Citrus Sinensis ID: 022888

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFYQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHEccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHcccEccccccccccHHHHHHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHccccccccccccccEEEc
Coil and Loop (DISEMBL)
myrdlgyyWFRLGVYVLLGIGLATVFsnlgtdnnsiQARGSLLMFVASYLTFMtiggfpsfVEDMKVFERErlnghygaTAFVFGNTFSALPYLALISLIPGAIvyylpglhegyQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLmilgggffrlpndlphpfwkyplyYIAFHKYAYQGMFknefeglkfdnnldgeqVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAfmsvpmkqttqimenpcatppqedkifyq
Flexible Loop (DISEMBL)
MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTtqimenpcatppqedkifyq
Low Complexity Region (SEG)
MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFYQ
Disordered region (IsUnstruct)
***DLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSV*************************
Disordered Region (DISOPRED)
MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK**********************************
Disordered Region (DISEMBL)
MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFYQ
Disordered Region (DISPRO)
MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPM***********************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q8RXN0	703	ABC transporter G family	yes	no	0.968	0.399	0.493	2e-71
Q8RWI9	691	ABC transporter G family	no	no	0.948	0.397	0.425	7e-64
Q9C8J8	678	ABC transporter G family	no	no	0.893	0.382	0.422	1e-60
Q9C8K2	687	ABC transporter G family	no	no	0.910	0.384	0.429	4e-57
Q9ZUU9	730	ABC transporter G family	no	no	0.841	0.334	0.313	9e-37
Q3E9B8	624	ABC transporter G family	no	no	0.844	0.392	0.260	2e-24
Q9FLX5	589	ABC transporter G family	no	no	0.817	0.402	0.287	7e-22
Q9SW08	577	ABC transporter G family	no	no	0.817	0.410	0.303	9e-22
Q9SIT6	649	ABC transporter G family	no	no	0.786	0.351	0.263	1e-19
Q9MAH4	590	ABC transporter G family	no	no	0.741	0.364	0.257	2e-19

>sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1

 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/286 (49%), Positives = 203/286 (70%), Gaps = 5/286 (1%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           M RD GYYW RL +Y+L+ + + T++ N+GT  ++I ARGS   FV  ++TFM+IGGFPS
Sbjct: 395 MSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPS 454

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMKVF+RERLNGHYG  AFV  NT SA P+L +I+ I G I Y++ GLH G+ H+++
Sbjct: 455 FVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLF 514

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           FVL L+A + +VESLMM +AS+VPN+L GII GAGIQG+ +L  GFFRLPND+P PFW+Y
Sbjct: 515 FVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRY 574

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDN-----NLDGEQVLRDKWQLQMGYSKWVDLAILF 235
           P+ YI+FH +A QG ++N+  GL FD+      + GE VL + +Q+ +  SKW++L+++ 
Sbjct: 575 PMSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLHRSKWINLSVIL 634

Query: 236 GMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
            M++ YR++F  +IKT E + P V+ +++    +     +N    P
Sbjct: 635 SMIIIYRIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTVAP 680

Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2

 Score =  244 bits (622), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 122/287 (42%), Positives = 187/287 (65%), Gaps = 12/287 (4%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           M RD+GYYW R+  Y+++ I + T+F ++G    SI AR S   F+  ++TFM+IGGFPS
Sbjct: 373 MCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPS 432

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           F+E+MKVF +ERL+G+YG + ++  N  S+ P+L  IS+I G I Y L     G+ H+ +
Sbjct: 433 FLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAF 492

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           F L +F  + ++ESLMM+VAS+VPN+L G+ITGAG+ G++++  GFFRL  DLP  FW+Y
Sbjct: 493 FCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRY 552

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKF------DNNLDGEQVLRDKWQLQMGYSKWVDLAIL 234
           P+ YI++  +A QG +KN+F GL+F      +  + GE+V+   + +++ YSKW DLA +
Sbjct: 553 PVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAV 612

Query: 235 FGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
             ++V YRL+F  ++K  E+  P +KA       Q  + M N    P
Sbjct: 613 VAILVCYRLLFFVVLKLRERAGPALKAI------QAKRTMRNLDRRP 653

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1

 Score =  233 bits (595), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/265 (42%), Positives = 170/265 (64%), Gaps = 6/265 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           M RDLGYYW R+ VY++L I + ++F N+G ++ ++ +  +   F+A ++TFM+IGGF S
Sbjct: 368 MSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQS 427

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           F+E+MKVF RERLNGHYG   +   N  S+LP++ L+ L   +I  Y+     G  HF Y
Sbjct: 428 FIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 487

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
             L L   +  VES MM++AS+VPN+L G++ GAG  G+M+L  GFFR   DLP  FW+Y
Sbjct: 488 NCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRY 547

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDKWQLQMGYSKWVDLAIL 234
           P+ YI +  +A QG +KNE  G+++D+       + GE +L+    +    SKW+DLA++
Sbjct: 548 PVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVV 607

Query: 235 FGMVVFYRLVFLGIIKTVEKMKPVV 259
             +++ YR+ F  I+K  EK+ PV+
Sbjct: 608 MMILIGYRIAFFAILKFREKVFPVI 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1

 Score =  221 bits (564), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 116/270 (42%), Positives = 184/270 (68%), Gaps = 6/270 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           M RD+GYYW R+ +Y+++   + T+F ++G    SI AR S   F+  ++TFM+IGGFPS
Sbjct: 374 MCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPS 433

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           F+E+MKVF +ERL+G+YG + ++  N  S+ P+L  I+LI G+I Y +     G  H+ +
Sbjct: 434 FIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAF 493

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           F L +F  + ++ESLMM+VASLVPN+L G+ITGAGI G++++  GFFRL  DLP  FW+Y
Sbjct: 494 FCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRY 553

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFD------NNLDGEQVLRDKWQLQMGYSKWVDLAIL 234
           P+ ++++  +A QG +KN+F GL+FD        + GEQV+   + +Q+ +SKW DL+ +
Sbjct: 554 PISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAI 613

Query: 235 FGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 264
             ++V YR++F  ++K  E+ +P +KA  +
Sbjct: 614 VLILVCYRILFFIVLKLKERAEPALKAIQA 643

Involved in the secretion of cuticular wax from epidermal cells to the cuticle.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2

 Score =  154 bits (388), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 139/249 (55%), Gaps = 5/249 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           M R+  YYW RL +Y++L + + T++S LG   +S+  R + +    S+ + + I G PS
Sbjct: 454 MSREWKYYWLRLILYMILTLSIGTLYSGLGHSLSSVATRVAAVFVFVSFASLLGIAGIPS 513

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
            ++++K++  E  N H GA  F+ G    ++P+L L+S+    + Y++ GL + +   +Y
Sbjct: 514 LLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMY 573

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           FVL  F C+L+ E LM+ +A +  +     +T   +  +M+L  G FR+   LP P W Y
Sbjct: 574 FVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTY 633

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFD----NNLDGEQVLRDKWQLQMGY-SKWVDLAILF 235
           P  YI+FH Y+ +G+ +NE+ G  F      ++ G Q ++  +Q+     +KW ++ +L 
Sbjct: 634 PFAYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLL 693

Query: 236 GMVVFYRLV 244
            M   YRL+
Sbjct: 694 AMAFGYRLL 702

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9B8|AB23G_ARATH ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 138/257 (53%), Gaps = 12/257 (4%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           +YR    +  R    V+ G+GL +V++ L  D   +  R  L  F  S+L   T+   P 
Sbjct: 363 IYRTKQLFLARTMQAVVAGLGLGSVYTRLKRDEEGVAERLGLFAFSLSFLLSSTVEALPI 422

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           ++ + +V  +E   G Y  ++++  NT + +P+L ++SL+    VY++ GL+   Q F +
Sbjct: 423 YLRERRVLMKESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIPVYWIVGLNPSIQAFSF 482

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           FVL ++  +L+  SL++ ++++ P++++G      + G   L  G+F     +P P W +
Sbjct: 483 FVLCVWLIILMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKEKIPKP-WMF 541

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLK---FDNN-----LDGEQVLRDKWQLQMGYSKWVDLA 232
            +YY++ ++Y  + M  NE+  ++   F +      + GE VL+++   +   ++W+++ 
Sbjct: 542 -MYYVSLYRYPLESMVVNEYWSMREECFSSGNMGCLMTGEDVLKERGLDK--DTRWINVG 598

Query: 233 ILFGMVVFYRLVFLGII 249
           I+    VFYR++  GI+
Sbjct: 599 IMLAFFVFYRILCWGIL 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLX5|AB8G_ARATH ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 125/254 (49%), Gaps = 17/254 (6%)

Query: 16  VLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNG 75
           +++G+ L T++ N+G     I+ R  +  F  ++L   T    P F+ +  +  RE  +G
Sbjct: 339 LVVGLVLGTIYINIGIGKAGIEKRFGMFAFTLTFLLSSTTETLPIFINERPILLRETSSG 398

Query: 76  HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL 135
            Y  ++ +  NT   LPYL +IS+I    VY+L GL   +Q F YFVL+++  +L+  S 
Sbjct: 399 IYRLSSHILANTLVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSF 458

Query: 136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGM 195
           ++ ++SL PNY+TG      +     L  G+F     LP  +W + +Y+ + +KYA   +
Sbjct: 459 VLFLSSLAPNYITGTSLVTILLAAFFLFSGYFISKESLPK-YWLF-MYFFSMYKYALDAL 516

Query: 196 FKNEFEGLKFD------------NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYR- 242
             NE+  L                 + G  VL+ K   +    +W ++ +L G  V YR 
Sbjct: 517 LINEYSCLASKCLVWLEEAQTKICMVTGGDVLKKKGLHEK--QRWFNVYVLLGFFVLYRV 574

Query: 243 LVFLGIIKTVEKMK 256
           L FL +++ V   K
Sbjct: 575 LCFLALLRRVSGSK 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW08|AB4G_ARATH ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=3 SV=1

 Score =  104 bits (259), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 128/254 (50%), Gaps = 17/254 (6%)

Query: 16  VLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNG 75
           +++G+ L T++ N+GT    I+ R  L  F  ++L   T    P F+++  +  RE  +G
Sbjct: 327 LVVGLVLGTIYLNIGTGKEGIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSG 386

Query: 76  HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL 135
            Y  ++ +  NT   LPYL LI++I    +Y+L GL   +Q   YFVL+++  +L+  S 
Sbjct: 387 LYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSF 446

Query: 136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGM 195
           ++ ++SL PNY+ G  +   +     L  G+F     LP  +W + +Y+ + +KYA   +
Sbjct: 447 VLFLSSLAPNYIAGTSSVTILLAAFFLFSGYFISKESLPK-YWLF-MYFFSMYKYALDAL 504

Query: 196 FKNE-----------FEGLKFDNNL-DGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYR- 242
             NE           FE    ++ L  G  VL DK  L     +W ++ +L G  V YR 
Sbjct: 505 LINEYSCLHNKCLVWFEEASVNSCLVTGGDVL-DKNGLH-ERQRWFNVYMLLGFFVLYRV 562

Query: 243 LVFLGIIKTVEKMK 256
           L FL ++K V   K
Sbjct: 563 LCFLVLLKRVSGSK 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 128/239 (53%), Gaps = 11/239 (4%)

Query: 19  GIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYG 78
           GI L  +F NL  D    + R  L  F+ ++L   TI   P F+++ ++  +E  +G Y 
Sbjct: 402 GIVLGLIFHNLKDDLKGARERVGLFAFILTFLLTSTIEALPIFLQEREILMKETSSGSYR 461

Query: 79  ATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI 138
            +++   N    LP+L +++++    VY+L GL+  +  F++F LL++  +    S+++ 
Sbjct: 462 VSSYAVANGLVYLPFLLILAILFSTPVYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVC 521

Query: 139 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKN 198
            ++LVPN++ G    +G+ G   L  G+F   +++P  +W + ++YI+  KY ++G   N
Sbjct: 522 FSALVPNFIVGNSVISGVMGSFFLFSGYFISNHEIPG-YWIF-MHYISLFKYPFEGFLIN 579

Query: 199 EFEGLKFDNNLD---GEQVLRDKWQLQMGY----SKWVDLAILFGMVVFYRLVFLGIIK 250
           EF   K +  L+   G+ ++ ++  L+       S+W ++ I+   V+ YR +   I++
Sbjct: 580 EFS--KSNKCLEYGFGKCLVTEEDLLKEERYGEESRWRNVVIMLCFVLLYRFISYVILR 636

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH4|AB10G_ARATH ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 116/229 (50%), Gaps = 14/229 (6%)

Query: 17  LLGIGLATVFSNLGTDNNSIQA-RGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNG 75
           + G+ L +++ N+G      +  R     F+ ++L   T  G P F++D ++  RE    
Sbjct: 361 IAGLILGSIYLNVGNQKKEAKVLRTGFFAFILTFLLSSTTEGLPIFLQDRRILMRETSRR 420

Query: 76  HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL 135
            Y   ++V  +T   +P+L +IS++    VY+L GL      F+YF L+++  +L+  S 
Sbjct: 421 AYRVLSYVLADTLIFIPFLLIISMLFATPVYWLVGLRRELDGFLYFSLVIWIVLLMSNSF 480

Query: 136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGM 195
           +   ++LVPN++ G    +G+ G   L  G+F   + +P  +W++ ++Y++  KY ++ +
Sbjct: 481 VACFSALVPNFIMGTSVISGLMGSFFLFSGYFIAKDRIP-VYWEF-MHYLSLFKYPFECL 538

Query: 196 FKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLV 244
             NE+ G  F    D ++             KW +L I+   +V YR++
Sbjct: 539 MINEYRGDVFLKQQDLKE-----------SQKWSNLGIMASFIVGYRVL 576

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
224060415	622	white-brown-complex ABC transporter fami	0.910	0.424	0.778	1e-123
224060417	580	white-brown-complex ABC transporter fami	0.886	0.443	0.791	1e-122
255569746	701	ATP-binding cassette transporter, putati	0.968	0.400	0.711	1e-121
357476291	665	White-brown-complex ABC transporter fami	0.968	0.422	0.688	1e-119
356528034	695	PREDICTED: ABC transporter G family memb	0.989	0.412	0.671	1e-118
147782239	691	hypothetical protein VITISV_012972 [Viti	0.968	0.406	0.688	1e-115
359497155	741	PREDICTED: ABC transporter G family memb	0.968	0.379	0.670	1e-114
296084731	592	unnamed protein product [Vitis vinifera]	0.968	0.474	0.670	1e-114
225462868	676	PREDICTED: ABC transporter G family memb	0.968	0.415	0.680	1e-114
297741821	629	unnamed protein product [Vitis vinifera]	0.968	0.446	0.666	1e-113

>gi|224060415|ref|XP_002300188.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222847446|gb|EEE84993.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/271 (77%), Positives = 239/271 (88%), Gaps = 7/271 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           MYRDLGYYW R+ +YV L +GLAT+F NLG+DN+SIQ RGSLLMF+AS+LTFMTIGGFPS
Sbjct: 352 MYRDLGYYWLRVAIYVALALGLATLFYNLGSDNDSIQDRGSLLMFIASFLTFMTIGGFPS 411

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMKVFERERLNGHYGATAFV GNTFSA PYL LIS+IPGAI YYLPGLH+GY+HFIY
Sbjct: 412 FVEDMKVFERERLNGHYGATAFVLGNTFSAFPYLLLISVIPGAITYYLPGLHKGYEHFIY 471

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           FVL+LFACM+LVESLMM VAS+VPN+L GIITGAGIQ  MILGGGFFRLPNDLP PFWKY
Sbjct: 472 FVLVLFACMMLVESLMMTVASMVPNFLMGIITGAGIQAFMILGGGFFRLPNDLPQPFWKY 531

