Citrus Sinensis ID: 022885

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
MVYSIRSKSRSIISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
cccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEccccccccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEEEccccEEEEEcccccccccccccccccccccccccc
cccEEEccccccHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccHHHHcccHccccccccc
MVYSIRSKSRSIISSMAALKTSVEstfasspinrpagsktmkLEKIRDAQqgftpvlkrrsfskletsssstaaaltrdrtsykvqdgakscggldYFEEMKQRFLSFKKNKYFEELEHFQNlakaqspkfMVIACadsrngpsetNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQddvdsrqslTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWtldykgrkvdeeevgrhsikdhsfws
mvysirsksrsiISSMAALKTSvestfasspinrpagsktmklekirdaqqgftpvlkrrsfskletsssstaaaltrdrtsykvqdgakscGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRkvdeeevgrhsikdhsfws
MVYsirsksrsiissMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKrrsfskletsssstaaaltrdrtsYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
****************************************************************************************AKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACAD********NAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGR*******************
**************************************************************************************************EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSI*D*SFW*
***********IISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRS***************************AKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
*********RSIISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDH*FW*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVYSIRSKSRSIISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query290 2.2.26 [Sep-21-2011]
P16016319 Carbonic anhydrase, chlor N/A no 0.793 0.721 0.340 4e-37
P27140347 Carbonic anhydrase, chlor no no 0.820 0.685 0.344 2e-36
P27141321 Carbonic anhydrase, chlor N/A no 0.810 0.732 0.342 2e-35
P42737259 Carbonic anhydrase 2, chl no no 0.689 0.772 0.356 3e-35
P17067328 Carbonic anhydrase, chlor N/A no 0.586 0.518 0.391 2e-34
P46512330 Carbonic anhydrase 1 OS=F N/A no 0.6 0.527 0.384 3e-34
P46510330 Carbonic anhydrase OS=Fla N/A no 0.6 0.527 0.384 3e-34
P46511330 Carbonic anhydrase OS=Fla N/A no 0.6 0.527 0.384 5e-34
P46281329 Carbonic anhydrase OS=Fla N/A no 0.6 0.528 0.384 9e-34
P40880324 Carbonic anhydrase, chlor N/A no 0.862 0.771 0.315 5e-31
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function desciption
 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 137/270 (50%), Gaps = 40/270 (14%)

Query: 28  ASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQD 87
           A +PI  P   + M  E   +A      +L  +   +LE  ++S  A +T +     + D
Sbjct: 53  APAPIITPTLKEDMAYE---EAIAALKKLLSEKG--ELENEAASKVAQITSE-----LAD 102

Query: 88  GAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSET- 146
           G          + +K+ F+ FKK KY +    +  L+K Q+PKFMV AC+DSR  PS   
Sbjct: 103 GGTPSASYP-VQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACSDSRVCPSHVL 161

Query: 147 ----------------------------NAALEFAVNTLEVQNILVIGHSDCGGIQALMR 178
                                        AA+E+AV  L+V+NI+VIGHS CGGI+ LM 
Sbjct: 162 DFQPGEAFMVRNIANMVPVFDKDKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 221

Query: 179 MQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWI 238
             D   +     E+WV     AK +  A   + +F +QC HCEKE+++ S+ NLLTYP++
Sbjct: 222 FPDAGPTTTDFIEDWVKICLPAKHKVLAEHGNATFAEQCTHCEKEAVNVSLGNLLTYPFV 281

Query: 239 EERVRKELLFIHGGYYDLLNCTFEKWTLDY 268
            + + K+ L + GGYYD +N +FE W L+Y
Sbjct: 282 RDGLVKKTLALQGGYYDFVNGSFELWGLEY 311
Reversible hydration of carbon dioxide.
Spinacia oleracea (taxid: 3562)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function description
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function description
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
302142053328 unnamed protein product [Vitis vinifera] 0.975 0.862 0.529 8e-81
225459107351 PREDICTED: carbonic anhydrase, chloropla 0.789 0.652 0.578 2e-76
116268416301 hypothetical protein [Prunus persica] 0.934 0.900 0.509 4e-74
296087414301 unnamed protein product [Vitis vinifera] 0.751 0.724 0.562 4e-72
359475658300 PREDICTED: carbonic anhydrase 2, chlorop 0.751 0.726 0.562 4e-72
224081947238 predicted protein [Populus trichocarpa] 0.724 0.882 0.576 1e-70
147776525356 hypothetical protein VITISV_003553 [Viti 0.934 0.761 0.490 2e-70
255563296313 carbonic anhydrase, putative [Ricinus co 0.937 0.869 0.458 3e-68
359475660262 PREDICTED: carbonic anhydrase 2, chlorop 0.717 0.793 0.588 9e-68
357489979309 Carbonic anhydrase [Medicago truncatula] 0.672 0.631 0.568 3e-67
>gi|302142053|emb|CBI19256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 172/325 (52%), Positives = 205/325 (63%), Gaps = 42/325 (12%)

