Citrus Sinensis ID: 022868
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 291 | ||||||
| 78711803 | 311 | carotenoid beta-ring hydroxylase [Citrus | 1.0 | 0.935 | 0.932 | 1e-154 | |
| 11245486 | 311 | beta-carotene hydroxylase [Citrus unshiu | 1.0 | 0.935 | 0.929 | 1e-153 | |
| 9988836 | 311 | beta-carotene hydroxylase [Citrus unshiu | 1.0 | 0.935 | 0.926 | 1e-148 | |
| 116874786 | 311 | beta-carotene hydroxylase [Citrus kinoku | 1.0 | 0.935 | 0.922 | 1e-148 | |
| 62912179 | 311 | beta carotene hydoxylase [Citrus maxima] | 1.0 | 0.935 | 0.919 | 1e-146 | |
| 325461582 | 305 | beta-carotene hydroxylase [Carica papaya | 0.945 | 0.901 | 0.685 | 1e-111 | |
| 262036878 | 310 | beta-carotene hydroxylase [Ipomoea nil] | 0.969 | 0.909 | 0.692 | 1e-111 | |
| 262036876 | 309 | beta-carotene hydroxylase [Ipomoea obscu | 0.969 | 0.912 | 0.681 | 1e-110 | |
| 262036874 | 309 | beta-carotene hydroxylase [Ipomoea sp. K | 0.982 | 0.925 | 0.673 | 1e-110 | |
| 225464577 | 306 | PREDICTED: beta-carotene hydroxylase 2, | 0.886 | 0.843 | 0.721 | 1e-109 |
| >gi|78711803|gb|ABB49053.1| carotenoid beta-ring hydroxylase [Citrus sinensis] | Back alignment and taxonomy information |
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Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/311 (93%), Positives = 291/311 (93%), Gaps = 20/311 (6%)
Query: 1 MAVGLLAAIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCF 60
MAVGLLAAIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCF
Sbjct: 1 MAVGLLAAIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCF 60
Query: 61 VLEEKKQSTQIETFTEEEEEESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSM 120
VLEEKKQSTQIETFT+EEEEESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSM
Sbjct: 61 VLEEKKQSTQIETFTDEEEEESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSM 120
Query: 121 AVMAVYYRFWWQME--------------------VGMEFWARWAHKALWHASLWHMHESH 160
AVMAVYYRFWWQME VGMEFWARWAHKALWHASLWHMHESH
Sbjct: 121 AVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESH 180
Query: 161 HRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDG 220
HRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDG
Sbjct: 181 HRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDG 240
Query: 221 LVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEELEKEIS 280
LVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEELEKEIS
Sbjct: 241 LVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEELEKEIS 300
Query: 281 KRIKSYNRVPK 291
KRIKSYNRVPK
Sbjct: 301 KRIKSYNRVPK 311
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Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|11245486|gb|AAG33636.1|AF315289_1 beta-carotene hydroxylase [Citrus unshiu] | Back alignment and taxonomy information |
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| >gi|9988836|gb|AAG10793.1|AF296158_1 beta-carotene hydroxylase [Citrus unshiu] | Back alignment and taxonomy information |
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| >gi|116874786|emb|CAL63739.1| beta-carotene hydroxylase [Citrus kinokuni] | Back alignment and taxonomy information |
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| >gi|62912179|gb|AAY21681.1| beta carotene hydoxylase [Citrus maxima] | Back alignment and taxonomy information |
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| >gi|325461582|gb|ADZ14893.1| beta-carotene hydroxylase [Carica papaya] | Back alignment and taxonomy information |
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| >gi|262036878|dbj|BAI47580.1| beta-carotene hydroxylase [Ipomoea nil] | Back alignment and taxonomy information |
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| >gi|262036876|dbj|BAI47579.1| beta-carotene hydroxylase [Ipomoea obscura] | Back alignment and taxonomy information |
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| >gi|262036874|dbj|BAI47578.1| beta-carotene hydroxylase [Ipomoea sp. Kenyan] | Back alignment and taxonomy information |
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| >gi|225464577|ref|XP_002273581.1| PREDICTED: beta-carotene hydroxylase 2, chloroplastic isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 291 | ||||||
| TAIR|locus:2131381 | 310 | BETA-OHASE 1 "beta-hydroxylase | 0.814 | 0.764 | 0.626 | 7.4e-82 | |
| TAIR|locus:2149599 | 303 | BETA-OHASE 2 "beta-carotene hy | 0.529 | 0.508 | 0.753 | 2.3e-62 |
| TAIR|locus:2131381 BETA-OHASE 1 "beta-hydroxylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 163/260 (62%), Positives = 186/260 (71%)
Query: 52 KLNSFTVCFVLEEKKXXXXXXXXX---XXXXXXXXXXXXXAARVAEKLARKRSERFTYLV 108
+ F+VC+V+EE++ A R+AEKL RK+SER TYL+
Sbjct: 41 RFKRFSVCYVVEERRQNSPIENDERPESTSSTNAIDAEYLALRLAEKLERKKSERSTYLI 100
Query: 109 AAVMSSFGITSMAVMAVYYRFWWQME--------------------VGMEFWARWAHKAL 148
AA++SSFGITSMAVMAVYYRF WQME VGMEFWARWAH+AL
Sbjct: 101 AAMLSSFGITSMAVMAVYYRFSWQMEGGEISMLEMFGTFALSVGAAVGMEFWARWAHRAL 160
Query: 149 WHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGIT 208
WHASLW+MHESHH+PREGPFELNDVFAI+NA PAI LLS+GFF+KGLVPGLCFGAGLGIT
Sbjct: 161 WHASLWNMHESHHKPREGPFELNDVFAIVNAGPAIGLLSYGFFNKGLVPGLCFGAGLGIT 220
Query: 209 VFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFXXXXXXXX 268
VFG+AYMFVHDGLVHKRFPVGPIADVPY R+VAAAHQLHH+DKF+GVPYGLF
Sbjct: 221 VFGIAYMFVHDGLVHKRFPVGPIADVPYLRKVAAAHQLHHTDKFNGVPYGLFLGPKELEE 280
Query: 269 XXXXXXXXXXISKRIKSYNR 288
IS+RIKSY +
Sbjct: 281 VGGNEELDKEISRRIKSYKK 300
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| TAIR|locus:2149599 BETA-OHASE 2 "beta-carotene hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 291 | |||
| PLN02601 | 303 | PLN02601, PLN02601, beta-carotene hydroxylase | 1e-144 | |
| pfam04116 | 114 | pfam04116, FA_hydroxylase, Fatty acid hydroxylase | 1e-09 |
| >gnl|CDD|178211 PLN02601, PLN02601, beta-carotene hydroxylase | Back alignment and domain information |
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Score = 406 bits (1045), Expect = e-144
Identities = 187/264 (70%), Positives = 215/264 (81%), Gaps = 22/264 (8%)
Query: 45 FNGKNRRKLNSFTVCFVLEEKKQSTQIETFTEEEEEESGTQISTAARVAEKLARKRSERF 104
FNG RRK+ TVCFV+EE+KQS+ +E + E S ++I +R+ +K +K+SERF
Sbjct: 37 FNGFRRRKI--LTVCFVVEERKQSSPMENDEKPESTTSSSEILMTSRLLKKAEKKKSERF 94
Query: 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQME--------------------VGMEFWARWA 144
TYL+AAVMSSFGITSMA+MAVYYRF WQM+ VGMEFWARWA
Sbjct: 95 TYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEFWARWA 154
Query: 145 HKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAG 204
H+ALWH SLW+MHESHH+PREG FELNDVFAI+NAVPAI LL +GFF+KGLVPGLCFGAG
Sbjct: 155 HRALWHDSLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAG 214
Query: 205 LGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFLGPK 264
LGITVFGMAYMFVHDGLVHKRFPVGPIA+VPY R+VAAAHQLHH+DKF GVPYGLFLGPK
Sbjct: 215 LGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGLFLGPK 274
Query: 265 ELEEVGGLEELEKEISKRIKSYNR 288
E+EEVGG EELEKEIS+RIK YN+
Sbjct: 275 EVEEVGGKEELEKEISRRIKLYNK 298
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Length = 303 |
| >gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 291 | |||
| PLN02601 | 303 | beta-carotene hydroxylase | 100.0 | |
| PF04116 | 114 | FA_hydroxylase: Fatty acid hydroxylase superfamily | 99.42 | |
| PLN02434 | 237 | fatty acid hydroxylase | 98.89 | |
| COG3000 | 271 | ERG3 Sterol desaturase [Lipid metabolism] | 98.36 | |
| PLN02869 | 620 | fatty aldehyde decarbonylase | 97.54 | |
| KOG0539 | 240 | consensus Sphingolipid fatty acid hydroxylase [Lip | 89.38 | |
| KOG0874 | 287 | consensus Sphingolipid hydroxylase [Lipid transpor | 85.77 |
| >PLN02601 beta-carotene hydroxylase | Back alignment and domain information |
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Probab=100.00 E-value=4.7e-111 Score=775.92 Aligned_cols=279 Identities=69% Similarity=1.154 Sum_probs=252.1
Q ss_pred Ccccccc-ccccCcccccccccCCCCCCCCCCCCccCCcccccccccccccCCCCceeEEEEeccccccccccccchhhh
Q 022868 1 MAVGLLA-AIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCFVLEEKKQSTQIETFTEEEE 79 (291)
Q Consensus 1 ma~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 79 (291)
||+|||+ |.|++|.+ + ..+..+.|+++..|+|..+.. +. ||++++|||||+||+++.+++++++++++
T Consensus 1 ma~~~~~~~~t~~~l~--~---~~~~~~~~~~~~~f~~~~~~~---~~---~~~~~~~~c~v~~~~~~~~~~~~~~~~~~ 69 (303)
T PLN02601 1 MAAGLSTIAVTLKPLH--R---SDFRLNHPISLAVFPPSLRFN---GF---RRRKILTVCFVVEERKQSSPMENDEKPES 69 (303)
T ss_pred CcccccccccccccCc--c---cCccCCCCcccccCCHHHHhh---hc---ccCCceeEEEEeccccccccccccchhhh
Confidence 8999998 88999844 4 345555555566788864321 11 23567899999999999887877666665
Q ss_pred hhhhhccchHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--------------------hHHHH
Q 022868 80 EESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQME--------------------VGMEF 139 (291)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~r~~~e~~ty~~aa~~ss~g~tsma~~a~y~~f~~~~~--------------------vgMEf 139 (291)
++.+++.+.++|+|||++|||+||+||++||||||+||||||++||||||+|||+ ++|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf 149 (303)
T PLN02601 70 TTSSSEILMTSRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEF 149 (303)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCccchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhcc
Q 022868 140 WARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHD 219 (291)
Q Consensus 140 ~Aw~aHKyIMHG~LW~~H~sHH~p~~G~FE~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVHD 219 (291)
||||+|||||||+||.||+|||+|++|+||+||+|||+||+|||+||++|+++.|++|++|||||+|||+|||+||||||
T Consensus 150 ~Aw~aHKYvMHG~LW~lH~sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHD 229 (303)
T PLN02601 150 WARWAHRALWHDSLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHD 229 (303)
T ss_pred HHHHHHHHHHHhcchhhhhhcCCCCCCCcccccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred ceecCcccCCcCCCCHHHHHHHHHHHhccCCCCCCcceeeeeechhhhhcCChHHHHHHHHHHhhhccCCC
Q 022868 220 GLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEELEKEISKRIKSYNRVP 290 (291)
Q Consensus 220 glVHqRfp~g~~a~~~Ylrri~~AHklHH~~Ke~Gv~FG~ll~P~kye~vgg~~eL~~~~~r~~~~~~~~~ 290 (291)
||||||||+++++||||+|||++|||+||++|++|||||||++|+|||||||.||||||++||+|++++++
T Consensus 230 gLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGfll~P~e~e~vgg~~el~~~~~~~~~~~~~~~ 300 (303)
T PLN02601 230 GLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGLFLGPKEVEEVGGKEELEKEISRRIKLYNKGS 300 (303)
T ss_pred hhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceEEeccHHHHhcCCHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988754
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| >PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases | Back alignment and domain information |
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| >PLN02434 fatty acid hydroxylase | Back alignment and domain information |
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| >COG3000 ERG3 Sterol desaturase [Lipid metabolism] | Back alignment and domain information |
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| >PLN02869 fatty aldehyde decarbonylase | Back alignment and domain information |
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| >KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism] | Back alignment and domain information |
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| >KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00