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWVDLAI 233
           P+YYIAFHKYAYQGMFKNEFEGL F +N       + GEQ+LRD+WQ++MG SKWVDLAI
Sbjct: 532 PMYYIAFHKYAYQGMFKNEFEGLTFPSNQTGGPRTIPGEQILRDRWQVEMGVSKWVDLAI 591

Query: 234 LFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 264
           L GMVV YR++FL IIKT EK+KP++ A +S
Sbjct: 592 LLGMVVLYRILFLVIIKTSEKIKPIIAAIVS 622

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060417|ref|XP_002300189.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222847447|gb|EEE84994.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/264 (79%), Positives = 235/264 (89%), Gaps = 7/264 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           MYRDLGYYW R+ +YV L +GLAT+F NLG+DN+SIQ RGSLLMF+AS+LTFMTIGGFPS
Sbjct: 317 MYRDLGYYWLRVAIYVALALGLATLFYNLGSDNDSIQDRGSLLMFIASFLTFMTIGGFPS 376

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMKVFERERLNGHYGATAFVFGNTFSA PYL LIS+IPGAI YYLPGLH+GY+HFIY
Sbjct: 377 FVEDMKVFERERLNGHYGATAFVFGNTFSAFPYLLLISVIPGAITYYLPGLHKGYEHFIY 436

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           FVL+LFACM+LVESLMM VAS+VPN+L GIITGAGIQ  M+LGGGFFRLPNDLP PFWKY
Sbjct: 437 FVLVLFACMMLVESLMMTVASVVPNFLMGIITGAGIQAFMVLGGGFFRLPNDLPQPFWKY 496

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWVDLAI 233
           P+YYIAFHKYAYQGMFKNEFEGL F +N       + GEQ+LRD+WQ++MG SKWVDLAI
Sbjct: 497 PMYYIAFHKYAYQGMFKNEFEGLTFPSNQAGGPRTIPGEQILRDRWQVEMGVSKWVDLAI 556

Query: 234 LFGMVVFYRLVFLGIIKTVEKMKP 257
           L GMVV YR++FL IIKT EK+KP
Sbjct: 557 LLGMVVLYRILFLVIIKTTEKIKP 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569746|ref|XP_002525837.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223534842|gb|EEF36531.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/288 (71%), Positives = 238/288 (82%), Gaps = 7/288 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           M+RDLGYYW RL +YV L +GLATVF NLG+   SI+ RGSLLMF+AS+LTFM IGGFPS
Sbjct: 407 MFRDLGYYWLRLAIYVALAVGLATVFGNLGSSYASIKDRGSLLMFIASFLTFMAIGGFPS 466

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMK+F+RERLNGHYG  AFV GNTFSA+P+L LISL+PGAI Y+LPGLH G +HF+Y
Sbjct: 467 FVEDMKIFQRERLNGHYGTAAFVLGNTFSAIPFLLLISLVPGAITYFLPGLHGGAEHFLY 526

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           F+  LFACM+LVESLMM VAS+VPN+L GIITGAGIQ LMIL GGFFRLP DLP PFWKY
Sbjct: 527 FICSLFACMMLVESLMMTVASIVPNFLMGIITGAGIQSLMILAGGFFRLPRDLPAPFWKY 586

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWVDLAI 233
           P++YIAFH+YAYQGMFKNEFEGL F NN       + GE++LR+ WQ+ + YSKWVDLAI
Sbjct: 587 PMHYIAFHRYAYQGMFKNEFEGLTFPNNQIGGPSEVSGEEILRNIWQVDLSYSKWVDLAI 646

Query: 234 LFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
           L GMVV YRL+FLGII   EK+KP++ A +S   KQTTQIMENP  TP
Sbjct: 647 LLGMVVVYRLLFLGIISIKEKVKPMITALISASPKQTTQIMENPVTTP 694

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476291|ref|XP_003608431.1| White-brown-complex ABC transporter family [Medicago truncatula] gi|355509486|gb|AES90628.1| White-brown-complex ABC transporter family [Medicago truncatula]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/289 (68%), Positives = 244/289 (84%), Gaps = 8/289 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           M+RDLGYYW RLG+Y+ L I LATVF++L   N SIQ RGSLLMFV S+LTFMTIGGFPS
Sbjct: 371 MFRDLGYYWLRLGIYIALAISLATVFNDLDKSNGSIQDRGSLLMFVFSFLTFMTIGGFPS 430

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           +VEDMKVFERERLNGHYG TA+V GNT SA+PYL +ISLIPGAI YY PGL +G++HFIY
Sbjct: 431 YVEDMKVFERERLNGHYGVTAYVIGNTLSAIPYLLMISLIPGAIAYYPPGLQKGFEHFIY 490

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           F+  LF+C++LVESLMMIVAS+VP++L GIITGAGIQG+M+L GGFFRLPNDLP+PFW+Y
Sbjct: 491 FICALFSCLMLVESLMMIVASIVPDFLMGIITGAGIQGIMMLAGGFFRLPNDLPNPFWRY 550

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFD--------NNLDGEQVLRDKWQLQMGYSKWVDLA 232
           P++YI+FH+YA+QG +KNEFEGLKF+        N + GE++LR+K+ + M YSKWVDL 
Sbjct: 551 PMFYISFHRYAFQGSYKNEFEGLKFERDEIGGSLNYISGEEILRNKFHVDMSYSKWVDLG 610

Query: 233 ILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
           +L GM+V YR+VFL IIKT EK+KP+V +FMSV  +QT QI+ENP ATP
Sbjct: 611 VLLGMIVLYRVVFLIIIKTTEKLKPIVMSFMSVSPRQTRQILENPTATP 659

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528034|ref|XP_003532610.1| PREDICTED: ABC transporter G family member 11-like [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/295 (67%), Positives = 242/295 (82%), Gaps = 8/295 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           MYRDLGYYWFRL +Y+ L I LAT+F +LG+   SIQ RGS LMFV+S++TFMTIGGFPS
Sbjct: 400 MYRDLGYYWFRLAIYIALAISLATIFCDLGSSYRSIQERGSFLMFVSSFMTFMTIGGFPS 459

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMKVFERERLNGHY  TAFV GNTFS++PYL L+S+IPG I Y+LPGL + ++HF+Y
Sbjct: 460 FVEDMKVFERERLNGHYSVTAFVIGNTFSSIPYLLLVSIIPGVIAYFLPGLQKDFEHFVY 519

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           F+ +LFAC++LVE LMMIVAS+VPN+LTGIITGAGIQG+MILG GFFRLPNDLP PFWKY
Sbjct: 520 FICVLFACLMLVEGLMMIVASIVPNFLTGIITGAGIQGIMILGAGFFRLPNDLPKPFWKY 579

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN------LDGEQVLRDKWQLQMGYSKWVDLAIL 234
           P++YIAFH+Y YQGMFKNEFEGL+F  N      + GE++LRD WQ+   YSKWVDL I+
Sbjct: 580 PMFYIAFHRYVYQGMFKNEFEGLRFATNNVGGGYISGEEILRDVWQVNTSYSKWVDLGIV 639

Query: 235 FGMVVFYRLVFLGIIKTVEKMKPVVKAFMS--VPMKQTTQIMENPCATPPQEDKI 287
            GM++ YR++FL  IKT EK+KP++ +FMS     K+T  IM+NP ATP QE K+
Sbjct: 640 LGMIIVYRVLFLINIKTTEKLKPIIVSFMSSWSSPKRTILIMQNPNATPLQEVKV 694

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782239|emb|CAN60999.1| hypothetical protein VITISV_012972 [Vitis vinifera]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/286 (68%), Positives = 238/286 (83%), Gaps = 5/286 (1%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           MYRDLGYYW RL +YV L + L T+F N+G  N+SI+ RGS+LM+VAS+LTFM+IGGFPS
Sbjct: 396 MYRDLGYYWLRLAIYVALTVALGTIFHNVGYSNSSIKDRGSMLMYVASFLTFMSIGGFPS 455

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMKVF RERLNGHYG+++FV GNT S++PYL +ISLIPGAI Y+L GL + Y HFIY
Sbjct: 456 FVEDMKVFGRERLNGHYGSSSFVVGNTLSSVPYLLVISLIPGAIAYFLTGLQKEYAHFIY 515

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           + L+LF CM+LVESLMMIVAS+VPN+L GIITGAGIQGL+ILGGGFFRLPNDLP+ FW+Y
Sbjct: 516 YALVLFTCMMLVESLMMIVASVVPNFLMGIITGAGIQGLLILGGGFFRLPNDLPNVFWRY 575

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-----LDGEQVLRDKWQLQMGYSKWVDLAILF 235
           PLYYI+F++YAYQG++KNEF GL F +N     + GE+VLR+ WQ++M YSKWVDL+IL 
Sbjct: 576 PLYYISFNRYAYQGLYKNEFLGLTFPSNIAGRVITGEEVLRETWQMEMAYSKWVDLSILI 635

Query: 236 GMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
           GMVV YR +F   IKT EK+ P VKAFMS P KQT Q+M NP ATP
Sbjct: 636 GMVVLYRFLFFIFIKTTEKVIPTVKAFMSRPPKQTKQVMANPFATP 681

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497155|ref|XP_003635438.1| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/288 (67%), Positives = 240/288 (83%), Gaps = 7/288 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           MYRDLGYYW RL +Y+ L + + T+F ++G    SIQARGS+LMFVA++LTFM IGGFPS
Sbjct: 447 MYRDLGYYWLRLAIYIALCLCVGTIFYDIGFSYGSIQARGSMLMFVAAFLTFMAIGGFPS 506

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMK+F RERLNGHYG  AFV GNTFS++PYL +ISLIPG I YYL GLH+G++HF+Y
Sbjct: 507 FVEDMKIFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVY 566

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           F L+LF CM+LVESLMMIVAS+VP++L GIITGAGIQG+M+L GGFFRLPNDLP PFW+Y
Sbjct: 567 FALMLFVCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRY 626

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWVDLAI 233
           P+YYIAFHKYA QG +KNEF+GL F NN       + GE++L++ WQ++ GYSKWVD+AI
Sbjct: 627 PMYYIAFHKYANQGFYKNEFQGLTFPNNQAGGPPTITGEEILQNVWQVETGYSKWVDVAI 686

Query: 234 LFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
           LFGMVV YRL+FLGIIKTVEK+KP++K  M    +++ QI+ENP ++P
Sbjct: 687 LFGMVVLYRLLFLGIIKTVEKVKPMIKGLMVASPEKSKQIIENPPSSP 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084731|emb|CBI25872.3| unnamed protein product [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/288 (67%), Positives = 240/288 (83%), Gaps = 7/288 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           MYRDLGYYW RL +Y+ L + + T+F ++G    SIQARGS+LMFVA++LTFM IGGFPS
Sbjct: 298 MYRDLGYYWLRLAIYIALCLCVGTIFYDIGFSYGSIQARGSMLMFVAAFLTFMAIGGFPS 357

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMK+F RERLNGHYG  AFV GNTFS++PYL +ISLIPG I YYL GLH+G++HF+Y
Sbjct: 358 FVEDMKIFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVY 417

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           F L+LF CM+LVESLMMIVAS+VP++L GIITGAGIQG+M+L GGFFRLPNDLP PFW+Y
Sbjct: 418 FALMLFVCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRY 477

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWVDLAI 233
           P+YYIAFHKYA QG +KNEF+GL F NN       + GE++L++ WQ++ GYSKWVD+AI
Sbjct: 478 PMYYIAFHKYANQGFYKNEFQGLTFPNNQAGGPPTITGEEILQNVWQVETGYSKWVDVAI 537

Query: 234 LFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
           LFGMVV YRL+FLGIIKTVEK+KP++K  M    +++ QI+ENP ++P
Sbjct: 538 LFGMVVLYRLLFLGIIKTVEKVKPMIKGLMVASPEKSKQIIENPPSSP 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462868|ref|XP_002270647.1| PREDICTED: ABC transporter G family member 11 [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/288 (68%), Positives = 238/288 (82%), Gaps = 7/288 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           MYRDLGYYW RL +YV L + L T+F N+G  N+SI+ RGS+LM+VAS+LTFM+IGGFPS
Sbjct: 379 MYRDLGYYWLRLAIYVALTVALGTIFHNVGYSNSSIKDRGSMLMYVASFLTFMSIGGFPS 438

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMKVF RERLNGHYG+++F+ GNT S++PYL +ISLIPGAI Y+L GL + Y HFIY
Sbjct: 439 FVEDMKVFGRERLNGHYGSSSFLVGNTLSSVPYLLVISLIPGAIAYFLTGLQKEYAHFIY 498

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           + L+LF CM+LVESLMMIVAS+VPN+L GIITGAGIQGL+ILGGGFFRLPNDLP+ FW+Y
Sbjct: 499 YALVLFTCMMLVESLMMIVASVVPNFLMGIITGAGIQGLLILGGGFFRLPNDLPNVFWRY 558

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWVDLAI 233
           PLYYI+F++YAYQG++KNEF GL F +N       + GE+VLR+ WQ++M YSKWVDL+I
Sbjct: 559 PLYYISFNRYAYQGLYKNEFLGLTFPSNIAGGPRVITGEEVLRETWQMEMAYSKWVDLSI 618

Query: 234 LFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
           L GMVV YR +F   IKT EK+ P VKAFMS P KQT Q+M NP ATP
Sbjct: 619 LIGMVVLYRFLFFIFIKTTEKVIPTVKAFMSRPPKQTKQVMANPFATP 666

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741821|emb|CBI33134.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/288 (66%), Positives = 239/288 (82%), Gaps = 7/288 (2%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           MYRDLGYYW RL +Y+ L + + T+F ++G    SIQARGS+LMFVA++LTFM IGGFPS
Sbjct: 335 MYRDLGYYWLRLAIYIALCLCVGTIFYDIGFSYGSIQARGSMLMFVAAFLTFMAIGGFPS 394

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
           FVEDMK+F RERLNGHYG  AFV GNTFS++PYL +ISLIPG I YYL GLH+G++HF+Y
Sbjct: 395 FVEDMKIFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVY 454

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           F L+LF CM+LVESLMMIVAS+VP++L GIITGAGIQG+M+L GGFFRLPNDLP PFW+Y
Sbjct: 455 FALMLFVCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRY 514

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWVDLAI 233
           P+YYIAFHKYA QG +KNEF+GL F NN       + GE++L++ WQ++ GYSKWVD+AI
Sbjct: 515 PMYYIAFHKYANQGFYKNEFQGLTFPNNQAGGPPTISGEEILQNVWQVETGYSKWVDVAI 574

Query: 234 LFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATP 281
           LFGMVV YRL+FLGIIKTVEK+K ++K  M    +++ QI+ENP ++P
Sbjct: 575 LFGMVVLYRLLFLGIIKTVEKVKLMIKDLMVASPEKSKQIIENPPSSP 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2030898	703	ABCG11 "ATP-binding cassette G	0.927	0.382	0.516	1.8e-78
TAIR|locus:2092960	691	ABCG15 "ATP-binding cassette G	0.910	0.382	0.437	1e-61
TAIR|locus:2033899	687	ABCG12 "ATP-binding cassette G	0.910	0.384	0.429	2.7e-61
TAIR|locus:2033939	678	ABCG13 "ATP-binding cassette G	0.948	0.405	0.409	1.9e-58
TAIR|locus:2046203	730	ABCG3 "ATP-binding cassette G3	0.862	0.342	0.305	1.1e-37
CGD|CAL0002254	579	orf19.3120 [Candida albicans (	0.851	0.426	0.297	8.7e-31
UNIPROTKB|Q5A0X6	579	CaO19.10632 "Putative uncharac	0.851	0.426	0.297	8.7e-31
TAIR|locus:2150290	624	ABCG23 "ATP-binding cassette G	0.841	0.391	0.267	3.9e-27
TAIR|locus:2117507	577	ABCG4 "ATP-binding cassette G4	0.817	0.410	0.303	1e-25
TAIR|locus:2176937	589	ABCG8 "ATP-binding cassette G8	0.817	0.402	0.287	4.9e-25

TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 142/275 (51%), Positives = 202/275 (73%)

Query:     1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
             M RD GYYW RL +Y+L+ + + T++ N+GT  ++I ARGS   FV  ++TFM+IGGFPS
Sbjct:   395 MSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPS 454

Query:    61 FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
             FVEDMKVF+RERLNGHYG  AFV  NT SA P+L +I+ I G I Y++ GLH G+ H+++
Sbjct:   455 FVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLF 514

Query:   121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
             FVL L+A + +VESLMM +AS+VPN+L GII GAGIQG+ +L  GFFRLPND+P PFW+Y
Sbjct:   515 FVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRY 574

Query:   181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN-----LDGEQVLRDKWQLQMGYSKWVDLAILF 235
             P+ YI+FH +A QG ++N+  GL FD+      + GE VL + +Q+ +  SKW++L+++ 
Sbjct:   575 PMSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLHRSKWINLSVIL 634

Query:   236 GMVVFYRLVFLGIIKTVEKMKPVVKAFMSVP-MKQ 269
              M++ YR++F  +IKT E + P V+ +++   MKQ
Sbjct:   635 SMIIIYRIIFFIMIKTNEDVTPWVRGYIARRRMKQ 669

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0015245 "fatty acid transporter activity" evidence=TAS

GO:0015908 "fatty acid transport" evidence=TAS

GO:0080051 "cutin transport" evidence=IMP

TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 118/270 (43%), Positives = 183/270 (67%)

Query:     1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
             M RD+GYYW R+  Y+++ I + T+F ++G    SI AR S   F+  ++TFM+IGGFPS
Sbjct:   373 MCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPS 432

Query:    61 FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
             F+E+MKVF +ERL+G+YG + ++  N  S+ P+L  IS+I G I Y L     G+ H+ +
Sbjct:   433 FLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAF 492

Query:   121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
             F L +F  + ++ESLMM+VAS+VPN+L G+ITGAG+ G++++  GFFRL  DLP  FW+Y
Sbjct:   493 FCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRY 552

Query:   181 PLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDKWQLQMGYSKWVDLAIL 234
             P+ YI++  +A QG +KN+F GL+F+        + GE+V+   + +++ YSKW DLA +
Sbjct:   553 PVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAV 612

Query:   235 FGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 264
               ++V YRL+F  ++K  E+  P +KA  +
Sbjct:   613 VAILVCYRLLFFVVLKLRERAGPALKAIQA 642

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 116/270 (42%), Positives = 184/270 (68%)

Query:     1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
             M RD+GYYW R+ +Y+++   + T+F ++G    SI AR S   F+  ++TFM+IGGFPS
Sbjct:   374 MCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPS 433

Query:    61 FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
             F+E+MKVF +ERL+G+YG + ++  N  S+ P+L  I+LI G+I Y +     G  H+ +
Sbjct:   434 FIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAF 493

Query:   121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
             F L +F  + ++ESLMM+VASLVPN+L G+ITGAGI G++++  GFFRL  DLP  FW+Y
Sbjct:   494 FCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRY 553

Query:   181 PLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDKWQLQMGYSKWVDLAIL 234
             P+ ++++  +A QG +KN+F GL+FD        + GEQV+   + +Q+ +SKW DL+ +
Sbjct:   554 PISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAI 613

Query:   235 FGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 264
               ++V YR++F  ++K  E+ +P +KA  +
Sbjct:   614 VLILVCYRILFFIVLKLKERAEPALKAIQA 643

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 116/283 (40%), Positives = 176/283 (62%)

Query:     1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
             M RDLGYYW R+ VY++L I + ++F N+G ++ ++ +  +   F+A ++TFM+IGGF S
Sbjct:   368 MSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQS 427

Query:    61 FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
             F+E+MKVF RERLNGHYG   +   N  S+LP++ L+ L   +I  Y+     G  HF Y
Sbjct:   428 FIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 487

Query:   121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
               L L   +  VES MM++AS+VPN+L G++ GAG  G+M+L  GFFR   DLP  FW+Y
Sbjct:   488 NCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRY 547

Query:   181 PLYYIAFHKYAYQGMFKNEFEGLKFDNNLD------GEQVLRDKWQLQMGYSKWVDLAIL 234
             P+ YI +  +A QG +KNE  G+++D+ L       GE +L+    +    SKW+DLA++
Sbjct:   548 PVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVV 607

Query:   235 FGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENP 277
               +++ YR+ F  I+K  EK+ PV+   M    +  + I + P
Sbjct:   608 MMILIGYRIAFFAILKFREKVFPVIH--MLYTKRTLSHIQKRP 648

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009651 "response to salt stress" evidence=IDA

GO:0080051 "cutin transport" evidence=IMP

GO:0080172 "petal epidermis patterning" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 78/255 (30%), Positives = 142/255 (55%)

Query:     1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
             M R+  YYW RL +Y++L + + T++S LG   +S+  R + +    S+ + + I G PS
Sbjct:   454 MSREWKYYWLRLILYMILTLSIGTLYSGLGHSLSSVATRVAAVFVFVSFASLLGIAGIPS 513

Query:    61 FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
              ++++K++  E  N H GA  F+ G    ++P+L L+S+    + Y++ GL + +   +Y
Sbjct:   514 LLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMY 573

Query:   121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
             FVL  F C+L+ E LM+ +A +  +     +T   +  +M+L  G FR+   LP P W Y
Sbjct:   574 FVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTY 633

Query:   181 PLYYIAFHKYAYQGMFKNEFEGLKFD----NNLDGEQVLRDKWQLQMGYS-KWVDLAILF 235
             P  YI+FH Y+ +G+ +NE+ G  F      ++ G Q ++  +Q+    + KW ++ +L 
Sbjct:   634 PFAYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLL 693

Query:   236 GMVVFYRLVFLGIIK 250
              M   YRL+   +++
Sbjct:   694 AMAFGYRLLVYVLLR 708

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)]

 Score = 344 (126.2 bits), Expect = 8.7e-31, P = 8.7e-31
 Identities = 78/262 (29%), Positives = 141/262 (53%)

Query:     3 RDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFV 62
             RD+  Y+ RL +Y+ L I + TV+  L     +IQ   + + F  ++++FM++   PS++
Sbjct:   316 RDILTYYVRLVMYLGLAILMGTVWLRLQNGQKNIQPFINAIFFSGAFMSFMSVAYIPSYL 375

Query:    63 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFV 122
             ED++ +++ER+NG YG  AF   N    LP+L LI+ +   I +++   H+    F Y++
Sbjct:   376 EDIQSYKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVITFFMVNFHQTASGFWYYL 435

Query:   123 LLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPL 182
             + LF  ++  ES+   +AS+ PN++  +   A   GL +  GGF  +P+++ + FW Y  
Sbjct:   436 MWLFLDLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVGGFL-VPSNILNVFWYYTF 494

Query:   183 YYIAFHKYAYQGMFKNEFEGLKF----------DNNLDGEQVLRDKWQLQ-MGYS---KW 228
             Y+I + +Y +QGM  NEF   +F          D+ L  +  +  K  L+ +GY    K 
Sbjct:   495 YWIDYQRYVFQGMIFNEFTNREFRCGDGCHCMYDSPLASQCKISGKAVLESLGYGNYDKG 554

Query:   229 VDLAILFGMVVFYRLVFLGIIK 250
             + + +L  +V  YR     ++K
Sbjct:   555 LWIGVLIALVFVYRFATYIVLK 576

GO:0005524 "ATP binding" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 344 (126.2 bits), Expect = 8.7e-31, P = 8.7e-31
 Identities = 78/262 (29%), Positives = 141/262 (53%)

Query:     3 RDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFV 62
             RD+  Y+ RL +Y+ L I + TV+  L     +IQ   + + F  ++++FM++   PS++
Sbjct:   316 RDILTYYVRLVMYLGLAILMGTVWLRLQNGQKNIQPFINAIFFSGAFMSFMSVAYIPSYL 375

Query:    63 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFV 122
             ED++ +++ER+NG YG  AF   N    LP+L LI+ +   I +++   H+    F Y++
Sbjct:   376 EDIQSYKKERMNGLYGPLAFSLANFLVGLPFLFLIAAVFSVITFFMVNFHQTASGFWYYL 435

Query:   123 LLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPL 182
             + LF  ++  ES+   +AS+ PN++  +   A   GL +  GGF  +P+++ + FW Y  
Sbjct:   436 MWLFLDLVAAESMTTFIASVFPNFVVSLAITAFANGLWMAVGGFL-VPSNILNVFWYYTF 494

Query:   183 YYIAFHKYAYQGMFKNEFEGLKF----------DNNLDGEQVLRDKWQLQ-MGYS---KW 228
             Y+I + +Y +QGM  NEF   +F          D+ L  +  +  K  L+ +GY    K 
Sbjct:   495 YWIDYQRYVFQGMIFNEFTNREFRCGDGCHCMYDSPLASQCKISGKAVLESLGYGNYDKG 554

Query:   229 VDLAILFGMVVFYRLVFLGIIK 250
             + + +L  +V  YR     ++K
Sbjct:   555 LWIGVLIALVFVYRFATYIVLK 576

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2150290 ABCG23 "ATP-binding cassette G23" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 3.9e-27, P = 3.9e-27
 Identities = 69/258 (26%), Positives = 141/258 (54%)

Query:     1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
             +YR    +  R    V+ G+GL +V++ L  D   +  R  L  F  S+L   T+   P 
Sbjct:   363 IYRTKQLFLARTMQAVVAGLGLGSVYTRLKRDEEGVAERLGLFAFSLSFLLSSTVEALPI 422

Query:    61 FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
             ++ + +V  +E   G Y  ++++  NT + +P+L ++SL+    VY++ GL+   Q F +
Sbjct:   423 YLRERRVLMKESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIPVYWIVGLNPSIQAFSF 482

Query:   121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPND-LPHPFWK 179
             FVL ++  +L+  SL++ ++++ P++++G      + G   L  G+F +P + +P P W 
Sbjct:   483 FVLCVWLIILMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYF-IPKEKIPKP-WM 540

Query:   180 YPLYYIAFHKYAYQGMFKNEFEGLK---FDNN-----LDGEQVLRDKWQLQMGYSKWVDL 231
             + +YY++ ++Y  + M  NE+  ++   F +      + GE VL+++  L    ++W+++
Sbjct:   541 F-MYYVSLYRYPLESMVVNEYWSMREECFSSGNMGCLMTGEDVLKERG-LDKD-TRWINV 597

Query:   232 AILFGMVVFYRLVFLGII 249
              I+    VFYR++  GI+
Sbjct:   598 GIMLAFFVFYRILCWGIL 615

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2117507 ABCG4 "ATP-binding cassette G4" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 77/254 (30%), Positives = 130/254 (51%)

Query:    16 VLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNG 75
             +++G+ L T++ N+GT    I+ R  L  F  ++L   T    P F+++  +  RE  +G
Sbjct:   327 LVVGLVLGTIYLNIGTGKEGIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSG 386

Query:    76 HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL 135
              Y  ++ +  NT   LPYL LI++I    +Y+L GL   +Q   YFVL+++  +L+  S 
Sbjct:   387 LYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSF 446

Query:   136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGM 195
             ++ ++SL PNY+ G  +   +     L  G+F     LP  +W + +Y+ + +KYA   +
Sbjct:   447 VLFLSSLAPNYIAGTSSVTILLAAFFLFSGYFISKESLPK-YWLF-MYFFSMYKYALDAL 504

Query:   196 FKNEFEGLK------FD----NN--LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYR- 242
               NE+  L       F+    N+  + G  VL DK  L     +W ++ +L G  V YR 
Sbjct:   505 LINEYSCLHNKCLVWFEEASVNSCLVTGGDVL-DKNGLHER-QRWFNVYMLLGFFVLYRV 562

Query:   243 LVFLGIIKTVEKMK 256
             L FL ++K V   K
Sbjct:   563 LCFLVLLKRVSGSK 576

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2176937 ABCG8 "ATP-binding cassette G8" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 4.9e-25, P = 4.9e-25
 Identities = 73/254 (28%), Positives = 126/254 (49%)

Query:    16 VLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNG 75
             +++G+ L T++ N+G     I+ R  +  F  ++L   T    P F+ +  +  RE  +G
Sbjct:   339 LVVGLVLGTIYINIGIGKAGIEKRFGMFAFTLTFLLSSTTETLPIFINERPILLRETSSG 398

Query:    76 HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL 135
              Y  ++ +  NT   LPYL +IS+I    VY+L GL   +Q F YFVL+++  +L+  S 
Sbjct:   399 IYRLSSHILANTLVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSF 458

Query:   136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGM 195
             ++ ++SL PNY+TG      +     L  G+F     LP  +W + +Y+ + +KYA   +
Sbjct:   459 VLFLSSLAPNYITGTSLVTILLAAFFLFSGYFISKESLPK-YWLF-MYFFSMYKYALDAL 516

Query:   196 FKNEFEGL---------KFDNNL---DGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYR- 242
               NE+  L         +    +    G  VL+ K   +    +W ++ +L G  V YR 
Sbjct:   517 LINEYSCLASKCLVWLEEAQTKICMVTGGDVLKKKGLHEK--QRWFNVYVLLGFFVLYRV 574

Query:   243 LVFLGIIKTVEKMK 256
             L FL +++ V   K
Sbjct:   575 LCFLALLRRVSGSK 588

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	8e-23
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	2e-22
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-16
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-09
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	7e-08

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 52/252 (20%), Positives = 106/252 (42%), Gaps = 21/252 (8%)

Query: 9   WFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKV 67
             RL   ++  I +  ++   G     +Q     L    + +TF  +      F  ++ V
Sbjct: 362 KVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPV 421

Query: 68  FERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFA 127
           F RE  +G Y  +A+    T + LP   ++  +  +I Y++ GL  G  HF+ F+ L+  
Sbjct: 422 FLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTL 481

Query: 128 CMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAF 187
              +  S   +++    +    +  G       +L GGFF   + +P  ++K+ L Y+++
Sbjct: 482 VANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIP-VYFKW-LSYLSW 539

Query: 188 HKYAYQGMFKNEFEGLK----FDNNL------DGEQVLRDKWQLQMGYSK---WVDLAIL 234
            +Y  +G+  N++  +        N        GE +L       + +     ++DL  L
Sbjct: 540 FRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILE-----TLSFRNADLYLDLIGL 594

Query: 235 FGMVVFYRLVFL 246
             ++ F+RL+  
Sbjct: 595 VILIFFFRLLAY 606

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 5/201 (2%)

Query: 1   MYRDLGY-YWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFP 59
            +RD      +RL   +L+ +   TVF NL T    +   G L   +         G  P
Sbjct: 14  RWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPGLLFFSILFNAFSSLTGISP 73

Query: 60  SFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFI 119
            F+ +  V ERE  +  Y  +A+V       LP   L ++I   IVY++ GL      F 
Sbjct: 74  VFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYFMVGLP--VSRFF 131

Query: 120 YFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWK 179
            F+L+L    L    L + +A+L P++      G  +   ++L  GFF   + +P   W 
Sbjct: 132 LFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGFFIPVDSMPG--WL 189

Query: 180 YPLYYIAFHKYAYQGMFKNEF 200
             +YY+    YA + +  NEF
Sbjct: 190 QWIYYLNPLTYAIEALRANEF 210

Length = 210

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 58/276 (21%), Positives = 117/276 (42%), Gaps = 33/276 (11%)

Query: 1   MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPS 60
           M  +  +  F +   +++ + L++VF NL  + +   +RG  L F   +  F ++    S
Sbjct: 415 MKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIAS 474

Query: 61  FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIY 120
             E   + E+ R    Y  +A    +  S +P+  + S++   I+Y++         F +
Sbjct: 475 MYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFF 534

Query: 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKY 180
           ++L+LF C L +  L   + ++    L+  +T A I  L +     F +P      + K+
Sbjct: 535 YLLILFICTLAMSHLFRSIGAVTKT-LSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKW 593

Query: 181 PLYYIAFHKYAYQGMFKNEFEGLKFDNN------------------------------LD 210
            +YY+    YA++ +  NEF G +F+ +                              +D
Sbjct: 594 -IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVD 652

Query: 211 GEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFL 246
           G+  L+  +Q    + KW +  I+ G  VF+  V++
Sbjct: 653 GDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYI 687

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 12/203 (5%)

Query: 2    YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQ-ARGSLLMFVASYLTFMTIGGFPS 60
            +R   Y + +  + +   + +   F  +GT    +Q    ++ M    +   +     P 
Sbjct: 1092 WRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQ-QYLPP 1150

Query: 61   FVEDMKVFE-RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGL-------H 112
            FV    ++E RER +  +   AF+       +PY  +   I   I YY  G         
Sbjct: 1151 FVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTG 1210

Query: 113  EGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPND 172
            + ++  + F LL     L   +L  +V S  PN     +  + +  + +   G    P+ 
Sbjct: 1211 QVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSR 1270

Query: 173  LPHPFWKYPLYYIAFHKYAYQGM 195
            +P  FW + +Y  +   Y  Q +
Sbjct: 1271 MPG-FWIF-MYRCSPFTYLVQAL 1291

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 62/265 (23%), Positives = 105/265 (39%), Gaps = 28/265 (10%)

Query: 4    DLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGF----P 59
            +L  ++F L   +++G    T+F  +GT  ++      ++  + + + F+ I       P
Sbjct: 1213 NLVRFFFTLAAALMVG----TIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQP 1268

Query: 60   SFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFI 119
                +  VF RER  G Y A  +        +PY+ + +     IVY +         F 
Sbjct: 1269 MVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFF 1328

Query: 120  YFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHP--- 176
            +F  + F   L      M+  SL PN     I  A   GL  L  GFF     +P P   
Sbjct: 1329 WFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFF-----IPRPKIP 1383

Query: 177  ---FWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDG-EQVLRDKWQLQMGYSKWVDL- 231
                W Y +  +A+  Y   G+  +++  ++    + G       KW +Q  Y    D  
Sbjct: 1384 KWWVWYYWICPVAWTVY---GLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFM 1440

Query: 232  ----AILFGMVVFYRLVFLGIIKTV 252
                A+L G  VF+  +F   I+T+
Sbjct: 1441 GPVAAVLVGFTVFFAFIFAFCIRTL 1465

Length = 1470

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.85
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.77
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.74
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.73
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.66
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.63
PRK15066	257	inner membrane transport permease; Provisional	99.6
TIGR01248	152	drrC daunorubicin resistance protein C. The model	99.39
COG0842	286	ABC-type multidrug transport system, permease comp	99.35
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.88
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.78
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	98.67
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	98.52
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	98.48
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	98.46
COG1277	278	NosY ABC-type transport system involved in multi-c	97.66
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	97.64
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	97.55
COG4587	268	ABC-type uncharacterized transport system, permeas	97.41
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	97.35
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	97.22
COG1511	780	Predicted membrane protein [Function unknown]	96.98
PF08370	65	PDR_assoc: Plant PDR ABC transporter associated; I	96.76
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.72
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.53
PF06182	229	ABC2_membrane_6: ABC-2 family transporter protein;	95.88
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	95.41
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	95.06
COG2386	221	CcmB ABC-type transport system involved in cytochr	94.06
COG4200	239	Uncharacterized protein conserved in bacteria [Fun	93.61
COG3559	536	TnrB3 Putative exporter of polyketide antibiotics	92.98
KOG4255	439	consensus Uncharacterized conserved protein [Funct	87.61
TIGR03732	241	lanti_perm_MutE lantibiotic protection ABC transpo	84.21
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	83.65

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=3.9e-42  Score=334.78  Aligned_cols=252  Identities=21%  Similarity=0.404  Sum_probs=236.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhCCCCch
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKVFERERLNGHYGA   79 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~~   79 (290)
                      .||||.++..++++.+++|+++|.+|++.+.++++++++.|.+|++++...+..+ ..++.++.||.++.||+.+|+|++
T Consensus       354 ~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~  433 (617)
T TIGR00955       354 VLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV  433 (617)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCH
Confidence            3799999999999999999999999999999999999999999999888887765 778899999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 022888           80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGL  159 (290)
Q Consensus        80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~  159 (290)
                      .+|++||+++++|..++.+++|.++.|+|+|+++++.+|+.+++++++..+++.++|+++++++||...|+.++++++.+
T Consensus       434 ~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~  513 (617)
T TIGR00955       434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIP  513 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcc-c---------CCCCHHHHHhhhhccccCccchh
Q 022888          160 MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF-D---------NNLDGEQVLRDKWQLQMGYSKWV  229 (290)
Q Consensus       160 ~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~-~---------c~~~g~~~L~~~~~~~~~~~~~~  229 (290)
                      +++++|++++.++||+ ||+ |++|+||++|++++++.|||+|.++ .         |+.+|+++++. +|++.++ .|.
T Consensus       514 ~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~~-~~~  589 (617)
T TIGR00955       514 FLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET-LSFRNAD-LYL  589 (617)
T ss_pred             HHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh-cCCCccc-HHH
Confidence            9999999999999998 676 5999999999999999999998764 3         45679999998 8998876 899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888          230 DLAILFGMVVFYRLVFLGIIKTVEKMK  256 (290)
Q Consensus       230 ~~~iL~~~~v~~~~l~~~~l~~~~~~~  256 (290)
                      |+++|+++.++|+++++++|+++.+++
T Consensus       590 ~~~il~~~~~~~~~l~~~~L~~~~~~~  616 (617)
T TIGR00955       590 DLIGLVILIFFFRLLAYFALRIRIRRK  616 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999865543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=4.4e-41  Score=350.24  Aligned_cols=253  Identities=22%  Similarity=0.427  Sum_probs=239.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCCchH
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGAT   80 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~   80 (290)
                      +||||.++..++++.+++|+++|++|++++++++++++|.|++|+++++.+++++..++.+..||++|.||+.+++|+++
T Consensus       415 ~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~  494 (1394)
T TIGR00956       415 MKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPS  494 (1394)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHH
Confidence            48999999999999999999999999999999999999999999999998888888888888999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 022888           81 AFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLM  160 (290)
Q Consensus        81 ~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~~  160 (290)
                      +|++|+.++++|..++.+++|.+++|||+|+++++++|+.+++++++..+++.+++.++++++||...|+.+++++++++
T Consensus       495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~  574 (1394)
T TIGR00956       495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL  574 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC------------------------------CC
Q 022888          161 ILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------------------------------LD  210 (290)
Q Consensus       161 ~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~------------------------------~~  210 (290)
                      ++++|+++|.++||. ||+ |++|+||++|++|+++.|||+|.++.|+                              ++
T Consensus       575 ~lf~Gf~i~~~~mp~-~~~-W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~  652 (1394)
T TIGR00956       575 SIYTGFAIPRPSMLG-WSK-WIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVD  652 (1394)
T ss_pred             HHHcccccChhhccH-HHH-HHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCccccc
Confidence            999999999999998 666 5999999999999999999999887762                              37


Q ss_pred             HHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888          211 GEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK  256 (290)
Q Consensus       211 g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~  256 (290)
                      |+++|+..++++.++ .|+|+++|++|+++|++++++++++.+...
T Consensus       653 G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~~~~  697 (1394)
T TIGR00956       653 GDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNKGAK  697 (1394)
T ss_pred             HHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            899999768898886 999999999999999999999999876433

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.2e-40  Score=346.35  Aligned_cols=254  Identities=21%  Similarity=0.356  Sum_probs=236.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCCh---hhHHHhHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhCCC
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDN---NSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKVFERERLNGH   76 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~   76 (290)
                      +||||.++..|+++.+++|+++|++|++++++.   .+++++.|++|+++.+.++.++ ..+|.+..||.+|.||+.+|+
T Consensus      1206 ~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~ 1285 (1470)
T PLN03140       1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGM 1285 (1470)
T ss_pred             HHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            489999999999999999999999999998764   5677889999988887777665 667899999999999999999


Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 022888           77 YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI  156 (290)
Q Consensus        77 Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~  156 (290)
                      |++.+|++|++++|+|+.++++++|.+++|+|+|++++.+.|+.+++++++..+++.++|+++++++||.+.|..+++++
T Consensus      1286 Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~ 1365 (1470)
T PLN03140       1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAF 1365 (1470)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC-------CCHHHHHhhhhccccCccchh
Q 022888          157 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWV  229 (290)
Q Consensus       157 ~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~-------~~g~~~L~~~~~~~~~~~~~~  229 (290)
                      +.++++|+|+++|.++||. ||+| ++|+||++|++++++.++|.|.+..|+       .++++++.+.+|+++++ .|+
T Consensus      1366 ~~~~~lf~Gf~i~~~~iP~-~~~W-~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 1442 (1470)
T PLN03140       1366 YGLFNLFSGFFIPRPKIPK-WWVW-YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGP 1442 (1470)
T ss_pred             HHHHHHHeeeccChHHCch-HHHH-HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccc-ccc
Confidence            9999999999999999998 7885 999999999999999999999887654       35678877779999886 999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888          230 DLAILFGMVVFYRLVFLGIIKTVEKMKP  257 (290)
Q Consensus       230 ~~~iL~~~~v~~~~l~~~~l~~~~~~~~  257 (290)
                      +++++++|+++|++++++++|+.+++|+
T Consensus      1443 ~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140       1443 VAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence            9999999999999999999999998773

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.7e-39  Score=316.96  Aligned_cols=244  Identities=17%  Similarity=0.295  Sum_probs=217.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHh-hhchhhhhhhHHHHHHHHhCCCCchH
Q 022888            2 YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMT-IGGFPSFVEDMKVFERERLNGHYGAT   80 (290)
Q Consensus         2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~er~v~~rE~~~g~Y~~~   80 (290)
                      |||+.+...|+++.+++|+++|++|++++  .+++++|.|++|+++++..+.+ +..++.++.||+++.||+.+|+|++.
T Consensus       403 ~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~  480 (659)
T PLN03211        403 RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLS  480 (659)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHH
Confidence            68899999999999999999999999985  6789999999999988776655 58899999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 022888           81 AFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLM  160 (290)
Q Consensus        81 ~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~~  160 (290)
                      +|++||+++|+|..++.+++|.+++|||+|+++++++|+.+++++++..+++.++|+++++++||...|+.++++++.++
T Consensus       481 ~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~  560 (659)
T PLN03211        481 SYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAF  560 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCc-----ccCCC------CHHHHHhhhhccccCccchh
Q 022888          161 ILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK-----FDNNL------DGEQVLRDKWQLQMGYSKWV  229 (290)
Q Consensus       161 ~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~-----~~c~~------~g~~~L~~~~~~~~~~~~~~  229 (290)
                      ++|||++++  ++|+ ||+| ++|+||++|++++++.|||.+.+     +.|+.      .+..++.. ..++.. +.|.
T Consensus       561 ~lfsGf~i~--~ip~-~~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~-~~~~~~-~~~~  634 (659)
T PLN03211        561 VLTGGFYVH--KLPS-CMAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE-DVAGQI-SPAT  634 (659)
T ss_pred             HHHhhhhHh--hchH-HHHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh-hhhccc-chHH
Confidence            999999996  7998 6775 99999999999999999998653     24531      11223333 223323 4899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Q 022888          230 DLAILFGMVVFYRLVFLGIIKTVE  253 (290)
Q Consensus       230 ~~~iL~~~~v~~~~l~~~~l~~~~  253 (290)
                      |+++|+++.++++++++++|++.+
T Consensus       635 ~~~~l~~~~~~~~~l~~~~L~~~~  658 (659)
T PLN03211        635 SVSVLIFMFVGYRLLAYLALRRIK  658 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998654

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=3.6e-38  Score=327.97  Aligned_cols=250  Identities=18%  Similarity=0.315  Sum_probs=230.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCCh---hhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCC
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDN---NSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHY   77 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y   77 (290)
                      ++||+..++.++++.+++|+++|++|++.+.++   .+.+.+.|.+|++++...+.++..++.++.||++|.|||+.++|
T Consensus       529 ~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y  608 (1470)
T PLN03140        529 MKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH  608 (1470)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCc
Confidence            479999999999999999999999999997542   34566788888888888888888899999999999999999999


Q ss_pred             chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 022888           78 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQ  157 (290)
Q Consensus        78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~  157 (290)
                      ++++|++|+.+.++|..++.+++|.+++|||+|+++++++|+.+++++++..+++.+++.+++++++|...|+.++++++
T Consensus       609 ~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~  688 (1470)
T PLN03140        609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVL  688 (1470)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCccc---C----CCCHHHHHhhhhccccCc-cchh
Q 022888          158 GLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD---N----NLDGEQVLRDKWQLQMGY-SKWV  229 (290)
Q Consensus       158 ~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~---c----~~~g~~~L~~~~~~~~~~-~~~~  229 (290)
                      +++++++||++|.++||+ ||+| ++|+||++|++++++.|||.+..+.   |    .++|+++|+. +|++.++ +.|.
T Consensus       689 l~~~lf~Gf~i~~~~ip~-w~~W-~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~  765 (1470)
T PLN03140        689 LLVFLLGGFILPKGEIPN-WWEW-AYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWI  765 (1470)
T ss_pred             HHHHHHccceechHhCch-HHHH-HHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-cCcCccccchhh
Confidence            999999999999999998 6775 9999999999999999999876543   2    2789999987 8887654 4799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Q 022888          230 DLAILFGMVVFYRLVFLGIIKTVE  253 (290)
Q Consensus       230 ~~~iL~~~~v~~~~l~~~~l~~~~  253 (290)
                      ++++|++++++|++++++++++.+
T Consensus       766 ~~~iL~~~~v~f~~l~~l~L~~~~  789 (1470)
T PLN03140        766 GVGALLGFTILFNVLFTLALTYLN  789 (1470)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999876

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=2.4e-38  Score=329.87  Aligned_cols=248  Identities=17%  Similarity=0.282  Sum_probs=228.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHH-HHHHhCCCCch
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVF-ERERLNGHYGA   79 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~g~Y~~   79 (290)
                      +||||.++..|+++.+++|+++|++|+++++++.+++|+.+.+|+.+....+.....++.++.||.++ .||+.+|+|++
T Consensus      1091 ~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~ 1170 (1394)
T TIGR00956      1091 YWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSW 1170 (1394)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCH
Confidence            48999999999999999999999999999999999999999999888777666557888899999886 89999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 022888           80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQH-------FIYFVLLLFACMLLVESLMMIVASLVPNYLTGIIT  152 (290)
Q Consensus        80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~-------f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i  152 (290)
                      .+|++|++++|+|..++.+++|.+++|+++|++++...       |+.++++++++.+++.++|+++++++||...|+.+
T Consensus      1171 ~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~ 1250 (1394)
T TIGR00956      1171 LAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVL 1250 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence            99999999999999999999999999999999887765       99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC------------------------
Q 022888          153 GAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------------------------  208 (290)
Q Consensus       153 ~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~------------------------  208 (290)
                      +++++.++++|||+++|.++||. +|+| ++|+||++|++++++.++|+|.++.|.                        
T Consensus      1251 ~~~~~~~~~lf~G~~~~~~~ip~-~~~w-~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~ 1328 (1394)
T TIGR00956      1251 ASLLFTMCLSFCGVLAPPSRMPG-FWIF-MYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLE 1328 (1394)
T ss_pred             HHHHHHHHHHhccccCChhHCcH-HHhH-HHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHh
Confidence            99999999999999999999998 7885 999999999999999999998875431                        


Q ss_pred             --------------------CCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888          209 --------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE  253 (290)
Q Consensus       209 --------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~  253 (290)
                                          .+|+++|+. ++++.++ .|+|+++++++.+++ ++++++++++.
T Consensus      1329 ~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~~-~w~~~~i~~~~~~~~-~~~~~~l~~~~ 1390 (1394)
T TIGR00956      1329 NAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYSG-RWRNFGIFIAFIFFN-IIATVFFYWLA 1390 (1394)
T ss_pred             hCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCcccc-cccchhhhhHHHHHH-HHHHHhhheEE
Confidence                                389999998 7888876 999999999999888 77778787753

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.2e-36  Score=289.80  Aligned_cols=253  Identities=30%  Similarity=0.601  Sum_probs=236.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhCCCCch
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKVFERERLNGHYGA   79 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~~   79 (290)
                      ++|||.+...|.++.+..++++|.+|++.+.+..+++++.+++++++....+..+ ++++.++.||++|.||+.+|+|+.
T Consensus       351 ~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~  430 (613)
T KOG0061|consen  351 IRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRL  430 (613)
T ss_pred             HhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhH
Confidence            3799999999999999999999999999999999999999999999998877776 689999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 022888           80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGL  159 (290)
Q Consensus        80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~  159 (290)
                      ++|++|+.++++|..++.+++|.+++|+|+|++++..+|+.+.+++++..+++.++|+++++..||...|..+++++..+
T Consensus       431 s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~  510 (613)
T KOG0061|consen  431 SSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLP  510 (613)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCc--------ccCCCCHHHHHhhhhccccCccchhhH
Q 022888          160 MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK--------FDNNLDGEQVLRDKWQLQMGYSKWVDL  231 (290)
Q Consensus       160 ~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~--------~~c~~~g~~~L~~~~~~~~~~~~~~~~  231 (290)
                      ++++||++++.+++|+ +|+ |++|+|+.+|++|+++.|+|.+..        ..|..+|.+++++ .+++.++ .|.|+
T Consensus       511 f~l~~G~fi~~~~ip~-~~~-w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~l  586 (613)
T KOG0061|consen  511 FLLFGGFFINFDSIPK-YFR-WISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQ-LGFEDSS-FWLDL  586 (613)
T ss_pred             HHHHhhhhcCcccccH-HHH-HHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHh-cCCcccc-cchhH
Confidence            9999999999999998 555 599999999999999999999622        2345899999999 7887765 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888          232 AILFGMVVFYRLVFLGIIKTVEKMKP  257 (290)
Q Consensus       232 ~iL~~~~v~~~~l~~~~l~~~~~~~~  257 (290)
                      .+++++.++|+++++++++++.+++.
T Consensus       587 ~~l~~~~~~~~il~y~~L~~~~~~~~  612 (613)
T KOG0061|consen  587 LVLLAFIVFFRVLGYLALRFRVKRKR  612 (613)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccC
Confidence            99999999999999999999877553

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.9e-35  Score=292.26  Aligned_cols=254  Identities=24%  Similarity=0.437  Sum_probs=235.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCC-CChhhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCCch
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLG-TDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGA   79 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~   79 (290)
                      +.||..++....++.++.++++|++|++.+ ++..+...|.+.+||.+++..+.++..++.....|++++|+|+...|++
T Consensus       453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p  532 (1391)
T KOG0065|consen  453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPP  532 (1391)
T ss_pred             HhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccCh
Confidence            368999999999999999999999999999 6777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 022888           80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGL  159 (290)
Q Consensus        80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~  159 (290)
                      +++.++..+.++|..++.+.++.+|.|++.|+.+++++|+.++++++++..++.++..++++++++...|+.++.+.++.
T Consensus       533 ~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~  612 (1391)
T KOG0065|consen  533 WAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLV  612 (1391)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC---------------------------CCHH
Q 022888          160 MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN---------------------------LDGE  212 (290)
Q Consensus       160 ~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~---------------------------~~g~  212 (290)
                      ..+++|+.+|.++||+ ||+ |++|++|+.|++|+++.|||.+..++|.                           ..|+
T Consensus       613 i~m~~Gf~Ip~~~m~~-W~~-Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~  690 (1391)
T KOG0065|consen  613 LFMYGGFVIPKKDMPP-WFR-WIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR  690 (1391)
T ss_pred             HHHHcceeeeccccch-HHH-HHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence            9999999999999998 666 5999999999999999999999888874                           3455


Q ss_pred             HHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888          213 QVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP  257 (290)
Q Consensus       213 ~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~  257 (290)
                      +++...|++++.+ .|+|++++++|.++|.++..+++.+.+..+.
T Consensus       691 ~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~  734 (1391)
T KOG0065|consen  691 DYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLKK  734 (1391)
T ss_pred             cccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            6666656677765 9999999999999999999999999775544

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2e-33  Score=279.25  Aligned_cols=254  Identities=19%  Similarity=0.302  Sum_probs=229.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhhh-chhhhhhhHHHHHHHHhCCCCch
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIG-GFPSFVEDMKVFERERLNGHYGA   79 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~er~v~~rE~~~g~Y~~   79 (290)
                      +||||.++..|+++.++.|+++|+.||+.+++..+++|.++.+|+.+.+..-...+ ..+.+..||.++.||+.+|+||+
T Consensus      1117 yWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~ 1196 (1391)
T KOG0065|consen 1117 YWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSW 1196 (1391)
T ss_pred             HhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccH
Confidence            69999999999999999999999999999999999999999999998877666554 55666778888899999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 022888           80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGL  159 (290)
Q Consensus        80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~  159 (290)
                      .+|++|++++|+|..++++.+|.++.|+++|+..++.+++.+++..+++.++...+|+++.+++||.+.|..+.++++..
T Consensus      1197 ~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~ 1276 (1391)
T KOG0065|consen 1197 TPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSF 1276 (1391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC------------CCHHHHHhhhhc----ccc
Q 022888          160 MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------------LDGEQVLRDKWQ----LQM  223 (290)
Q Consensus       160 ~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~------------~~g~~~L~~~~~----~~~  223 (290)
                      .++|||++.|++.||+ ||.| ++|+||.+|.+++++...+++.+..|.            .+-.++++..+|    +.+
T Consensus      1277 ~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~ 1354 (1391)
T KOG0065|consen 1277 WNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLH 1354 (1391)
T ss_pred             HHHhcccccccccccc-eeee-eeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceec
Confidence            9999999999999999 8995 999999999999999999999998884            455678888777    555


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888          224 GYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP  257 (290)
Q Consensus       224 ~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~  257 (290)
                      +. .-..-.+...+.+.+..++.+.+|+.+++|.
T Consensus      1355 n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1355 NP-LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred             cC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence            43 3334456667888999999999999887654

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.85  E-value=5.8e-23  Score=173.32  Aligned_cols=195  Identities=26%  Similarity=0.378  Sum_probs=172.5

Q ss_pred             CCCChhHH-HHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhCCCCc
Q 022888            1 MYRDLGYY-WFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKVFERERLNGHYG   78 (290)
Q Consensus         1 ~~R~~~~~-~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~   78 (290)
                      .+|||... ...++.+++.++++|.++.+.+++.++. ++.+.+...+....+... .......+||+.+.||+.++.|+
T Consensus        14 ~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (210)
T PF01061_consen   14 FWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERERGTLERERASPLYS   92 (210)
T ss_pred             HHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhcccccccccccccc
Confidence            37999888 9999999999999999999888444444 667777777666665544 44477899999999999999999


Q ss_pred             hHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 022888           79 ATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQG  158 (290)
Q Consensus        79 ~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~  158 (290)
                      +.+|.++|.+.+++..++..+++..+.+.+.|++.+  +++.+.+++++...++.++|.+++.++++.+.+..+.+.+..
T Consensus        93 ~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  170 (210)
T PF01061_consen   93 PFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLILL  170 (210)
T ss_pred             chhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhhhhhhhhhhhccc
Confidence            999999999999999999999999999999999866  778888999999999999999999999999999999999999


Q ss_pred             HHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhc
Q 022888          159 LMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF  200 (290)
Q Consensus       159 ~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~  200 (290)
                      +++++||.++|.+++|+  |.+|+.+++|.+|+.|++..++|
T Consensus       171 ~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  171 LLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             ccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999997  44469999999999999988765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.77  E-value=1.3e-16  Score=137.79  Aligned_cols=225  Identities=12%  Similarity=0.023  Sum_probs=152.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHH-hHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCCch
Q 022888            1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQA-RGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGA   79 (290)
Q Consensus         1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~   79 (290)
                      .+|||..+...+.+|+++-++++.++-+.. ..+..+. ..+.+-+.....+.......-..-+|+..++|-+.++. ++
T Consensus         1 ~~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~-~~   78 (232)
T TIGR00025         1 LLRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPL-PR   78 (232)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCC-cH
Confidence            479999999999999999999988886521 1122221 12222222222222221111222334445667776666 99


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHH
Q 022888           80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVP---NYLTGIITGAGI  156 (290)
Q Consensus        80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~---~~~~a~~i~~~~  156 (290)
                      .+|+++|.+...+..+.+..+...+ +.+.|.+.... ....++...+....+.+++.+++.+.+   +.+.+..+.+.+
T Consensus        79 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~  156 (232)
T TIGR00025        79 LGILAGRSLAVVARVFLQTLILLVI-GFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV  156 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            9999999888888877776555544 45678875432 334444555555666777777777764   444557788888


Q ss_pred             HHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHHHH
Q 022888          157 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFG  236 (290)
Q Consensus       157 ~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~  236 (290)
                      .+++.++||.++|.+.||+  |.+|+++++|.+|+.+++.....++.+.                  + ..|.+++++++
T Consensus       157 ~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~~~~------------------~-~~~~~~~~l~~  215 (232)
T TIGR00025       157 WFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVSVDT------------------F-GAVRDLVVVLA  215 (232)
T ss_pred             HHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCCCCh------------------h-hHHHHHHHHHH
Confidence            9999999999999999998  5556999999999999987655443222                  1 26889999999


Q ss_pred             HHHHHHHHHHHHHH
Q 022888          237 MVVFYRLVFLGIIK  250 (290)
Q Consensus       237 ~~v~~~~l~~~~l~  250 (290)
                      +++++..++....|
T Consensus       216 ~~~v~~~la~~~~~  229 (232)
T TIGR00025       216 FWVALAALAAIRLR  229 (232)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99888877766444

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.74  E-value=5.6e-16  Score=134.01  Aligned_cols=221  Identities=13%  Similarity=0.025  Sum_probs=161.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHhCCC-CC--hhhHHH----hHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhC
Q 022888            2 YRDLGYYWFRLGVYVLLGIGLATVFSNLG-TD--NNSIQA----RGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLN   74 (290)
Q Consensus         2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~-~~--~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~   74 (290)
                      +|||..++..+++|++..+++|.++-+.- ++  .++...    ..|.+.+.....+... .......+|+..++|-+.+
T Consensus         7 ~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~   85 (236)
T TIGR01247         7 IRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS-GISVIWDRQFGFLKEILVA   85 (236)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCHHHHHHhC
Confidence            69999999999999999999999875431 11  111111    1233333333222222 1111223444455555555


Q ss_pred             CCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 022888           75 GHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGA  154 (290)
Q Consensus        75 g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~  154 (290)
                      +. ++.+|+++|.+.+.+..+++..+...+.+++.+.+.  ..+....+...+..++..++|.+++...+|++.++.+.+
T Consensus        86 P~-~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~  162 (236)
T TIGR01247        86 PA-SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMS  162 (236)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            55 899999999999999999999888888888777553  345555566667788889999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHH
Q 022888          155 GIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAIL  234 (290)
Q Consensus       155 ~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL  234 (290)
                      .+..++.++||.++|.+.+|+ +++ |+.+++|.+|+.|++.....++.+.                  + +.+.++++|
T Consensus       163 ~~~~~l~~lsG~~~P~~~~P~-~~~-~i~~~~P~~~~~~~~r~~~~~~~~~------------------~-~~~~~~~~l  221 (236)
T TIGR01247       163 MLMLPMFFLSGAFYPITTMPA-WMQ-GLAKINPLTYAVDGARYYLAGVSPT------------------F-PLEQDLLVL  221 (236)
T ss_pred             HHHHHHHHHHHhhcCHHhCHH-HHH-HHHHHCcHHHHHHHHHHHHhCCCcc------------------c-chHHHHHHH
Confidence            999999999999999999998 445 5999999999999976544332211                  2 267899999


Q ss_pred             HHHHHHHHHHHHH
Q 022888          235 FGMVVFYRLVFLG  247 (290)
Q Consensus       235 ~~~~v~~~~l~~~  247 (290)
                      +++.+++..++..
T Consensus       222 ~~~~~~~~~l~~~  234 (236)
T TIGR01247       222 TLLAVIFVGIAAV  234 (236)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888754

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.73  E-value=8.1e-16  Score=134.47  Aligned_cols=226  Identities=15%  Similarity=0.061  Sum_probs=160.1

Q ss_pred             CCC-hhHHHHHHHHHHHHHHHHHHHHhCCCCChhh--HHHh--HHHHHHHHHHHHHH-hhhchhhhhhhHHHHHHHHhCC
Q 022888            2 YRD-LGYYWFRLGVYVLLGIGLATVFSNLGTDNNS--IQAR--GSLLMFVASYLTFM-TIGGFPSFVEDMKVFERERLNG   75 (290)
Q Consensus         2 ~R~-~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~--~~~~--~~~l~~~~~~~~~~-~~~~~~~~~~er~v~~rE~~~g   75 (290)
                      +|+ |......+++|++.-+++|..+-...++.++  ..+.  -|++.+.+...+.. +....-.-.+|+..++|-+...
T Consensus        19 ~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~P   98 (253)
T TIGR01291        19 KKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTP   98 (253)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCC
Confidence            577 8999999999999999999998643221111  1111  13333322222211 1111111223455566666666


Q ss_pred             CCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 022888           76 HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAG  155 (290)
Q Consensus        76 ~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~  155 (290)
                      . ++..++++|.+.+....+++.++...+.+. .|..+ ..+......++++..+++.++|.+++.+.++.+.+..+.+.
T Consensus        99 v-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~-~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~  175 (253)
T TIGR01291        99 I-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIE-WWSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSL  175 (253)
T ss_pred             C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            6 899999999999988888887766555544 44433 34555566677778888899999999999999999999999


Q ss_pred             HHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHHH
Q 022888          156 IQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILF  235 (290)
Q Consensus       156 ~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~  235 (290)
                      +..|++++||.+.|.+.+|+  |.+++.+++|++|+.|++....+++ +.                  . +.+.+++++.
T Consensus       176 i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~g~-~~------------------~-~~~~~~~~l~  233 (253)
T TIGR01291       176 VITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVMLGG-PG------------------T-QVGLHLGALC  233 (253)
T ss_pred             HHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHhCC-Cc------------------H-HHHHHHHHHH
Confidence            99999999999999999998  5455999999999999987654332 11                  1 2567889999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 022888          236 GMVVFYRLVFLGIIKTV  252 (290)
Q Consensus       236 ~~~v~~~~l~~~~l~~~  252 (290)
                      ++.+++..++...+|++
T Consensus       234 ~~~vv~~~la~~~fr~~  250 (253)
T TIGR01291       234 LYAVVPFFISAALLRRR  250 (253)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99998888887766643

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.66  E-value=2.1e-15  Score=127.99  Aligned_cols=157  Identities=14%  Similarity=0.059  Sum_probs=127.8

Q ss_pred             HHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q 022888           70 RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTG  149 (290)
Q Consensus        70 rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a  149 (290)
                      |++.+.. +.+.++++|.+...+..+++.++...+.+++.|++++  ++..+++.+.+..+++.++|.+++...++...+
T Consensus        51 ~~~~~p~-~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~  127 (208)
T TIGR03062        51 RALPKSA-RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF  127 (208)
T ss_pred             cccccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH
Confidence            3344444 7889999999999999999999999999998898753  677888888999999999999999999876543


Q ss_pred             HHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchh
Q 022888          150 IITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWV  229 (290)
Q Consensus       150 ~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~  229 (290)
                        +......++++++|.+.|.+++|+ +++ |+++++|.+|+.+++....++|. .                   .+.|.
T Consensus       128 --~~~~~~~~~~~~sG~~~P~~~~P~-~~~-~i~~~~P~t~~~~~~r~~~~~~~-~-------------------~~~~~  183 (208)
T TIGR03062       128 --LALVLLVLQLGSSGGTFPIELLPA-FFQ-AIHPFLPMTYSVNGLRQLISGGN-D-------------------GTLWQ  183 (208)
T ss_pred             --HHHHHHHHHHccCCCccchhhCHH-HHH-HhhhhCcHHHHHHHHHHHHhCCc-H-------------------HHHHH
Confidence              444455677778999999999998 445 69999999999999976665432 1                   13788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Q 022888          230 DLAILFGMVVFYRLVFLGIIKTVE  253 (290)
Q Consensus       230 ~~~iL~~~~v~~~~l~~~~l~~~~  253 (290)
                      ++++|+++.+++..++....|+++
T Consensus       184 ~~~~L~~~~~v~~~la~~~~~~~~  207 (208)
T TIGR03062       184 AVAVLLLILVVFLALSLLSARRKR  207 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999888777655

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.63  E-value=1.3e-13  Score=120.46  Aligned_cols=221  Identities=10%  Similarity=0.019  Sum_probs=154.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHhCC-CC------Ch-hhH--HHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 022888            2 YRDLGYYWFRLGVYVLLGIGLATVFSNL-GT------DN-NSI--QARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERE   71 (290)
Q Consensus         2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~-~~------~~-~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE   71 (290)
                      .|||..+...+++|++..+++|.+|... +.      +. .+.  .-..|++.+......+.. .......+|+...++-
T Consensus        16 ~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-~~~~~~~r~~g~~~~l   94 (253)
T TIGR03861        16 VQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-SLSMVYDREMGSMRVL   94 (253)
T ss_pred             HHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh-hhHhHHhHhcCHHHHH
Confidence            6999999999999999999999998542 11      00 011  111233333222222221 1111223444456666


Q ss_pred             HhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 022888           72 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGII  151 (290)
Q Consensus        72 ~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~  151 (290)
                      +.... ++..+.++|.+.+....+++.++...+.+. .|.+.+..++......+.+..++..++|++++.++++.+.+..
T Consensus        95 ~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~  172 (253)
T TIGR03861        95 LTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAG  172 (253)
T ss_pred             hhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            66666 899999999999998888887766655543 4665554445555556666778889999999999999888888


Q ss_pred             HHHHHHHHHHHhcccccCCCCC---CcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccch
Q 022888          152 TGAGIQGLMILGGGFFRLPNDL---PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKW  228 (290)
Q Consensus       152 i~~~~~~~~~l~sG~~~~~~~~---p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~  228 (290)
                      +.+.+..+++++||.+.|.+.+   |+  |.+|+.+++|++|..|++.....++                      . .|
T Consensus       173 i~~~~~~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~g~----------------------~-~~  227 (253)
T TIGR03861       173 VMNFVIFPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALYGQ----------------------L-NL  227 (253)
T ss_pred             HHHHHHHHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHhCC----------------------c-ch
Confidence            8888999999999999999877   55  5556999999999999997443211                      1 35


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 022888          229 VDLAILFGMVVFYRLVFLGIIK  250 (290)
Q Consensus       229 ~~~~iL~~~~v~~~~l~~~~l~  250 (290)
                      .+++++.++.+++..++....|
T Consensus       228 ~~~~~~~~~~~v~~~~~~~~fr  249 (253)
T TIGR03861       228 PALGWTLGATTLFTLLAFWGFD  249 (253)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Confidence            5667888888888877766554

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.60  E-value=5.3e-13  Score=116.95  Aligned_cols=164  Identities=13%  Similarity=0.116  Sum_probs=123.3

Q ss_pred             HHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 022888           68 FERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYL  147 (290)
Q Consensus        68 ~~rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~  147 (290)
                      .+|-+.+.. ++..+.+++.+......+++.++...+.....|.++.  ........+++........|.+++.+.++.+
T Consensus        93 ~~~l~vtp~-~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~  169 (257)
T PRK15066         93 IEELLVSPV-PNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFD  169 (257)
T ss_pred             HHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence            334444555 8999999999998888777777666666655566543  3333444444444545556899998888888


Q ss_pred             HHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccc
Q 022888          148 TGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSK  227 (290)
Q Consensus       148 ~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~  227 (290)
                      ....+.+.+..+++++||.+.|.+++|+  |.+++.+++|++|..|++....+.+.                    +.+.
T Consensus       170 ~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~g~~--------------------~~~~  227 (257)
T PRK15066        170 DISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFLGIS--------------------DVPL  227 (257)
T ss_pred             HHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHcCCC--------------------CccH
Confidence            8888999999999999999999999998  55569999999999999976544221                    1126


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888          228 WVDLAILFGMVVFYRLVFLGIIKTVEKMK  256 (290)
Q Consensus       228 ~~~~~iL~~~~v~~~~l~~~~l~~~~~~~  256 (290)
                      |.++++++++.+++..++....|+.++.|
T Consensus       228 ~~~l~~l~~~~~v~~~la~~~~~r~~~~~  256 (257)
T PRK15066        228 WLAFAVLLVFIVVLYLLAWYLLERGRGLR  256 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            78999999999999999988777665544

>TIGR01248 drrC daunorubicin resistance protein C

Probab=99.39  E-value=7e-12  Score=101.14  Aligned_cols=132  Identities=11%  Similarity=-0.023  Sum_probs=102.7

Q ss_pred             hhhhhHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHH---HHHHHHHHHHHHHHH
Q 022888           60 SFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYF---VLLLFACMLLVESLM  136 (290)
Q Consensus        60 ~~~~er~v~~rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~---~l~~~l~~~~~~~lg  136 (290)
                      ..-+|+..++|-+.+.. ++.+++++|.+......+++..+...+.+. .|++.+. .+...   .++..+.......+|
T Consensus        13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~   89 (152)
T TIGR01248        13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALV   89 (152)
T ss_pred             HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778889998888 999999999999999999998888888864 4887653 33333   333344555666666


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHh
Q 022888          137 MIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFK  197 (290)
Q Consensus       137 ~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~  197 (290)
                      ..++...++++..+ ..+.+.+|+.++||.+.|.++||+  |.+|+.+++|++|+.+++..
T Consensus        90 ~~~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~  147 (152)
T TIGR01248        90 MAMALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACAD  147 (152)
T ss_pred             HHHHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHH
Confidence            77766666665444 457788999999999999999998  77779999999999999874

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=99.35  E-value=2.4e-10  Score=100.34  Aligned_cols=169  Identities=19%  Similarity=0.251  Sum_probs=128.1

Q ss_pred             hhHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 022888           63 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVA-S  141 (290)
Q Consensus        63 ~er~v~~rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is-~  141 (290)
                      +|+..+.|-..+.. +...+++++.+.......+...+...+..+..|.. ...++.....++.+..+...++|.+++ .
T Consensus       115 ~~~g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~  192 (286)
T COG0842         115 REFGTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTF  192 (286)
T ss_pred             HhhCcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666 54666777777766666666555555666666643 445677777788888888889999766 3


Q ss_pred             hccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhcc
Q 022888          142 LVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQL  221 (290)
Q Consensus       142 ~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~  221 (290)
                      ..++.+.+..+++.+..++.++||.+.|.+.+|+  |.+++.+++|.+|+.+++......+...                
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~~~----------------  254 (286)
T COG0842         193 AKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGWRN----------------  254 (286)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCCch----------------
Confidence            5567778888888999999999999999999998  5556999999999999998666554332                


Q ss_pred             ccCccchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 022888          222 QMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEK  254 (290)
Q Consensus       222 ~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~  254 (290)
                        + +.+.++++++++.+++.+++...+|++++
T Consensus       255 --~-~~~~~~~~l~~~~~v~~~~~~~~~~~~~~  284 (286)
T COG0842         255 --D-GIWISLLILLLFAVVFLLLGLLLLRRRRK  284 (286)
T ss_pred             --h-hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              1 27889999999999999999887777654

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.88  E-value=9e-07  Score=77.54  Aligned_cols=152  Identities=14%  Similarity=0.084  Sum_probs=116.1

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 022888           78 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQ  157 (290)
Q Consensus        78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~  157 (290)
                      ++..+.+++++.++....+..++.....-+ .|..+ ..++......+.+..+.+.++|++++.+.-...--..+...+.
T Consensus       106 p~~~~~~~~~~~~~~~~~i~~iiil~~~i~-~~~~~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~  183 (263)
T COG1682         106 PPLILPVARTLSRLFNFLIHLIIILIFLII-LGVEP-SWHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQILGVVL  183 (263)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHH
Confidence            889999999999988777777655544444 34433 4577777788888888899999999998766655566777778


Q ss_pred             HHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHHHHH
Q 022888          158 GLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGM  237 (290)
Q Consensus       158 ~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~  237 (290)
                      .+++..+|.+.|.+.+|+ .+++ +.++||+.+..|......+.|...                     .+.+....+++
T Consensus       184 ~~~f~~sPIi~~~~~~p~-~~~~-~~~~NP~~~iie~~R~~~~~~~~~---------------------~~~~~~~~~~~  240 (263)
T COG1682         184 QLLFFLSPIIYPVSNLPE-QLRE-LVLLNPLTHIIESFRAPLLGGDVP---------------------DLHLLVYILLL  240 (263)
T ss_pred             HHHHHhCceeeehhhccH-HHHH-HHHHCcHHHHHHHHHHHHhCCCcc---------------------cHHHHHHHHHH
Confidence            889999999999999998 4665 999999999999998777655321                     23455666667


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 022888          238 VVFYRLVFLGIIKTVEK  254 (290)
Q Consensus       238 ~v~~~~l~~~~l~~~~~  254 (290)
                      .++...+++...++.+|
T Consensus       241 ~li~l~vg~~~~~~~~~  257 (263)
T COG1682         241 TLILLFVGLLLFRKFRK  257 (263)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            77777777777776554

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.78  E-value=3.1e-06  Score=73.40  Aligned_cols=152  Identities=16%  Similarity=0.120  Sum_probs=96.0

Q ss_pred             HHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHH---hhhhHHHhcCccc---cchhHHHHHHHHHHHHHHHH
Q 022888           67 VFERERLNGHY--------GATAFVFGNTFSALPYLALISL---IPGAIVYYLPGLH---EGYQHFIYFVLLLFACMLLV  132 (290)
Q Consensus        67 v~~rE~~~g~Y--------~~~~y~lak~l~~~~~~~~~~~---i~~~i~y~~~g~~---~~~~~f~~~~l~~~l~~~~~  132 (290)
                      .+.|||++|..        ++.+++++|.+.......+...   ++..... ..|.+   .+.+.+....+..++...+.
T Consensus        72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~  150 (240)
T TIGR03518        72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIY-QLGNPVGNLDIGSTFGSYIGLLLLGSVY  150 (240)
T ss_pred             HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccccccHHHHHHHHHHHHHHHHHH
Confidence            34566666664        7999999999998755443332   1221221 12222   24556666666667777899


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCC--CcccccccccccCHHHHHHHHhHhhhcCCCcccCCCC
Q 022888          133 ESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDL--PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLD  210 (290)
Q Consensus       133 ~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~--p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~  210 (290)
                      .++|.++|++++|+..|..++......+.  .|... ..++  |+  |.+|+.++||.+|..+..     +| .+     
T Consensus       151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l~--~~~~~-l~~~~~~~--~~~~l~~~sp~~~~~~~~-----~g-~i-----  214 (240)
T TIGR03518       151 TAIGLFASSLTENQIVAFIIAVFLCFLFY--FGFDG-LASLLWGG--SAYTISELGLSYHYESIS-----RG-VI-----  214 (240)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHH--HHHHH-Hhhhcchh--HHHHHHHcCHHHHHHHHH-----cC-cc-----
Confidence            99999999999998887665554433322  22221 2333  54  556799999987765544     11 11     


Q ss_pred             HHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHh
Q 022888          211 GEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT  251 (290)
Q Consensus       211 g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~  251 (290)
                                      .+.|+...+.+++++..++...+++
T Consensus       215 ----------------~~~~~v~~~~~~~~~l~l~~~~~~~  239 (240)
T TIGR03518       215 ----------------DSRDVIYFLSITVLFLALTKLQLKS  239 (240)
T ss_pred             ----------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence                            3467888888888888888776554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=98.67  E-value=3.6e-09  Score=95.02  Aligned_cols=157  Identities=23%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             hhhhH--HHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCc---cccchhHHHHHHHHHHHHHHHHHHH
Q 022888           61 FVEDM--KVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPG---LHEGYQHFIYFVLLLFACMLLVESL  135 (290)
Q Consensus        61 ~~~er--~v~~rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g---~~~~~~~f~~~~l~~~l~~~~~~~l  135 (290)
                      ..+||  ++..|-+.+|. ++..|+++|.+..+...+++.++...+   ..|   ++.  .++...++.+++..++..++
T Consensus       182 i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~  255 (344)
T PF12698_consen  182 IVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFISF  255 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHHH
Confidence            34444  44556667777 999999999999999999888776664   444   433  36677778889999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHH
Q 022888          136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVL  215 (290)
Q Consensus       136 g~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L  215 (290)
                      |.+++.++++...+..++.++..+...++|...|.+++|+ +++ ++.++.|..|..+++.....++  .          
T Consensus       256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~P~~~~~~~~~~~~~~~--~----------  321 (344)
T PF12698_consen  256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS-FLQ-WISSFLPFYWFIQGLRNIIYGD--W----------  321 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-HHH-HHHHHhhHHHHHHHHHHHHHhc--H----------
Confidence            9999999999999888877777767777777788899998 455 4899999999888875443211  1          


Q ss_pred             hhhhccccCccchhhHHHHHHHHHHHHHHHH
Q 022888          216 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFL  246 (290)
Q Consensus       216 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~  246 (290)
                              . +.|.++++++++.+++.++++
T Consensus       322 --------~-~~~~~~~~l~~~~~v~~~l~~  343 (344)
T PF12698_consen  322 --------S-EIWISLIILLLFAVVYLLLAI  343 (344)
T ss_dssp             -------------------------------
T ss_pred             --------H-HHHHHHHHHHHHHHHHHHHHh
Confidence                    1 267788888888888877664

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.52  E-value=1.6e-07  Score=70.43  Aligned_cols=50  Identities=16%  Similarity=0.371  Sum_probs=45.6

Q ss_pred             CCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhhhcccch
Q 022888          209 LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVV  259 (290)
Q Consensus       209 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~~~  259 (290)
                      ++|++||+..|+++.+| .|+|++|+++|+++|.++.++++.+.+..+.+.
T Consensus        31 V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~   80 (103)
T PF06422_consen   31 VSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGG   80 (103)
T ss_pred             EeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence            78999999779999998 999999999999999999999999988777653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=98.48  E-value=5.5e-05  Score=66.46  Aligned_cols=167  Identities=16%  Similarity=0.249  Sum_probs=97.5

Q ss_pred             HHHHHHhCCC--------CchHHHHHHHHHHHhhHHHH---HHHhhh---hHHHhcCccccchhHHHHHHHHHHHHHH--
Q 022888           67 VFERERLNGH--------YGATAFVFGNTFSALPYLAL---ISLIPG---AIVYYLPGLHEGYQHFIYFVLLLFACML--  130 (290)
Q Consensus        67 v~~rE~~~g~--------Y~~~~y~lak~l~~~~~~~~---~~~i~~---~i~y~~~g~~~~~~~f~~~~l~~~l~~~--  130 (290)
                      .+.+|+++|.        .++..++++|.+......++   ...+-.   .......|.+.+..++....+......+  
T Consensus        89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (277)
T PF12679_consen   89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV  168 (277)
T ss_pred             HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence            4566777776        48999999999998876332   211111   1122224455556665555544444444  


Q ss_pred             -HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccc-CCCCCCccccc--ccccccCHHHHHHHHhHhhhcCCCccc
Q 022888          131 -LVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFR-LPNDLPHPFWK--YPLYYIAFHKYAYQGMFKNEFEGLKFD  206 (290)
Q Consensus       131 -~~~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~-~~~~~p~~~w~--~~l~~isP~~y~~~~l~~~~~~~~~~~  206 (290)
                       +..+++.++|++++|...|...+..+............ ..++.....|.  ..+.+++|..+ ++.+.....++.+. 
T Consensus       169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~-  246 (277)
T PF12679_consen  169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGFV-  246 (277)
T ss_pred             HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccccc-
Confidence             56999999999999988888777765555443333332 22222110011  11567777543 33333222222110 


Q ss_pred             CCCCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 022888          207 NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTV  252 (290)
Q Consensus       207 c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~  252 (290)
                                     +  ...|.++++++++.+++..+++..+++|
T Consensus       247 ---------------~--~~~~~~~~~~~~~~~v~l~la~~~F~rr  275 (277)
T PF12679_consen  247 ---------------W--LSTWPSLLILLAYTLVFLALAYYRFQRR  275 (277)
T ss_pred             ---------------h--hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                           0  1378899999999999999998766654

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=98.46  E-value=6.4e-05  Score=66.11  Aligned_cols=110  Identities=15%  Similarity=0.024  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhc
Q 022888          121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF  200 (290)
Q Consensus       121 ~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~  200 (290)
                      .....++..+.+.++|+++|.+..-......+.+.+..+++..||.+.|.+.+|+ .+++ +-+.||+.+..|+.....+
T Consensus       151 ~~~~~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~-~~~~-il~~NPl~~~ie~~R~~~~  228 (264)
T PRK15176        151 IFEGMVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPY-SLLS-IFSWNPLLHANEIVREGMF  228 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcH-HHHH-HHHHCcHHHHHHHHHHHHh
Confidence            3344445666677888887776543333445566778888899999999999998 3554 8899999999999987776


Q ss_pred             CCCcccCCCCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888          201 EGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE  253 (290)
Q Consensus       201 ~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~  253 (290)
                      +|..-                     .+.+....+++.++..++++...|+.|
T Consensus       229 ~~~~~---------------------~~~~~~~~~~~~~~~l~~G~~~~~~~~  260 (264)
T PRK15176        229 EGYHS---------------------LYLEPFYPLAFSATLFLAGLIFHLICD  260 (264)
T ss_pred             cCcCc---------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55311                     233556777888888778877666543

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=97.66  E-value=0.02  Score=50.37  Aligned_cols=173  Identities=16%  Similarity=0.168  Sum_probs=111.5

Q ss_pred             HHHHHHhCCC--------CchHHHHHHHHHHHhhHHHHHHHhhh---hHHHhcCccccc---hhHHHHHHHHHHHHHHHH
Q 022888           67 VFERERLNGH--------YGATAFVFGNTFSALPYLALISLIPG---AIVYYLPGLHEG---YQHFIYFVLLLFACMLLV  132 (290)
Q Consensus        67 v~~rE~~~g~--------Y~~~~y~lak~l~~~~~~~~~~~i~~---~i~y~~~g~~~~---~~~f~~~~l~~~l~~~~~  132 (290)
                      ++.+|+++|.        .++..-+.+|.+..+....+..++..   .......|..++   ......+.....+.....
T Consensus        82 ~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (278)
T COG1277          82 LISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVL  161 (278)
T ss_pred             hhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHH
Confidence            3556777776        47888999999998766666555444   223334444443   334667778888889999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccC------CCCCCcccccccccccCHHHHHHHHhHhhhcCC-Ccc
Q 022888          133 ESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRL------PNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG-LKF  205 (290)
Q Consensus       133 ~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~------~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~-~~~  205 (290)
                      .+.+.+++...++...+...+..+.....+..+....      ....|   ....+...+|.++..+......... ...
T Consensus       162 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (278)
T COG1277         162 LSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILLQSGFSD  238 (278)
T ss_pred             HHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhcccccccc
Confidence            9999999999999888887777765555544443321      11111   1123788889888877765444321 000


Q ss_pred             cCCCCHHHHHhhhhcccc-CccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888          206 DNNLDGEQVLRDKWQLQM-GYSKWVDLAILFGMVVFYRLVFLGIIKTVE  253 (290)
Q Consensus       206 ~c~~~g~~~L~~~~~~~~-~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~  253 (290)
                          ++       .+... ....|.++.+++++.+++..++++..++++
T Consensus       239 ----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d  276 (278)
T COG1277         239 ----SI-------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD  276 (278)
T ss_pred             ----cc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                00       00111 113788999999999999999998777654

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=97.64  E-value=0.035  Score=48.29  Aligned_cols=69  Identities=14%  Similarity=0.085  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHhhHHHHHHHhhhhHH-----HhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022888           77 YGATAFVFGNTFSALPYLALISLIPGAIV-----YYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPN  145 (290)
Q Consensus        77 Y~~~~y~lak~l~~~~~~~~~~~i~~~i~-----y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~  145 (290)
                      .+...+++||.+......++..++.....     +...+-+.+...+....+.+++.++....+.+.++....+
T Consensus        85 ~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~  158 (248)
T TIGR03733        85 KSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGM  158 (248)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            37889999999987766666544321221     1221223355677777788888999999999999998875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=97.55  E-value=0.0049  Score=57.19  Aligned_cols=137  Identities=15%  Similarity=0.145  Sum_probs=96.7

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCcccc--ch--hHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 022888           78 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHE--GY--QHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITG  153 (290)
Q Consensus        78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~--~~--~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~  153 (290)
                      ++..+++-|.+......++.++.++.+. ...+++.  ..  +.|+.+|...++...+.....-.+..+.+.+-  ..+.
T Consensus       240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~  316 (382)
T PF12051_consen  240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW  316 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence            8999999999999998888888888777 4455543  22  55888888777766665444444444444333  3344


Q ss_pred             HHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHH
Q 022888          154 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI  233 (290)
Q Consensus       154 ~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i  233 (290)
                      .+..+.+.+-+ -+.|.+-.|. |.+| .+-. |++.+++++....|++..                   . ...+|+++
T Consensus       317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~~~-------------------~-~lg~n~gi  372 (382)
T PF12051_consen  317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDTCK-------------------G-QLGRNYGI  372 (382)
T ss_pred             HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCCCc-------------------c-cccchHHH
Confidence            44555566656 4569999998 7885 5555 999999999888665432                   1 37789999


Q ss_pred             HHHHHHHH
Q 022888          234 LFGMVVFY  241 (290)
Q Consensus       234 L~~~~v~~  241 (290)
                      |++|+++-
T Consensus       373 l~aw~~v~  380 (382)
T PF12051_consen  373 LFAWIVVN  380 (382)
T ss_pred             HHHHHHHH
Confidence            99998764

It is found in bacterial and eukaryotic proteins.

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=97.41  E-value=0.015  Score=49.84  Aligned_cols=162  Identities=15%  Similarity=0.060  Sum_probs=89.7

Q ss_pred             HHHHHhCCC-----CchHHHHHHHHHHHhhHHHHH---HHhhhhHHHhcCcc----ccchhHHHHHHHHHHHHHHHHHHH
Q 022888           68 FERERLNGH-----YGATAFVFGNTFSALPYLALI---SLIPGAIVYYLPGL----HEGYQHFIYFVLLLFACMLLVESL  135 (290)
Q Consensus        68 ~~rE~~~g~-----Y~~~~y~lak~l~~~~~~~~~---~~i~~~i~y~~~g~----~~~~~~f~~~~l~~~l~~~~~~~l  135 (290)
                      |.+|...|.     -+|..|+..+.-.+.+..+..   -.+..+..+.+.+-    -++......+.+.+.+....--..
T Consensus        84 f~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~~F~i  163 (268)
T COG4587          84 FEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLLRFLI  163 (268)
T ss_pred             HHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            344555554     356677766666655544433   11222222222221    123444444444333332222233


Q ss_pred             HHHHHHhc-cchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHH
Q 022888          136 MMIVASLV-PNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQV  214 (290)
Q Consensus       136 g~~is~~~-~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~  214 (290)
                      -..+++.+ .| +.|+.+.........++||.+.|.+-.|+  |.+-+--..|..|....=......             
T Consensus       164 ~f~~~~~aFwt-~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~y~P~~llvG-------------  227 (268)
T COG4587         164 QFTFGLFAFWT-ERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLLYTPVMLLVG-------------  227 (268)
T ss_pred             HHHHHHHHhhc-cchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhhccHHHHHhc-------------
Confidence            33333332 44 34667788888889999999999999998  443366677777765432211111             


Q ss_pred             HhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHh
Q 022888          215 LRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT  251 (290)
Q Consensus       215 L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~  251 (290)
                           ..+.+. .++++++.++|..++-.+.-...|+
T Consensus       228 -----k~s~~~-il~al~v~~~Wl~im~~l~~~lWrr  258 (268)
T COG4587         228 -----KYSGAQ-ILKALLVQIGWLLIMWLLSRWLWRR  258 (268)
T ss_pred             -----cccHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 122233 8899999999999988877665443

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=97.35  E-value=0.017  Score=49.14  Aligned_cols=147  Identities=18%  Similarity=0.191  Sum_probs=89.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHH-HHHHHHhhhchhhhhhhHHHHHHHHhCCCC---
Q 022888            2 YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVA-SYLTFMTIGGFPSFVEDMKVFERERLNGHY---   77 (290)
Q Consensus         2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y---   77 (290)
                      +|++.....-.........++...   .+.+.+...+....+.+++ .+.+..+         -.+.|.+|+++|..   
T Consensus        13 ~r~~~~~~~~~lf~l~~i~if~~a---l~~~~~~l~~~~~gllWi~~lfa~~l~---------~~r~f~~E~e~G~L~~l   80 (215)
T PF03379_consen   13 FRSKEGLLSMLLFFLLVIVIFSFA---LGPDPDLLARVAPGLLWIALLFASLLG---------LNRSFAREYEDGTLEQL   80 (215)
T ss_pred             HccccchHHHHHHHHHHHHHHHhh---cCCchhHHHHHhHHHHHHHHHHHHHHH---------hhHhHHHHHhCCcHHHH
Confidence            466665555555544444444433   3333333333333344443 3333222         12247788888873   


Q ss_pred             -----chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 022888           78 -----GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIIT  152 (290)
Q Consensus        78 -----~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i  152 (290)
                           ++..++++|.+.......+..++...+...+.|.+  ..+...+.+.+.+.+......|.+.++++-+.......
T Consensus        81 ~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~--~~~~~~~~~~l~lgt~gl~~igtl~aal~~~~r~~~~L  158 (215)
T PF03379_consen   81 LLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLP--ISSWPLLLLSLLLGTLGLAAIGTLLAALAAGARGREIL  158 (215)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCHH
Confidence                 57889999999998877777777666666677775  35667777788888888888898888876554444455


Q ss_pred             HHHHHHHHHH
Q 022888          153 GAGIQGLMIL  162 (290)
Q Consensus       153 ~~~~~~~~~l  162 (290)
                      .++...|+.+
T Consensus       159 l~lL~lPl~i  168 (215)
T PF03379_consen  159 LPLLLLPLLI  168 (215)
T ss_pred             HHHHHHHHHH
Confidence            5554444443

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>TIGR01190 ccmB heme exporter protein CcmB

Probab=97.22  E-value=0.034  Score=47.11  Aligned_cols=145  Identities=12%  Similarity=0.090  Sum_probs=85.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHH-HHHHHHhhhchhhhhhhHHHHHHHHhCCCC---
Q 022888            2 YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVA-SYLTFMTIGGFPSFVEDMKVFERERLNGHY---   77 (290)
Q Consensus         2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y---   77 (290)
                      +|++.....-++..++...++..   ..+.+.+..++....+++++ .+....+         -.+.|.+|+++|..   
T Consensus        10 ~r~~~~~~~~llF~l~vi~lf~l---a~gp~~~~l~~~apgilWva~lfa~ll~---------l~rlF~~d~e~g~Le~l   77 (211)
T TIGR01190        10 FRAGGGILNPLWFFLIVVTLFPF---GVGPELKLLSRIAPGIVWVGALLSSLLS---------LDRLFRDDFEDGSLDLL   77 (211)
T ss_pred             HcccchHHHHHHHHHHHHHHHHh---hcCCcHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHhCCcHHHH
Confidence            34444443333333333333322   33444444444444444443 3333322         22367889999873   


Q ss_pred             -----chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 022888           78 -----GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIIT  152 (290)
Q Consensus        78 -----~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i  152 (290)
                           ++...+++|.++......+.-.+..-..-.+.|.+.  .+.....+.+.+.+.....+|.+.++++-+.......
T Consensus        78 ll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt~g~r~~~~L  155 (211)
T TIGR01190        78 MLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALTVGLKRGGLL  155 (211)
T ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence                 688899999999987777666666666556777754  3456777888888888888888888876543333333


Q ss_pred             HHHHHHHH
Q 022888          153 GAGIQGLM  160 (290)
Q Consensus       153 ~~~~~~~~  160 (290)
                      .++...|+
T Consensus       156 l~lL~lPl  163 (211)
T TIGR01190       156 LSLLVLPL  163 (211)
T ss_pred             HHHHHHHH
Confidence            33433333

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>COG1511 Predicted membrane protein [Function unknown]

Probab=96.98  E-value=0.0089  Score=60.54  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=108.1

Q ss_pred             HhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 022888           72 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGII  151 (290)
Q Consensus        72 ~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~  151 (290)
                      ...+.+....|++++.+..+.....+..+.....+++.|+..  .+-+.+++..+...+++..+-..+..++.++.  ..
T Consensus       610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~--~~~~~~~~~~i~~s~~f~~ii~~lv~~~g~~g--~~  685 (780)
T COG1511         610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEV--KSPLLLVLFAIFSSVAFMIIIYLLVSLFGNPG--KF  685 (780)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEecc--CchhHHHHHHHHHHHHHHHHHHHHHHHhCcch--HH
Confidence            677778889999999999999999999888888877777754  34445555555666666666666666666554  44


Q ss_pred             HHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhH
Q 022888          152 TGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDL  231 (290)
Q Consensus       152 i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~  231 (290)
                      +..++++.+...+|-..|.+..|. +.+. +...-|++|++..+......                   .... ..|.++
T Consensus       686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~~~-------------------~~~~-~~~~~~  743 (780)
T COG1511         686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVIGG-------------------PIPS-NLWSGL  743 (780)
T ss_pred             HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhhcc-------------------CchH-HHhhhH
Confidence            666677788888888899999998 6775 99999999997776433211                   1112 378888


Q ss_pred             HHHHHHHHHHHHHH
Q 022888          232 AILFGMVVFYRLVF  245 (290)
Q Consensus       232 ~iL~~~~v~~~~l~  245 (290)
                      +++.++.+++++..
T Consensus       744 ~~~~~~~i~~~~~~  757 (780)
T COG1511         744 LALIGFLILFIIGG  757 (780)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888887743

>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.76  E-value=0.003  Score=42.80  Aligned_cols=47  Identities=21%  Similarity=0.473  Sum_probs=39.5