Query: 5   IRSKSRSIISSMAALKTSVESTFAS--SPINR--------PAGSKTMKLEKIRDAQQGFT 54
           IRS  R I S+MAAL+ S  S  +S   P N         P      KL ++ +   G  
Sbjct: 5   IRSGIRWIGSTMAALRPSSVSFDSSVSGPTNSFMGLLHKSPIFDSRKKLVRVGETHLGSL 64

Query: 55  PVLKRRSFSKLETSSSSTAAA--LTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNK 112
           P +KR   S+LE SS S      L  ++   +++   K+  GLD+FEE+K RFL FKK K
Sbjct: 65  PSVKRNLVSRLEASSDSLGCGQHLMSNKMGNEMESLDKTDQGLDFFEELKHRFLCFKKQK 124

Query: 113 YFEELEHFQNLAKAQSPKFMVIACADSR----------------------------NGPS 144
           Y EE EHFQ LAKAQSPKFMVIACADSR                            NGPS
Sbjct: 125 YLEEPEHFQALAKAQSPKFMVIACADSRVCPSNILGFQPGEAFMIRNVANLVPPVENGPS 184

Query: 145 ETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRT 204
           ETNAALEFAVNTLEV+NILVIGHS C GI+ L+RM+DDV+S  S  ENWV N KVAK RT
Sbjct: 185 ETNAALEFAVNTLEVENILVIGHSSCAGIETLVRMRDDVNS-SSFVENWVANGKVAKLRT 243

Query: 205 KAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKW 264
           KA   HL F QQC++CEKESI+ S+LNLLTYPWIE+R RK LL IHGGYYD LNCTFEKW
Sbjct: 244 KAAAGHLGFYQQCKYCEKESINHSLLNLLTYPWIEDRERKGLLSIHGGYYDFLNCTFEKW 303

Query: 265 TLDYKGRKVDEEEVGRHSIKDHSFW 289
           T+D+K R   E+E  +  +K+ +FW
Sbjct: 304 TIDFK-RSSIEKEGPKCLVKNRAFW 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459107|ref|XP_002283876.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|116268416|gb|ABJ96373.1| hypothetical protein [Prunus persica] Back     alignment and taxonomy information
>gi|296087414|emb|CBI34003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475658|ref|XP_002263870.2| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224081947|ref|XP_002306538.1| predicted protein [Populus trichocarpa] gi|222855987|gb|EEE93534.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147776525|emb|CAN74016.1| hypothetical protein VITISV_003553 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563296|ref|XP_002522651.1| carbonic anhydrase, putative [Ricinus communis] gi|223538127|gb|EEF39738.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359475660|ref|XP_003631728.1| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357489979|ref|XP_003615277.1| Carbonic anhydrase [Medicago truncatula] gi|355516612|gb|AES98235.1| Carbonic anhydrase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query290
TAIR|locus:2196292290 BCA6 "beta carbonic anhydrase 0.5 0.5 0.529 6.1e-54
TAIR|locus:2134218302 BCA5 "beta carbonic anhydrase 0.513 0.493 0.593 5.6e-45
TAIR|locus:2034797258 BCA3 "beta carbonic anhydrase 0.434 0.488 0.464 1.3e-38
TAIR|locus:2016109280 BCA4 "beta carbonic anhydrase 0.434 0.45 0.472 8.2e-37
TAIR|locus:2185460331 CA2 "carbonic anhydrase 2" [Ar 0.417 0.365 0.446 8.1e-35
TAIR|locus:2084198347 CA1 "carbonic anhydrase 1" [Ar 0.417 0.348 0.421 9e-34
TIGR_CMR|CBU_0139206 CBU_0139 "carbonic anhydrase" 0.341 0.480 0.342 2.4e-19
TIGR_CMR|SPO_3715216 SPO_3715 "carbonic anhydrase, 0.372 0.5 0.321 6.1e-18
TIGR_CMR|CJE_0288211 CJE_0288 "carbonic anhydrase" 0.420 0.578 0.285 2.6e-16
TIGR_CMR|GSU_2307211 GSU_2307 "carbonic anhydrase" 0.406 0.559 0.378 3e-14
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 422 (153.6 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 80/151 (52%), Positives = 107/151 (70%)

