIMNNPQMREI+DRNPELAHILNDPSTLRQTLE ARNP
Sbjct: 180 MREIMNMPAIQNIMNNPDIMRNLIMNNPQMREIMDRNPELAHILNDPSTLRQTLETARNP 239

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNAT+M+GNAGND SNPFAALL
Sbjct: 240 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMSGNAGNDGSNPFAALL 299

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDAR 180
           GT GGN     + N STTTS++T GSP+PNTNPLPNPW  A TGG QTN+TRS+   +A 
Sbjct: 300 GT-GGNVTNNATTNTSTTTSDTTNGSPSPNTNPLPNPWSPASTGGTQTNSTRSNPTPNAS 358

Query: 181 PQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQ 240
            Q P G+AGL  P  E + GA  D   LNQ++QNPA++QMMQS++SNPQY+NQILGLNPQ
Sbjct: 359 AQVPTGLAGLGLPNLEGMLGATPDAAGLNQLMQNPAISQMMQSVMSNPQYVNQILGLNPQ 418

Query: 241 LRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGR 286
           LR ++DSN QLREM+Q+PEFLRQLT+P+TMQQM T+QQ LL+QLGR
Sbjct: 419 LRGLLDSNPQLREMMQDPEFLRQLTSPDTMQQMFTMQQQLLSQLGR 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474971|ref|XP_002282473.2| PREDICTED: ubiquilin-1-like [Vitis vinifera]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/293 (75%), Positives = 244/293 (83%), Gaps = 5/293 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR+LIMNNPQMREIIDRNPELAHILND   LRQTLEAARNP
Sbjct: 180 MREIMNMPAIQNLMNNPDLMRSLIMNNPQMREIIDRNPELAHILNDTGILRQTLEAARNP 239

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+M+G++GN   SNPFAAL
Sbjct: 240 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMSGDSGNTLGSNPFAAL 299

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQT-NTTRSSSLGD 178
           LG QGG QAR+GSNNPSTT +E+T G  APNTNPLPNPW A   GGAQT NT RS   GD
Sbjct: 300 LGNQGGAQARDGSNNPSTTGAEATAGLTAPNTNPLPNPWSA---GGAQTNNTARSIPAGD 356

Query: 179 ARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLN 238
           AR  + AG+ GL  P  E +   M D    NQ+LQNPAV+QMMQSLLSNPQYMNQIL  N
Sbjct: 357 ARAPSVAGLGGLGLPEMERMLNGMPDATLFNQLLQNPAVSQMMQSLLSNPQYMNQILNFN 416

Query: 239 PQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ 291
           PQLR M+D N QLRE++QNPE LRQLT+PETMQQM++LQQ LL+QL R QSTQ
Sbjct: 417 PQLRGMLDMNPQLREIMQNPELLRQLTSPETMQQMMSLQQSLLSQLNRQQSTQ 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131864|ref|XP_002328127.1| predicted protein [Populus trichocarpa] gi|222837642|gb|EEE76007.1| predicted protein [Populus trichocarpa]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/295 (72%), Positives = 245/295 (83%), Gaps = 6/295 (2%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMN P +Q+LMNNPE++R+L+M+NPQMREI+DRNPELAH+LNDPS LRQTLEAARNP
Sbjct: 187 MREIMNTPAMQSLMNNPELIRSLMMSNPQMREIMDRNPELAHVLNDPSILRQTLEAARNP 246

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMR+TDRAMSNIES+PEGFNMLRRMYE VQEPFLNAT+M GNAG+D  SNPFAAL
Sbjct: 247 ELMREMMRHTDRAMSNIESTPEGFNMLRRMYENVQEPFLNATTMGGNAGSDLGSNPFAAL 306

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTN-TTRSSSLGD 178
           LG QGG Q R+ SNNPSTT SE+T G  APNTNPLPNPW  A  GG QTN TTR +  G+
Sbjct: 307 LGNQGGTQVRDASNNPSTTGSEATGGLTAPNTNPLPNPWNNAA-GGTQTNSTTRPNPAGN 365

Query: 179 ARPQ--TPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILG 236
            R       G+ GL  PG E +F  M D+N +NQ+LQNPAV+QMMQ++LSNP+YMNQ+L 
Sbjct: 366 VRASGLGDLGLGGLGLPGMESMFNGMPDSNQMNQLLQNPAVSQMMQTVLSNPEYMNQMLN 425

Query: 237 LNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ 291
            NPQLRSMVDSN QLREM+QNPE LRQLT+PETMQQM+ LQQ LL QL R QSTQ
Sbjct: 426 FNPQLRSMVDSNPQLREMMQNPELLRQLTSPETMQQMLALQQSLLPQL-RQQSTQ 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822388|emb|CAN59899.1| hypothetical protein VITISV_002886 [Vitis vinifera]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/293 (75%), Positives = 243/293 (82%), Gaps = 5/293 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR+LIMNNPQMREIIDRNPELAHILND   LRQTLEAARNP
Sbjct: 188 MREIMNMPAIQNLMNNPDLMRSLIMNNPQMREIIDRNPELAHILNDTGILRQTLEAARNP 247

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+M+G++GN   SNPFAAL
Sbjct: 248 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMSGDSGNTLGSNPFAAL 307

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQT-NTTRSSSLGD 178
           LG QGG QAR+GSNNPSTT +E+T G  APNTNPLPNPW A   GGAQT NT RS   GD
Sbjct: 308 LGNQGGAQARDGSNNPSTTGAEATAGLTAPNTNPLPNPWSA---GGAQTNNTARSIPAGD 364

Query: 179 ARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLN 238
           AR  + AG+  L  P  E +   M D    NQ+LQNPAV+QMMQSLLSNPQYMNQIL  N
Sbjct: 365 ARAPSVAGLGRLGLPEMERMLNGMPDATLFNQLLQNPAVSQMMQSLLSNPQYMNQILNFN 424

Query: 239 PQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ 291
           PQLR M+D N QLRE++QNPE LRQLT+PETMQQM++LQQ LL+QL R QSTQ
Sbjct: 425 PQLRGMLDMNPQLREIMQNPELLRQLTSPETMQQMMSLQQSLLSQLNRQQSTQ 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454281|ref|XP_004144884.1| PREDICTED: ubiquilin-2-like isoform 1 [Cucumis sativus] gi|449473217|ref|XP_004153820.1| PREDICTED: ubiquilin-2-like isoform 1 [Cucumis sativus]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/292 (73%), Positives = 238/292 (81%), Gaps = 3/292 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR LIM+NPQMR+IIDRNPELAHILNDP  LRQTLEAARNP
Sbjct: 174 MREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNP 233

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+MAGNAGND +SNPFAAL
Sbjct: 234 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSSNPFAAL 293

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDA 179
           L  QGG QAR  SNN STT SE TTG+ APNTNPLPNPW    +GG QT TT+ +  GD 
Sbjct: 294 LANQGGAQARNESNN-STTGSE-TTGNAAPNTNPLPNPWGNNASGGTQTTTTQPTPAGDT 351

Query: 180 RPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNP 239
           R     G+ G      +   GA+ D   LNQ LQNPA++QMMQSLLSNPQYMNQIL LNP
Sbjct: 352 RAPGIGGLGGAGRTNMDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNP 411

Query: 240 QLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ 291
           QLRSMVD N QLREM+QNPEF+RQLTNPE MQQM+++QQ LL+ L R  S+Q
Sbjct: 412 QLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSTLNRQPSSQ 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454283|ref|XP_004144885.1| PREDICTED: ubiquilin-2-like isoform 2 [Cucumis sativus] gi|449473220|ref|XP_004153821.1| PREDICTED: ubiquilin-2-like isoform 2 [Cucumis sativus]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/292 (72%), Positives = 235/292 (80%), Gaps = 8/292 (2%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR LIM+NPQMR+IIDRNPELAHILNDP  LRQTLEAARNP
Sbjct: 174 MREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNP 233

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+MAGNAGND +SNPFAAL
Sbjct: 234 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSSNPFAAL 293

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDA 179
           L  QGG QAR  SNN STT SE TTG+ APNTNPLPNPW        QT TT+ +  GD 
Sbjct: 294 LANQGGAQARNESNN-STTGSE-TTGNAAPNTNPLPNPWGG-----TQTTTTQPTPAGDT 346

Query: 180 RPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNP 239
           R     G+ G      +   GA+ D   LNQ LQNPA++QMMQSLLSNPQYMNQIL LNP
Sbjct: 347 RAPGIGGLGGAGRTNMDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNP 406

Query: 240 QLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSTQ 291
           QLRSMVD N QLREM+QNPEF+RQLTNPE MQQM+++QQ LL+ L R  S+Q
Sbjct: 407 QLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSTLNRQPSSQ 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501749|ref|XP_003519686.1| PREDICTED: ubiquilin-1-like [Glycine max]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/293 (68%), Positives = 238/293 (81%), Gaps = 9/293 (3%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           +REIMN P +QNL+NNPEI+RNLIMNNPQM+E++DRNPELAHILNDPSTLRQTLEA RNP
Sbjct: 170 VREIMNSPTMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNP 229

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
           E+MREMMRNTDRAMSNIESSPEGFNMLRRMYE +QEPFLNAT+MAGN GN+N    AA+ 
Sbjct: 230 EIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNN----AAVS 285

Query: 121 GTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLG-DA 179
           GT GG  AR+ S NPSTT+SE+T GSP PNTNPLPNPW + GTGGAQ N+ RS + G DA
Sbjct: 286 GTHGG-HARDPSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNSRRSLTTGVDA 344

Query: 180 RPQTPAGIAGLSSPGFEDIFG--AMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGL 237
           R Q P G+ G   P  E + G  AM D   L Q++QNPA++QMMQS+LSNPQ +NQILG 
Sbjct: 345 RQQGPTGLGGHGLPDLESMLGGSAMPDPALLTQLMQNPAISQMMQSMLSNPQTLNQILGA 404

Query: 238 NPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQST 290
           N + R M D NS LRE++QNPEFLR  ++PET+QQ+++ QQ L++QLG+ QST
Sbjct: 405 NTEQRGMPDLNS-LREVMQNPEFLRLFSSPETLQQLLSFQQTLMSQLGQQQST 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533875|ref|XP_004173896.1| PREDICTED: ubiquilin-1-like, partial [Cucumis sativus]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/291 (72%), Positives = 235/291 (80%), Gaps = 3/291 (1%)

Query: 1   MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
           MREIMNMP +QNLMNNP++MR LIM+NPQMR+IIDRNPELAHILNDP  LRQTLEAARNP
Sbjct: 92  MREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNP 151

Query: 61  ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
           ELMREMMRNTDRAMSNIESSPEGFNMLRRMYE VQEPFLNAT+MAGNAGND +SNPFAAL
Sbjct: 152 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSSNPFAAL 211

Query: 120 LGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAAGTGGAQTNTTRSSSLGDA 179
           L  QGG QAR  SNN  +TT   TTG+ APNTNPLPNPW    +GG QT TT+ +  GD 
Sbjct: 212 LANQGGAQARNESNN--STTGSETTGNAAPNTNPLPNPWGNNASGGTQTTTTQPTPAGDT 269

Query: 180 RPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNP 239
           R     G+ G      +   GA+ D   LNQ LQNPA++QMMQSLLSNPQYMNQIL LNP
Sbjct: 270 RAPGIGGLGGAGRTNMDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNP 329

Query: 240 QLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQST 290
           QLRSMVD N QLREM+QNPEF+RQLTNPE MQQM+++QQ LL+ L R  S+
Sbjct: 330 QLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSTLNRQPSS 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2059682	551	DSK2 "AT2G17200" [Arabidopsis	0.948	0.500	0.610	5.3e-88
TAIR|locus:2059677	538	DSK2a "AT2G17190" [Arabidopsis	0.951	0.514	0.609	2.9e-87
UNIPROTKB|Q95M59	595	UBQLN1 "Uncharacterized protei	0.914	0.447	0.389	5e-44
UNIPROTKB|Q9UMX0	589	UBQLN1 "Ubiquilin-1" [Homo sap	0.914	0.451	0.382	1e-43
UNIPROTKB|H9L0E0	559	UBQLN4 "Uncharacterized protei	0.900	0.468	0.363	2.8e-43
UNIPROTKB|H9L0E1	561	UBQLN4 "Uncharacterized protei	0.900	0.467	0.363	2.8e-43
UNIPROTKB|I3LSM3	589	UBQLN1 "Uncharacterized protei	0.914	0.451	0.379	4.5e-43
MGI|MGI:1860283	638	Ubqln2 "ubiquilin 2" [Mus musc	0.903	0.412	0.367	2.5e-42
MGI|MGI:1860276	582	Ubqln1 "ubiquilin 1" [Mus musc	0.907	0.453	0.386	3.2e-42
UNIPROTKB|E2RTI3	623	UBQLN2 "Uncharacterized protei	0.903	0.422	0.364	6.6e-42

TAIR|locus:2059682 DSK2 "AT2G17200" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 177/290 (61%), Positives = 208/290 (71%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             +R++MN P +QNLMNNPE MR++IMNNPQMRE++DRNPEL H+LNDPS LRQTLEAARNP
Sbjct:   171 IRDMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNP 230

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDN-SNPFAAL 119
             ELMREMMRNTDRAMSNIES PEGFNMLRRMYE VQEP +NAT+M+GNAGN+  SNPFAAL
Sbjct:   231 ELMREMMRNTDRAMSNIESMPEGFNMLRRMYENVQEPLMNATTMSGNAGNNTGSNPFAAL 290

Query:   120 LGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDA 179
             LG QG                        PN NPLPNPW             R++  GDA
Sbjct:   291 LGNQG--VTTQGSDASNNSSTPNAGTGTIPNANPLPNPW--GATGGQTTAPGRTNVGGDA 346

Query:   180 RPQTPAGIAGLSSPG---------FEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQY 230
             R     G+ GL S G          +   GA  D + L+Q+LQNPA++QMMQS+ SNPQY
Sbjct:   347 RSPGLGGLGGLGSLGGLGGLGMLGADSPLGATPDASQLSQLLQNPAISQMMQSVFSNPQY 406

Query:   231 MNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFL 280
             MNQ++ LNPQLRSM+DSN QLREM+QNP+FLRQ ++PE MQQM+TLQQ L
Sbjct:   407 MNQLMSLNPQLRSMLDSNPQLREMMQNPDFLRQFSSPEMMQQMMTLQQSL 456

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2059677 DSK2a "AT2G17190" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 173/284 (60%), Positives = 206/284 (72%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             +RE+MN P +QNLMNNPE MR++IMNNPQMRE++DRNPEL H+LNDPS LRQTLEAARNP
Sbjct:   166 IREMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNP 225

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGND-NSNPFAAL 119
             ELMREMMRNTDRAMSNIES PEGFNMLRRMYE VQEP +NAT+M+ NAGN+ +SNPFAAL
Sbjct:   226 ELMREMMRNTDRAMSNIESMPEGFNMLRRMYENVQEPLMNATTMSENAGNNTSSNPFAAL 285

Query:   120 LGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDA 179
             LG QG                        PN NPLPNPW              ++ LG  
Sbjct:   286 LGNQG---VTTQGSDTSNNISAPNAETGTPNANPLPNPW-GATAGQTTAPGRTNAGLGGL 341

Query:   180 RPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNP 239
                   G+ GL   G +   GA  D + L+Q+LQNPA++QMMQS+LSNPQYMNQ++ LNP
Sbjct:   342 GGL--GGLGGLGMLGADSPLGATPDASQLSQILQNPAMSQMMQSVLSNPQYMNQLMSLNP 399

Query:   240 QLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQ 283
             QLRSM+D N QLREM+QNP+FLRQ ++PE MQQM++LQQ L +Q
Sbjct:   400 QLRSMLDMNPQLREMMQNPDFLRQFSSPEMMQQMMSLQQSLFSQ 443

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q95M59 UBQLN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 118/303 (38%), Positives = 164/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct:   246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE-----QFGGNPFASLV 300

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
                   +                      N +PLPNPW              +SS+G   
Sbjct:   301 SNTSSGEG--------------SQPSRTENRDPLPNPWAPQASQSSSASSGTTSSVGGTS 346

Query:   181 PQTPAGIAGLSS--PGFEDIFGA-MQDTNSLNQMLQNPAVT-QMMQSLLSNP--QYMNQI 234
                  G AG SS  P      GA M +T  +  +LQ      Q+MQ++LS P  + M Q 
Sbjct:   347 GSAAGGTAGQSSAAPNLGPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query:   235 LGLNPQLRS--MVDS-----NSQLREMI--QNPEFLRQLTNPETMQQMVT---LQQFLLT 282
             L  NP L +  M+++     N QL+E +  Q P FL+Q+ NP+T+  M     +Q  L  
Sbjct:   407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query:   283 QLG 285
             Q G
Sbjct:   467 QQG 469

GO:0043234 "protein complex" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

UNIPROTKB|Q9UMX0 UBQLN1 "Ubiquilin-1" [Homo sapiens (taxid:9606)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 116/303 (38%), Positives = 166/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct:   246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE-----QFGGNPFASLV 300

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
                   +                      N +PLPNPW              +S++G   
Sbjct:   301 SNTSSGEG--------------SQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTT 346

Query:   181 PQTPAGIAGLSS--PGFEDIFGA-MQDTNSLNQMLQNPAVT-QMMQSLLSNP--QYMNQI 234
               T +G +G S+  P      GA M +T  +  +LQ      Q+MQ++LS P  + M Q 
Sbjct:   347 GSTASGTSGQSTTAPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query:   235 LGLNPQLRS--MVDS-----NSQLREMI--QNPEFLRQLTNPETMQQMVT---LQQFLLT 282
             L  NP L +  M+++     N QL+E +  Q P FL+Q+ NP+T+  M     +Q  L  
Sbjct:   407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query:   283 QLG 285
             Q G
Sbjct:   467 QQG 469

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IMP;IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0031396 "regulation of protein ubiquitination" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|H9L0E0 UBQLN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 110/303 (36%), Positives = 165/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             + +IM  P+VQN+M+NP++MR +IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP
Sbjct:   157 LSQIMENPLVQNMMSNPDLMRQMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNP 216

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP  +A       GN   NPF++L 
Sbjct:   217 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAARE--QFGN---NPFSSLT 271

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
             G    + ++                    N  PLPNPW                S G   
Sbjct:   272 GNSESSSSQPLRTE---------------NREPLPNPWSPSPPASQSQAPSSEGSTGSGS 316

Query:   181 PQTPAGIA---GLSSPGF-------EDIFGAMQDTNSLNQMLQN----PAVTQMMQSLLS 226
              Q+   ++   GL++  F        ++ G +Q  +   Q++QN    P +  MMQ+L  
Sbjct:   317 TQSTPTVSNPFGLNAASFGAGMFNSPEMQGLLQQISENPQLMQNMISAPYMRSMMQTLAQ 376

Query:   227 NPQYMNQIL------GLNPQLRSMVDSNSQL-REMIQNPEFLRQLTNPETMQQMVTLQQF 279
             NP +  QI+        NPQL+  +     +  + +QNP+ L  LTNP  MQ ++ +QQ 
Sbjct:   377 NPDFAAQIMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPDSLSILTNPRAMQALLQIQQG 436

Query:   280 LLT 282
             L T
Sbjct:   437 LQT 439

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031595 "nuclear proteasome complex" evidence=IEA

GO:0031597 "cytosolic proteasome complex" evidence=IEA

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|H9L0E1 UBQLN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 110/303 (36%), Positives = 165/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             + +IM  P+VQN+M+NP++MR +IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP
Sbjct:   159 LSQIMENPLVQNMMSNPDLMRQMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNP 218

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP  +A       GN   NPF++L 
Sbjct:   219 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAARE--QFGN---NPFSSLT 273

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
             G    + ++                    N  PLPNPW                S G   
Sbjct:   274 GNSESSSSQPLRTE---------------NREPLPNPWSPSPPASQSQAPSSEGSTGSGS 318

Query:   181 PQTPAGIA---GLSSPGF-------EDIFGAMQDTNSLNQMLQN----PAVTQMMQSLLS 226
              Q+   ++   GL++  F        ++ G +Q  +   Q++QN    P +  MMQ+L  
Sbjct:   319 TQSTPTVSNPFGLNAASFGAGMFNSPEMQGLLQQISENPQLMQNMISAPYMRSMMQTLAQ 378

Query:   227 NPQYMNQIL------GLNPQLRSMVDSNSQL-REMIQNPEFLRQLTNPETMQQMVTLQQF 279
             NP +  QI+        NPQL+  +     +  + +QNP+ L  LTNP  MQ ++ +QQ 
Sbjct:   379 NPDFAAQIMVNVPLFAGNPQLQEQLRLQLPVFLQQMQNPDSLSILTNPRAMQALLQIQQG 438

Query:   280 LLT 282
             L T
Sbjct:   439 LQT 441

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031595 "nuclear proteasome complex" evidence=IEA

GO:0031597 "cytosolic proteasome complex" evidence=IEA

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|I3LSM3 UBQLN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 115/303 (37%), Positives = 164/303 (54%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   186 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 245

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+
Sbjct:   246 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQE-----QFGGNPFASLV 300

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
                   +                      N +PLPNPW              +S++G   
Sbjct:   301 SNTSSGEG--------------SQPSRTENRDPLPNPWAPQASQSSSASSGTTSAVGGTS 346

Query:   181 PQTPAGIAGLSS--PGFEDIFGA-MQDTNSLNQMLQNPAVT-QMMQSLLSNP--QYMNQI 234
                 +G  G +S  P      GA M +T  +  +LQ      Q+MQ++LS P  + M Q 
Sbjct:   347 GSAASGTTGQNSTAPNLGPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQS 406

Query:   235 LGLNPQLRS--MVDS-----NSQLREMI--QNPEFLRQLTNPETMQQMVT---LQQFLLT 282
             L  NP L +  M+++     N QL+E +  Q P FL+Q+ NP+T+  M     +Q  L  
Sbjct:   407 LSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQI 466

Query:   283 QLG 285
             Q G
Sbjct:   467 QQG 469

GO:0043234 "protein complex" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IEA

GO:0019900 "kinase binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

MGI|MGI:1860283 Ubqln2 "ubiquilin 2" [Mus musculus (taxid:10090)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 112/305 (36%), Positives = 156/305 (51%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   193 MIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNP 252

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA   
Sbjct:   253 AMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQE-----QFGGNPFA--- 304

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW------MXXXXXXXXXXXXRSS 174
              T G +                       N +PLPNPW                     S
Sbjct:   305 -TVGSSST----------SGEGTQPSRTENRDPLPNPWAPPPTTQTAATTTTTTTTSSGS 353

Query:   175 SLGDARPQTPAG--------IAGL-SSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQSL 224
               G +   T AG        +A + S+PG + +   + +   L Q ML  P +  MMQSL
Sbjct:   354 GSGSSSSSTTAGNTMAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSL 413

Query:   225 LSNPQYMNQILGLNPQLRSMVDSNSQLR-------EMIQNPEFLRQLTNPETMQQMVTLQ 277
               NP    Q++  +P   S      Q+R       + +QNPE +  ++NP  MQ ++ +Q
Sbjct:   414 SQNPDMAAQMMLSSPLFTSNPQLQEQMRPQLPNFLQQMQNPETIAAMSNPRAMQALMQIQ 473

Query:   278 QFLLT 282
             Q L T
Sbjct:   474 QGLQT 478

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1860276 Ubqln1 "ubiquilin 1" [Mus musculus (taxid:10090)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 119/308 (38%), Positives = 163/308 (52%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   177 MVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNP 236

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+
Sbjct:   237 AMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQE-----QFGGNPFASLV 291

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSL---- 176
              +    +                      N +PLPNPW               S+     
Sbjct:   292 SSSSSAEG--------------TQPSRTENRDPLPNPWAPQTSQSSPASGTTGSTTNTMS 337

Query:   177 --GDARPQTPAGIAGLSSPGFEDIFGA-MQDTNSLNQMLQNPAVT-QMMQSLLSNPQYMN 232
               G     TPAG    S P      GA M +T  +  +LQ      Q+MQ++LS P YM 
Sbjct:   338 TSGGTATSTPAG-QSTSGPSLVPGAGASMFNTPGMQSLLQQITENPQLMQNMLSAP-YMR 395

Query:   233 ---QILGLNPQLRS--MVDS-----NSQLREMI--QNPEFLRQLTNPETMQQMVT---LQ 277
                Q L  NP L +  M+++     N QL+E +  Q P FL+Q+ NP+T+  M     +Q
Sbjct:   396 SMLQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQ 455

Query:   278 QFLLTQLG 285
               L  Q G
Sbjct:   456 ALLQIQQG 463

GO:0000502 "proteasome complex" evidence=IEA

GO:0001666 "response to hypoxia" evidence=ISO

GO:0005102 "receptor binding" evidence=NAS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0019215 "intermediate filament binding" evidence=NAS

GO:0019900 "kinase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031396 "regulation of protein ubiquitination" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|E2RTI3 UBQLN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 110/302 (36%), Positives = 157/302 (51%)

Query:     1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNP 60
             M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP
Sbjct:   182 MIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNP 241

Query:    61 ELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALL 120
              +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA++ 
Sbjct:   242 AMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQE-----QFGGNPFASV- 295

Query:   121 GTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDAR 180
                 G+ +                     N +PLPNPW              +SS G   
Sbjct:   296 ----GSSS---------TSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTSSSGSGS 342

Query:   181 PQTPAGIAG------------LSSPGFEDIFGAMQDTNSLNQ-MLQNPAVTQMMQSLLSN 227
               + +   G             S+PG + +   + +   L Q ML  P +  MMQSL  N
Sbjct:   343 GSSSSSATGNTVAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQN 402

Query:   228 P----QYM--NQILGLNPQLRSMVDSN-SQLREMIQNPEFLRQLTNPETMQQMVTLQQFL 280
             P    Q M  + +   NPQL+  +        + +QNP+ L  ++NP  MQ ++ +QQ L
Sbjct:   403 PDLAAQMMLNSPVFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGL 462

Query:   281 LT 282
              T
Sbjct:   463 QT 464

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam13658	96	pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolas	5e-04

>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor binding site

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 207 SLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTN 266
            L+ +L    +  +++S    PQ   ++L   P+   M  +   LREM+++P+F + L  
Sbjct: 2   DLSDVLTPENLEPLLES---PPQVQERLLPHLPEGDLM-RNPEDLREMLRSPQFKQAL-- 55

Query: 267 PETMQQMVTLQQF--LLTQLG 285
             ++ Q +       LL+QLG
Sbjct: 56  -ASLSQALRSGGLPSLLSQLG 75

This domain appears frequently at the C-terminus of Proteasom_Rpn13, pfam04683. It is a proteasome subunit that binds the de-ubiquitinating enzyme, UCH37. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	100.0
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.28
smart00727	41	STI1 Heat shock chaperonin-binding motif.	97.64
smart00727	41	STI1 Heat shock chaperonin-binding motif.	97.37
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	95.4
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	92.78
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	92.22
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	88.94
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	86.68

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=100.00  E-value=3e-48  Score=377.10  Aligned_cols=244  Identities=46%  Similarity=0.774  Sum_probs=191.3

Q ss_pred             ChhhhCCHHHHHhhcCHHHHHHHHhcCHHHHHHHhhChhhhhcCCChHHHHHHHHHhhCHHHHHHHHhhhhhhhhhccCC
Q 022855            1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESS   80 (291)
Q Consensus         1 ~~~mm~nP~~q~lm~NP~~m~~mi~~nP~~~~m~~~nPe~~~~l~nP~~lrq~~~~~~nP~~~qe~mr~~d~a~~~le~~   80 (291)
                      +++||+||+||+||+|||+||++|.+||+|+++|++|||++|+++||+++||++|++|||++++|+||++|++++++|+|
T Consensus       159 ~~~~m~nP~vq~ll~Npd~mrq~I~anPqmq~lm~~npei~h~ln~p~i~rQtle~arNP~m~qemmrn~d~a~Snlesi  238 (493)
T KOG0010|consen  159 LRQMMENPIVQSLLNNPDLMRQLIMANPQMQDLMQRNPEIGHLLNNPLILRQTLESARNPEMMQEMMRNQDRAMSNLESI  238 (493)
T ss_pred             HHHhhhChHHHHHhcChHHHHHHHhcCHHHHHHHhhCCcchhhhcChHHHHHHHHhccCHHHHHHHHhhccccccChhcC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHhhhhccchhhhhhhcccCCCCCCCCCchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 022855           81 PEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMA  160 (291)
Q Consensus        81 PgG~n~l~~~~~d~q~p~~na~~~~~~~~~~~~npfa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~pLpNPw~~  160 (291)
                      ||||++||++|+||+|||+|+...     .|++|||++|.+..+....              +++++ ||++|+||||+.
T Consensus       239 PgG~n~l~~my~diqdPm~Na~~~-----~~g~Npfasl~~~~~s~~~--------------~~~~~-eN~~plPn~~~~  298 (493)
T KOG0010|consen  239 PGGYNALRRMYTDIQDPMLNAASE-----QFGGNPFASLPGNQGSGTG--------------GSPSP-ENNSPLPNPWAQ  298 (493)
T ss_pred             ccHHHHHHHHhhhccchhhhhccc-----ccCCCCcccccCccccCCC--------------CCCCc-ccCCCCCCcccC
Confidence            999999999999999999999874     4899999999877765311              11233 899999999985


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCC-CCCCCCCCCCcccccC-CCCChHHHHhccCChHHHHHHHHhhCChHHHHHHhhCC
Q 022855          161 AGTGGAQTNTTRSSSLGDARPQTP-AGIAGLSSPGFEDIFG-AMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLN  238 (291)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~-~g~~g~g~~~~~~~~g-~~~~p~~m~~mm~nP~~~~mmq~l~sNP~l~~qmi~~n  238 (291)
                      +...... ......+.++.+.+.. ...+.++.++..+..+ ...++.++++|++ |++++|++.+.+||.++.+     
T Consensus       299 ~~~~s~~-a~~~~~~t~G~~s~~~~~n~s~~~~~~~~a~lq~i~~n~~~~~~l~s-~~~~~m~~~~s~~P~~a~~-----  371 (493)
T KOG0010|consen  299 ASTTSSP-AANPTPGTSGGTSSNGNSNPSQLGSPGMQAGLQMITENPSLLQQLLS-PYIRSMFQSASQNPLQAAQ-----  371 (493)
T ss_pred             CCCCCCC-CCCCCcCccCccccCCCCCccccCCcchhhhhhccccChhhhhhccc-hhhHHHHhhhccCchhhhc-----
Confidence            3211100 0000000011000000 0000122222222222 2478899999999 9999999999999998866     


Q ss_pred             hhHHHhhhhChHHHHhhCChHHHHhhcCHHHHHHHHHHHHHHHHhh
Q 022855          239 PQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQL  284 (291)
Q Consensus       239 P~l~~m~~~nP~~~~~m~nP~~l~~m~NP~~mqammQiqq~~~~~~  284 (291)
                                  ||+ |+||+++++|+||+++++++||||++....
T Consensus       372 ------------~~~-mq~p~~~~~~~np~a~~ai~qiqq~~~~~~  404 (493)
T KOG0010|consen  372 ------------LRQ-MQNPDVLRAMSNPRAMQAIRQIQQGLQTLA  404 (493)
T ss_pred             ------------ccc-ccCchHhhhhcChHHHHHHHHHHHHHHHHH
Confidence                        335 889999999999999999999999998754

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.28  E-value=1.6e-11  Score=121.01  Aligned_cols=80  Identities=39%  Similarity=0.678  Sum_probs=74.3

Q ss_pred             CCChHHHHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHhhhhChHHHHhhCChHHHHh----hcCHHHHHHHHHHH
Q 022855          202 MQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQ----LTNPETMQQMVTLQ  277 (291)
Q Consensus       202 ~~~p~~m~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~m~~~nP~~~~~m~nP~~l~~----m~NP~~mqammQiq  277 (291)
                      ..+|+++.+||+||.+    |.|++||+||+|+|.+||++++++++||+++|+++||+++|+    .+||+.+|++|+++
T Consensus       153 ~snpe~~~~~m~nP~v----q~ll~Npd~mrq~I~anPqmq~lm~~npei~h~ln~p~i~rQtle~arNP~m~qemmrn~  228 (493)
T KOG0010|consen  153 LSNPEALRQMMENPIV----QSLLNNPDLMRQLIMANPQMQDLMQRNPEIGHLLNNPLILRQTLESARNPEMMQEMMRNQ  228 (493)
T ss_pred             ccCHHHHHHhhhChHH----HHHhcChHHHHHHHhcCHHHHHHHhhCCcchhhhcChHHHHHHHHhccCHHHHHHHHhhc
Confidence            4799999999999987    778899999999999999999999999999999999999998    47999999999999


Q ss_pred             HHHHHhhh
Q 022855          278 QFLLTQLG  285 (291)
Q Consensus       278 q~~~~~~~  285 (291)
                      +...+++.
T Consensus       229 d~a~Snle  236 (493)
T KOG0010|consen  229 DRAMSNLE  236 (493)
T ss_pred             cccccChh
Confidence            98777764

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=97.64  E-value=6.5e-05  Score=50.32  Aligned_cols=36  Identities=39%  Similarity=0.621  Sum_probs=31.7

Q ss_pred             HHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHH
Q 022855          208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRS  243 (291)
Q Consensus       208 m~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~  243 (291)
                      +.++++||+++++++.+++||++++.++.+||++++
T Consensus         4 ~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~   39 (41)
T smart00727        4 MALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQ   39 (41)
T ss_pred             HHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHh
Confidence            456778999999999999999999999877888764

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=97.37  E-value=0.00015  Score=48.61  Aligned_cols=32  Identities=28%  Similarity=0.629  Sum_probs=23.0

Q ss_pred             hhhhCCHHHHHhhc----CHHHHHHHHhcCHHHHHH
Q 022855            2 REIMNMPVVQNLMN----NPEIMRNLIMNNPQMREI   33 (291)
Q Consensus         2 ~~mm~nP~~q~lm~----NP~~m~~mi~~nP~~~~m   33 (291)
                      .++++||.|+++++    ||++++.++++||++++.
T Consensus         5 ~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~   40 (41)
T smart00727        5 ALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQL   40 (41)
T ss_pred             HHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhh
Confidence            46777887777665    888888877667776653

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=95.40  E-value=0.028  Score=41.08  Aligned_cols=40  Identities=33%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             hccCChHHHHHHHHhhCChHHHHHHh----hCChhHHHhhhhCh
Q 022855          210 QMLQNPAVTQMMQSLLSNPQYMNQIL----GLNPQLRSMVDSNS  249 (291)
Q Consensus       210 ~mm~nP~~~~mmq~l~sNP~l~~qmi----~~nP~l~~m~~~nP  249 (291)
                      .+.++|.+.++-+.+.+||+++..++    .+||++.+++.+||
T Consensus         3 ~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~   46 (59)
T PF09280_consen    3 FLRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNP   46 (59)
T ss_dssp             GGTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTH
T ss_pred             HHHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCH
Confidence            46778888887777778886554443    44554444444444

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=92.78  E-value=0.22  Score=36.37  Aligned_cols=37  Identities=35%  Similarity=0.653  Sum_probs=20.8

Q ss_pred             hhhhCCHHHHHh---h-cCHH----HHHHHHhcCHHHHHHHhhCh
Q 022855            2 REIMNMPVVQNL---M-NNPE----IMRNLIMNNPQMREIIDRNP   38 (291)
Q Consensus         2 ~~mm~nP~~q~l---m-~NP~----~m~~mi~~nP~~~~m~~~nP   38 (291)
                      ..+.++|.|+.|   + +||+    ++++|-.+||++.++|.+||
T Consensus         2 ~~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~   46 (59)
T PF09280_consen    2 EFLRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNP   46 (59)
T ss_dssp             GGGTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTH
T ss_pred             hHHHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCH
Confidence            457777876543   2 6764    34444455666666665555

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=92.22  E-value=0.23  Score=48.85  Aligned_cols=49  Identities=27%  Similarity=0.464  Sum_probs=31.6

Q ss_pred             HHhccCChHHHHHHHHhhCChHHHHHHh----hCChhHHHhhhhChH-HHHhhC
Q 022855          208 LNQMLQNPAVTQMMQSLLSNPQYMNQIL----GLNPQLRSMVDSNSQ-LREMIQ  256 (291)
Q Consensus       208 m~~mm~nP~~~~mmq~l~sNP~l~~qmi----~~nP~l~~m~~~nP~-~~~~m~  256 (291)
                      +.-+.++|.|+++-+.+.+||+++..++    ..||++.+++.+||+ |.++|+
T Consensus       248 l~~Lr~~pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~  301 (378)
T TIGR00601       248 LEFLRNQPQFQQLRQVVQQNPQLLPPLLQQIGQENPQLLQQISQHPEQFLQMLN  301 (378)
T ss_pred             HHHhhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHhc
Confidence            5566688888888888888998776665    355555554444442 444443

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=88.94  E-value=0.9  Score=44.74  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             HhhhhChHHHHhhCChHHHHhh--cCHHHHHHHHHHHHHHHHhhh
Q 022855          243 SMVDSNSQLREMIQNPEFLRQL--TNPETMQQMVTLQQFLLTQLG  285 (291)
Q Consensus       243 ~m~~~nP~~~~~m~nP~~l~~m--~NP~~mqammQiqq~~~~~~~  285 (291)
                      +++++||++.+     .+++++  +||+.+|.|.+-+..|...|+
T Consensus       262 ~~vq~NP~~L~-----~lLqql~~~nP~l~q~I~~n~e~Fl~ll~  301 (378)
T TIGR00601       262 QVVQQNPQLLP-----PLLQQIGQENPQLLQQISQHPEQFLQMLN  301 (378)
T ss_pred             HHHHHCHHHHH-----HHHHHHHhhCHHHHHHHHHCHHHHHHHhc
Confidence            33445555553     334443  466666666666666666554

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=86.68  E-value=1.1  Score=43.28  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             HHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHhhhhChHHHHhh
Q 022855          208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI  255 (291)
Q Consensus       208 m~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~m~~~nP~~~~~m  255 (291)
                      +.-+.+.|.|+++.+-+.+||++++-|+      +++-+.||++.+.+
T Consensus       216 l~fLr~~~qf~~lR~~iqqNP~ll~~~L------qqlg~~nP~L~q~I  257 (340)
T KOG0011|consen  216 LEFLRNQPQFQQLRQMIQQNPELLHPLL------QQLGKQNPQLLQLI  257 (340)
T ss_pred             hhhhhccHHHHHHHHHHhhCHHHHHHHH------HHHhhhCHHHHHHH
Confidence            4557788899999888889999886554      44445555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 51/307 (16%), Positives = 101/307 (32%), Gaps = 80/307 (26%)

Query: 2   REIMNMPVVQNLMNNPEIMRNLIMNNPQ--MREIIDRNPELAHILNDPSTLRQT------ 53
           ++I+   V +        + N    + Q   + I+    E+ HI+     +  T      
Sbjct: 19  KDIL--SVFE-----DAFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 54  LEAARN---PELMREMMR-NTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAG 109
           L + +     + + E++R N    MS I++     +M+ RMY   ++             
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---------- 120

Query: 110 NDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPL----PNPWMAA-GTG 164
           NDN   FA        N +R     P     ++           L    P   +   G  
Sbjct: 121 NDNQ-VFAKY------NVSRL---QPYLKLRQA-----------LLELRPAKNVLIDGVL 159

Query: 165 GAQTNTTRSSSLGDARPQT--PAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQ 222
           G+             + Q      I  L+               ++ +MLQ   + Q+  
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLN-------LKNCNSPETVLEMLQK-LLYQIDP 211

Query: 223 SLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEF------LRQLTNPETMQQMVTL 276
           +  S   + +     N +LR +    ++LR ++++  +      L  + N +       L
Sbjct: 212 NWTSRSDHSS-----NIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NL 264

Query: 277 Q-QFLLT 282
             + LLT
Sbjct: 265 SCKILLT 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 3e-09
 Identities = 45/356 (12%), Positives = 100/356 (28%), Gaps = 106/356 (29%)

Query: 1   MREIMNMPVVQNLMNNP-EIMR-----NLIMNNPQ------MREIIDRN-----PELAHI 43
            + I++   + +++ +   +         +++  +      + E++  N       +   
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 44  LNDPSTLRQTLEAARNPELMREMMRNTDRAMS--NIESSPEGFNMLRR-MYETVQEPFLN 100
              PS + +     R+       + N ++  +  N+ S  + +  LR+ + E      + 
Sbjct: 102 QRQPSMMTRMYIEQRDR------LYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVL 154

Query: 101 ATSMAG---------------------------NAGNDNS-----NPFAALLG--TQGGN 126
              + G                           N  N NS          LL        
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 127 QAREGSNNPSTTTSESTTG-----SPAPNTNPL------PNPWMA-AGTGGAQT-NTTRS 173
              + S+N                   P  N L       N     A     +   TTR 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 174 SSLGDARPQTPAGIAGLSSPGFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQ 233
             + D         A  +    +     +      + +L+   +    Q L   P+   +
Sbjct: 275 KQVTDF-----LSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDL---PR---E 321

Query: 234 ILGLNPQLRSMV----------------DSNSQLREMIQNPEFLRQLTNPETMQQM 273
           +L  NP+  S++                 +  +L  +I++   L  L  P   ++M
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVL-EPAEYRKM 374

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens} Length = 411

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 5/226 (2%)

Query: 45  NDPSTLRQTLEAARNPELMREMMRNTDRA--MSNIESSPEGFNMLRRMYETVQEPFLNAT 102
            D    R+  E   NP +   +  +      +S +       ++L  M  +     +   
Sbjct: 120 QDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPA 179

Query: 103 SMAGNAGND-NSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMAA 161
            + G  G    + P  A L    G      S++  + ++  T  S   +T   P P   A
Sbjct: 180 GLGGLGGLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPA 239

Query: 162 GTGGAQTNTTRSSSLGDARPQTPAGIAGLSS--PGFEDIFGAMQDTNSLNQMLQNPAVTQ 219
                  +   SS  G +   +P     LS        +             L +    +
Sbjct: 240 AASATSPSPAPSSGNGASTAASPTQPIQLSDLQSILATMNVPAGPAGGQQVDLASVLTPE 299

Query: 220 MMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLT 265
           +M  +L+N     ++L   P   S+  +  +++  + +P+F + L 
Sbjct: 300 IMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALG 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	97.24
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	96.48
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	96.42
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	95.6
2f4m_B	61	UV excision repair protein RAD23 homolog B; glycop	95.33
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	95.21
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	95.02
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	94.17
2f4m_B	61	UV excision repair protein RAD23 homolog B; glycop	92.61
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	91.37
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	91.29
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	87.78
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	87.74

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=96.48  E-value=0.0042  Score=44.48  Aligned_cols=19  Identities=32%  Similarity=0.497  Sum_probs=9.5

Q ss_pred             hhhCCHHHHHhhcCHHHHH
Q 022855            3 EIMNMPVVQNLMNNPEIMR   21 (291)
Q Consensus         3 ~mm~nP~~q~lm~NP~~m~   21 (291)
                      .+++||.++.+|+||+++.
T Consensus         7 kl~~dPe~~~~m~dP~~~~   25 (62)
T 2lnm_A            7 KIMENPDVAMAFQNPRVQA   25 (62)
T ss_dssp             HHTTSHHHHHHTTSHHHHH
T ss_pred             HHHcChHHHHHcCCHHHHH
Confidence            3445555555555555443

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=95.60  E-value=0.0097  Score=42.55  Aligned_cols=40  Identities=20%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             HHHhhChhhhhcCCChHHHHHHHHHhhCHHHHHHHHhhhh
Q 022855           32 EIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTD   71 (291)
Q Consensus        32 ~m~~~nPe~~~~l~nP~~lrq~~~~~~nP~~~qe~mr~~d   71 (291)
                      +-+.++||+..+|+||++++-+-++.+||+.+++.+.+..
T Consensus         6 ~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~   45 (62)
T 2lnm_A            6 SKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKE   45 (62)
T ss_dssp             HHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHH
T ss_pred             HHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChH
Confidence            3355688888888888888888888888888888776544

>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*

Probab=95.33  E-value=0.016  Score=41.56  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=28.9

Q ss_pred             HhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHhhhhChHHHHhh-CChH-HHHhh
Q 022855          209 NQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-QNPE-FLRQL  264 (291)
Q Consensus       209 ~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~m~~~nP~~~~~m-~nP~-~l~~m  264 (291)
                      .-+.++|.+.++-+.+.+||+++..++      +++-+.||++.+++ +||+ |++++
T Consensus         5 ~~Lr~~Pqf~~lR~~vq~NP~~L~~lL------qql~~~nP~l~~~I~~n~e~Fl~ll   56 (61)
T 2f4m_B            5 EFLRNQPQFQQMRQIIQQNPSLLPALL------QQIGRENPQLLQQISQHQEHFIQML   56 (61)
T ss_dssp             GGGTTCHHHHHHHHHHHHCGGGHHHHH------HHHHHHCHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHHHCHHHHHHHH------HHHHhHCHHHHHHHHHCHHHHHHHH
Confidence            446677888777777777887776554      33444445444443 2443 44443

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=95.21  E-value=0.0087  Score=44.42  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=28.3

Q ss_pred             HhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHhhhhChHHHHhh-CChH-HHHhh
Q 022855          209 NQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-QNPE-FLRQL  264 (291)
Q Consensus       209 ~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~m~~~nP~~~~~m-~nP~-~l~~m  264 (291)
                      .-+.++|.+.++-+.+.+||+++..++      +++-+.||++.+++ +||+ |++++
T Consensus         7 ~~Lr~~Pqf~qlR~~vqqNP~lL~~lL------qqL~~~NPqL~q~I~~n~e~Fl~ll   58 (72)
T 1pve_A            7 EFLRNQPQFQQMRQIIQQNPSLLPALL------QQIGRENPQLLQQISQHQEHFIQML   58 (72)
T ss_dssp             GGGTTCTTTTTHHHHHTTCGGGHHHHH------HHHHTTCHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHHHCHHHHHHHH------HHHHhHCHHHHHHHHHCHHHHHHHH
Confidence            456667777777777777777666554      33444444444443 3444 44444

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=95.02  E-value=0.017  Score=42.58  Aligned_cols=34  Identities=21%  Similarity=0.484  Sum_probs=17.7

Q ss_pred             HhccCChHHHHHHHHhhCChHHHHHHhhCChhHHH
Q 022855          209 NQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRS  243 (291)
Q Consensus       209 ~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~  243 (291)
                      ..+|+||.++.+++.+++||+.+...+ +||.++.
T Consensus        23 ~~im~DP~~~~~lq~~~~NP~~~~k~~-~nP~v~~   56 (71)
T 2llw_A           23 AAIMQDPVMQSILQQAQQNPAALQEHM-KNPEVFK   56 (71)
T ss_dssp             HHHHTCTHHHHHHHHHHHCHHHHHHHH-HSHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHCHHHHHHHH-hCHHHHH
Confidence            345555555555555555555555443 3444443

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=94.17  E-value=0.05  Score=40.07  Aligned_cols=36  Identities=33%  Similarity=0.620  Sum_probs=20.2

Q ss_pred             hChhhhhcCCChHHHHHHHHHhhCHHHHHHHHhhhh
Q 022855           36 RNPELAHILNDPSTLRQTLEAARNPELMREMMRNTD   71 (291)
Q Consensus        36 ~nPe~~~~l~nP~~lrq~~~~~~nP~~~qe~mr~~d   71 (291)
                      +.||+..+|+||+++.-+-++.+||+.+++.+.+.+
T Consensus        18 ~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~   53 (71)
T 2llw_A           18 KDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPE   53 (71)
T ss_dssp             HSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHH
T ss_pred             cCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHH
Confidence            355555555666555555555666666666555443

>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*

Probab=92.61  E-value=0.078  Score=37.99  Aligned_cols=8  Identities=38%  Similarity=0.534  Sum_probs=3.8

Q ss_pred             hhCCHHHH
Q 022855            4 IMNMPVVQ   11 (291)
Q Consensus         4 mm~nP~~q   11 (291)
                      +.++|.|+
T Consensus         7 Lr~~Pqf~   14 (61)
T 2f4m_B            7 LRNQPQFQ   14 (61)
T ss_dssp             GTTCHHHH
T ss_pred             HHcChHHH
Confidence            34555443

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=91.37  E-value=0.25  Score=36.52  Aligned_cols=45  Identities=29%  Similarity=0.492  Sum_probs=27.9

Q ss_pred             hCChhH---HHhhhhChHHHHhhCChHHHHh--hcCHHHHHHHHHHHHHHHHhhh
Q 022855          236 GLNPQL---RSMVDSNSQLREMIQNPEFLRQ--LTNPETMQQMVTLQQFLLTQLG  285 (291)
Q Consensus       236 ~~nP~l---~~m~~~nP~~~~~m~nP~~l~~--m~NP~~mqammQiqq~~~~~~~  285 (291)
                      .++|++   |+++++||++.+     .++..  -+||+.++.+.+-++.+...|.
T Consensus        10 r~~Pqf~qlR~~vqqNP~lL~-----~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~   59 (72)
T 1pve_A           10 RNQPQFQQMRQIIQQNPSLLP-----ALLQQIGRENPQLLQQISQHQEHFIQMLN   59 (72)
T ss_dssp             TTCTTTTTHHHHHTTCGGGHH-----HHHHHHHTTCHHHHHHHHTTHHHHHHHHH
T ss_pred             HcChHHHHHHHHHHHCHHHHH-----HHHHHHHhHCHHHHHHHHHCHHHHHHHHc
Confidence            445543   455566666663     34444  3678877777777777777663

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=91.29  E-value=0.019  Score=42.20  Aligned_cols=42  Identities=19%  Similarity=0.551  Sum_probs=32.2

Q ss_pred             HHHHHHHhhChhhhhcCCChHHHHHHHHHhhCHHHHHH-HHhh
Q 022855           28 PQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMRE-MMRN   69 (291)
Q Consensus        28 P~~~~m~~~nPe~~~~l~nP~~lrq~~~~~~nP~~~qe-~mr~   69 (291)
                      |.+-+.+..||+++.+|.||++++.+-++.+||+.+++ .+.+
T Consensus        13 p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~d   55 (71)
T 2llv_A           13 PNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTD   55 (71)
T ss_dssp             SSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTC
T ss_pred             hHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhC
Confidence            44444466788899999999988888888889988877 6643

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=87.78  E-value=0.21  Score=47.56  Aligned_cols=48  Identities=23%  Similarity=0.425  Sum_probs=29.1

Q ss_pred             HhccCChHHHHHHHHhhCChHHHHHHh----hCChhHHHhhhhChH-HHHhhC
Q 022855          209 NQMLQNPAVTQMMQSLLSNPQYMNQIL----GLNPQLRSMVDSNSQ-LREMIQ  256 (291)
Q Consensus       209 ~~mm~nP~~~~mmq~l~sNP~l~~qmi----~~nP~l~~m~~~nP~-~~~~m~  256 (291)
                      .-+-++|.|+++-+.+.+||+++..+|    ..||++.+++.+||+ |.++++
T Consensus       238 ~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~  290 (368)
T 1oqy_A          238 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLN  290 (368)
T ss_dssp             HHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHc
Confidence            345567777777777777777766665    356666555555543 444444

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=87.74  E-value=0.2  Score=36.65  Aligned_cols=42  Identities=21%  Similarity=0.592  Sum_probs=19.7

Q ss_pred             hhCCHHHHHhhcCHHHHHHHHhcCHHHHHHHhhChh-hhh-cCCChHHHHHH
Q 022855            4 IMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPE-LAH-ILNDPSTLRQT   53 (291)
Q Consensus         4 mm~nP~~q~lm~NP~~m~~mi~~nP~~~~m~~~nPe-~~~-~l~nP~~lrq~   53 (291)
                      +.+||-++.+|+||+++.-|- .       +.+||. ++. +++||+++.-+
T Consensus        19 l~~dP~t~~~~~DP~~~~~lq-~-------i~~NP~~i~~~~~~dPrv~~~l   62 (71)
T 2llv_A           19 LKKNPKTSEMMKDPQLVAKLI-G-------YKQNPQAIGQDLFTDPRLMTIM   62 (71)
T ss_dssp             HHHSSTTHHHHHSCTHHHHHH-H-------HHHSCTTHHHHTTTCHHHHHHH
T ss_pred             HHcChHHHHHhcCHHHHHHHH-H-------HHHCHHHHHHHHhhCcHHHHHH
Confidence            344455555555555443221 1       334553 345 56666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d2f4mb1	58	XPC-binding domain of Rad23 homolog B (Hhr23b) {Hu	95.55
d2f4mb1	58	XPC-binding domain of Rad23 homolog B (Hhr23b) {Hu	92.05

>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: XPC-binding domain of Rad23 homolog B (Hhr23b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.006  Score=41.74  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=14.4

Q ss_pred             ccCChHHHHHHHHhhCChHHHHHH
Q 022855          211 MLQNPAVTQMMQSLLSNPQYMNQI  234 (291)
Q Consensus       211 mm~nP~~~~mmq~l~sNP~l~~qm  234 (291)
                      +.++|.++++-+.+.+||+++..+
T Consensus         5 Lr~~PqFq~lR~~vq~nP~~L~~l   28 (58)
T d2f4mb1           5 LRNQPQFQQMRQIIQQNPSLLPAL   28 (58)
T ss_dssp             GTTCHHHHHHHHHHHHCGGGHHHH
T ss_pred             HhcChHHHHHHHHHHHCHHHHHHH
Confidence            456666666666666666655444

>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: XPC-binding domain of Rad23 homolog B (Hhr23b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.11  Score=35.19  Aligned_cols=39  Identities=28%  Similarity=0.491  Sum_probs=24.7

Q ss_pred             HHhhhhChHHHHhhCChHHHHh--hcCHHHHHHHHHHHHHHHHhhh
Q 022855          242 RSMVDSNSQLREMIQNPEFLRQ--LTNPETMQQMVTLQQFLLTQLG  285 (291)
Q Consensus       242 ~~m~~~nP~~~~~m~nP~~l~~--m~NP~~mqammQiqq~~~~~~~  285 (291)
                      |+++++||++.+     .++..  -+||+.++.+-+-+..+...++
T Consensus        15 R~~vq~nP~~L~-----~lLqql~~~NP~L~q~I~~nqe~Fl~lln   55 (58)
T d2f4mb1          15 RQIIQQNPSLLP-----ALLQQIGRENPQLLQQISQHQEHFIQMLN   55 (58)
T ss_dssp             HHHHHHCGGGHH-----HHHHHHHHHCHHHHHHHHHSHHHHHHHHT
T ss_pred             HHHHHHCHHHHH-----HHHHHHHhhCHHHHHHHHHCHHHHHHHHc
Confidence            334455555553     45555  3688888888887777777664