Q ss_pred             CCHHHHHhhhhccccC-ccchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888          209 LDGEQVLRDKWQLQMG-YSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK  256 (290)
Q Consensus       209 ~~g~~~L~~~~~~~~~-~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~  256 (290)
                      .-|+++|+. .|+..+ ++.|..+++|++++++|.++..++|.+.+..+
T Consensus        11 tlG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~   58 (65)
T PF08370_consen   11 TLGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG   58 (65)
T ss_pred             cHHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            569999999 566544 46899999999999999999999999977543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.72  E-value=0.038  Score=61.22  Aligned_cols=99  Identities=12%  Similarity=-0.009  Sum_probs=72.2

Q ss_pred             hchhhhhhhHHHHH--HHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccc--cchhHHHHHHHHHHHHHHH
Q 022888           56 GGFPSFVEDMKVFE--RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLH--EGYQHFIYFVLLLFACMLL  131 (290)
Q Consensus        56 ~~~~~~~~er~v~~--rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~--~~~~~f~~~~l~~~l~~~~  131 (290)
                      .-+....+||.-=.  -..-+|. ++.+|+++..+.|+..-++..+++.++.+. .+..  .+..++...+++++++.++
T Consensus      1696 sfv~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~-f~~~~~~~~~~l~~~~lll~lyG~a 1773 (2272)
T TIGR01257      1696 SFVLYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIG-FQKKAYTSPENLPALVALLMLYGWA 1773 (2272)
T ss_pred             HHheeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhhhcCcchHHHHHHHHHHHHHH
Confidence            33344566766533  3567888 999999999999998887777766655543 2221  1335676777889999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHH
Q 022888          132 VESLMMIVASLVPNYLTGIITGAGI  156 (290)
Q Consensus       132 ~~~lg~~is~~~~~~~~a~~i~~~~  156 (290)
                      ...+.+++|.+++++..|......+
T Consensus      1774 ~ip~tYl~SflF~~~~~A~~~~~~i 1798 (2272)
T TIGR01257      1774 VIPMMYPASFLFDVPSTAYVALSCA 1798 (2272)
T ss_pred             HHHHHHHHHHhhCCchhHHHHHHHH
Confidence            9999999999999998887654443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.53  E-value=0.19  Score=56.01  Aligned_cols=144  Identities=8%  Similarity=0.040  Sum_probs=96.0

Q ss_pred             HHHHHHhhhchhhhhhhHHHHHHHHhCCC-CchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHH
Q 022888           48 SYLTFMTIGGFPSFVEDMKVFERERLNGH-YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLF  126 (290)
Q Consensus        48 ~~~~~~~~~~~~~~~~er~v~~rE~~~g~-Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~  126 (290)
                      +.+.+.....+..+..||+.=.||...-| -+.+.|++|..+..+...++.+++.+++... ..+ ....+++..++.++
T Consensus       661 la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~-~~~-~~~s~~~~lfl~~~  738 (2272)
T TIGR01257       661 LAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH-GRI-LHYSDPFILFLFLL  738 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-Cce-eecCChHHHHHHHH
Confidence            33344444666777888888778866544 2789999999999887776665554444321 122 23456778888889


Q ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccc-cCCCCCCcccccccccccCHHHHHHHH
Q 022888          127 ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFF-RLPNDLPHPFWKYPLYYIAFHKYAYQG  194 (290)
Q Consensus       127 l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~-~~~~~~p~~~w~~~l~~isP~~y~~~~  194 (290)
                      ++.++..+++.++|+++.+...|..++.++.....+--.+. .-.+.++. ...+.+.-+||.-.++..
T Consensus       739 ~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~-~~~~~~sL~sp~af~~g~  806 (2272)
T TIGR01257       739 AFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTA-DLKTAVSLLSPVAFGFGT  806 (2272)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCH-HHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999888888766544322211 22344443 223336777787666543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function

Probab=95.88  E-value=0.97  Score=38.61  Aligned_cols=123  Identities=13%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             HHHHHhCCCC--------chHHHHHHHHHHH-hhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 022888           68 FERERLNGHY--------GATAFVFGNTFSA-LPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI  138 (290)
Q Consensus        68 ~~rE~~~g~Y--------~~~~y~lak~l~~-~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~  138 (290)
                      +.++-++|..        +...+...+-+.. ....++..++.........+++.+..++..+.+.+.+..+...++..+
T Consensus        54 i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~  133 (229)
T PF06182_consen   54 ISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFI  133 (229)
T ss_pred             HhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666663        4555555555443 233333444333344444577777888888888888888888888888


Q ss_pred             HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHH
Q 022888          139 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQG  194 (290)
Q Consensus       139 is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~  194 (290)
                      ++.++==......+.   .....+++|...|.+-.|+ +.+..+.++.|..+....
T Consensus       134 ~~~laFw~~~~~~~~---~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~  185 (229)
T PF06182_consen  134 IGLLAFWFTESWGLS---YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYV  185 (229)
T ss_pred             HHHHHHHHhcchHHH---HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHH
Confidence            777542222222222   2334448999999999998 555545555888766543

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=95.41  E-value=1.5  Score=41.14  Aligned_cols=77  Identities=18%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHhhhhHHH---------hcCc--cccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhccc
Q 022888           78 GATAFVFGNTFSALPYLALISLIPGAIVY---------YLPG--LHEGYQHFIYFVLLLFACM-LLVESLMMIVASLVPN  145 (290)
Q Consensus        78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y---------~~~g--~~~~~~~f~~~~l~~~l~~-~~~~~lg~~is~~~~~  145 (290)
                      |+..++.+|++......+++..++....+         ...+  +......+..+.+...+.. +...+++.+++..+++
T Consensus       228 Sr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~~  307 (407)
T COG1668         228 SRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAGS  307 (407)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            89999999999999999888666655552         1111  1223334444444444444 4455588999999999


Q ss_pred             hHHHHHHHH
Q 022888          146 YLTGIITGA  154 (290)
Q Consensus       146 ~~~a~~i~~  154 (290)
                      .+.|+....
T Consensus       308 ~k~aq~~~~  316 (407)
T COG1668         308 IKEAQTLIS  316 (407)
T ss_pred             HHHHHHHhh
Confidence            988887666

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=95.06  E-value=1.6  Score=35.95  Aligned_cols=87  Identities=26%  Similarity=0.365  Sum_probs=48.9

Q ss_pred             HHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhHH---HhcCcc-ccchhH---H-HHHHHHHHHHHHH
Q 022888           68 FERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIV---YYLPGL-HEGYQH---F-IYFVLLLFACMLL  131 (290)
Q Consensus        68 ~~rE~~~g~Y--------~~~~y~lak~l~~~~~~~~~~~i~~~i~---y~~~g~-~~~~~~---f-~~~~l~~~l~~~~  131 (290)
                      +.+|+++|.+        ++..++.+|.+.......+..++...+.   ..+.+. +.+...   . ....+...+....
T Consensus        70 ~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
T PF12730_consen   70 FSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLF  149 (232)
T ss_pred             HHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence            4556666653        7999999999998776666555432222   222332 223222   2 2333444444444


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHH
Q 022888          132 VESLMMIVASLVPNYLTGIITGAG  155 (290)
Q Consensus       132 ~~~lg~~is~~~~~~~~a~~i~~~  155 (290)
                      ...+ .+++...+|...+..+...
T Consensus       150 ~~~~-~~i~~~~~~~~~~i~~~~~  172 (232)
T PF12730_consen  150 ISLL-LFISSLFRNSIVAIIISIL  172 (232)
T ss_pred             HHHH-HHHHHHHhhHHHHHHHHHH
Confidence            5555 7888888886665443333

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=94.06  E-value=3  Score=35.03  Aligned_cols=93  Identities=15%  Similarity=0.133  Sum_probs=67.9

Q ss_pred             HHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 022888           67 VFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI  138 (290)
Q Consensus        67 v~~rE~~~g~Y--------~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~  138 (290)
                      .|++|++||.-        ....-+++|+++....+.+.-++..-+.+.+.+.+  ...+....+++.+.+.....+|..
T Consensus        70 lF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga~  147 (221)
T COG2386          70 LFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGAV  147 (221)
T ss_pred             HHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHHH
Confidence            68999999974        45666889999998877777777777777778775  466778888888888888888888


Q ss_pred             HHHhccchHHHHHHHHHHHHHHH
Q 022888          139 VASLVPNYLTGIITGAGIQGLMI  161 (290)
Q Consensus       139 is~~~~~~~~a~~i~~~~~~~~~  161 (290)
                      -++++-+....-...+++..|..
T Consensus       148 gaALtv~lrrgglLl~vlvlPl~  170 (221)
T COG2386         148 GAALTVGLRRGGLLLSVLVLPLI  170 (221)
T ss_pred             HHHHHhcCccCCchhhHHHHHHH
Confidence            87776555544444444444443

>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.61  E-value=4.1  Score=34.75  Aligned_cols=145  Identities=17%  Similarity=0.162  Sum_probs=91.3

Q ss_pred             HHHHhCCC--------CchHHHHHHHHHHHhhHHHHHHHhhhhHHHh---cCccccc--hhHHHHHHHHHHHHHHHHHHH
Q 022888           69 ERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYY---LPGLHEG--YQHFIYFVLLLFACMLLVESL  135 (290)
Q Consensus        69 ~rE~~~g~--------Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~---~~g~~~~--~~~f~~~~l~~~l~~~~~~~l  135 (290)
                      +-|+++|.        ++.+-.+++|...-+....+..++.....+.   ..|...+  ...++.....-++.++...++
T Consensus        76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l  155 (239)
T COG4200          76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL  155 (239)
T ss_pred             HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            55777776        4678889999999887776665544433332   2233322  344555566667777777788


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHH
Q 022888          136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVL  215 (290)
Q Consensus       136 g~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L  215 (290)
                      =...+...+|...|..++...  |..+-    ..-+..|.  |   +.|-+|..    .+.                   
T Consensus       156 Q~wLsm~fknf~~al~igI~l--~a~fv----a~~~s~~~--~---~PW~~pi~----~~~-------------------  201 (239)
T COG4200         156 QFWLSMRFKNFAVALVIGIFL--PALFV----ASAESLPV--W---LPWASPIL----PMF-------------------  201 (239)
T ss_pred             HHHHHHHHHhhhHhHHHHHhH--HHHHH----HhccccCc--c---ccchhhhh----hhh-------------------
Confidence            888899999998888777665  33222    23455675  3   67777764    111                   


Q ss_pred             hhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888          216 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE  253 (290)
Q Consensus       216 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~  253 (290)
                            +.+.+.-.++..+.+..+++.+.+.+.+++++
T Consensus       202 ------~~~l~v~~~i~~~~v~~ll~~l~s~l~~~r~~  233 (239)
T COG4200         202 ------SGSLSVETGILFLGVLALLFLLSSFLFFKRKK  233 (239)
T ss_pred             ------ccccccchhHHHHHHHHHHHHHHHHHHHhhhc
Confidence                  11112334666777777788888877777543

>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]

Probab=92.98  E-value=8  Score=36.23  Aligned_cols=28  Identities=29%  Similarity=0.399  Sum_probs=19.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022888            4 DLGYYWFRLGVYVLLGIGLATVFSNLGT   31 (290)
Q Consensus         4 ~~~~~~~~~~~~~~~~li~G~~f~~~~~   31 (290)
                      |+..++.=.+-..+.|+++|.+|-++++
T Consensus       296 ~Rg~lI~W~v~~fllglvygs~fg~l~~  323 (536)
T COG3559         296 NRGSLILWTVGLFLLGLVYGSVFGGLGD  323 (536)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3444555556668889999999987764

>KOG4255 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.61  E-value=22  Score=32.43  Aligned_cols=58  Identities=16%  Similarity=0.081  Sum_probs=32.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhccc--chhhccccccccccccccCC-CCCCCccC
Q 022888          227 KWVDLAILFGMVVFYRLVFLGIIKTVEKMKP--VVKAFMSVPMKQTTQIMENP-CATPPQED  285 (290)
Q Consensus       227 ~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  285 (290)
                      .-.-+.++.++.+.. ..++++|.+.-+.++  ..++++..++-++++.+||- +.+|.++|
T Consensus       189 ~s~FFl~l~~~~~~a-laAF~vL~r~~~~~~~s~~~~~~p~~~l~si~~~ee~~~~~~~~~d  249 (439)
T KOG4255|consen  189 VSTFFLALFAFTCAA-LAAFFVLYRLGAHWPSSTTGELEPQLQLGSIGAEEETDESSPLQED  249 (439)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCCCCCCCCccccCCCCcccccccCCCCCCC
Confidence            334455555555444 444555554433333  24777777888888888877 44444443

>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family

Probab=84.21  E-value=26  Score=30.16  Aligned_cols=113  Identities=14%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             HHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhh----hHHHhcCccc-cchhHHHHHHHHHHHHHHHHHHH
Q 022888           69 ERERLNGHY--------GATAFVFGNTFSALPYLALISLIPG----AIVYYLPGLH-EGYQHFIYFVLLLFACMLLVESL  135 (290)
Q Consensus        69 ~rE~~~g~Y--------~~~~y~lak~l~~~~~~~~~~~i~~----~i~y~~~g~~-~~~~~f~~~~l~~~l~~~~~~~l  135 (290)
                      ++|+++|.|        +....++||.+.-....++..++..    ...+ +.+.. .+...++...+..++.++....+
T Consensus        64 ~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~-l~~~~~~~~~~~~~~~l~~~i~sl~~i~l  142 (241)
T TIGR03732        64 KKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGF-VIPPSNISIGQALLASLLIWLTSLWQIPL  142 (241)
T ss_pred             HHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            556665554        6788899999987666555544433    2333 22322 23345555566666666667777


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhH
Q 022888          136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMF  196 (290)
Q Consensus       136 g~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~  196 (290)
                      -+.++.-. +    +.....+.....+..|.+...+  +  .|     ++.|..|..+.+.
T Consensus       143 ~l~ls~~~-g----~~~si~ig~~~~li~g~~~~~~--~--~w-----~~~P~s~~~rl~~  189 (241)
T TIGR03732       143 CLFLARKF-G----MFVSILVNLVLGLIFGIVLATK--S--FW-----WLFPYSWPSRLMC  189 (241)
T ss_pred             HHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHcc--C--Ce-----EEechHHHHHHHh
Confidence            77776443 2    2221222222233345553322  2  23     3577777777774

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=83.65  E-value=13  Score=38.61  Aligned_cols=99  Identities=15%  Similarity=0.092  Sum_probs=73.6

Q ss_pred             hhhhhhHHHHH--HHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH
Q 022888           59 PSFVEDMKVFE--RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLM  136 (290)
Q Consensus        59 ~~~~~er~v~~--rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg  136 (290)
                      .....||..-.  .+.-+|+ ++.+|+++..+.+....++..++...+++.. | .....+.....+...+.......+.
T Consensus       317 ~~li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f-~-~~~~~~~~~~~~~~~l~~~s~i~l~  393 (885)
T KOG0059|consen  317 LSLILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIF-G-FFAGNNTVIILLLLLLYIRSAIPLT  393 (885)
T ss_pred             hHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhee-e-cccccchHHHHHHHHHHHHHHHHHH
Confidence            33455555543  4577888 9999999999999998888877766666543 3 2345567777888888889999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHH
Q 022888          137 MIVASLVPNYLTGIITGAGIQGLM  160 (290)
Q Consensus       137 ~~is~~~~~~~~a~~i~~~~~~~~  160 (290)
                      ++.+.+++.+..+..+..++....
T Consensus       394 y~~s~~f~~~~~~~v~~~i~~~~s  417 (885)
T KOG0059|consen  394 YILSFIFSKESTASVILSIYNLIS  417 (885)
T ss_pred             HHHHHHhcCCcCceeehhhHHHHH
Confidence            999999998888877665554443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00