Query:   140 RNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKV 199
             +NGP+ETN+ALEFAV TL+V+NI+V+GHS+CGGI ALM  Q+      SL E WV+N K 
Sbjct:   146 QNGPTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKA 205

Query:   200 AKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNC 259
             AK RT+  ++HLSFD+QCR+CEKESI  S++NL+TY WI +RV++  + IHG YY+L +C
Sbjct:   206 AKLRTQLASSHLSFDEQCRNCEKESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDC 265

Query:   260 TFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 290
             + EKW L       D+   G + I D   WS
Sbjct:   266 SLEKWRLSS-----DKTNYGFY-ISDREIWS 290
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3715 SPO_3715 "carbonic anhydrase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.691
4th Layer4.2.1.10.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
PLN03006301 PLN03006, PLN03006, carbonate dehydratase 2e-80
PLN02154290 PLN02154, PLN02154, carbonic anhydrase 9e-68
cd00884190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 4e-66
PLN00416258 PLN00416, PLN00416, carbonate dehydratase 6e-50
PLN03014347 PLN03014, PLN03014, carbonic anhydrase 7e-42
PLN03019330 PLN03019, PLN03019, carbonic anhydrase 8e-34
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 1e-33
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 3e-27
COG0288207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 3e-26
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 7e-23
cd00883182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 2e-15
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 4e-12
PRK10437220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 1e-09
PRK15219245 PRK15219, PRK15219, carbonic anhydrase; Provisiona 4e-04
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information 
 Score =  245 bits (625), Expect = 2e-80
 Identities = 127/264 (48%), Positives = 167/264 (63%), Gaps = 33/264 (12%)

Query: 55  PVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYF 114
           P   RR  + L+  +S     LT++     +     +    D F++MKQRFL+FKK KY 
Sbjct: 43  PASFRRKATNLQVMASGKTPGLTQEANGVAIDRQNNT----DVFDDMKQRFLAFKKLKYM 98

Query: 115 EELEHFQNLAKAQSPKFMVIACADSR----------------------------NGPSET 146
           ++ EH++NLA AQ+PKF+VIACADSR                            +GP+ET
Sbjct: 99  DDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTET 158

Query: 147 NAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKA 206
            AALEF+VNTL V+NILVIGHS CGGIQALM+M+D+ DSR S   NWVV  K AK  TKA
Sbjct: 159 KAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSR-SFIHNWVVVGKKAKESTKA 217

Query: 207 YTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTL 266
             ++L FD QC+HCEK SI+ S+  LL YPWIEE+VR+  L +HGGYY+ ++CTFEKWT+
Sbjct: 218 VASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTV 277

Query: 267 DYKGRKVDEEEVGRHSIKDHSFWS 290
           DY   +  ++E    ++KD S WS
Sbjct: 278 DYAASRGKKKEGSGIAVKDRSVWS 301

Length = 301
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|237927 PRK15219, PRK15219, carbonic anhydrase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 290
PLN03006301 carbonate dehydratase 100.0
PLN03014347 carbonic anhydrase 100.0
PLN03019330 carbonic anhydrase 100.0
PLN02154290 carbonic anhydrase 100.0
PLN00416258 carbonate dehydratase 100.0
PRK10437220 carbonic anhydrase; Provisional 100.0
PRK15219245 carbonic anhydrase; Provisional 100.0
cd00884190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 100.0
cd00883182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 100.0
KOG1578276 consensus Predicted carbonic anhydrase involved in 100.0
COG0288207 CynT Carbonic anhydrase [Inorganic ion transport a 100.0
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 100.0
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 99.97
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 99.96
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 99.94
KOG1578276 consensus Predicted carbonic anhydrase involved in 94.0
>PLN03006 carbonate dehydratase Back     alignment and domain information 
Probab=100.00  E-value=3.5e-58  Score=429.11  Aligned_cols=238  Identities=51%  Similarity=0.892  Sum_probs=208.3

Q ss_pred             hHHHHHhhhHhhhhcC-cccccccccccchhhhHHhhcccccCCCCcccHHHHHHHHHHHHHccccccchhcHHHHHhhh
Q 022885           46 IRDAQQGFTPVLKRRS-FSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLA  124 (290)
Q Consensus        46 ~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~lt~el~~~~~~~~~~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~~~La  124 (290)
                      ..-++.+|-..+|++. +++.+|+  +|+++||+||+....    ++..+++.++++++||+.|+..++.+++++|++|+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La  108 (301)
T PLN03006         35 LKTTQLRIPASFRRKATNLQVMAS--GKTPGLTQEANGVAI----DRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLA  108 (301)
T ss_pred             cceeEecccccccccccchhhhhh--hchHHHHHHHhhccC----CCCCcccHHHHHHHHHHhchhhccccCHHHHHHhc
Confidence            3446778887777665 7789999  999999999986542    23457999999999999999999999999999999


Q ss_pred             hcCCCcEEEEeecCCCCCC-----------------------C-----chhHHHHHHHHhcCccEEEEeccCcchHHHHH
Q 022885          125 KAQSPKFMVIACADSRNGP-----------------------S-----ETNAALEFAVNTLEVQNILVIGHSDCGGIQAL  176 (290)
Q Consensus       125 ~gQ~P~alVI~CsDSRv~p-----------------------~-----~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa  176 (290)
                      +||+|+++||+|||||+.|                       .     ++.+||||||.+|||++|||||||+||||+|+
T Consensus       109 ~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa  188 (301)
T PLN03006        109 DAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQAL  188 (301)
T ss_pred             cCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHH
Confidence            9999999999999999421                       1     36799999999999999999999999999999


Q ss_pred             hhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEEEEEc
Q 022885          177 MRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDL  256 (290)
Q Consensus       177 ~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~~YDi  256 (290)
                      ++..+.+. ..++|+.|+..+++++...........++++++.|+++||++|++||++||+|++++++|+|+|||||||+
T Consensus       189 l~~~~~g~-~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi  267 (301)
T PLN03006        189 MKMEDEGD-SRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNF  267 (301)
T ss_pred             hhccccCC-chhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEEC
Confidence            98765543 34899999999988876654332334677888899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCcCCcccCCccccccCCCCC
Q 022885          257 LNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS  290 (290)
Q Consensus       257 ~tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (290)
                      .||.|+.|.++|+.+.++.|+||+|++|||+|||
T Consensus       268 ~tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (301)
T PLN03006        268 VDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS  301 (301)
T ss_pred             CCceEEEecccccccccccccCCceeeecccccC
Confidence            9999999999999999988899999999999998

>PLN03014 carbonic anhydrase Back     alignment and domain information
>PLN03019 carbonic anhydrase Back     alignment and domain information
>PLN02154 carbonic anhydrase Back     alignment and domain information
>PLN00416 carbonate dehydratase Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
1ekj_A221 The X-Ray Crystallographic Structure Of Beta Carbon 1e-34
3e3g_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 3e-10
3e2x_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 4e-10
3e24_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 7e-10
2a8c_A229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 9e-10
3mf3_A221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 9e-10
3e28_A229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 3e-09
3e1v_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 3e-09
3qy1_A223 1.54a Resolution Crystal Structure Of A Beta-Carbon 2e-08
1i6p_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 3e-08
1i6o_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 4e-08
3ucj_A227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 6e-08
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 3e-07
2a5v_A213 Crystal Structure Of M. Tuberculosis Beta Carbonic 2e-06
1ym3_A215 Crystal Structure Of Carbonic Anhydrase Rv3588c Fro 2e-06
2w3n_A239 Structure And Inhibition Of The Co2-Sensing Carboni 5e-06
2w3q_A243 Structure And Inhibition Of The Co2-Sensing Carboni 5e-06
3eyx_A216 Crystal Structure Of Carbonic Anhydrase Nce103 From 6e-06
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 103/199 (51%), Gaps = 29/199 (14%)
Query: 99  EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE------------- 145
           E +K  FL FKK KY +    +  LAK QSP FMV AC+DSR  PS              
Sbjct: 15  ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 146 ----------------TNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSL 189
                           T AA+E+AV  L+V NI+VIGHS CGGI+ L+    D       
Sbjct: 75  NVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDF 134
Query: 190 TENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFI 249
            E WV     AK + KA      F + C HCEKE+++ S+ NLLTYP++ E +  + L +
Sbjct: 135 IEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLAL 194
Query: 250 HGGYYDLLNCTFEKWTLDY 268
            GGYYD +  +FE W L++
Sbjct: 195 KGGYYDFVKGSFELWGLEF 213
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic Anhydrase, Rv3588c, Tetrameric Form Length = 213 Back     alignment and structure
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 239 Back     alignment and structure
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 243 Back     alignment and structure
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From Saccharomyces Cerevisiae Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query290
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 3e-63
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 2e-49
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 2e-49
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 3e-49
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 1e-47
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 2e-43
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 3e-42
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 1e-41
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 4e-36
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 9e-22
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 3e-21
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 2e-16
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 5e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  197 bits (503), Expect = 3e-63
 Identities = 76/203 (37%), Positives = 103/203 (50%), Gaps = 29/203 (14%)

Query: 96  DYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSR--------------- 140
           +  E +K  FL FKK KY +    +  LAK QSP FMV AC+DSR               
Sbjct: 12  EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 71

Query: 141 --------------NGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSR 186
                            + T AA+E+AV  L+V NI+VIGHS CGGI+ L+    D    
Sbjct: 72  VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYS 131

Query: 187 QSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKEL 246
               E WV     AK + KA      F + C HCEKE+++ S+ NLLTYP++ E +  + 
Sbjct: 132 TDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKT 191

Query: 247 LFIHGGYYDLLNCTFEKWTLDYK 269
           L + GGYYD +  +FE W L++ 
Sbjct: 192 LALKGGYYDFVKGSFELWGLEFG 214
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 100.0
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 100.0
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 100.0
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 100.0
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 100.0
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 100.0
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 100.0
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 99.97
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 99.97
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 99.97
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 99.94
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=100.00  E-value=2e-44  Score=324.46  Aligned_cols=180  Identities=39%  Similarity=0.659  Sum_probs=147.8

Q ss_pred             CcccHHHHHHHHHHHHHccccccchhcHHHHHhhhhcCCCcEEEEeecCCCCC-----------------------CC--
Q 022885           90 KSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNG-----------------------PS--  144 (290)
Q Consensus        90 ~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~~~La~gQ~P~alVI~CsDSRv~-----------------------p~--  144 (290)
                      +|.++++.|.++|+||+.   .++.+++++|++|++||+|+++||||||||+.                       |.  
T Consensus         9 ~p~~~l~~L~~gN~~f~~---~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~   85 (221)
T 1ekj_A            9 PKSEASERIKTGFLHFKK---EKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQ   85 (221)
T ss_dssp             ---CHHHHHHHHHHHHHH---HTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCT
T ss_pred             CHHHHHHHHHHHHHHHHh---cCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCcccc
Confidence            345566666666666555   44557889999999999999999999999942                       11  


Q ss_pred             ----chhHHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHH
Q 022885          145 ----ETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHC  220 (290)
Q Consensus       145 ----~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~  220 (290)
                          ++.+||||||.+|||++|||||||+||||+|+++..+.+....++++.|++.+.|++..........++.+++..+
T Consensus        86 ~~~~~~~asleyAv~~L~v~~IvV~GHs~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (221)
T 1ekj_A           86 AKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHC  165 (221)
T ss_dssp             TTCHHHHHHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred             cccchhHHHHHHHHHhcCCCEEEEEccCCCCceeeecccccccccchHHHHHHHHhhhhHHHHHHhhccCCCHHHHHHHH
Confidence                2568999999999999999999999999999998665443334799999999999876654433345666667788


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEEEEEcCCCeEEEEeccCCCCc
Q 022885          221 EKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRK  272 (290)
Q Consensus       221 ~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~~YDi~tG~ve~~~~~~~~~~  272 (290)
                      +++||+.|+++|++||+|++++++|+|.||||+||++||+|+++.+++..++
T Consensus       166 ~~~nV~~~v~~L~~~p~v~~~~~~g~l~v~G~~ydi~tG~v~~~~~~~~~~~  217 (221)
T 1ekj_A          166 EKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSS  217 (221)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCCeEEEEecCCCCCc
Confidence            9999999999999999999999999999999999999999999999988753
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 290
d1ekja_210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 2e-37
d1i6pa_214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 1e-29
d1ddza2239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 2e-28
d1ddza1242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 6e-26
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 5e-21
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  130 bits (327), Expect = 2e-37
 Identities = 76/200 (38%), Positives = 102/200 (51%), Gaps = 29/200 (14%)

Query: 98  FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSR----------------- 140
            E +K  FL FKK KY +    +  LAK QSP FMV AC+DSR                 
Sbjct: 3   SERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVV 62

Query: 141 ------------NGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 188
                          + T AA+E+AV  L+V NI+VIGHS CGGI+ L+    D      
Sbjct: 63  RNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTD 122

Query: 189 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLF 248
             E WV     AK + KA      F + C HCEKE+++ S+ NLLTYP++ E +  + L 
Sbjct: 123 FIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLA 182

Query: 249 IHGGYYDLLNCTFEKWTLDY 268
           + GGYYD +  +FE W L++
Sbjct: 183 LKGGYYDFVKGSFELWGLEF 202
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query290
d1ekja_210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 100.0
d1ddza2239 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1i6pa_214 beta-carbonic anhydrase {Escherichia coli [TaxId: 100.0
d1ddza1242 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 99.97
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=5.3e-45  Score=322.50  Aligned_cols=175  Identities=44%  Similarity=0.735  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHccccccchhcHHHHHhhhhcCCCcEEEEeecCCCCC-----------------------CC------chh
Q 022885           97 YFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNG-----------------------PS------ETN  147 (290)
Q Consensus        97 ~l~~~n~rf~~f~~~~~~~~~~~~~~La~gQ~P~alVI~CsDSRv~-----------------------p~------~~~  147 (290)
                      +|+++++||.+|+.+++.+++++|++|++||+|+++||||||||+.                       |.      ++.
T Consensus         2 a~e~l~~G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~C~DSRv~~e~if~~~~GdlfvvRnaGn~v~~~~~~~~~~~~   81 (210)
T d1ekja_           2 ASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTG   81 (210)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTTCHHHH
T ss_pred             hHHHHHHHHHHHHhCccccCHHHHHHHhcCCCCceEEEeccccCCChhhhccCCCCcEEEEeccCCccCccccccchhhH
Confidence            4556666666667788888999999999999999999999999942                       21      267


Q ss_pred             HHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 022885          148 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISR  227 (290)
Q Consensus       148 aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~  227 (290)
                      +||||||.+|+|++|||||||+||||+|+++....+....+++..|+..+.|++........+....++.+.++++||+.
T Consensus        82 ~sleyav~~l~v~~IVVlGHt~CGav~Aa~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~  161 (210)
T d1ekja_          82 AAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNA  161 (210)
T ss_dssp             HHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcCCceEEEEEcCcchHHHHHhhhhhhccCccCchHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987766555558999999999999887665544566677788899999999


Q ss_pred             HHHHHhcCHHHHHHHhCCCeEEEEEEEEcCCCeEEEEeccCCCC
Q 022885          228 SILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGR  271 (290)
Q Consensus       228 qv~nL~~~P~I~~~v~~g~L~V~G~~YDi~tG~ve~~~~~~~~~  271 (290)
                      |+++|++||+|++++++|+|.||||+||++||+|+++++++..+
T Consensus       162 ~v~~L~~~p~I~~~v~~g~l~I~G~vYDi~tG~v~~~~~~~g~~  205 (210)
T d1ekja_         162 SLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLS  205 (210)
T ss_dssp             HHHHHTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCC
T ss_pred             HHHHHHcCHHHHHHHHcCCeEEEEEEEECCCcEEEEEeccCCCC
Confidence            99999999999999999999999999999999999999998754
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure