Citrus Sinensis ID: 022896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEcccHHHHHHHHHccccccEEEEcccccccHHHHHEEccccccccccEEccccccEEcEEEEEEEEEEccccEEEccccEEEEccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEcccEEEcccccccccEEEcccccEEEEcEEEEccccccccHHHHcccccccccccccEEEcccccccccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEcccHHHHHHHHHcccccEEEEEcccccEccccccHHHHcccccccccccccccccccEEEEEEEEEEccccEEEEEcccEEcccEEEEEcccccccccccHHHHHHHHHcHHHHHHcccEEEEcccHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEEccEEEEEEccccEEEEEEccccEEcccEEEEEEcccccHHHHHHHcccccccccccEEEcccccccccccEEEEEccEEccccccccccccc
Coil and Loop (DISEMBL)
mesrrqqqsegknkrVVVIGGGVAGSLVAKSLqfsadvtlidpkeyFEITWASLRAMvepsfgkrsvinhtdylvngrivaspainitenevltaEGRRVVYDYLVIAtghkdpvpktrTERLNQYQAENQKIKSARSILivgggptgveLAGEiavdfpekkvTLVHKGSRllefigpkagdktrdWLISKKVDvklgervnldsvsegsdtyltstgdtinadchflctgkpvgsdwlkdtilkdsldthgmlmvdenlrvkgqknifaigditdirvsasmifpqvf
Flexible Loop (DISEMBL)
mesrrqqqsegknkrvvvIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIatghkdpvpktrTERLNQYQAenqkiksarsILIVGGGPTGVELAGEIAVDFPEKKVTLVHkgsrllefigpkagdktrdwLISKkvdvklgervnldsvsegsdTYLTSTGDTINADCHFLCTGkpvgsdwlKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Low Complexity Region (SEG)
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered region (IsUnstruct)
**************RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH***********************SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF****
Disordered Region (DISOPRED)
****************VVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered Region (DISEMBL)
*************KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered Region (DISPRO)
***********KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q54NS9	408	Apoptosis-inducing factor	yes	no	0.9	0.639	0.345	2e-34
Q54NS8	387	Apoptosis-inducing factor	no	no	0.9	0.674	0.335	3e-34
B5FXE5	373	Apoptosis-inducing factor	yes	no	0.813	0.632	0.296	2e-24
Q6GLW8	374	Apoptosis-inducing factor	N/A	no	0.831	0.644	0.312	3e-22
B4F6I3	374	Apoptosis-inducing factor	yes	no	0.831	0.644	0.305	8e-22
Q9BRQ8	373	Apoptosis-inducing factor	yes	no	0.813	0.632	0.320	1e-21
A5PJM4	373	Apoptosis-inducing factor	yes	no	0.824	0.640	0.312	5e-20
Q8BUE4	373	Apoptosis-inducing factor	yes	no	0.813	0.632	0.304	5e-19
P52923	378	Apoptosis-inducing factor	yes	no	0.768	0.589	0.284	3e-13
B5FG80	381	Nitric oxide reductase Fl	yes	no	0.6	0.456	0.308	2e-10

>sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRV++IG G  GS VAK L  + +VT+++ K+ F  + AS+RA+VEP   K+  I +   
Sbjct: 28  KRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYDKL 87

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG------HKDPVPK-TRTERLNQY 126
           L NG+ +    I I+   V   +G+ + +DYLVIATG       K P+ K + TE  N Y
Sbjct: 88  LKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFNYY 147

Query: 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEFIGPK 180
           +  +++IK A+SILIVGGG  G E+ GEI   +P       KK+T+VH G++L   +  K
Sbjct: 148 KDISEQIKQAKSILIVGGGSVGCEVVGEIINKYPIKNKELAKKITIVHSGNKL---VSSK 204

Query: 181 AGDKTRDW----LISKKVDVKLGERVNL-DSVSE------------GSDTYLTSTGDTIN 223
             +K  +     +  + V V L +R+ + D + +               TY T  G +I 
Sbjct: 205 TNNKFNNLINESMKKRNVSVILNDRIEIPDDIKQCFINQTSPNFQVSLKTYKTKNGLSIE 264

Query: 224 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
           +D      G  + S+  K T   + ++  G + V+++ +V+G  NIFAIGDITD 
Sbjct: 265 SDFVIWTIGIKLNSESYK-TNFSNEINEIGQIKVNQSCQVQGYDNIFAIGDITDF 318

Putative FAD-dependent oxidoreductase.
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 148/295 (50%), Gaps = 34/295 (11%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRV++IGGG  G  VAK L    +VT+++ K+ F  +  S+RA+VEP   K+  I +   
Sbjct: 6   KRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYDKL 65

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-------KTRTERLNQY 126
           L NG+ +    I I+       +G+ + +DYLVIATG     P       K+ +E LN +
Sbjct: 66  LKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILNYF 125

Query: 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEFIGPK 180
           Q  +Q+IK A+SILIVGGG    EL  EI   +P       KK+T+VH GS+L   + PK
Sbjct: 126 QNFSQQIKQAKSILIVGGGAVACELVSEIVEKYPVKDSELVKKITIVHSGSKL---VNPK 182

Query: 181 AGDKTRD----WLISKKVDVKLGERVNL-------------DSVSEGSDTYLTSTGDTIN 223
             DK  +     +  + V+V L +R+ +              ++   S  Y T  G  I 
Sbjct: 183 MNDKFTNVVSKAMKKRNVEVILNDRITMPDEIKANLLNQTSPNIQISSQNYTTEKGVPIQ 242

Query: 224 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
           AD      G    S+  +     + ++  G L V+ + +V+G  N+FAIGD TD 
Sbjct: 243 ADLIIWTVGIKTNSESYQSH-FSNVINESGQLKVNLSCQVQGYNNVFAIGDCTDF 296

Putative FAD-dependent oxidoreductase.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 135/256 (52%), Gaps = 20/256 (7%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D ++ F    A+LRA VE  F K++ I+++    D    G++VA   I+    +V+ +
Sbjct: 38  LVDVRDAFHHNVAALRAAVESGFAKKTFISYSVTFGDSFRQGKVVA---IDPGRQQVVLS 94

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQAENQKIKSARSILIVGGGPTGV 149
           +G  + Y +L++ATG   P P    + ++       Y+   ++I+ ++ IL+VGGG  GV
Sbjct: 95  DGEELHYSHLILATGSDGPFPGKFNQVIDMESAIQTYEDMVKEIEKSQRILVVGGGAAGV 154

Query: 150 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV----NL 204
           E+A EI  ++P K++ L+H  + L +  + P      ++ L+ K V + L E+V    NL
Sbjct: 155 EMAAEIKTEYPGKEIILIHSKTALADVELLPSVRQVVKEILLRKGVRLLLSEKVSDIENL 214

Query: 205 DSVSEGSDTYL-TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 263
                  D  + T  G  +  D   LCTG  + S         D + + G L V+++L++
Sbjct: 215 RPNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINSSAYA-AAFGDKMASDGALKVNKHLQL 273

Query: 264 KGQKNIFAIGDITDIR 279
           +G +NI+AIGD  D++
Sbjct: 274 EGYENIYAIGDCADLK 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Taeniopygia guttata (taxid: 59729)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q6GLW8|AIFM2_XENLA Apoptosis-inducing factor 2 OS=Xenopus laevis GN=aifm2 PE=2 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 21/262 (8%)

Query: 34  FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVN----GRIVASPAINITE 89
           F     L+D K+ F    A+LRA VE  F +++ I++ D   +    G++V    IN+  
Sbjct: 32  FGIPFLLVDMKDAFHHNVAALRACVESGFARKTFISYKDSFHDSFKQGKVVG---INLQT 88

Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----EN--QKIKSARSILIVG 143
             V+      + + +L+IATG   P P    E +++ QA    EN  ++I+ A+ +++VG
Sbjct: 89  QLVILESNEELSFSHLIIATGSNGPFPGKFNEVISKDQAIQIYENLVEEIQKAKHVVVVG 148

Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV 202
           GG  GVE+A E+  D+PEK+VTL+H    L +  + P      ++ L+ K V + L ++V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLIHSKIALADVQLQPSVRRTVKEILLRKGVRLILAQKV 208

Query: 203 -NLDSVS-----EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 256
            NLD V+     E  +  L    + +N D    C G  V S   + + L D +   G L+
Sbjct: 209 TNLDQVTPNVAQENMELQLDKDSEVVNCDLVLCCIGLKVSSSSYR-SALGDKMAEDGSLI 267

Query: 257 VDENLRVKGQKNIFAIGDITDI 278
           V++ L+V+G +N++A+GD   I
Sbjct: 268 VNDYLQVQGHENVYAVGDCAYI 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B4F6I3|AIFM2_XENTR Apoptosis-inducing factor 2 OS=Xenopus tropicalis GN=aifm2 PE=2 SV=1

 Score =  104 bits (259), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 134/262 (51%), Gaps = 21/262 (8%)

Query: 34  FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL----VNGRIVASPAINITE 89
           F     L+D K+ F    A+LRA VE  F +++ I++ D      + G++V    IN+  
Sbjct: 32  FGIPFVLVDLKDAFHHNVAALRASVESGFARKTFISYKDTFQDNFIQGKVVG---INLQT 88

Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPK------TRTERLNQYQAENQKIKSARSILIVG 143
             V+      + + +L+IATG   P P       ++ + +  Y+   ++I+ A+ +++VG
Sbjct: 89  QRVILESNEELQFSHLIIATGSNGPFPGKINNVISKDQAIQVYEDLVKEIQKAKHVVVVG 148

Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV 202
           GG  GVE+A E+  D+PEK+VTLVH    L +  + PK     ++ L+SK V + L ++V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLVHSKVALADVQLQPKVRRTVKEILLSKGVRLILAQKV 208

Query: 203 -NLDSVS-----EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 256
            NLD V+     E +   L    + +  D    CTG  + S         D L   G L+
Sbjct: 209 TNLDQVTSNVAQENTVLQLDKNSEVVTCDLVLCCTGYKISSSSYSSA-FGDKLAEDGALI 267

Query: 257 VDENLRVKGQKNIFAIGDITDI 278
           V++ L+V+G  N++A+GD   I
Sbjct: 268 VNDYLQVQGHANVYAVGDCAYI 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9BRQ8|AIFM2_HUMAN Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=1 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 135/256 (52%), Gaps = 20/256 (7%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D K+ F    A+LRA VE  F K++ I+++    D    G +V    I++    VL  
Sbjct: 39  LVDMKDSFHHNVAALRASVETGFAKKTFISYSVTFKDNFRQGLVVG---IDLKNQMVLLQ 95

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQAENQKIKSARSILIVGGGPTGV 149
            G  + + +L++ATG   P P    E  +Q      Y+   ++++ +R I++VGGG  GV
Sbjct: 96  GGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGV 155

Query: 150 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV 207
           E+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVKEILLRKGVQLLLSERVSNLEEL 215

Query: 208 SEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 263
                  Y+   T  G  +  +   LCTG  + S   +    +  L + G L V+E+L+V
Sbjct: 216 PLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYRKA-FESRLASSGALRVNEHLQV 274

Query: 264 KGQKNIFAIGDITDIR 279
           +G  N++AIGD  D+R
Sbjct: 275 EGHSNVYAIGDCADVR 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A5PJM4|AIFM2_BOVIN Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 139/253 (54%), Gaps = 14/253 (5%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT-DYLVNGRIVASPAINITENEVLTAEGR 98
           L+D K+ F    A+LRA VE  F K++ I+++  +  N R      I++    VL  +G+
Sbjct: 39  LVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDGQ 98

Query: 99  RVVYDYLVIATGHKDPVP------KTRTERLNQYQAENQKIKSARSILIVGGGPTGVELA 152
            + + +L++ATG     P       ++   +  Y+    +++ ++SI++VGGG  GVE+A
Sbjct: 99  ALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYEDMVTQVQRSQSIVVVGGGSAGVEMA 158

Query: 153 GEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDS--VS 208
            EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL++  V+
Sbjct: 159 AEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVKEILLRKGVQLLLSERVSNLEALPVN 218

Query: 209 EGSDTYLTST--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 266
           E  +     T  G  ++A+   +C G  + S   + +   D L ++G L V+E L+V+G 
Sbjct: 219 ERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYR-SAFGDRLASNGALRVNEYLQVEGY 277

Query: 267 KNIFAIGDITDIR 279
            +I+AIGD  D+R
Sbjct: 278 SHIYAIGDCADVR 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8BUE4|AIFM2_MOUSE Apoptosis-inducing factor 2 OS=Mus musculus GN=Aifm2 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 134/256 (52%), Gaps = 20/256 (7%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D K+ F    A+LRA VE  F K++ I+++    D    G+++    I++    VL  
Sbjct: 39  LVDMKDSFHHNVAALRASVESGFAKKTFISYSATFKDNFRQGKVIG---IDLKNRMVLLQ 95

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGV 149
            G  + + +L++ATG   P P    E       +  Y+   ++I+ ++ I++VGGG  GV
Sbjct: 96  GGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGV 155

Query: 150 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV 207
           E+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILLRKGVQLLLSERVSNLEEL 215

Query: 208 SEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 263
                  Y+   T  G  +  +   +C G  + S   + +  +  L ++G L V+E L+V
Sbjct: 216 PRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYR-SAFESRLASNGALKVNEFLQV 274

Query: 264 KGQKNIFAIGDITDIR 279
           +G  NI+AIGD  D +
Sbjct: 275 EGYSNIYAIGDCADTK 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death (By similarity). May contribute to genotoxin-induced growth arrest.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P52923|AIF1_YEAST Apoptosis-inducing factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIF1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 51/274 (18%)

Query: 38  VTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNG-RIVASPAINITENEVLTAE 96
           + L+    Y     +++R  V   + K S++   + L +G  ++   A +  + EV+   
Sbjct: 34  IKLVTASNYVYFLPSAVRLTVSKDYTK-SILPLKNVLDSGIEVIKDTAASFDDKEVVLGS 92

Query: 97  GRRVVYDYLVIATGHK--DPVPKTRTERLNQ---YQAENQKIKSARSILIVGGGPTGVEL 151
            R + +D LV+ATG K  DP+  T T   N    ++ E  +I  A  IL +GGG    EL
Sbjct: 93  DRAIKFDILVLATGSKWADPIGSTYTFGDNYKEYFEREASRISDADHILFLGGGFVNCEL 152

Query: 152 AGEIAVDFPE------KKVTLVHKGSRLLEFIGPKAG---DKTR----DWLISKKVDVKL 198
           AGE+   + E      K+++++H   +LL    P +G   D  R    D+L    + + L
Sbjct: 153 AGELLFKYLEEIRSGKKRISIIHNSDKLL----PDSGLYNDTLRKNVTDYLSKNGITLYL 208

Query: 199 GE-RVNLDS------VSEGSDTYLTSTGDTINADCHFLCTG----KPVGSDWLKDTILKD 247
                +LD+      + EGS  Y       I+AD  +   G     PV S       + D
Sbjct: 209 NTVGASLDTSPKRIFLGEGSSKY-------IDADLIYRGVGISPNVPVNS-------ISD 254

Query: 248 SLDTHGMLMVDENLRVKGQK--NIFAIGDITDIR 279
             D  G + V++N RVK  +  N+FAIGD+T+ R
Sbjct: 255 LCDKKGFIQVEKNFRVKAVEAGNVFAIGDVTNFR 288

Putative FAD-dependent oxidoreductase involved in the resistance to cercosporin and other singlet oxygen-generating photosensitizers. Translocates from mitochondria to the nucleus under apoptotic conditions, where it degrades DNA and induces apoptosis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B5FG80|NORW_VIBFM Nitric oxide reductase FlRd-NAD(+) reductase OS=Vibrio fischeri (strain MJ11) GN=norW PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 95/211 (45%), Gaps = 37/211 (17%)

Query: 89  ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE---------RLNQYQAENQKIKSARSI 139
           E + +TA G +  YD LV+ATG    VP    +          L ++ A  QKI  A++I
Sbjct: 87  EQQTITANGEQYTYDKLVLATGSHTFVPPFHGDGCEDILTLNSLKEFSAIQQKILDAKNI 146

Query: 140 LIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFIGPKAGDKTRDWLISKKV 194
           L++GGG  G ELA ++A     K VTLV   S LL     +FI     +  ++    K V
Sbjct: 147 LVIGGGLIGTELAMDLA--NAGKMVTLVEPNSHLLANMMPDFISLPLENACKE----KGV 200

Query: 195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 254
            V L + V   +V++    Y  +T     ++CH       + +  LK       L T   
Sbjct: 201 TVNLSDCV--QAVNKQEQGYRVTT-----SNCHSYYVDCVISAAGLKP---NTQLATEAN 250

Query: 255 LM------VDENLRVKGQKNIFAIGDITDIR 279
           LM      VD NL+     NI+A+GD  +I 
Sbjct: 251 LMVNRGIVVDSNLQTSA-NNIYALGDCAEIE 280

One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase.

Vibrio fischeri (strain MJ11) (taxid: 388396)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
224059230	362	predicted protein [Populus trichocarpa]	0.920	0.737	0.750	1e-114
225436124	368	PREDICTED: apoptosis-inducing factor hom	0.920	0.725	0.771	1e-112
359487025	365	PREDICTED: apoptosis-inducing factor hom	0.906	0.720	0.732	1e-111
147860316	365	hypothetical protein VITISV_040675 [Viti	0.906	0.720	0.732	1e-111
356542786	361	PREDICTED: apoptosis-inducing factor hom	0.910	0.731	0.723	1e-110
15229901	367	FAD/NAD(P)-binding oxidoreductase family	0.944	0.746	0.693	1e-110
297818884	367	pyridine nucleotide-disulfide oxidoreduc	0.944	0.746	0.693	1e-109
255565779	363	apoptosis-inducing factor, putative [Ric	0.910	0.727	0.722	1e-109
356539209	359	PREDICTED: apoptosis-inducing factor hom	0.927	0.749	0.698	1e-109
297812335	365	pyridine nucleotide-disulfide oxidoreduc	0.920	0.731	0.696	1e-106

>gi|224059230|ref|XP_002299779.1| predicted protein [Populus trichocarpa] gi|222847037|gb|EEE84584.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/269 (75%), Positives = 230/269 (85%), Gaps = 2/269 (0%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           + +R+VVIGGG+AGSL+AKSLQF ADVT IDPKEYFEITWA+LR MVEPSFG+RSVINH 
Sbjct: 7   EKRRLVVIGGGIAGSLLAKSLQFHADVTFIDPKEYFEITWANLRTMVEPSFGERSVINHR 66

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQ 131
           DY  NGRIV S AI ITE EVLTA+   + YDYLVIATGH+DPVPKTR ERL +YQAEN+
Sbjct: 67  DYYTNGRIVTSTAIGITETEVLTADDFSIPYDYLVIATGHRDPVPKTRMERLKEYQAENE 126

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 191
           KIKSA+S+LIVGGGPTGVELAGEI+VDFPEK VTLVH GSRLLEFIGPKA DKT  WL S
Sbjct: 127 KIKSAQSVLIVGGGPTGVELAGEISVDFPEKHVTLVHSGSRLLEFIGPKASDKTLQWLTS 186

Query: 192 KKVDVKLGERVNLDSV--SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL 249
           K+VDVKL +RV+L+SV  S GS  Y T+ G++I ADCHFLCTGKP+GS WL+ TIL  +L
Sbjct: 187 KRVDVKLEQRVDLNSVTDSNGSKIYHTTAGESIRADCHFLCTGKPLGSGWLEGTILNSNL 246

Query: 250 DTHGMLMVDENLRVKGQKNIFAIGDITDI 278
           D+ G LMVDE LRVKG+KNIFAIGDITD+
Sbjct: 247 DSRGRLMVDEYLRVKGRKNIFAIGDITDV 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436124|ref|XP_002278901.1| PREDICTED: apoptosis-inducing factor homolog A [Vitis vinifera] gi|296084033|emb|CBI24421.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/267 (77%), Positives = 233/267 (87%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           KN+RVVVIGGGVAGSL+AKSLQF ADVTL+DPKEYFEI WASLRAMVEPSF +RSVINH 
Sbjct: 9   KNRRVVVIGGGVAGSLLAKSLQFHADVTLLDPKEYFEIPWASLRAMVEPSFAERSVINHR 68

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQ 131
           DYL NGRI+ S AIN+T+ EVLTAEGR +VYDYLVIATGH   VP+TRTERL+QY+ EN+
Sbjct: 69  DYLTNGRIITSRAINVTDKEVLTAEGRALVYDYLVIATGHLYSVPRTRTERLSQYETENE 128

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 191
           KI+SA SILI+GGGPTGVEL GEIAVDFPEK+VTLVH GSRL++FIGPKA +KT DWL S
Sbjct: 129 KIRSAGSILIIGGGPTGVELTGEIAVDFPEKEVTLVHNGSRLMQFIGPKASNKTLDWLRS 188

Query: 192 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 251
           K+V+VKL + VNL+SVS+GS TY TS G+TI ADCHFLCTG P+GS WLK+T LKD LD 
Sbjct: 189 KRVEVKLEQSVNLNSVSDGSRTYQTSAGETIEADCHFLCTGSPLGSAWLKETFLKDKLDI 248

Query: 252 HGMLMVDENLRVKGQKNIFAIGDITDI 278
           HG LMVD+NLRVK   NIFAIGDITDI
Sbjct: 249 HGRLMVDKNLRVKDHSNIFAIGDITDI 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487025|ref|XP_002266714.2| PREDICTED: apoptosis-inducing factor homolog A-like [Vitis vinifera] gi|296084446|emb|CBI25005.3| unnamed protein product [Vitis vinifera]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 229/265 (86%), Gaps = 2/265 (0%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRVV++GGG+AGSL+AKSLQF AD+ L+DPKEYFEI WASLRAMVEPSF +R+VINH+DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           L NG++V S A+NI +NEVLT+ G+ + YDYLVIATGH D VPKTRTERL QYQAE++KI
Sbjct: 74  LTNGKLVVSTAVNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLEQYQAESEKI 133

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
           KSA SILIVGGGPTGVELAGEI VDFP+KKVTLVH+GSRLLEFIG KA  K  DWL SKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 194 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG 253
           V+V L + V++++ S+G  TY TS G+TI ADCHF+CTGKP+GS WLKDTILKD+LD HG
Sbjct: 194 VEVLLNQSVDINTASDG--TYQTSGGETIRADCHFVCTGKPIGSSWLKDTILKDNLDGHG 251

Query: 254 MLMVDENLRVKGQKNIFAIGDITDI 278
            L+VD+NLRV+G KN+FAIGDIT I
Sbjct: 252 KLVVDDNLRVRGLKNVFAIGDITAI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860316|emb|CAN79702.1| hypothetical protein VITISV_040675 [Vitis vinifera]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/265 (73%), Positives = 228/265 (86%), Gaps = 2/265 (0%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRVV++GGG+AGSL+AKSLQF AD+ L+DPKEYFEI WASLRAMVEPSF +R+VINH+DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           L NG++V S A NI +NEVLT+ G+ + YDYLVIATGH D VPKTRTERL QYQAE++KI
Sbjct: 74  LTNGQLVVSTAXNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLKQYQAESEKI 133

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
           KSA SILIVGGGPTGVELAGEI VDFP+KKVTLVH+GSRLLEFIG KA  K  DWL SKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 194 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG 253
           V+V L + V++++ S+G  TY TS G+TI ADCHF+CTGKP+GS WLKDTILKD+LD HG
Sbjct: 194 VEVLLNQSVDINTASDG--TYQTSGGETIXADCHFVCTGKPIGSSWLKDTILKDNLDGHG 251

Query: 254 MLMVDENLRVKGQKNIFAIGDITDI 278
            L+VD+NLRV+G KN+FAIGDIT I
Sbjct: 252 KLVVDDNLRVRGLKNVFAIGDITAI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542786|ref|XP_003539846.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/264 (72%), Positives = 224/264 (84%)

Query: 15  RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL 74
           RVV++GGGVAGS+VAKSLQF A VTL+DPKEYFEITWASLR+MVEPSF +RSVINH DY 
Sbjct: 7   RVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRSMVEPSFAERSVINHRDYF 66

Query: 75  VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIK 134
            NG IV S A+N+TE EVLTA+G R+ YDYLVIATGH DP+PK+R ERLNQ++ +NQKIK
Sbjct: 67  TNGDIVTSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKEDNQKIK 126

Query: 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 194
           SA+SILI+GGGPTGVELAGEIAVDFP+KK+TLVHKG+RLLEFIG KAGDKT +WL SK V
Sbjct: 127 SAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFIGAKAGDKTLNWLKSKNV 186

Query: 195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 254
            VKL + V+L++  +G   Y TS G+TI ADCHFLC GKP+ S WLK+T+LK+ LD  G 
Sbjct: 187 VVKLEQSVDLNAFKDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDLDGQGR 246

Query: 255 LMVDENLRVKGQKNIFAIGDITDI 278
           + VDE LRVKG+ NIFAIGDITDI
Sbjct: 247 IKVDEKLRVKGKDNIFAIGDITDI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229901|ref|NP_190005.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|7635464|emb|CAB88427.1| putative protein [Arabidopsis thaliana] gi|21536882|gb|AAM61214.1| unknown [Arabidopsis thaliana] gi|25083044|gb|AAN72037.1| putative protein [Arabidopsis thaliana] gi|30725576|gb|AAP37810.1| At3g44190 [Arabidopsis thaliana] gi|332644353|gb|AEE77874.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/274 (69%), Positives = 229/274 (83%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
           + +   GK KRV+VIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEP+F +
Sbjct: 3   KTESVSGKGKRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAE 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
           RSVINH  YL NGR+V SPA+NIT+ +VLTA+G    YDYLVIATGH D +PKTR E+L+
Sbjct: 63  RSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query: 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 184
           QYQ E++KIKS+ SILIVGGGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct: 123 QYQTEHEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query: 185 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
             DW+ SK+V+V L +RV+L S S+GS TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct: 183 ALDWMKSKRVEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query: 245 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
           LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct: 243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818884|ref|XP_002877325.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323163|gb|EFH53584.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/274 (69%), Positives = 229/274 (83%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
           + +   GK +RVVVIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEPSF +
Sbjct: 3   KTESKSGKGRRVVVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPSFAE 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
           RSVINH  YL NGR+V SPA+NIT+ +V+TA+G    YDYLVIATGH D +PKTR E+L+
Sbjct: 63  RSVINHKKYLQNGRVVTSPAVNITDTDVVTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query: 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 184
           QYQAE +KIKS+ SILIVGGGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct: 123 QYQAEYEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query: 185 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
             DW+ SK+V+V L +RV+L S S+G+ TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct: 183 AFDWMKSKRVEVILNQRVDLSSASDGNKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query: 245 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
           LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct: 243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565779|ref|XP_002523879.1| apoptosis-inducing factor, putative [Ricinus communis] gi|223536967|gb|EEF38605.1| apoptosis-inducing factor, putative [Ricinus communis]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/270 (72%), Positives = 231/270 (85%), Gaps = 6/270 (2%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           +RVVVIGGG+AGSL+AK+LQF A +TL+DPKEYFEITWA+LRA+VEPSF +RSVINH DY
Sbjct: 11  RRVVVIGGGIAGSLIAKNLQFDAHLTLVDPKEYFEITWANLRALVEPSFAERSVINHRDY 70

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
             NGRI+AS A+++T+ +VLTA+G+ + YDYLVIATGH D VPKTRTERL +YQA N+KI
Sbjct: 71  FTNGRIIASSAVDVTDADVLTADGQVIPYDYLVIATGHADSVPKTRTERLTEYQAGNEKI 130

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
           KSA SILIVGGGPTGVELAGEIA DFPEKKVTLVH GSRL+EFIGPKA +KT  WL SK 
Sbjct: 131 KSAHSILIVGGGPTGVELAGEIAADFPEKKVTLVHDGSRLMEFIGPKAANKTLKWLRSKN 190

Query: 194 VDVKLGERVNLDSVSEGSD-----TYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS 248
           V+VKL +RV+L+S++ GSD     TY TS G+TI ADCHFLCTG P+GS WLKDT+LK++
Sbjct: 191 VEVKLEQRVDLNSIT-GSDGNCTKTYHTSAGETIKADCHFLCTGIPLGSAWLKDTVLKNN 249

Query: 249 LDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
           LD +G L VDE LRV+G KNIFAIGDIT+I
Sbjct: 250 LDANGRLEVDEYLRVRGWKNIFAIGDITNI 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539209|ref|XP_003538092.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/269 (69%), Positives = 227/269 (84%)

Query: 10  EGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVIN 69
           E   KRVV++GGGVAGS+VAKSLQF A VTL+DPKEYFEITWASLR MVEPSF +RS+IN
Sbjct: 2   EKDGKRVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRCMVEPSFAERSLIN 61

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAE 129
           H DYL NG I+ S A+N+TE EVLTA+G R+ YDYLVIATGH DP+PK+R ERLNQ++ +
Sbjct: 62  HRDYLTNGDIITSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKED 121

Query: 130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189
           N++IKSA+SILI+GGGPTGVELAGEIAVDFP+KK+TLVHKG+RLLEF+G KAGDKT +WL
Sbjct: 122 NREIKSAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFVGAKAGDKTLNWL 181

Query: 190 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL 249
            SK V VKL + V++++ ++G   Y TS G+TI ADCHFLC GKP+ S WLK+T+LK+ L
Sbjct: 182 KSKNVVVKLEQSVDMNAFTDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDL 241

Query: 250 DTHGMLMVDENLRVKGQKNIFAIGDITDI 278
           D  G + VDE LRVKG+ NIFAIGDITDI
Sbjct: 242 DGQGRIKVDERLRVKGRNNIFAIGDITDI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812335|ref|XP_002874051.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319888|gb|EFH50310.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 220/267 (82%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           + KRVVVIGGG+AGSL AK LQF ADVTLIDPKEYFEITWASLR+MVEP F +R+VI+H 
Sbjct: 10  QGKRVVVIGGGIAGSLAAKLLQFDADVTLIDPKEYFEITWASLRSMVEPKFAERTVIDHK 69

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQ 131
            YL  GR+V SPAINITE++V+T +G  + YDYLVIATGH D  PKTR E+L+ YQAE +
Sbjct: 70  SYLKQGRVVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQEKLSHYQAEYE 129

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 191
           KIKS+ S+LIVGGGP+GVELA EIAVDFPEKKVTLVHKG RLLEF+G KA DK  DWL S
Sbjct: 130 KIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLES 189

Query: 192 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 251
           KKV+V L + V+L S S+G+ TY TS G+TI+ADCHFLC GKP+ S WL  T+LKDSLD 
Sbjct: 190 KKVEVILNQSVDLSSASDGNKTYRTSGGETIHADCHFLCVGKPLSSQWLNGTVLKDSLDG 249

Query: 252 HGMLMVDENLRVKGQKNIFAIGDITDI 278
            G +MVDE LR++G+ N+FAIGDIT+I
Sbjct: 250 KGRVMVDEYLRIRGRSNLFAIGDITNI 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2081373	367	AT3G44190 [Arabidopsis thalian	0.944	0.746	0.693	4.2e-102
TAIR|locus:504956456	365	AT5G22140 "AT5G22140" [Arabido	0.951	0.756	0.665	3.7e-96
DICTYBASE|DDB_G0286241	397	aifD "putative apoptosis induc	0.896	0.654	0.346	2.1e-36
UNIPROTKB|Q9BRQ8	373	AIFM2 "Apoptosis-inducing fact	0.906	0.705	0.323	6.9e-31
UNIPROTKB|A5PJM4	373	AIFM2 "Apoptosis-inducing fact	0.906	0.705	0.316	3.8e-30
RGD|1304964	373	Aifm2 "apoptosis-inducing fact	0.896	0.697	0.313	2.1e-29
UNIPROTKB|E1BR24	373	AIFM2 "Uncharacterized protein	0.9	0.699	0.304	4.4e-29
MGI|MGI:1918611	373	Aifm2 "apoptosis-inducing fact	0.896	0.697	0.309	7.1e-29
DICTYBASE|DDB_G0285005	387	aifB "putative apoptosis induc	0.817	0.612	0.334	1.9e-28
UNIPROTKB|F1SUD4	373	AIFM2 "Uncharacterized protein	0.941	0.731	0.305	3.1e-28

TAIR|locus:2081373 AT3G44190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 190/274 (69%), Positives = 229/274 (83%)

Query:     5 RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
             + +   GK KRV+VIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEP+F +
Sbjct:     3 KTESVSGKGKRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAE 62

Query:    65 RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
             RSVINH  YL NGR+V SPA+NIT+ +VLTA+G    YDYLVIATGH D +PKTR E+L+
Sbjct:    63 RSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query:   125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 184
             QYQ E++KIKS+ SILIVGGGP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct:   123 QYQTEHEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query:   185 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
               DW+ SK+V+V L +RV+L S S+GS TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct:   183 ALDWMKSKRVEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query:   245 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
             LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct:   243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:504956456 AT5G22140 "AT5G22140" [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 185/278 (66%), Positives = 221/278 (79%)

Query:     1 MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEP 60
             ME       +GK  RVVVIGGG+AGSL AK LQF A+VTLIDPKEYFEITWASLR+MVEP
Sbjct:     1 MEGIESGSKQGK--RVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEP 58

Query:    61 SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT 120
              F +R+VINH  YL  GR+V SPAINITE++V+T +G  + YDYLVIATGH D  PKTR 
Sbjct:    59 KFAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQ 118

Query:   121 ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK 180
             E+L+ YQ+E +KIKS+ S+LIVGGGP+GVELA EIAVDFPEKKVTLVHKG RLLEF+G K
Sbjct:   119 EKLSHYQSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQK 178

Query:   181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 240
             A DK  DWL SKKV+V L + V+L S S+G+  Y TS G+TI+AD HFLC GKP+ S WL
Sbjct:   179 AADKASDWLESKKVEVILNQSVDLSSASDGNKIYRTSGGETIHADIHFLCVGKPLSSQWL 238

Query:   241 KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
               T+LKDSLD  G +MVDE LR++G+ N+FA+GDIT+I
Sbjct:   239 NGTVLKDSLDGKGRVMVDEYLRIRGRSNVFAVGDITNI 276

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

DICTYBASE|DDB_G0286241 aifD "putative apoptosis inducing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 95/274 (34%), Positives = 153/274 (55%)

Query:    14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
             K+VV++GGG +GS+VA+ L+    VTLID K++FE T + LR +VEP   K+  I H+ Y
Sbjct:    52 KKVVIVGGGFSGSIVAQKLENDYQVTLIDTKDFFEFTPSILRTIVEPQHVKKIQILHSHY 111

Query:    74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG--HKDPVPKTR---TERLNQYQA 128
             L +  ++    + +   EV+  + R V +DYLVI +G  +  P  ++    + R N  + 
Sbjct:   112 LKHTNVIQKEVLGVQSREVIL-DDRSVEFDYLVINSGSSYNSPFKESSVVSSARANTLRE 170

Query:   129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDW 188
                 I+  + ILI+GGG  GVELA EI   F  K+VT+VH  S+L+     K    T ++
Sbjct:   171 NYYHIRKLKRILIIGGGIVGVELAAEIVDHFKGKEVTIVHSQSKLMNRFPKKTIRYTEEF 230

Query:   189 LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS 248
             L  + V +   ERV    V+    T++T  G  I A+  FLCTG    S+++K++   D+
Sbjct:   231 LQKRGVKLIYNERV----VAHRGQTFITDQGSEIIAEQAFLCTGIAPNSNFIKNSY-PDA 285

Query:   249 LDTHGMLMVDENLRVKGQ---KNIFAIGDITDIR 279
             +  +G +  ++ L++ G    +NIF  GD+  +R
Sbjct:   286 ISENGYIKANDQLQMAGTTFYRNIFVSGDVLHVR 319

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9BRQ8 AIFM2 "Apoptosis-inducing factor 2" [Homo sapiens (taxid:9606)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 90/278 (32%), Positives = 146/278 (52%)

Query:    16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT-DY 73
             VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F K++ I+++  +
Sbjct:    14 VVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVETGFAKKTFISYSVTF 73

Query:    74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQ------YQ 127
               N R      I++    VL   G  + + +L++ATG   P P    E  +Q      Y+
Sbjct:    74 KDNFRQGLVVGIDLKNQMVLLQGGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYE 133

Query:   128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTR 186
                ++++ +R I++VGGG  GVE+A EI  ++PEK+VTL+H    L +  + P    + +
Sbjct:   134 DMVRQVQRSRFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVK 193

Query:   187 DWLISKKVDVKLGERV-NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLK 241
             + L+ K V + L ERV NL+ +       Y+   T  G  +  +   LCTG  + S   +
Sbjct:   194 EILLRKGVQLLLSERVSNLEELPLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYR 253

Query:   242 DTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
                 +  L + G L V+E+L+V+G  N++AIGD  D+R
Sbjct:   254 KAF-ESRLASSGALRVNEHLQVEGHSNVYAIGDCADVR 290

GO:0016021 "integral to membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008637 "apoptotic mitochondrial changes" evidence=NAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA;IMP

GO:0030261 "chromosome condensation" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|A5PJM4 AIFM2 "Apoptosis-inducing factor 2" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 88/278 (31%), Positives = 150/278 (53%)

Query:    16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT-DY 73
             VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F K++ I+++  +
Sbjct:    14 VVIVGGGFGGIAAASQLQALNIPFVLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTF 73

Query:    74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP------KTRTERLNQYQ 127
               N R      I++    VL  +G+ + + +L++ATG     P       ++   +  Y+
Sbjct:    74 KENFRQGLVVEIDLKNQTVLLEDGQALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYE 133

Query:   128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTR 186
                 +++ ++SI++VGGG  GVE+A EI  ++PEK+VTL+H    L +  + P    + +
Sbjct:   134 DMVTQVQRSQSIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVK 193

Query:   187 DWLISKKVDVKLGERV-NLDS--VSEGSDTYLTST--GDTINADCHFLCTGKPVGSDWLK 241
             + L+ K V + L ERV NL++  V+E  +     T  G  ++A+   +C G  + S   +
Sbjct:   194 EILLRKGVQLLLSERVSNLEALPVNERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYR 253

Query:   242 DTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
                  D L ++G L V+E L+V+G  +I+AIGD  D+R
Sbjct:   254 SAF-GDRLASNGALRVNEYLQVEGYSHIYAIGDCADVR 290

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

RGD|1304964 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 88/281 (31%), Positives = 146/281 (51%)

Query:    16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT--- 71
             VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F K++ I+++   
Sbjct:    14 VVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVESGFAKKTFISYSVTF 73

Query:    72 -DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLN 124
              D    G+++    I++    VL   G  + + +L++ATG   P P    E       + 
Sbjct:    74 KDNFRQGKVIG---IDLKNRMVLLEGGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQ 130

Query:   125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGD 183
              Y+   ++I+ ++ I++VGGG  GVE+A EI  ++PEK+VTL+H    L +  + P    
Sbjct:   131 AYEDMVKQIQRSQFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQ 190

Query:   184 KTRDWLISKKVDVKLGERV-NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSD 238
             + ++ L+ K V + L ERV NL+ +       Y+   T  G  +  +   +C G  + S 
Sbjct:   191 EVKEILLRKGVQLLLSERVSNLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSS 250

Query:   239 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
               +    +  L ++G L V+E L+V+G  NI+AIGD  DI+
Sbjct:   251 AYRSAF-ESRLASNGALKVNEFLQVEGYSNIYAIGDCADIK 290

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0030261 "chromosome condensation" evidence=IEA;ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

UNIPROTKB|E1BR24 AIFM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 86/282 (30%), Positives = 151/282 (53%)

Query:    15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT-- 71
             RVV++GGG  G   A  L+ ++    L+D ++ F    A+LRA VE  F +++ I+++  
Sbjct:    12 RVVIVGGGFGGIAAASQLKSWAVPFVLVDMRDAFHHNVAALRASVESGFARKTFISYSVT 71

Query:    72 --DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP----KT--RTERL 123
               D    G++V    I+    +VL ++G  + Y +L++ATG   P P    K       +
Sbjct:    72 FGDSFRQGKVVG---IDPERQQVLLSDGEELHYSHLILATGSDGPFPGKFNKVIDMESAI 128

Query:   124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAG 182
               Y+   ++I+ +  IL+VGGG  GVE+A EI  ++P K+VTL+H    L +  +     
Sbjct:   129 QTYEDMVKEIEKSERILVVGGGAAGVEMAAEIKTEYPAKEVTLIHSKIALADVELLQSVR 188

Query:   183 DKTRDWLISKKVDVKLGERV-NLDSVSEGS---DTYL-TSTGDTINADCHFLCTGKPVGS 237
              + ++ L+ K V + L E+V N+++++      D  + T  G  +  D   LCTG  + S
Sbjct:   189 QEVKEILLRKGVRLLLSEKVSNVENLTTNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINS 248

Query:   238 DWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
                  T   D L ++G L V+++L+++G  NI+AIGD  +++
Sbjct:   249 SAYA-TAFGDKLASNGALNVNKHLQLEGYDNIYAIGDCANLK 289

GO:0003677 "DNA binding" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

MGI|MGI:1918611 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Mus musculus (taxid:10090)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 87/281 (30%), Positives = 145/281 (51%)

Query:    16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT--- 71
             VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F K++ I+++   
Sbjct:    14 VVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVESGFAKKTFISYSATF 73

Query:    72 -DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLN 124
              D    G+++    I++    VL   G  + + +L++ATG   P P    E       + 
Sbjct:    74 KDNFRQGKVIG---IDLKNRMVLLQGGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQ 130

Query:   125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGD 183
              Y+   ++I+ ++ I++VGGG  GVE+A EI  ++PEK+VTL+H    L +  + P    
Sbjct:   131 AYEDMVKQIQRSQFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQ 190

Query:   184 KTRDWLISKKVDVKLGERV-NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSD 238
             + ++ L+ K V + L ERV NL+ +       Y+   T  G  +  +   +C G  + S 
Sbjct:   191 EVKEILLRKGVQLLLSERVSNLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSS 250

Query:   239 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
               +    +  L ++G L V+E L+V+G  NI+AIGD  D +
Sbjct:   251 AYRSAF-ESRLASNGALKVNEFLQVEGYSNIYAIGDCADTK 290

GO:0003677 "DNA binding" evidence=ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

DICTYBASE|DDB_G0285005 aifB "putative apoptosis inducing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 87/260 (33%), Positives = 139/260 (53%)

Query:    12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
             + KRV++IGGG  G  VAK L    +VT+++ K+ F  +  S+RA+VEP   K+  I + 
Sbjct:     4 EKKRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYD 63

Query:    72 DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-------KTRTERLN 124
               L NG+ +    I I+       +G+ + +DYLVIATG     P       K+ +E LN
Sbjct:    64 KLLKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILN 123

Query:   125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK------KVTLVHKGSRLLEFIG 178
              +Q  +Q+IK A+SILIVGGG    EL  EI   +P K      K+T+VH GS+L   + 
Sbjct:   124 YFQNFSQQIKQAKSILIVGGGAVACELVSEIVEKYPVKDSELVKKITIVHSGSKL---VN 180

Query:   179 PKAGDKTRDWLISK-----KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 233
             PK  DK  + ++SK      V+V L +R+ +    + +    TS    I++  +    G 
Sbjct:   181 PKMNDKFTN-VVSKAMKKRNVEVILNDRITMPDEIKANLLNQTSPNIQISSQNYTTEKGV 239

Query:   234 PVGSDWLKDTI-LKDSLDTH 252
             P+ +D +  T+ +K + +++
Sbjct:   240 PIQADLIIWTVGIKTNSESY 259

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1SUD4 AIFM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 88/288 (30%), Positives = 151/288 (52%)

Query:     6 QQQSEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
             Q   E     VV++GGG  G   A  LQ  +    L+D K+ F    A+LRA VE  F K
Sbjct:     4 QVSMEAGTVHVVIVGGGFGGIAAASQLQALNIPFLLVDMKDSFHHNVAALRASVERGFAK 63

Query:    65 RSVINHT-DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP----KTR 119
             ++ I+++  +  N R      I++    VL  +G  + + +L++ATG     P    K  
Sbjct:    64 KTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDGEALSFSHLILATGSTGLFPGKFNKVS 123

Query:   120 TERL--NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF- 176
             ++++    Y+    +++ +++I++VGGG  GVE+A EI  ++PEK+VTL+H    L +  
Sbjct:   124 SQQMAIQAYEDMVTQVQRSQAIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQMALADTE 183

Query:   177 IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV--SEGSDTYLTST--GDTINADCHFLCT 231
             + P    + ++ L+ K V + L ERV NL+ +  +E  +     T  G  + A+   +C 
Sbjct:   184 LLPCVRQEVKEILLRKGVQLLLSERVSNLEGLPLNEYQECIKVQTDKGTEVAANLVIVCN 243

Query:   232 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
             G  + +   +   L D L   G L V+E+L+V+G  +I+AIGD  ++R
Sbjct:   244 GIRINTLAYRSA-LGDRLAGSGALRVNEHLQVEGCSHIYAIGDCANVR 290

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-43
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	3e-24
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	6e-21
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	6e-20
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	4e-16
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	4e-15
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	4e-13
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	1e-12
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	3e-11
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-08
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	4e-08
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	5e-08
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	7e-08
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	2e-07
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	3e-07
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	8e-07
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	2e-06
TIGR02053	463	TIGR02053, MerA, mercuric reductase	5e-06
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	5e-06
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	6e-06
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	8e-06
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	1e-05
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	2e-05
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-05
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	3e-05
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	5e-05
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	7e-05
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	8e-05
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	8e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-04
pfam13241	104	pfam13241, NAD_binding_7, Putative NAD(P)-binding	2e-04
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	3e-04
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	3e-04
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.001
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	0.002
PLN02546	558	PLN02546, PLN02546, glutathione reductase	0.003
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	0.003
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	0.004
pfam13434	335	pfam13434, K_oxygenase, L-lysine 6-monooxygenase (	0.004

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  152 bits (385), Expect = 3e-43
 Identities = 89/313 (28%), Positives = 128/313 (40%), Gaps = 61/313 (19%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYF-EITW--------ASLRAMVEPS 61
           KR+V++GGG  G   AK L       ++TL+D ++Y               S   +  P 
Sbjct: 4   KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIP- 62

Query: 62  FGKRSVINHTDY--LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT- 118
              R+++  +     V G +     I+    +V  A+   + YDYLV+A G +       
Sbjct: 63  --LRALLRKSGNVQFVQGEVTD---IDRDAKKVTLADLGEISYDYLVVALGSETNYFGIP 117

Query: 119 ------------------RTERLNQYQAENQKIKSAR--SILIVGGGPTGVELAGEIA-- 156
                             R   L  ++  +Q+       +I+IVGGGPTGVELAGE+A  
Sbjct: 118 GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAER 177

Query: 157 ---------VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 207
                    VD  E +V LV  G R+L    PK        L    V+V LG  V    V
Sbjct: 178 LHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVT--EV 235

Query: 208 SEGSDTYLTSTGD-TINADCHFLCTGKPV-GSDWLKDTILKDSLDTHGMLMVDENLRVKG 265
           +    T     G+  I AD      G  V  S  LKD    ++ D  G L+V+  L+V G
Sbjct: 236 TPDGVT--LKDGEEEIPADTVVWAAG--VRASPLLKDLSGLET-DRRGRLVVNPTLQVPG 290

Query: 266 QKNIFAIGDITDI 278
             +IFA GD   +
Sbjct: 291 HPDIFAAGDCAAV 303

Length = 405

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 98.6 bits (246), Expect = 3e-24
 Identities = 71/292 (24%), Positives = 117/292 (40%), Gaps = 37/292 (12%)

Query: 15  RVVVIGGGVAGSLVAKSL-QFSADVTLID------------PKEYFEITWASLRAMVEPS 61
            VV+IGGG AG   A  L +    V LI+            PK    +  A    +    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPK-KLLLEVAEGLELAIGL 59

Query: 62  FGKRSVINH--TDYLVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATG---HKD 113
                V      + L+   +V    I+  E  V+  +   GR + YD L+IATG      
Sbjct: 60  ALPEEVYKEFGVEVLLGTEVVD---IDRGEKTVVLKDVETGREITYDKLIIATGARPRIP 116

Query: 114 PVPKTRTERLN---QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170
            +P      L          + ++  + +++VGGG  G+ELA  +A     K+VT+V + 
Sbjct: 117 GIPGVEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALA-KL-GKEVTVVERR 174

Query: 171 SRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHF 228
            RLL     +      + L    + V +   V +              GD   ++AD   
Sbjct: 175 DRLLARADDEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVL 234

Query: 229 LCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
           +  G +P  ++ L+   ++  LD  G ++VDE LR      I+A GD+ + +
Sbjct: 235 VAIGRRPN-TELLEQAGVE--LDERGYIVVDEYLRTS-VPGIYAAGDVAEGK 282

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 91.5 bits (227), Expect = 6e-21
 Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 46/301 (15%)

Query: 16  VVVIGGGVAGSLVAKSL---QFSADVTLI--DPKEYF---------EITWASL-RAMVEP 60
           +V++GGG AG   A +L     +A++TLI  +PK  +             ASL      P
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60

Query: 61  SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---------- 110
            F + + I   D      + +   I+     VL  +G  + YDYLV+ATG          
Sbjct: 61  RFNRATGI---DVRTGTEVTS---IDPENKVVLLDDGE-IEYDYLVLATGARPRPPPISD 113

Query: 111 -HKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK 169
                  + R +     +A     +  + +++VG GP G+E A   A     KKVTL+  
Sbjct: 114 WEGVVTLRLRED----AEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEA 167

Query: 170 GSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCH- 227
             RL    + P+  ++  + L    V++ LG +V    V    +T +      I+ +   
Sbjct: 168 ADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVV--GVEGKGNTLVVERVVGIDGEEIK 225

Query: 228 --FLCTGKPV-GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 284
              +  G     +  L +  L       G ++VDE        +++A GD+ +I  + + 
Sbjct: 226 ADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETG 285

Query: 285 I 285
            
Sbjct: 286 K 286

Length = 415

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 88.1 bits (219), Expect = 6e-20
 Identities = 71/305 (23%), Positives = 106/305 (34%), Gaps = 69/305 (22%)

Query: 15  RVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWAS----------------- 53
            +V+IGGG   +LV +           VTLI+P      T  S                 
Sbjct: 1   HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST---TPYSGMLPGMIAGHYSLDEIR 57

Query: 54  --LRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH 111
             LR +   +  +          V         I+    +VL A    + YD L +  G 
Sbjct: 58  IDLRRLARQAGAR---------FVIAEATG---IDPDRRKVLLANRPPLSYDVLSLDVGS 105

Query: 112 KDP---VPKTRT------------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA 156
             P   V                  R              + + +VGGG  GVE+A  + 
Sbjct: 106 TTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALR 165

Query: 157 VDFPEK----KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS-VSEGS 211
              P++    +VTL+   S L  F       K R  +   ++  + G  V+  + V+ G 
Sbjct: 166 RRLPKRGLRGQVTLIAGASLLPGF-----PAKVRRLV--LRLLARRGIEVHEGAPVTRGP 218

Query: 212 DTYLT-STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIF 270
           D  L  + G T+ AD     TG      WL ++ L   LD  G L VD  L+     ++F
Sbjct: 219 DGALILADGRTLPADAILWATGA-RAPPWLAESGL--PLDEDGFLRVDPTLQSLSHPHVF 275

Query: 271 AIGDI 275
           A GD 
Sbjct: 276 AAGDC 280

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 77.6 bits (192), Expect = 4e-16
 Identities = 71/317 (22%), Positives = 116/317 (36%), Gaps = 59/317 (18%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEIT------------WASLRAMV 58
           K   VVVIG G AG + A    Q    V L++  E    T              +   + 
Sbjct: 3   KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIE 62

Query: 59  E-----PSFGKRSVINHTDY-------------LVNGR----------IVASPAINITEN 90
           E       +G  + +   D+             L  G           ++   A  +  +
Sbjct: 63  EARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH 122

Query: 91  --EVLTAEGRRVVYDYLVIATG---HKDPVPKTRTERL--NQYQAENQKIKSARSILIVG 143
             EV   +   +  D ++IATG      P P     R+  +       ++   +S++IVG
Sbjct: 123 TVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELP--KSLVIVG 180

Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN 203
           GG  G+E A  +       KVT+V +G R+L    P+   +    L    V + L  +V 
Sbjct: 181 GGYIGLEFAS-VFAAL-GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVT 238

Query: 204 LDSVSEGSDTYLTSTGD--TINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDE 259
                +         G+  TI AD   +  G KP      L++  ++  LD  G + VD+
Sbjct: 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE--LDDRGFIKVDD 296

Query: 260 NLRVKGQKNIFAIGDIT 276
            +       I+AIGD+ 
Sbjct: 297 QMTTN-VPGIYAIGDVI 312

Length = 454

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score = 74.6 bits (183), Expect = 4e-15
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 39/289 (13%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL---QFSADVTLIDPKEY---FEITWASLRAMVEPSFGKR 65
           K K ++++GGG A ++ A SL    F+ ++ L    E    +E    S   ++E S   +
Sbjct: 2   KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFS-DERHLPYERPPLSKSMLLEDSPQLQ 60

Query: 66  SVINHTDYLVN------GRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVP-- 116
            V+    +  N      G  + +  +     E++   G    +D L IATG    P+P  
Sbjct: 61  QVLPANWWQENNVHLHSGVTIKT--LGRDTRELVLTNGESWHWDQLFIATGAAARPLPLL 118

Query: 117 -----KTRTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170
                +  T R         + ++  RS++IVG G  G+ELA   A      KVT++   
Sbjct: 119 DALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS-ATQR-RCKVTVIELA 176

Query: 171 SRLLEFIGPKAGDKTRDWLISK--KVDVKLGERVNLDSVSEGSDTYLT-STGDTINADCH 227
           + ++   G  A    + +L+ +  +  V++     ++ V +G    LT  +G+T+ AD  
Sbjct: 177 ATVM---GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVV 233

Query: 228 FLCTGKPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDI 275
               G         D + +++ LDT   +++DE  R      IFA GD+
Sbjct: 234 IYGIGIS-----ANDQLAREANLDTANGIVIDEACRT-CDPAIFAGGDV 276

Length = 396

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 79/334 (23%), Positives = 120/334 (35%), Gaps = 73/334 (21%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYFEIT---------WAS 53
            R + +  K   VVV+G G AG+   ++L     ++T+I P+ +   T            
Sbjct: 1   MRSRTARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLE 60

Query: 54  LRAMVEPSFGKRSVINHTDY-LVNGRIVASPAINITENEVLTAEGRR----------VVY 102
            R++ EP    R  +       +   +     ++  E  V      +          V Y
Sbjct: 61  FRSICEPV---RPALAKLPNRYLRAVVYD---VDFEEKRVKCGVVSKSNNANVNTFSVPY 114

Query: 103 DYLVIATGHKD----------------PVPKTRTERLNQYQ----AEN--QKIKSARSIL 140
           D LV+A G +                  V   R  R    Q    A      ++  + +L
Sbjct: 115 DKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLL 174

Query: 141 ---IVGGGPTGVELAGEIAVDF-------------PEKKVTLVHKGSRLLEFIGPKAGDK 184
              +VGGGPTGVE A E+A DF              E KVT++  GS +L          
Sbjct: 175 HFVVVGGGPTGVEFAAELA-DFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKY 233

Query: 185 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
            +  L    VD++    V            +   G+ I        TG  VG   L    
Sbjct: 234 GQRRLRRLGVDIRTKTAV----KEVLDKEVVLKDGEVIPTGLVVWSTG--VGPGPLTKQ- 286

Query: 245 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
           LK    + G + VD++LRVK   N+FA+GD    
Sbjct: 287 LKVDKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320

Length = 424

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 33/208 (15%)

Query: 88  TENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTER----LN---QYQAENQKIKSARSIL 140
            E +V+ ++G +  YD LV+ATG    VP          LN   +Y+A   +++ A+ +L
Sbjct: 86  AEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVL 145

Query: 141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFIGPKAGDKTRDWLISKKVD 195
           +VGGG  G ELA ++      K VTLV   + LL       +  +   +    L    V 
Sbjct: 146 VVGGGLIGTELAMDLCRA--GKAVTLVDNAASLLASLMPPEVSSRLQHR----LTEMGVH 199

Query: 196 VKLGERVNLDSVSEGSDTYL--TSTGDTINADCHFLCTG-KPVGSDWLKDTIL--KDSLD 250
           + L  ++    + +          +G +I  D      G +P       +T L  +  L 
Sbjct: 200 LLLKSQLQ--GLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP-------NTALARRAGLA 250

Query: 251 THGMLMVDENLRVKGQKNIFAIGDITDI 278
            +  ++VD  L+     +I+A+GD  +I
Sbjct: 251 VNRGIVVDSYLQTS-APDIYALGDCAEI 277

Length = 377

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 27/209 (12%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TERLNQYQAENQ 131
           +      T E     YDYL+++ G    VP                  T+ + QY  +N+
Sbjct: 77  VVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNK 136

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLI 190
                 +++I+GGG  G+E+A   A+    K VTL+H+  R+L +    +      + L 
Sbjct: 137 ----VENVVIIGGGYIGIEMAE--ALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELK 190

Query: 191 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLD 250
             +++++L E V  DS+       + ++G    AD   L TG    S+  KD+ LK  L 
Sbjct: 191 KHEINLRLNEEV--DSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLK--LG 246

Query: 251 THGMLMVDENLRVKGQKNIFAIGDITDIR 279
             G + V+E  +     NI+A GD+ +  
Sbjct: 247 ETGAIWVNEKFQTS-VPNIYAAGDVAESH 274

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 43/216 (19%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATGHKDP-VPKTRTERLNQYQAENQKIKSA--------- 136
             +   +   G R+    +VIATG + P +P         +     ++ ++         
Sbjct: 116 FVDPNTVEVNGERIEAKNIVIATGSRVPPIPG-------VWLILGDRLLTSDDAFELDKL 168

Query: 137 -RSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189
            +S+ ++GGG  G+EL       G         KVT+  +G R+L    P+   + +  +
Sbjct: 169 PKSLAVIGGGVIGLELGQALSRLG--------VKVTVFERGDRILPLEDPEVSKQAQK-I 219

Query: 190 ISKKVDVKLGERVNLDSVSEGSD---TYLTSTGD--TINADCHFLCTG-KPVGSDWLKDT 243
           +SK+  +KLG +V   SV +  D     L   G   TI AD   + TG +P  +D L   
Sbjct: 220 LSKEFKIKLGAKV--TSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN-TDGLGLE 276

Query: 244 ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
                LD  G  +VDE+ +      I+A GD+    
Sbjct: 277 NTGIELDERGRPVVDEHTQ-TSVPGIYAAGDVNGKP 311

Length = 460

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 49.1 bits (118), Expect = 4e-08
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 197
            +++VGGG  G+E A          KVT+V +  RLL     +     ++ L    ++V 
Sbjct: 1   RVVVVGGGYIGLEFA-SALAKL-GSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVL 58

Query: 198 LGERVN 203
           L   V 
Sbjct: 59  LNTTVE 64

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 67/307 (21%), Positives = 114/307 (37%), Gaps = 71/307 (23%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWAS----------------L 54
            ++++IGG  AG   A   K L    ++T+ +  +   +++ +                +
Sbjct: 1   MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI--VSFGACGLPYFVGGFFDDPNTM 58

Query: 55  RAMVEPSFGKRSV---INHTDYLV---NGRIVASPAINITENEVLTAEGRRVVYDYLVIA 108
            A     F K  +     H    V   N  I      N+    +         YD L+IA
Sbjct: 59  IARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVK---NLKTGSIFNDT-----YDKLMIA 110

Query: 109 TGHKDPVPKTRTERLNQYQAEN----------QKIKSA------RSILIVGGGPTGVELA 152
           TG +  +P      +     EN            +K        ++I+I+G G  G+E  
Sbjct: 111 TGARPIIPP-----IKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAV 165

Query: 153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK-----TRDWLISKKVDVKLGERVNLDSV 207
            E A     K V ++    R+L    P + DK       + L    V++ L E V    +
Sbjct: 166 -EAAKHL-GKNVRIIQLEDRIL----PDSFDKEITDVMEEELRENGVELHLNEFV-KSLI 218

Query: 208 SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQK 267
            E     + +      AD   + TG    +++L+DT LK     +G ++VDE       +
Sbjct: 219 GEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLK--TLKNGAIIVDEYGETS-IE 275

Query: 268 NIFAIGD 274
           NI+A GD
Sbjct: 276 NIYAAGD 282

Length = 444

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 12/195 (6%)

Query: 91  EVLTAEGRRVV-YDYLVIATGHKD-----PVPKTRTERLNQYQAENQKIKSARSILIVGG 144
            V    G   +    ++IATG +      P        +    A N +     S++I+GG
Sbjct: 120 SVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEV-PESLVIIGG 178

Query: 145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 204
           G  GVE A  I       KVT++    R+L     +     +  L  K V +    +V  
Sbjct: 179 GVIGVEFA-SIFASL-GSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKILTNTKVTA 236

Query: 205 DSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLR 262
              ++   TY    G+  T+  +   +  G+   ++ L    L   LD  G ++VDE +R
Sbjct: 237 VEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMR 296

Query: 263 VKGQKNIFAIGDITD 277
                 I+AIGD+  
Sbjct: 297 TNVP-GIYAIGDVIG 310

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 45/226 (19%)

Query: 77  GRIV----ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQK 132
           GRI+     SP       E  T E   ++ + L+IATG + PV       L     + + 
Sbjct: 114 GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSR-PVE------LPGLPFDGEY 166

Query: 133 IKSA----------RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFI 177
           + S+          +S++IVGGG  G+E A  +A DF   +VT+V    R+L     E  
Sbjct: 167 VISSDEALSLETLPKSLVIVGGGVIGLEWASMLA-DF-GVEVTVVEAADRILPTEDAELS 224

Query: 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD----TINADCHFLCTG- 232
              A       L    V V  G +V   ++ +     + +  +    T+ AD   +  G 
Sbjct: 225 KEVA-----RLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR 279

Query: 233 KPVGSDW-LKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIGDIT 276
           +P      L++T     +D   G + +D+  + K +++I+AIGD+ 
Sbjct: 280 RPNTEGIGLENT----DIDVEGGFIQIDDFCQTK-ERHIYAIGDVI 320

Length = 472

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 18/213 (8%)

Query: 69  NHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA 128
           N   Y  + R V    +   + E +T        D +VIA G +  +P    +   +Y  
Sbjct: 106 NIDVYDGHARFVGPRTLRTGDGEEITG-------DQIVIAAGSRPYIPPAIADSGVRYHT 158

Query: 129 ENQKIKSA---RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT 185
               ++      S++IVGGG    E A          +VT+V++ ++LL  +     D+ 
Sbjct: 159 NEDIMRLPELPESLVIVGGGYIAAEFAH--VFSALGTRVTIVNRSTKLLRHLDEDISDRF 216

Query: 186 RDWLISKKVDVKLGERVNLDSVSEGSD--TYLTSTGDTINADCHFLCTGKPVGSDWLKDT 243
            + +  KK D++LG   N+ +V +  D  T     G T+ AD   + TG+    D L   
Sbjct: 217 TE-IAKKKWDIRLGR--NVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAE 273

Query: 244 ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276
                +D  G + VDE  R    + ++A+GD++
Sbjct: 274 AAGVEVDEDGRIKVDEYGRTSA-RGVWALGDVS 305

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 59/205 (28%), Positives = 86/205 (41%), Gaps = 38/205 (18%)

Query: 91  EVLTAEGRRVVY--DYLVIATGHKDPVPKTRTERLNQYQAENQKI----------KSARS 138
           EV   +G       D +VIATG       +R  R      ++ +I             RS
Sbjct: 125 EVECPDGEVETLTADKIVIATG-------SRPYRPPDVDFDHPRIYDSDSILSLDHLPRS 177

Query: 139 ILIVGGGPTGVELAGEIA---VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 195
           ++I G G  G E A   A   V     KVTL++   RLL F+  +  D     L    V 
Sbjct: 178 LIIYGAGVIGCEYASIFAALGV-----KVTLINTRDRLLSFLDDEISDALSYHLRDSGVT 232

Query: 196 VKLGERVNLDSVSEGSD---TYLTSTGDTINADCHFLCTGKPVGSDWLK-DTI-LKDSLD 250
           ++  E V  + V  G D    +L S G  I ADC     G+   +D L  +   L+   D
Sbjct: 233 IRHNEEV--EKVEGGDDGVIVHLKS-GKKIKADCLLYANGRTGNTDGLNLENAGLE--AD 287

Query: 251 THGMLMVDENLRVKGQKNIFAIGDI 275
           + G L V+EN +     +I+A+GD+
Sbjct: 288 SRGQLKVNENYQTA-VPHIYAVGDV 311

Length = 461

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 65/306 (21%), Positives = 124/306 (40%), Gaps = 63/306 (20%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITW-------ASLRAMVEPSFGK 64
           K +++V+IG G+AG    + L       L    + ++IT           R ++      
Sbjct: 2   KKQKLVIIGNGMAGHRTIEEL-------LESAPDLYDITVFGEEPRPNYNRILLSSVLAG 54

Query: 65  RS-----VINHTDY--------LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG- 110
                   +N  D+            +++    I+     V T  GR V YD L+IATG 
Sbjct: 55  EKTAEDISLNRNDWYEENGITLYTGEKVIQ---IDRANKVVTTDAGRTVSYDKLIIATGS 111

Query: 111 --HKDPVP-KTRTERLNQYQAEN-QKIKSA----RSILIVGGGPTGVELA-GEIAVDFPE 161
                P+P             ++ + +       +  +++GGG  G+E A G   +    
Sbjct: 112 YPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGME- 170

Query: 162 KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE------GSDTYL 215
             VT+VH    L+E    +  D+T   L+ +K++  LG +V L+  +E        +   
Sbjct: 171 --VTVVHIAPTLME----RQLDRTAGRLLRRKLE-DLGIKVLLEKNTEEIVGEDKVEGVR 223

Query: 216 TSTGDTINADCHFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIG 273
            + G  I AD   +  G +P       D + K++ L  +  ++V++ ++     +I+A+G
Sbjct: 224 FADGTEIPADLVVMAVGIRP------NDELAKEAGLAVNRGIVVNDYMQTS-DPDIYAVG 276

Query: 274 DITDIR 279
           +  + R
Sbjct: 277 ECAEHR 282

Length = 793

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 55/203 (27%), Positives = 81/203 (39%), Gaps = 24/203 (11%)

Query: 89  ENEVLTAEGRRVV-YDYLVIATGHKDPVPK----------TRTERLNQYQAENQKIKSAR 137
              V    GR V      +IATG +  +P           T  E L    A ++  +S  
Sbjct: 115 PKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEAL----ALDRIPES-- 168

Query: 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 197
            + ++GGG  GVELA   A    E  VT++ +  RLL    P+      + L  + ++V 
Sbjct: 169 -LAVIGGGAIGVELAQAFARLGSE--VTILQRSDRLLPREEPEISAAVEEALAEEGIEVV 225

Query: 198 LGERVNLDSVSEGS---DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 254
              +V   SV  G              + AD   + TG+   +D L        LD  G 
Sbjct: 226 TSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGG 285

Query: 255 LMVDENLRVKGQKNIFAIGDITD 277
           ++VDE LR      I+A GD+T 
Sbjct: 286 ILVDETLRTS-NPGIYAAGDVTG 307

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 36/205 (17%)

Query: 86  NITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQAENQKI 133
           N   NE          YD L+++ G                     T+ ++Q+   NQ  
Sbjct: 95  NRKTNEQFEES-----YDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQ-- 147

Query: 134 KSARSILIVGGGPTGVELAGEI---AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI 190
                 L+VG G   +E+   +    +       TL+H+  ++ + +         D L 
Sbjct: 148 --VDKALVVGAGYISLEVLENLYERGLH-----PTLIHRSDKINKLMDADMNQPILDELD 200

Query: 191 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLD 250
            +++  +L E +  D+++    T+   +G   + D      G    S +++ + +K  LD
Sbjct: 201 KREIPYRLNEEI--DAINGNEVTF--KSGKVEHYDMIIEGVGTHPNSKFIESSNIK--LD 254

Query: 251 THGMLMVDENLRVKGQKNIFAIGDI 275
             G + V++        NI+AIGDI
Sbjct: 255 DKGFIPVNDKFETN-VPNIYAIGDI 278

Length = 438

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 8/184 (4%)

Query: 99  RVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSA-RSILIVGGGPTGVELAGEI-A 156
           R+  +++++ATG    +             E   +    R +L VGGG   VE AG   A
Sbjct: 149 RLQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNA 208

Query: 157 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE---RVNLDSVSEGSDT 213
                 KVTL ++ + +L         +    L +  +++   E   +V L++  +GS  
Sbjct: 209 YKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNA--DGSKH 266

Query: 214 YLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 273
               +G T++ D   +  G+   +  L+   +   L   G + VDE  R     NI+AIG
Sbjct: 267 VTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTN-VPNIYAIG 325

Query: 274 DITD 277
           D+TD
Sbjct: 326 DVTD 329

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 6/191 (3%)

Query: 90  NEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKS-ARSILIVGGGPT 147
           N V + A G+    + ++IA G + P P      L     E   + +  +SILI GGG  
Sbjct: 118 NTVEVLASGKTYTAEKILIAVGGRPPKPALPGHELGITSNEAFHLPTLPKSILIAGGGYI 177

Query: 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV-NLDS 206
            VE AG         + TL+++G  +L              L  + + +   + + ++  
Sbjct: 178 AVEFAGIFR--GLGVQTTLIYRGKEILRGFDDDMRRGLAAALEERGIRILPEDSITSISK 235

Query: 207 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 266
             +G      S  + I AD     TG+   ++ L        L+  G + VDE  R    
Sbjct: 236 DDDGRLKATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTS-T 294

Query: 267 KNIFAIGDITD 277
            +I+A+GD+TD
Sbjct: 295 PSIYAVGDVTD 305

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 38/174 (21%)

Query: 1   MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVE 59
            +   +    G  K+V VIG G AG   A  L +    VT+ + +E       +   +V+
Sbjct: 527 KQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE-------NAGGVVK 579

Query: 60  ---PSFGKR---SVINH-----TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIA 108
              P F  R    +I H       + V      SP + + +   L  EG    YDY+V+A
Sbjct: 580 NIIPQF--RIPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQ---LKNEG----YDYVVVA 630

Query: 109 TG-HKDPVPKTRTER---------LNQYQAENQKIKSARSILIVGGGPTGVELA 152
            G  K+   K              L +Y+ +   +K  + +++VGGG T ++ A
Sbjct: 631 IGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAA 684

Length = 1019

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 16/147 (10%)

Query: 137 RSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI 190
            S++IVGGG    E A      G         +VT+V++  RLL  +     ++  + L 
Sbjct: 167 ESLVIVGGGFIAAEFAHVFSALG--------VRVTVVNRSGRLLRHLDDDISERFTE-LA 217

Query: 191 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLD 250
           SK+ DV+LG  V   S      T     G T+ AD   + TG+    D L        +D
Sbjct: 218 SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVD 277

Query: 251 THGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VDE  R    + +FA+GD++ 
Sbjct: 278 EDGRVVVDEYQRT-SAEGVFALGDVSS 303

Length = 451

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 10/183 (5%)

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI 155
           +G+ +    ++IA G+K   P  + +       +  KIK A+ I I G G   VEL    
Sbjct: 197 DGQVIEGKNILIAVGNKPIFPDVKGKEFTISSDDFFKIKEAKRIGIAGSGYIAVELIN-- 254

Query: 156 AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV----SEGS 211
            V+    +  +  +G+RLL        ++  + +  KK ++ +    N++ +     +  
Sbjct: 255 VVNRLGAESYIFARGNRLLRKFDETIINELENDM--KKNNINIITHANVEEIEKVKEKNL 312

Query: 212 DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFA 271
             YL+      + D    C G+   ++ L    L       G + VD+N R    K+I+A
Sbjct: 313 TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI-KTPKGYIKVDDNQRTS-VKHIYA 370

Query: 272 IGD 274
           +GD
Sbjct: 371 VGD 373

Length = 561

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 40/205 (19%)

Query: 88  TENEVLTAEGRRVVYDYLVIATG--HKDPVPKTRTERLNQ---YQAENQKIKSARSILIV 142
           T+     A         ++IATG   +        E   +   Y A        + ++++
Sbjct: 97  TDKGTYEA-------KAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVI 149

Query: 143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-----KVDVK 197
           GGG + VE A  ++     KKVTLVH+              +  + L+ +     K++V 
Sbjct: 150 GGGDSAVEEALYLSKIA--KKVTLVHRRDEF----------RAEEILVERLKKNVKIEVL 197

Query: 198 LG---ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 254
                + +  D V       +      +  D  F+  G    ++ LK   +   LD +G 
Sbjct: 198 TNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV---LDENGY 254

Query: 255 LMVDENLR--VKGQKNIFAIGDITD 277
           ++VDE +   V G   IFA GD+ D
Sbjct: 255 IVVDEEMETSVPG---IFAAGDVAD 276

Length = 305

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 37/167 (22%)

Query: 15  RVVVIGGGVAG-----SLVAKSLQFSADVTLI--DPKE---------YFEITWASLRAMV 58
           R+ +IG G+ G      L+ K+   + D+T+   +P+          YF    A   ++V
Sbjct: 5   RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLV 64

Query: 59  EPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT 118
              F ++  I     LV  R +    IN  E  + ++ GR V YD L++ATG    +P  
Sbjct: 65  REGFYEKHGIK---VLVGERAIT---INRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPI 118

Query: 119 -----------RT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAG 153
                      RT E LN  +A  ++ K      +VGGG  G+E AG
Sbjct: 119 KGSETQDCFVYRTIEDLNAIEACARRSKRG---AVVGGGLLGLEAAG 162

Length = 847

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 36/157 (22%)

Query: 137 RSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI 190
             ++I+GGG  G+E A      G         +VT++ +G RLL           R+ L 
Sbjct: 172 EHLVIIGGGYIGLEFAQMFRRFG--------SEVTVIERGPRLLPREDEDVAAAVREILE 223

Query: 191 SKKVDVKLG-ERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKD 247
            + +DV+L  E + ++   +G    L   G    I      +  G+   +D L       
Sbjct: 224 REGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDL------- 276

Query: 248 SL-------DTHGMLMVDENLR--VKGQKNIFAIGDI 275
            L       D  G + VD+ LR    G   I+A GD 
Sbjct: 277 GLEAAGVETDARGYIKVDDQLRTTNPG---IYAAGDC 310

Length = 463

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 14/147 (9%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
           + + +VG G   VE AG    +  +       L  +G   L    P   +   + +  K 
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSE-----THLFVRGDAPLRGFDPDIRETLVEEMEKKG 222

Query: 194 VDVKLGERV-NLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLD 250
           + +        ++  ++GS T     G+T+  DC     G +P      L++  +K  L+
Sbjct: 223 IRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVK--LN 280

Query: 251 THGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VDE         I+A+GD+T 
Sbjct: 281 EKGYIIVDEYQNTN-VPGIYAVGDVTG 306

Length = 450

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 38/225 (16%)

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKDPVPKT--------RT-E 121
                ++    I+  + +V+T  GR + YD L++ATG      P+P          RT E
Sbjct: 72  YTGETVIQ---IDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIE 128

Query: 122 RLNQYQAENQKIKSARSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLL-EFI 177
            L+   A  Q+ K A    ++GGG  G+E A     + +D     V+++H    L+ + +
Sbjct: 129 DLDAIMAMAQRFKKA---AVIGGGLLGLEAAVGLQNLGMD-----VSVIHHAPGLMAKQL 180

Query: 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTG-KPV 235
              AG   +  L  K +   L E+  ++ V     D      G ++ AD   +  G +P 
Sbjct: 181 DQTAGRLLQRELEQKGLTFLL-EKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP- 238

Query: 236 GSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
                 D +   + +  +  ++V+++++     +I+A+G+  +  
Sbjct: 239 -----NDELAVSAGIKVNRGIIVNDSMQTS-DPDIYAVGECAEHN 277

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 8   QSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRS 66
           +     KRVVV+GGG  G  +A +L +   +VT+++ ++        L    +       
Sbjct: 137 ELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL------LARADDEISAALL 190

Query: 67  VINHTDYLVNGRIVASPAINITEN----EVLTAEGRRVVYDYLVIATGHK 112
                  L    ++    +    +    EV   +G  +  D +++A G +
Sbjct: 191 EKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRR 240

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|222002 pfam13241, NAD_binding_7, Putative NAD(P)-binding

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 12 KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFE---ITWA 52
          K KRV+V+GGG VA   +   L+  A VT++ P+       +   
Sbjct: 6  KGKRVLVVGGGEVALRKIRALLEAGAKVTVVSPEILEAEGLVRLI 50

This domain is found in fungi, plants, archaea and bacteria. Length = 104

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEYFEITWASLRA 56
                  G   R+ V+GGG AG  +A +L+           VTLI          A +R 
Sbjct: 137 ESADAPPGTK-RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRR 195

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDP 114
           +V     +R +  H           +P     +  ++ A+GR +  D ++ ATG + P
Sbjct: 196 LVLRLLARRGIEVHEG---------APVTRGPDGALILADGRTLPADAILWATGARAP 244

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 69/306 (22%), Positives = 111/306 (36%), Gaps = 63/306 (20%)

Query: 8   QSEGKNKRVVVIGGGVAGSLVAKSLQFSA-DVTLIDPKEYFEITWASLRAMVEPSFGKRS 66
           Q +    +V VIG G AG      L  +   VT+ + KE        +   + P F   +
Sbjct: 532 QGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE----KPGGVVKNIIPEFRISA 587

Query: 67  -VINHTDYLVNGRIV-----ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT 120
             I     LV    V      SP + + E   L  +G    Y Y+++A G     P    
Sbjct: 588 ESIQKDIELVKFHGVEFKYGCSPDLTVAE---LKNQG----YKYVILAIGAWKHGPLRLE 640

Query: 121 ----------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPE-KKVTLV-- 167
                     E L  ++         + +++VGGG T ++ A   A+  P  +KVT+V  
Sbjct: 641 GGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAA-RAALRVPGVEKVTVVYR 699

Query: 168 -----------------HKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 210
                              G    E + P++ +     L  + +  KLGE          
Sbjct: 700 RTKRYMPASREELEEALEDGVDFKELLSPESFEDGT--LTCEVM--KLGEP------DAS 749

Query: 211 SDTYLTSTGDTIN--ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN 268
                  TG+T++  AD      G+ V +D L+       LD +G  +V++        N
Sbjct: 750 GRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQK--NGIPLDEYGWPVVNQATGETNITN 807

Query: 269 IFAIGD 274
           +F IGD
Sbjct: 808 VFVIGD 813

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLID 42
           +    K +   +IGGG+AG+ +A +L      VTL +
Sbjct: 254 RPGSPKARDAAIIGGGIAGAALALALARRGWQVTLYE 290

Length = 662

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 22/213 (10%)

Query: 73  YLVNGRIVASPAINIT---ENEVLTAEGRRVVYDYLVIATGHKD---PVPKTRTERLNQY 126
           Y      V++  I +    E   LTAE        +VI TG      P+P     +    
Sbjct: 94  YDAEAHFVSNKVIEVQAGDEKIELTAE-------TIVINTGAVSNVLPIPGLADSKHVYD 146

Query: 127 QAENQKIKSARSIL-IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT 185
               Q +++    L I+GGG  G+E AG         KVT++   S +L    P      
Sbjct: 147 STGIQSLETLPERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAASTILPREEPSVAALA 204

Query: 186 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDT 243
           + ++    +   L         ++G    + +  +T   D     TG KP      L++T
Sbjct: 205 KQYMEEDGITFLLNAHTTEVK-NDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENT 263

Query: 244 ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276
            ++  L   G + VD+  +      +FA+GD+ 
Sbjct: 264 DIE--LTERGAIKVDDYCQTS-VPGVFAVGDVN 293

Length = 438

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 35/182 (19%)

Query: 130 NQKIKSARSILI-VGGGPTGVELAG-------EIAVDFPEK--KVTLVHKGSRLLEFIGP 179
           + K+ +AR+ILI VGG P   ++ G       + A+D P K  K+ +V  G   LEF G 
Sbjct: 211 DGKLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGI 270

Query: 180 KAGDKT--RDWLISKKV------DVK--LGERVNLDSV---SEGSDTYLTSTGD------ 220
             G K+    ++  KKV      +V+  + E+++L  +   +E S   +  + D      
Sbjct: 271 FNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLK 330

Query: 221 ----TINADCHFL-CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 275
               T+    H +  TG+   +  L    +   +D +G + VDE  R     +I+A+GD+
Sbjct: 331 TNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS-VPSIWAVGDV 389

Query: 276 TD 277
           TD
Sbjct: 390 TD 391

Length = 558

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 61/154 (39%)

Query: 17  VVIGGGVAGSLVAKSLQFSA-----DVTLIDPKE------YF--------------EIT- 50
            +IG G  G  V + L   A     D+T+ DP        +               +++ 
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQPPQLLLNTPAAQMSL 60

Query: 51  ----------WASLRAMVEPSFGK-----RSVINHTDYL--------------VNGRIVA 81
                     W   +   E          R++     YL              V  R+  
Sbjct: 61  FPDDPPSFLEWLEAQGEEEAGLDPDDFPPRALFGE--YLRWRFSELLARAPAGVTVRVHR 118

Query: 82  SPAINITEN----EVLTAEGRRVVYDYLVIATGH 111
           +  +++        V  A+G  +  D +V+ATGH
Sbjct: 119 AEVVDLRPRGGGYTVTLADGATLRADAVVLATGH 152

Length = 153

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 15/197 (7%)

Query: 88  TENEVLTAEGRRVVYDYLVIATGHKDPVPKT------RTERLNQYQAENQKIKSARSILI 141
           T++  +   GR     +++IATG K   P+        T+    +  E       + ++I
Sbjct: 116 TKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEEL----PKRVVI 171

Query: 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV-KLGE 200
           VG G   VELAG +       +  LV +  R+L        +   +    + ++V KL +
Sbjct: 172 VGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSK 229

Query: 201 RVNLDSVSEGSDTYLTSTGDTI-NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE 259
            V ++   EG        G +I + D      G+   +  L    +   L+  G ++VDE
Sbjct: 230 PVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDE 289

Query: 260 NLRVKGQKNIFAIGDIT 276
             +      I+A+GD+ 
Sbjct: 290 -YQNTNVPGIYALGDVV 305

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring)

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 23/110 (20%)

Query: 105 LVIATGHK----DPVPKTRTERL---NQYQAENQKIKSARSILIVGGGPTGVELAGEIAV 157
           LV+ TG      +       ER+   ++Y     ++ + + I +VGGG +  E+  ++  
Sbjct: 147 LVLGTGTTPYIPECAKPLPGERVFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDLLR 206

Query: 158 DFPEKKVTLVHKGSRL---------LEFIGPKAGD-------KTRDWLIS 191
             P  ++T V +              E+  P+  D       + RD L+ 
Sbjct: 207 RQPGYQLTWVTRRPNFFPLDDSPFTNEYFSPEYVDYFYALPEEKRDRLLR 256

This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PLN02507	499	glutathione reductase	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PLN02546	558	glutathione reductase	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.98
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.97
PRK12831	464	putative oxidoreductase; Provisional	99.97
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.97
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.97
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.97
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.97
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.97
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.96
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.96
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.96
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.96
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.96
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.96
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.96
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.95
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.95
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.95
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.95
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.95
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.95
PRK13984	604	putative oxidoreductase; Provisional	99.94
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.94
PLN02852	491	ferredoxin-NADP+ reductase	99.94
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.93
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.93
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.93
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.93
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.92
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.92
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.88
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.85
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.84
KOG2755	334	consensus Oxidoreductase [General function predict	99.83
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.83
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.8
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.79
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.78
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.77
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.76
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.76
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.69
PTZ00188	506	adrenodoxin reductase; Provisional	99.64
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.63
COG2081	408	Predicted flavoproteins [General function predicti	99.59
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.58
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.43
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.43
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.42
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.41
COG0579	429	Predicted dehydrogenase [General function predicti	99.33
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.31
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.3
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.29
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.28
PRK10157	428	putative oxidoreductase FixC; Provisional	99.28
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.28
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.27
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.26
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.26
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.25
PRK10015	429	oxidoreductase; Provisional	99.24
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.22
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.22
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.19
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.19
PRK06847	375	hypothetical protein; Provisional	99.18
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.18
PRK08163	396	salicylate hydroxylase; Provisional	99.17
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.17
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.17
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.16
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.16
PRK05257	494	malate:quinone oxidoreductase; Validated	99.15
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.15
PRK07190	487	hypothetical protein; Provisional	99.15
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.14
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.13
PLN02463	447	lycopene beta cyclase	99.13
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.13
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.12
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.12
PRK08013	400	oxidoreductase; Provisional	99.11
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.11
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.11
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.09
PRK09897	534	hypothetical protein; Provisional	99.09
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.08
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.08
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.08
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.07
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	99.07
PRK06834	488	hypothetical protein; Provisional	99.07
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.06
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.06
PRK09126	392	hypothetical protein; Provisional	99.04
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.04
PRK07233	434	hypothetical protein; Provisional	99.03
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.02
PRK07588	391	hypothetical protein; Provisional	99.01
PRK06184	502	hypothetical protein; Provisional	99.01
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.99
PRK05868	372	hypothetical protein; Validated	98.99
PRK07045	388	putative monooxygenase; Reviewed	98.99
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.98
PRK08244	493	hypothetical protein; Provisional	98.97
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.96
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.96
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.96
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.95
PRK06185	407	hypothetical protein; Provisional	98.95
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.94
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.93
PRK06996	398	hypothetical protein; Provisional	98.93
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.93
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.92
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.92
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.92
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.92
PRK06753	373	hypothetical protein; Provisional	98.91
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.91
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.91
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.91
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.91
PLN02697	529	lycopene epsilon cyclase	98.9
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.89
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.89
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.89
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.88
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.87
PRK06475	400	salicylate hydroxylase; Provisional	98.85
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.85
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.85
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.84
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.84
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.84
PRK06175	433	L-aspartate oxidase; Provisional	98.84
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.82
PRK11445	351	putative oxidoreductase; Provisional	98.81
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.79
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.79
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.79
PLN02612	567	phytoene desaturase	98.79
PRK08274	466	tricarballylate dehydrogenase; Validated	98.78
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.78
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.78
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.74
KOG2853	509	consensus Possible oxidoreductase [General functio	98.74
PLN02487	569	zeta-carotene desaturase	98.73
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.72
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.71
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.7
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.7
PRK08401	466	L-aspartate oxidase; Provisional	98.69
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.69
PRK07538	413	hypothetical protein; Provisional	98.69
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.68
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.68
PRK07804	541	L-aspartate oxidase; Provisional	98.66
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.63
PRK07236	386	hypothetical protein; Provisional	98.63
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.62
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.61
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.59
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.58
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.58
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.57
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.57
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.55
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.55
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.55
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.55
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.54
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.54
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.54
PRK07208	479	hypothetical protein; Provisional	98.53
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.53
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.53
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.5
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.47
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.45
PLN02268	435	probable polyamine oxidase	98.43
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.43
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.43
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.42
COG3349	485	Uncharacterized conserved protein [Function unknow	98.41
PLN02576	496	protoporphyrinogen oxidase	98.4
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.4
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.39
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.39
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.38
PLN02568	539	polyamine oxidase	98.37
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.36
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.35
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.34
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.33
PRK06126	545	hypothetical protein; Provisional	98.33
PRK07236	386	hypothetical protein; Provisional	98.32
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.3
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.3
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.29
PLN02661	357	Putative thiazole synthesis	98.28
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.27
PLN02985	514	squalene monooxygenase	98.26
PTZ00367	567	squalene epoxidase; Provisional	98.24
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.24
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.24
PRK10262	321	thioredoxin reductase; Provisional	98.24
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.23
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.2
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.19
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.18
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.18
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.18
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.18
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.18
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.17
PLN02676	487	polyamine oxidase	98.17
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.17
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.16
PRK07121	492	hypothetical protein; Validated	98.16
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.16
PLN02852	491	ferredoxin-NADP+ reductase	98.15
PRK07846	451	mycothione reductase; Reviewed	98.14
PLN02529	738	lysine-specific histone demethylase 1	98.14
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.13
PRK09897	534	hypothetical protein; Provisional	98.12
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.12
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.12
PRK08294	634	phenol 2-monooxygenase; Provisional	98.12
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.11
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.09
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.09
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.08
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.08
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.07
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.07
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.06
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.06
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.05
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.05
PRK07395	553	L-aspartate oxidase; Provisional	98.05
PRK12831	464	putative oxidoreductase; Provisional	98.05
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.04
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.04
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.04
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.04
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.01
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.99
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.99
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.99
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.99
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.98
PRK08071	510	L-aspartate oxidase; Provisional	97.98
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.98
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.98
TIGR02053	463	MerA mercuric reductase. This model represents the	97.98
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.98
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.97
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.97
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.95
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.95
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.94
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.94
PRK12839	572	hypothetical protein; Provisional	97.94
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.94
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.94
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.93
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.93
PRK14694	468	putative mercuric reductase; Provisional	97.93
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.92
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.92
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.92
PRK06116	450	glutathione reductase; Validated	97.92
PRK06370	463	mercuric reductase; Validated	97.92
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.92
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.91
PLN02815	594	L-aspartate oxidase	97.89
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.89
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.89
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.89
PRK02106	560	choline dehydrogenase; Validated	97.88
PLN02661	357	Putative thiazole synthesis	97.88
PTZ00188	506	adrenodoxin reductase; Provisional	97.87
PRK09077	536	L-aspartate oxidase; Provisional	97.87
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.87
PLN02507	499	glutathione reductase	97.86
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.86
PLN03000	881	amine oxidase	97.85
PTZ00052	499	thioredoxin reductase; Provisional	97.85
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.85
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.85
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.85
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.85
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.81
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.79
PRK08275	554	putative oxidoreductase; Provisional	97.79
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.78
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.77
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.75
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.75
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.75
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.75
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.74
PLN02976	1713	amine oxidase	97.73
PRK07512	513	L-aspartate oxidase; Provisional	97.71
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.7
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.7
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.7
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.69
PRK13748	561	putative mercuric reductase; Provisional	97.66
PRK14727	479	putative mercuric reductase; Provisional	97.66
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.65
PTZ00058	561	glutathione reductase; Provisional	97.65
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.64
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.63
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.63
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.62
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.61
KOG2755	334	consensus Oxidoreductase [General function predict	97.61
PLN02785	587	Protein HOTHEAD	97.6
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.56
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.54
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.54
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.52
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.52
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.52
PRK06126	545	hypothetical protein; Provisional	97.5
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.47
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.45
PLN02546	558	glutathione reductase	97.39
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.38
PRK13984	604	putative oxidoreductase; Provisional	97.37
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.37
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.33
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.31
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.29
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.23
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.22
COG3573	552	Predicted oxidoreductase [General function predict	97.22
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.22
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.12
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.11
KOG2852	380	consensus Possible oxidoreductase [General functio	97.07
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.06
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.02
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.99
PRK08294	634	phenol 2-monooxygenase; Provisional	96.99
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	96.97
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.96
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.94
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.93
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.92
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.92
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.86
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.83
COG4716	587	Myosin-crossreactive antigen [Function unknown]	96.83
PLN02985	514	squalene monooxygenase	96.78
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.77
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.73
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.73
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.73
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.72
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.71
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.69
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.69
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.64
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.63
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.57
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.5
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.5
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.48
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.41
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	96.39
PRK07121	492	hypothetical protein; Validated	96.36
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.34
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.32
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.27
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.27
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.22
PRK08275	554	putative oxidoreductase; Provisional	96.17
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.12
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.09
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.09
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.09
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.09
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.08
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.08
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.05
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.96
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	95.94
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.9
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	95.89
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	95.82
PRK04148	134	hypothetical protein; Provisional	95.8
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.79
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.77
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.76
PTZ00367	567	squalene epoxidase; Provisional	95.76
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.69
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	95.63
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.63
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.61
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.57
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.56
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.55
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.52
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.51
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.47
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.46
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	95.44
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.35
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.33
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.32
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.31
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.31
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.26
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.23
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	95.19
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.19
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.17
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.07
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.06
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.01
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.96
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.94
PRK08071	510	L-aspartate oxidase; Provisional	94.94
COG2081	408	Predicted flavoproteins [General function predicti	94.86
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.86
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.8
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.78
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.72
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.7
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.69
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.69
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.67
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.66
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.64
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.56
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.53
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.53
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.51
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.49
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.46
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.46

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2.5e-39  Score=272.59  Aligned_cols=272  Identities=24%  Similarity=0.310  Sum_probs=212.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh--------------hcC-C--------c---ccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA--------------MVE-P--------S---FGK   64 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~--------------~~~-~--------~---~~~   64 (290)
                      .+||++||||||+|..+|.++++ |.+|.++|+...+|+.+.....              ... .        .   +..
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~   82 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF   82 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence            46999999999999999999986 8889999999655543221100              000 0        0   000


Q ss_pred             ccccccc------------ccc--ccceEEeeeeeeeecceEEecC--ceEEeccEEEEccCCCCCCCC---chHHHHHH
Q 022896           65 RSVINHT------------DYL--VNGRIVASPAINITENEVLTAE--GRRVVYDYLVIATGHKDPVPK---TRTERLNQ  125 (290)
Q Consensus        65 ~~~~~~~------------~~~--~~~~~~~~~v~~~~~~~v~~~~--~~~~~~~~vi~a~G~~~~~p~---~~~~~~~~  125 (290)
                      ..+....            .++  .+++++.+...+.++.++...+  ...++++++|+|||++|..|+   .....+..
T Consensus        83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~  162 (454)
T COG1249          83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILD  162 (454)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEe
Confidence            0000000            011  1468899999999988877766  478999999999999987765   33333333


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      ..........+++++|||+|+.|+|+|..+..  .+.+||++++.+++++.+++++.+.+.+.+++.|++++.++.++.+
T Consensus       163 s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~  240 (454)
T COG1249         163 SSDALFLLELPKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV  240 (454)
T ss_pred             chhhcccccCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence            43433334779999999999999999999996  7999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeEEcCCCc--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          206 SVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      +..++++.+.+.+|+  ++++|.+++|+|.+||.+-|.-...+++++++|+|.|| +++++|.|||||+|||++.+..+|
T Consensus       241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah  319 (454)
T COG1249         241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAH  319 (454)
T ss_pred             EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHh
Confidence            887776777777775  79999999999999999966666666688999999999 555558999999999988887666


Q ss_pred             CCC
Q 022896          284 MIF  286 (290)
Q Consensus       284 ~~~  286 (290)
                      .+.
T Consensus       320 ~A~  322 (454)
T COG1249         320 VAM  322 (454)
T ss_pred             HHH
Confidence            544

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=7.8e-39  Score=277.27  Aligned_cols=269  Identities=24%  Similarity=0.292  Sum_probs=202.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc--------------C--Ccc---------ccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV--------------E--PSF---------GKR   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~--------------~--~~~---------~~~   65 (290)
                      .+|||+||||||+|+++|++|++ |++|+|||+++.+|+.+.......              .  ..+         ...
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA   83 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence            36999999999999999999986 999999999877776542211000              0  000         000


Q ss_pred             cccc------------ccccc--ccceEEeeeeeeeecce--EEecCce--EEeccEEEEccCCCCCCCC---chHHHHH
Q 022896           66 SVIN------------HTDYL--VNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVPK---TRTERLN  124 (290)
Q Consensus        66 ~~~~------------~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~~--~~~~~~vi~a~G~~~~~p~---~~~~~~~  124 (290)
                      .+..            +..++  .+++++.+.+..++.+.  +...++.  .+.||++|+|||+.|..|+   .....+.
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~  163 (461)
T PRK05249         84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIY  163 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEE
Confidence            0000            00111  14577788888888775  3344453  7899999999999987665   2222222


Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       125 ~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      +..........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.+++
T Consensus       164 ~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~  241 (461)
T PRK05249        164 DSDSILSLDHLPRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEK  241 (461)
T ss_pred             cHHHhhchhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence            333333334468999999999999999999986  589999999999999889999999999999999999999999999


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      ++.+++++.+.+.+|+++++|.+++|+|.+|+.+++.....++.++++|++.||+++|+ +.|+|||+|||++.+...+
T Consensus       242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~~~~  319 (461)
T PRK05249        242 VEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPSLAS  319 (461)
T ss_pred             EEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcccHh
Confidence            88766666677777888999999999999999887544444456778899999999998 7999999999998665443

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=7.3e-39  Score=276.31  Aligned_cols=265  Identities=22%  Similarity=0.268  Sum_probs=199.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh------------------hh-----hcCCc---cccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL------------------RA-----MVEPS---FGKR   65 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~------------------~~-----~~~~~---~~~~   65 (290)
                      +||++||||||+|++||.+|++ |++|+|||++ .+|+.+...                  ..     .+...   ....
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA   82 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence            6999999999999999999986 9999999996 445432110                  00     00000   0000


Q ss_pred             ccc--------c----ccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCchH-HHHHHHHHHH
Q 022896           66 SVI--------N----HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-ERLNQYQAEN  130 (290)
Q Consensus        66 ~~~--------~----~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~-~~~~~~~~~~  130 (290)
                      .+.        .    +...+  .+++++.+.+..+++.++.+ ++.++.||++|+|||++|..|+... ..........
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~  161 (450)
T PRK06116         83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSDGFF  161 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHhh
Confidence            000        0    00111  24678888888888887777 6778999999999999987665221 1111122222


Q ss_pred             HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC
Q 022896          131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  210 (290)
Q Consensus       131 ~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~  210 (290)
                      .....+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.|++++.+++
T Consensus       162 ~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~  239 (450)
T PRK06116        162 ALEELPKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD  239 (450)
T ss_pred             CccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC
Confidence            222357899999999999999999986  589999999998888888889999999999999999999999999976555


Q ss_pred             c-eeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          211 S-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       211 ~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      + +.+.+.+|+++++|.+++|+|..|+.+.+.....+++++++|++.||+++|+ ++|||||+|||++.+...
T Consensus       240 g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~  311 (450)
T PRK06116        240 GSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVELT  311 (450)
T ss_pred             ceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcCcH
Confidence            4 6677778889999999999999999886543334446788999999999997 799999999999765443

>PLN02507 glutathione reductase

Probab=100.00  E-value=1.9e-38  Score=275.08  Aligned_cols=270  Identities=20%  Similarity=0.223  Sum_probs=199.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC---------CCcccchhhhhh-----h-----------------c
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK---------EYFEITWASLRA-----M-----------------V   58 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~---------~~~~~~~~~~~~-----~-----------------~   58 (290)
                      ..+||++||||||+|+.+|.+|++ |.+|+|||+.         ..+|+.+.....     .                 +
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~  102 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW  102 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence            346999999999999999999986 9999999962         345544321000     0                 0


Q ss_pred             C-C---cccccccccc--------c----ccc--ccceEEeeeeeeeecce--EEecCce--EEeccEEEEccCCCCCCC
Q 022896           59 E-P---SFGKRSVINH--------T----DYL--VNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        59 ~-~---~~~~~~~~~~--------~----~~~--~~~~~~~~~v~~~~~~~--v~~~~~~--~~~~~~vi~a~G~~~~~p  116 (290)
                      . .   .+....+...        .    ..+  .+++++.+.+..++++.  +...++.  .+.||+||+|||++|..|
T Consensus       103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p  182 (499)
T PLN02507        103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP  182 (499)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence            0 0   0000000000        0    111  24678899999999884  4445654  588999999999997655


Q ss_pred             CchH-HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcE
Q 022896          117 KTRT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  195 (290)
Q Consensus       117 ~~~~-~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  195 (290)
                      +..+ ....+..........+++++|+|+|..|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+
T Consensus       183 ~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~  260 (499)
T PLN02507        183 NIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGIN  260 (499)
T ss_pred             CCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCE
Confidence            4211 1111222222223357899999999999999999986  589999999998888888899999999999999999


Q ss_pred             EEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccc
Q 022896          196 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  275 (290)
Q Consensus       196 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~  275 (290)
                      ++.++.|++++.+++++.+.+.+|+++++|.+++++|.+|+.+++.....+++++++|++.||+++|+ +.|||||+|||
T Consensus       261 i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv  339 (499)
T PLN02507        261 LHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDV  339 (499)
T ss_pred             EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEc
Confidence            99999999988666667777778888999999999999999887543333446678899999999998 89999999999


Q ss_pred             cCcccccc
Q 022896          276 TDIRVSAS  283 (290)
Q Consensus       276 ~~~~~~~~  283 (290)
                      ++.+...+
T Consensus       340 ~~~~~l~~  347 (499)
T PLN02507        340 TNRINLTP  347 (499)
T ss_pred             CCCCccHH
Confidence            98665444

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=1.5e-38  Score=273.57  Aligned_cols=267  Identities=21%  Similarity=0.209  Sum_probs=198.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCC---cccc--
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEP---SFGK--   64 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~---~~~~--   64 (290)
                      +||++||||||+|++||.++++ |++|+|+|++ .+|+.+.....                      .+..   .+..  
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK   80 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence            5999999999999999999986 9999999996 45544221000                      0000   0000  


Q ss_pred             ------ccccccc----ccc--ccceEEeeeeeeeecceEEe-cCceEEeccEEEEccCCCCCCCCchHH-HHHHHHHHH
Q 022896           65 ------RSVINHT----DYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTRTE-RLNQYQAEN  130 (290)
Q Consensus        65 ------~~~~~~~----~~~--~~~~~~~~~v~~~~~~~v~~-~~~~~~~~~~vi~a~G~~~~~p~~~~~-~~~~~~~~~  130 (290)
                            .....+.    ..+  .+++++.+.+..++++++.. .++..+.||++|+|||++|..|+..+. .........
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~  160 (446)
T TIGR01424        81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF  160 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence                  0000111    111  14678888888888875443 456789999999999999766542211 111112222


Q ss_pred             HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC
Q 022896          131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  210 (290)
Q Consensus       131 ~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~  210 (290)
                      .....+++++|+|+|..|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.++++|++++.++.+++++.+++
T Consensus       161 ~l~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  238 (446)
T TIGR01424       161 HLPTLPKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD  238 (446)
T ss_pred             cccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence            222357899999999999999999986  588999999999888888889999999999999999999999998876666


Q ss_pred             ceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          211 SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       211 ~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      +..+.+.+|+++++|.+++|+|..|+.+.+.....+++++++|++.||+++|+ ++|||||+|||++.+...+
T Consensus       239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~  310 (446)
T TIGR01424       239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRINLTP  310 (446)
T ss_pred             eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCccchh
Confidence            66677778888999999999999999876543334446788899999999998 7999999999998655444

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=2.4e-38  Score=272.45  Aligned_cols=269  Identities=22%  Similarity=0.255  Sum_probs=199.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC-cccchhhhhhhc----------CCcccc------cccccc----
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY-FEITWASLRAMV----------EPSFGK------RSVINH----   70 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~-~~~~~~~~~~~~----------~~~~~~------~~~~~~----   70 (290)
                      .|||+||||||+|++||++|++ |++|+|||+.+. +|+.+.......          ..++..      .....+    
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN   82 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence            5999999999999999999986 999999999763 565442111100          001100      000000    


Q ss_pred             -ccc--cccceEEeeeeeeeecce--EEecCce-EEeccEEEEccCCCCCCCCchH----HHHHHHHHHHHHHhcCCeEE
Q 022896           71 -TDY--LVNGRIVASPAINITENE--VLTAEGR-RVVYDYLVIATGHKDPVPKTRT----ERLNQYQAENQKIKSARSIL  140 (290)
Q Consensus        71 -~~~--~~~~~~~~~~v~~~~~~~--v~~~~~~-~~~~~~vi~a~G~~~~~p~~~~----~~~~~~~~~~~~~~~~~~v~  140 (290)
                       ...  ..+++++.+.+..++++.  +...++. ++.||++|+|||++|..|+..+    ..+.+..........+++++
T Consensus        83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~  162 (441)
T PRK08010         83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG  162 (441)
T ss_pred             HHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEE
Confidence             011  125678888888888774  3445564 6999999999999976554111    11222233333334578999


Q ss_pred             EEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc
Q 022896          141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD  220 (290)
Q Consensus       141 iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~  220 (290)
                      |+|+|..|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+++.++.+++++.+++.+.+.+.++ 
T Consensus       163 ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-  239 (441)
T PRK08010        163 ILGGGYIGVEFASMFAN--FGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-  239 (441)
T ss_pred             EECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-
Confidence            99999999999999986  589999999999888888888999999999999999999999998887665566665555 


Q ss_pred             EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccccCC
Q 022896          221 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI  285 (290)
Q Consensus       221 ~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~~~  285 (290)
                      ++++|.+++|+|.+|+.+++.....+++++++|++.||+++|+ ++|||||+|||++.+...+.+
T Consensus       240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~~~a  303 (441)
T PRK08010        240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGLQFTYIS  303 (441)
T ss_pred             eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCccchhHH
Confidence            5899999999999999887654444456778899999999998 799999999999977655543

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=4e-37  Score=253.03  Aligned_cols=264  Identities=31%  Similarity=0.437  Sum_probs=205.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc---cceEEeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV---NGRIVASPAI   85 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~   85 (290)
                      +++++||||||.+|+.+|..|.+   +.++++||+++++...+.............+...++...++   +++++.++|+
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~   81 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT   81 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence            36899999999999999999975   38999999999887665544444333333344444444443   4788999999


Q ss_pred             eeecc--eEEecCceEEeccEEEEccCCCCC---CCC-----chHHHHHHHHHHHHHH-------h------cCCeEEEE
Q 022896           86 NITEN--EVLTAEGRRVVYDYLVIATGHKDP---VPK-----TRTERLNQYQAENQKI-------K------SARSILIV  142 (290)
Q Consensus        86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~---~p~-----~~~~~~~~~~~~~~~~-------~------~~~~v~ii  142 (290)
                      .+|.+  +|.+.++..+.||++|+|+|+.+.   +|+     .....+++...+...+       .      .-..++|+
T Consensus        82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~Iv  161 (405)
T COG1252          82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIV  161 (405)
T ss_pred             EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEE
Confidence            99987  688888788999999999999954   444     1122222222222111       1      12369999


Q ss_pred             cCchhHHHHHHHHhhhCC-----------CCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc
Q 022896          143 GGGPTGVELAGEIAVDFP-----------EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS  211 (290)
Q Consensus       143 G~g~~~~~~a~~l~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~  211 (290)
                      |+|++|.|+|.+|.++..           ..+|+++++.+++++.+++++.....+.|++.||+++.++.|++++.+.  
T Consensus       162 GgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~--  239 (405)
T COG1252         162 GGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG--  239 (405)
T ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc--
Confidence            999999999999986421           2389999999999999999999999999999999999999998776543  


Q ss_pred             eeEEcCCCc-EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          212 DTYLTSTGD-TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       212 ~~v~~~~g~-~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                        +.+.+|+ +|+++.+||++|.++ .+++++. .+.+.+..|++.||+++|..++|+||++|||+..+..
T Consensus       240 --v~~~~g~~~I~~~tvvWaaGv~a-~~~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~  306 (405)
T COG1252         240 --VTLKDGEEEIPADTVVWAAGVRA-SPLLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP  306 (405)
T ss_pred             --EEEccCCeeEecCEEEEcCCCcC-Chhhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence              5666776 599999999999998 5677763 2246678899999999999999999999999998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=5e-38  Score=269.98  Aligned_cols=266  Identities=19%  Similarity=0.185  Sum_probs=195.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCCc----cccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEPS----FGKR   65 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~~----~~~~   65 (290)
                      +|||+||||||+|++||..|++ |++|+|||++. +|+.+.....                      .+...    ....
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP   80 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence            5999999999999999999986 99999999965 4543211000                      00000    0000


Q ss_pred             cccc------------ccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCC-CchHH-HHHHHHHH
Q 022896           66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTRTE-RLNQYQAE  129 (290)
Q Consensus        66 ~~~~------------~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p-~~~~~-~~~~~~~~  129 (290)
                      .+..            +...+  .+++++.+.....+...+.. ++..+.||++|+|||++|..| +.... ...+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~  159 (450)
T TIGR01421        81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGF  159 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHh
Confidence            0000            11111  14567777766666666655 556799999999999998766 32111 11111222


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCC
Q 022896          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  209 (290)
Q Consensus       130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~  209 (290)
                      ......+++++|||+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.+++++.++
T Consensus       160 ~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~  237 (450)
T TIGR01421       160 FALEELPKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV  237 (450)
T ss_pred             hCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC
Confidence            2222347899999999999999999986  58999999999998888999999999999999999999999999887654


Q ss_pred             Cc-eeEEcCCC-cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          210 GS-DTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       210 ~~-~~v~~~~g-~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      ++ ..+.+.+| +.+++|.|++|+|..|+.+++....++++++++|++.||+++|| ++|+|||+|||++.+...+
T Consensus       238 ~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~~~~  312 (450)
T TIGR01421       238 EGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVELTP  312 (450)
T ss_pred             CceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcccHH
Confidence            43 56666677 57999999999999999987654445557788999999999998 7999999999998765443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=6.1e-37  Score=261.77  Aligned_cols=262  Identities=26%  Similarity=0.329  Sum_probs=196.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ..+++|||||||.+|+++|..|.+ +++|+|||+++++.+.+.................++...+.  +..++.+.|+.+
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I   87 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV   87 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence            346899999999999999999976 79999999999876544332222222111222223333222  467899999999


Q ss_pred             ecc--eEEe----------cCceEEeccEEEEccCCCCC---CCCchH-----HHHHHHHHHHHHH--------------
Q 022896           88 TEN--EVLT----------AEGRRVVYDYLVIATGHKDP---VPKTRT-----ERLNQYQAENQKI--------------  133 (290)
Q Consensus        88 ~~~--~v~~----------~~~~~~~~~~vi~a~G~~~~---~p~~~~-----~~~~~~~~~~~~~--------------  133 (290)
                      +++  .+.+          .++.++.||+||+|||+.+.   +|+...     ..+.+.....+.+              
T Consensus        88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~  167 (424)
T PTZ00318         88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV  167 (424)
T ss_pred             EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence            976  4555          45678999999999999964   444211     1122222111111              


Q ss_pred             ---hcCCeEEEEcCchhHHHHHHHHhhhC------------CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896          134 ---KSARSILIVGGGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  198 (290)
Q Consensus       134 ---~~~~~v~iiG~g~~~~~~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  198 (290)
                         ...++++|+|+|.+|+|+|..|.+..            .+.+|+++++.+.+++.+++.+.+.+.+.++++||+++.
T Consensus       168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~  247 (424)
T PTZ00318        168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRT  247 (424)
T ss_pred             HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence               12258999999999999999987631            368899999999888888889999999999999999999


Q ss_pred             CceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896          199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                      ++.|+++..+    .+.+.+|+++++|.+|+++|.+|+ +++...++  +++++|++.||+++|++++|||||+|||+..
T Consensus       248 ~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l--~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~  320 (424)
T PTZ00318        248 KTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKV--DKTSRGRISVDDHLRVKPIPNVFALGDCAAN  320 (424)
T ss_pred             CCeEEEEeCC----EEEECCCCEEEccEEEEccCCCCc-chhhhcCC--cccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence            9999877532    356778889999999999999986 57777655  5678899999999997789999999999986


Q ss_pred             c
Q 022896          279 R  279 (290)
Q Consensus       279 ~  279 (290)
                      +
T Consensus       321 ~  321 (424)
T PTZ00318        321 E  321 (424)
T ss_pred             C
Confidence            4

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=4e-37  Score=264.31  Aligned_cols=266  Identities=23%  Similarity=0.318  Sum_probs=198.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccchh-------h-----------hh----hhcC-C----ccc--
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWA-------S-----------LR----AMVE-P----SFG--   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~~~-------~-----------~~----~~~~-~----~~~--   63 (290)
                      +||++||||||+|.+||..+ .|.+|+|+|++.. |+.+.       .           ..    ..+. .    ++.  
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~~-GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   78 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGTF-GGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI   78 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCC-CCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence            38999999999999999774 4999999999753 32110       0           00    0011 0    000  


Q ss_pred             ----cccccc-----cccc-c--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCch---HHHHHHHHH
Q 022896           64 ----KRSVIN-----HTDY-L--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---TERLNQYQA  128 (290)
Q Consensus        64 ----~~~~~~-----~~~~-~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~---~~~~~~~~~  128 (290)
                          ......     ...+ +  .+++++.+.+..++++++.+.++..+.||++|+|||++|..|+..   ...+.....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~  158 (451)
T PRK07846         79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT  158 (451)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHH
Confidence                000000     0111 1  356788899888888888888777899999999999998766522   111222233


Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccC
Q 022896          129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  208 (290)
Q Consensus       129 ~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~  208 (290)
                      .......+++++|+|+|+.|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+ +.|++++.++.+++++.+
T Consensus       159 ~~~l~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        159 IMRLPELPESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             HhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence            33333457999999999999999999986  589999999999888888888887776654 568999999999988766


Q ss_pred             CCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccccC
Q 022896          209 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  284 (290)
Q Consensus       209 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~~  284 (290)
                      ++++.+.+.+|+++++|.+++|+|.+|+.+++.....+++++++|++.||+++|+ ++|||||+|||++.+..++.
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~l~~~  310 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQLKHV  310 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCccChhH
Confidence            6666677778889999999999999999998764445557788999999999997 79999999999987655543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.8e-37  Score=268.64  Aligned_cols=266  Identities=22%  Similarity=0.267  Sum_probs=195.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc----------------------C---Cccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV----------------------E---PSFGKR   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~----------------------~---~~~~~~   65 (290)
                      ..||++||||||+|++||..|++ |++|+|+|++. +|+.+.......                      .   ..+...
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK   81 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence            36999999999999999999986 99999999987 665432211100                      0   000000


Q ss_pred             cccc------------ccccc--ccceEEeeeeeeeecceEEec--C-ceEEeccEEEEccCCCCCCCC-ch--HHHHHH
Q 022896           66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTA--E-GRRVVYDYLVIATGHKDPVPK-TR--TERLNQ  125 (290)
Q Consensus        66 ~~~~------------~~~~~--~~~~~~~~~v~~~~~~~v~~~--~-~~~~~~~~vi~a~G~~~~~p~-~~--~~~~~~  125 (290)
                      .+..            +...+  .+++++.+.+..++++.+...  + +..+.||+||+|||++|..|+ ..  ...+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~  161 (462)
T PRK06416         82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT  161 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence            0011            11111  246788888888887755443  2 367999999999999986543 21  111222


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      ..........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.++++
T Consensus       162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i  239 (462)
T PRK06416        162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV  239 (462)
T ss_pred             chHhhCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            22222222356899999999999999999986  4889999999999888888899999999999999999999999999


Q ss_pred             ccCCCceeEEcCCC---cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          206 SVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       206 ~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +.+++.+.+.+.+|   +++++|.+++|+|.+|+.+++.....+++++ +|++.||+++|+ +.|+|||+|||+..+...
T Consensus       240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~  317 (462)
T PRK06416        240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGPMLA  317 (462)
T ss_pred             EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCcchH
Confidence            87666666665555   6799999999999999988763222333556 899999999997 799999999999765433

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2e-37  Score=267.72  Aligned_cols=266  Identities=17%  Similarity=0.211  Sum_probs=196.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC---Ccccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE---PSFGKRS   66 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~---~~~~~~~   66 (290)
                      +||++||||||+|+++|..|++ |++|+|||+++.+|+.+.....                      .+.   .......
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   83 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDK   83 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence            6999999999999999999986 9999999998766654311100                      000   0000000


Q ss_pred             ccccc------------ccc--ccceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCCCC-CCCc--hHHHHHH
Q 022896           67 VINHT------------DYL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDP-VPKT--RTERLNQ  125 (290)
Q Consensus        67 ~~~~~------------~~~--~~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~~~-~p~~--~~~~~~~  125 (290)
                      .....            ..+  .+++++.+.+..++++.+..  .++  .++.||++|+|||++|. .|..  ....+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~  163 (471)
T PRK06467         84 MRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWD  163 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEEC
Confidence            00000            011  14678888888888776443  345  47899999999999985 3431  1111222


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      ..........+++++|+|+|..|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++. ++++.++.++.+
T Consensus       164 ~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i  240 (471)
T PRK06467        164 STDALELKEVPKRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAV  240 (471)
T ss_pred             hHHhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEE
Confidence            22222222456899999999999999999986  589999999999998889999999999999988 999999999988


Q ss_pred             ccCCCceeEEcCC--C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          206 SVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       206 ~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +.+++...+.+.+  +  +++++|.+++|+|..|+.+++.....+++++++|++.||+++|+ ++|+|||+|||++.+..
T Consensus       241 ~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~l  319 (471)
T PRK06467        241 EAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPML  319 (471)
T ss_pred             EEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCccc
Confidence            8766665555433  2  36999999999999999987655555557788999999999998 89999999999976544


Q ss_pred             c
Q 022896          282 A  282 (290)
Q Consensus       282 ~  282 (290)
                      .
T Consensus       320 a  320 (471)
T PRK06467        320 A  320 (471)
T ss_pred             H
Confidence            3

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=5.9e-37  Score=265.21  Aligned_cols=267  Identities=21%  Similarity=0.219  Sum_probs=192.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC----Ccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE----PSFGK   64 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~----~~~~~   64 (290)
                      .+|||+||||||+|++||.+|++ |++|+|||+... |+.+.....                      .+.    .....
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL-GGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF   82 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc-CCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence            36999999999999999999986 999999999753 332211100                      000    00000


Q ss_pred             ccc------------cccccccc---cceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCC---chHHHHHHH
Q 022896           65 RSV------------INHTDYLV---NGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK---TRTERLNQY  126 (290)
Q Consensus        65 ~~~------------~~~~~~~~---~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~  126 (290)
                      ..+            ..+..+++   +++++.+....++..++.. ++.++.||++|+|||++|..|+   .....+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~  161 (463)
T PRK06370         83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYLTN  161 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEcc
Confidence            000            01111221   4667777766666666666 4567999999999999977655   221112222


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .........+++++|+|+|..|+|+|..+..  .+.+|+++++.+.+++..++++.+.+.+.+++.|++++.++.+.+++
T Consensus       162 ~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~  239 (463)
T PRK06370        162 ETIFSLDELPEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVE  239 (463)
T ss_pred             hHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence            2222222357999999999999999999986  58899999999988888888899999999999999999999999887


Q ss_pred             cCCCceeEEc---CCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          207 VSEGSDTYLT---STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       207 ~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      .++++..+..   .+++++++|.|++|+|.+|+.+.+.....+++++++|++.||+++|+ +.|+|||+|||++.+...+
T Consensus       240 ~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~~~~~  318 (463)
T PRK06370        240 RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRGAFTH  318 (463)
T ss_pred             EcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCcccHH
Confidence            6655544432   23457999999999999999874322223346678899999999998 7999999999998765544

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1e-36  Score=262.11  Aligned_cols=267  Identities=18%  Similarity=0.218  Sum_probs=194.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC-cccchhhhhhhc----------CCccccc------cccc----c
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY-FEITWASLRAMV----------EPSFGKR------SVIN----H   70 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~-~~~~~~~~~~~~----------~~~~~~~------~~~~----~   70 (290)
                      +|||+||||||+|++||.+|++ |++|+|||+++. +|+.+.......          ..++...      ...+    .
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN   82 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999986 999999999864 454321110000          0011000      0000    0


Q ss_pred             cccc--ccceEEeeeeeeeecceEEecC---ceEEeccEEEEccCCCCCCC---Cc-hHHHHHHHHHHHHHHhcCCeEEE
Q 022896           71 TDYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVP---KT-RTERLNQYQAENQKIKSARSILI  141 (290)
Q Consensus        71 ~~~~--~~~~~~~~~v~~~~~~~v~~~~---~~~~~~~~vi~a~G~~~~~p---~~-~~~~~~~~~~~~~~~~~~~~v~i  141 (290)
                      .+.+  .+++++.+.+..++..++....   ..++.||++|+|||++|..|   +. ....+.+..........+++++|
T Consensus        83 ~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvI  162 (438)
T PRK07251         83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGI  162 (438)
T ss_pred             HHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEE
Confidence            0111  2467777877777766665532   34789999999999997544   42 11222233333333346789999


Q ss_pred             EcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcE
Q 022896          142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT  221 (290)
Q Consensus       142 iG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~  221 (290)
                      ||+|..|+|+|..+..  .+.+|+++++.+.+++..++.+...+.+.+++.|++++.++.+++++.+++.+.+.. +|++
T Consensus       163 IGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~  239 (438)
T PRK07251        163 IGGGNIGLEFAGLYNK--LGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDET  239 (438)
T ss_pred             ECCCHHHHHHHHHHHH--cCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeE
Confidence            9999999999999986  588999999999888888888888899999999999999999998876555555543 5668


Q ss_pred             EeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          222 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       222 ~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      +++|.+++|+|..|+.+.+......+.++++|++.||+++|+ +.|||||+|||++.+...+
T Consensus       240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~~~~  300 (438)
T PRK07251        240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFTY  300 (438)
T ss_pred             EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcccHh
Confidence            999999999999999876554334445678899999999998 7999999999998754433

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.7e-36  Score=263.96  Aligned_cols=268  Identities=18%  Similarity=0.176  Sum_probs=196.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC---------CCcccchhhh------------------h----hhcC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK---------EYFEITWASL------------------R----AMVE   59 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~---------~~~~~~~~~~------------------~----~~~~   59 (290)
                      .+|||+||||||+|+.||..|++ |.+|+|+|+.         ..+|+.+...                  .    ..+.
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~  157 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK  157 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence            35999999999999999999986 9999999962         2233321100                  0    0000


Q ss_pred             ------Cccc------ccccc----cccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCchH-
Q 022896           60 ------PSFG------KRSVI----NHTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-  120 (290)
Q Consensus        60 ------~~~~------~~~~~----~~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~-  120 (290)
                            .++.      .....    .+...+  .+++++.+.++.++++.+.. ++..+.||++|+|||++|..|+..+ 
T Consensus       158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG~  236 (558)
T PLN02546        158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPGI  236 (558)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCCh
Confidence                  0000      00000    111112  14688899999999887766 5678999999999999977665221 


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCc
Q 022896          121 ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      ..+............+++++|||+|..|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.++++||+++.++
T Consensus       237 ~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~  314 (558)
T PLN02546        237 EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEE  314 (558)
T ss_pred             hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCC
Confidence            2222333333333467999999999999999999986  58899999999988888899999999999999999999999


Q ss_pred             eEeecccCCC-ceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          201 RVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       201 ~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      .+.++..+++ .+.+.+.+++...+|.+++++|..|+.+++....++++++++|+|.||+++|+ ++|+|||+|||++.+
T Consensus       315 ~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~  393 (558)
T PLN02546        315 SPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRI  393 (558)
T ss_pred             EEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCc
Confidence            9988865433 35555555554558999999999999887533333446678899999999998 899999999999876


Q ss_pred             cccc
Q 022896          280 VSAS  283 (290)
Q Consensus       280 ~~~~  283 (290)
                      ...+
T Consensus       394 ~l~~  397 (558)
T PLN02546        394 NLTP  397 (558)
T ss_pred             ccHH
Confidence            5544

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=1.1e-35  Score=252.29  Aligned_cols=261  Identities=20%  Similarity=0.288  Sum_probs=194.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhhh-hhhcCCcccccccccccccc--ccceEEee-eee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASL-RAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAI   85 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~v~   85 (290)
                      ..+|+|||||+||++||..|++ +  .+|+|++++..+.+....+ .................+++  .++++..+ .|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4689999999999999999975 4  5899999998765432212 11111111111111111222  24566644 677


Q ss_pred             eeecc--eEEecCceEEeccEEEEccCCCCCCCC---c------hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896           86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---T------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (290)
Q Consensus        86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~------~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~  154 (290)
                      .+++.  .+.+.++..+.||+||+|||++|..++   .      ....+.+...+...+..+++++|+|+|..|+|+|..
T Consensus        83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~  162 (396)
T PRK09754         83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS  162 (396)
T ss_pred             EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence            88775  577778889999999999999975432   1      111233444444555678999999999999999999


Q ss_pred             HhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          155 IAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       155 l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      +..  .+.+|+++++.+.++.. +++.....+.+.++++||+++.++.+++++. ++...+.+.+|+++++|.+++++|.
T Consensus       163 l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~  239 (396)
T PRK09754        163 ATQ--RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI  239 (396)
T ss_pred             HHH--cCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence            986  48899999998887654 5677888899999999999999999988865 4446677788989999999999999


Q ss_pred             CCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          234 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       234 ~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +|+..++...++.    .++.+.||+++|+ +.|||||+|||+..+..
T Consensus       240 ~pn~~l~~~~gl~----~~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~  282 (396)
T PRK09754        240 SANDQLAREANLD----TANGIVIDEACRT-CDPAIFAGGDVAITRLD  282 (396)
T ss_pred             ChhhHHHHhcCCC----cCCCEEECCCCcc-CCCCEEEccceEeeeCC
Confidence            9998888776653    2456999999998 79999999999976554

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1e-35  Score=255.30  Aligned_cols=257  Identities=17%  Similarity=0.290  Sum_probs=193.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc-cccccc--ccccc--ccceE-Eeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVIN--HTDYL--VNGRI-VASPA   84 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~--~~~~~-~~~~v   84 (290)
                      ++|+|||||++|++||..|++   +++|+|||+++.+.+....+......... ......  ...+.  .++++ ..+.|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            589999999999999999964   68999999998776554333222221111 111111  11221  24555 35789


Q ss_pred             eeeecc--eEEecCc-----eEEeccEEEEccCCCCCCCCch------HHHHHHHHHHHHHH--hcCCeEEEEcCchhHH
Q 022896           85 INITEN--EVLTAEG-----RRVVYDYLVIATGHKDPVPKTR------TERLNQYQAENQKI--KSARSILIVGGGPTGV  149 (290)
Q Consensus        85 ~~~~~~--~v~~~~~-----~~~~~~~vi~a~G~~~~~p~~~------~~~~~~~~~~~~~~--~~~~~v~iiG~g~~~~  149 (290)
                      ..++++  .+.+.++     .++.||++|+|||++|..|+..      ...+.+.....+.+  ..+++++|+|+|..|+
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~  161 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL  161 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence            999876  4544332     2478999999999998877622      12233333333322  2468999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEE
Q 022896          150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL  229 (290)
Q Consensus       150 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~  229 (290)
                      |+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+++.++.+++++.  .  .+.+.+|+++++|.+++
T Consensus       162 E~A~~l~~--~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~  235 (438)
T PRK13512        162 EVLENLYE--RGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIE  235 (438)
T ss_pred             HHHHHHHh--CCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEE
Confidence            99999986  588999999999888888889999999999999999999999988753  2  45566788899999999


Q ss_pred             ccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          230 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       230 a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      |+|.+|+.++++..++  +++++|++.||+++|+ ++|+|||+|||+..+
T Consensus       236 a~G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~  282 (438)
T PRK13512        236 GVGTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITSH  282 (438)
T ss_pred             CcCCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEee
Confidence            9999999999887765  5577899999999997 799999999998743

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=1e-36  Score=263.92  Aligned_cols=265  Identities=24%  Similarity=0.284  Sum_probs=193.4

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh--------------hhhcC------------Cccc---
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL--------------RAMVE------------PSFG---   63 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~--------------~~~~~------------~~~~---   63 (290)
                      ||++||||||+|++||.+|++ |.+|+|||++. +|+.|...              .....            .++.   
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            699999999999999999986 99999999976 45443210              00000            0000   


Q ss_pred             ---cccccc-----cccccc--cceEEeeeeeeeecceEEecCc-eEEeccEEEEccCCCCCCCC---chHHHHHHHHHH
Q 022896           64 ---KRSVIN-----HTDYLV--NGRIVASPAINITENEVLTAEG-RRVVYDYLVIATGHKDPVPK---TRTERLNQYQAE  129 (290)
Q Consensus        64 ---~~~~~~-----~~~~~~--~~~~~~~~v~~~~~~~v~~~~~-~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~~~~  129 (290)
                         .+....     +...+.  +++++.+.+...+..++...++ ..+.+|++|+|||+.|..|+   .....+.+....
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~  159 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA  159 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence               000000     111121  4577888888888777777665 36899999999999976554   221112222222


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCC
Q 022896          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  209 (290)
Q Consensus       130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~  209 (290)
                      ......+++++|||+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+++.++.|++++.++
T Consensus       160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~  237 (463)
T TIGR02053       160 LALDRIPESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG  237 (463)
T ss_pred             hCcccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence            2222346899999999999999999986  58899999999988888888999999999999999999999999887665


Q ss_pred             CceeEEcC---CCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          210 GSDTYLTS---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       210 ~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +...+.+.   +++++++|.+++|+|.+|+.+.+.....+++++++|++.||+++|+ +.|+|||+|||++.+...
T Consensus       238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~~~~  312 (463)
T TIGR02053       238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQLE  312 (463)
T ss_pred             CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCcccH
Confidence            55444432   2357999999999999999874322233346678899999999998 799999999999876543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=1.4e-35  Score=250.49  Aligned_cols=260  Identities=24%  Similarity=0.355  Sum_probs=196.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc-ccccc-ccccccc--cceEE-eeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVI-NHTDYLV--NGRIV-ASPA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~~~~-~~~v   84 (290)
                      +++++|||||+||+++|..|++   +.+|+||++++...+.-..+......... .+... ...+++.  +++++ ...|
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V   81 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWV   81 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence            4699999999999999999964   68999999988654322222222111111 11111 1222222  45655 5678


Q ss_pred             eeeecc--eEEecCceEEeccEEEEccCCCCCCCC---c----hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHH
Q 022896           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---T----RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI  155 (290)
Q Consensus        85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~----~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l  155 (290)
                      +.++++  .+.+ ++..+.||+||+|||+.|..|+   .    ....+..+.........+++++|+|+|.+|+|+|..|
T Consensus        82 ~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L  160 (377)
T PRK04965         82 TDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDL  160 (377)
T ss_pred             EEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            888876  3444 6678999999999999976554   1    1223444544555556789999999999999999999


Q ss_pred             hhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          156 AVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       156 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      ..  .+.+|+++++.+.+++. +++.+...+.+.+++.|++++.++.++++..+++...+.+.+|+++++|.+|+|+|.+
T Consensus       161 ~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~  238 (377)
T PRK04965        161 CR--AGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR  238 (377)
T ss_pred             Hh--cCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence            86  48899999998887655 4677888899999999999999999998887666677788889999999999999999


Q ss_pred             CCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          235 VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       235 ~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      |+..+++..++..   .+| +.||+++|+ +.|||||+|||+..+.
T Consensus       239 p~~~l~~~~gl~~---~~g-i~vd~~l~t-s~~~VyA~GD~a~~~~  279 (377)
T PRK04965        239 PNTALARRAGLAV---NRG-IVVDSYLQT-SAPDIYALGDCAEING  279 (377)
T ss_pred             cchHHHHHCCCCc---CCC-EEECCCccc-CCCCEEEeeecEeECC
Confidence            9988888777643   244 999999998 7999999999998653

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=2.4e-36  Score=260.32  Aligned_cols=271  Identities=22%  Similarity=0.216  Sum_probs=198.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCC--------CCcccchhhh------------------hh----hcC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPK--------EYFEITWASL------------------RA----MVE   59 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~--------~~~~~~~~~~------------------~~----~~~   59 (290)
                      .+||++||||||+|+.||..+++  |.+|+|||++        ..+|+.+...                  ..    .+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            36999999999999999999975  7999999984        3444321100                  00    000


Q ss_pred             C-----cccccccc------------cccccc---ccceEEeeeeeeeecceEEecC--------ceEEeccEEEEccCC
Q 022896           60 P-----SFGKRSVI------------NHTDYL---VNGRIVASPAINITENEVLTAE--------GRRVVYDYLVIATGH  111 (290)
Q Consensus        60 ~-----~~~~~~~~------------~~~~~~---~~~~~~~~~v~~~~~~~v~~~~--------~~~~~~~~vi~a~G~  111 (290)
                      .     ........            ....++   .+++++.+....++++++....        ...+.||++|+|||+
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs  161 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS  161 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence            0     00000000            011122   2578889998888888765532        247999999999999


Q ss_pred             CCCCCCchH-HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCccccccCChhHHHHHHHHH
Q 022896          112 KDPVPKTRT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL  189 (290)
Q Consensus       112 ~~~~p~~~~-~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  189 (290)
                      +|..|+..+ ...............+++++|||+|..|+|+|..+... ..+.+|+++++.+.+++.+++++.+.+.+.+
T Consensus       162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L  241 (486)
T TIGR01423       162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL  241 (486)
T ss_pred             CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence            987665221 11222222222223579999999999999999877542 1378999999999988889999999999999


Q ss_pred             HhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCC
Q 022896          190 ISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN  268 (290)
Q Consensus       190 ~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~  268 (290)
                      ++.||+++.++.+++++.++++ ..+.+.+|+++++|.+++|+|..|+..++.....+++++++|++.||+++|+ +.||
T Consensus       242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~  320 (486)
T TIGR01423       242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN  320 (486)
T ss_pred             HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence            9999999999999988765443 5666667888999999999999999887654444456788899999999997 7999


Q ss_pred             eEEeccccCcccccc
Q 022896          269 IFAIGDITDIRVSAS  283 (290)
Q Consensus       269 vfa~Gd~~~~~~~~~  283 (290)
                      |||+|||++.+...+
T Consensus       321 IyA~GDv~~~~~l~~  335 (486)
T TIGR01423       321 IYAIGDVTDRVMLTP  335 (486)
T ss_pred             EEEeeecCCCcccHH
Confidence            999999998765443

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=1.1e-35  Score=269.42  Aligned_cols=264  Identities=18%  Similarity=0.281  Sum_probs=205.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-----CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEee-ee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVAS-PA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-----g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~v   84 (290)
                      +++++|||+|++|+.+|..|.+     +++|+||++++.+.+....+.................+++.  +++++.+ .|
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            3589999999999999999942     58999999999877554444433332222222222223332  4566654 68


Q ss_pred             eeeecc--eEEecCceEEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 022896           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (290)
Q Consensus        85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~  153 (290)
                      ..++++  .|.+.++.++.||+||+|||++|..|+   ..      ...+.+...+......+++++|||+|..|+|+|.
T Consensus        83 ~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~  162 (847)
T PRK14989         83 ITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG  162 (847)
T ss_pred             EEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHH
Confidence            888876  467778888999999999999976543   21      1234445555555567899999999999999999


Q ss_pred             HHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCC--CceeEEcCCCcEEeccEEEEc
Q 022896          154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLC  230 (290)
Q Consensus       154 ~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a  230 (290)
                      .|..  .+.+|+++++.+.+++ .+++.....+.+.+++.||+++.++.++++..++  ....+.+.+|+++++|.|++|
T Consensus       163 ~L~~--~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A  240 (847)
T PRK14989        163 ALKN--LGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS  240 (847)
T ss_pred             HHHH--cCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEEC
Confidence            9997  4889999999988766 5788899999999999999999999998886543  235677789999999999999


Q ss_pred             cCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          231 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       231 ~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +|.+|+..+++..++  +++++|+|.||+++|+ +.|+|||+|||+..+..
T Consensus       241 ~G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~  288 (847)
T PRK14989        241 TGIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNR  288 (847)
T ss_pred             CCcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCc
Confidence            999999998877776  4578899999999998 79999999999987653

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=5.5e-36  Score=265.34  Aligned_cols=266  Identities=21%  Similarity=0.245  Sum_probs=193.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh---------------------h--hcC---Ccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR---------------------A--MVE---PSFGK   64 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~---------------------~--~~~---~~~~~   64 (290)
                      ..|||+||||||+|+++|.+|++ |.+|+|||++ .+|+.|....                     .  .+.   +....
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  175 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR  175 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence            46999999999999999999986 9999999998 5565442110                     0  000   00000


Q ss_pred             cccc--------c-----ccccc---ccceEEeeeeeeeecceE--EecCc--eEEeccEEEEccCCCCCCCCchH---H
Q 022896           65 RSVI--------N-----HTDYL---VNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVPKTRT---E  121 (290)
Q Consensus        65 ~~~~--------~-----~~~~~---~~~~~~~~~v~~~~~~~v--~~~~~--~~~~~~~vi~a~G~~~~~p~~~~---~  121 (290)
                      ..+.        .     +...+   .+++++.+.+..++++.+  ...++  .++.||++|+|||++|..|+..+   .
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~  255 (561)
T PRK13748        176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET  255 (561)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence            0000        0     01111   146788888888887754  33444  36999999999999977665211   1


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCce
Q 022896          122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      .+............+++++|||+|.+|+|+|..+..  .+.+|+++.+. .++..+++++.+.+.+.+++.||+++.++.
T Consensus       256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~  332 (561)
T PRK13748        256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFAR--LGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ  332 (561)
T ss_pred             ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence            111111122222356899999999999999999986  58999999985 455567889999999999999999999999


Q ss_pred             EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +++++.+++.+.+.+.++ ++++|.+++|+|.+|+..++.....+++++++|++.||+++|+ +.|||||+|||++.+..
T Consensus       333 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~~  410 (561)
T PRK13748        333 ASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQF  410 (561)
T ss_pred             EEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCccc
Confidence            998877666666666555 6999999999999999887543334446778899999999998 79999999999987654


Q ss_pred             cc
Q 022896          282 AS  283 (290)
Q Consensus       282 ~~  283 (290)
                      .+
T Consensus       411 ~~  412 (561)
T PRK13748        411 VY  412 (561)
T ss_pred             hh
Confidence            44

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=8.3e-36  Score=256.43  Aligned_cols=265  Identities=21%  Similarity=0.327  Sum_probs=195.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccchh-------hh-----------h----hhcC-----Cccc--
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWA-------SL-----------R----AMVE-----PSFG--   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~~~-------~~-----------~----~~~~-----~~~~--   63 (290)
                      +||++||||||+|..+|..+ .|.+|+|+|++.. |+.+.       ..           .    ..+.     .++.  
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~~-GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~   79 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGTF-GGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI   79 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCC-CCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence            59999999999999997655 4999999998653 32110       00           0    0000     0000  


Q ss_pred             --------ccccccc-ccc-c----ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCc-hH--HHHHHH
Q 022896           64 --------KRSVINH-TDY-L----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT-RT--ERLNQY  126 (290)
Q Consensus        64 --------~~~~~~~-~~~-~----~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~-~~--~~~~~~  126 (290)
                              ...+... ..+ .    .+++++.+.....+..++.+.++.++.||++|+|||++|..|+. ..  ..+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~  159 (452)
T TIGR03452        80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTN  159 (452)
T ss_pred             HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcH
Confidence                    0000000 011 1    35778888888888778888778789999999999999887751 11  112222


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .........+++++|+|+|+.++|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+ +.+++++.++.+++++
T Consensus       160 ~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~  236 (452)
T TIGR03452       160 EDIMRLPELPESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVE  236 (452)
T ss_pred             HHHHhhhhcCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEE
Confidence            2333323357999999999999999999986  589999999998888778888887777654 4689999999999988


Q ss_pred             cCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          207 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       207 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      .+++++.+.+.+|+++++|.+++|+|..|+.+++.....+++++++|++.||+++|| ++|+|||+|||++.+...+
T Consensus       237 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~  312 (452)
T TIGR03452       237 QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQLKH  312 (452)
T ss_pred             EcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcccChh
Confidence            766667777777888999999999999999988655444556788899999999997 8999999999998765554

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=6.8e-36  Score=258.61  Aligned_cols=267  Identities=20%  Similarity=0.249  Sum_probs=193.1

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh-----------------------hcC---Ccc
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-----------------------MVE---PSF   62 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~-----------------------~~~---~~~   62 (290)
                      ...++||+||||||+|+++|.+|++ |.+|+|||++. +|+.|.....                       .+.   +..
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~   81 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV   81 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence            3457999999999999999999986 99999999974 4543321100                       000   000


Q ss_pred             ccccc--------cc-----ccccc---ccceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCCCCC---ch
Q 022896           63 GKRSV--------IN-----HTDYL---VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK---TR  119 (290)
Q Consensus        63 ~~~~~--------~~-----~~~~~---~~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~~p~---~~  119 (290)
                      ....+        ..     +...+   .+++++.+.+..++++.  +.+.++  .++.||+||+|||++|..|+   ..
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~  161 (468)
T PRK14694         82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLA  161 (468)
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCC
Confidence            00000        00     00111   24678889999998873  555555  47999999999999976554   21


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeC
Q 022896          120 TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      ...+............+++++|+|+|..|+|+|..+..  .+.+|+++.+. ++++.+++++.+.+.+.+++.||+++.+
T Consensus       162 ~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~-~~l~~~~~~~~~~l~~~l~~~GI~v~~~  238 (468)
T PRK14694        162 ETPYLTSTSALELDHIPERLLVIGASVVALELAQAFAR--LGSRVTVLARS-RVLSQEDPAVGEAIEAAFRREGIEVLKQ  238 (468)
T ss_pred             CCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEECC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence            11111111222222347899999999999999999986  58899999874 5666778889999999999999999999


Q ss_pred             ceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          200 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +.+++++.+++.+.+.+.++ ++++|.+++|+|.+|+.+++....++++. ++|++.||+++|+ +.|+|||+|||++.+
T Consensus       239 ~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~~  315 (468)
T PRK14694        239 TQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQP  315 (468)
T ss_pred             CEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCCc
Confidence            99998876665555655444 79999999999999999876433344443 5789999999998 799999999999876


Q ss_pred             cccc
Q 022896          280 VSAS  283 (290)
Q Consensus       280 ~~~~  283 (290)
                      ...+
T Consensus       316 ~~~~  319 (468)
T PRK14694        316 QFVY  319 (468)
T ss_pred             ccHH
Confidence            5443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=5.9e-36  Score=259.05  Aligned_cols=267  Identities=19%  Similarity=0.215  Sum_probs=188.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh--------------cCC-----cccccccccc--
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM--------------VEP-----SFGKRSVINH--   70 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~--   70 (290)
                      +||++||||||+|++||.+|++ |++|+|||++.. |+.+......              ...     .........+  
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~-GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   82 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW-GGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA   82 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC-CCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence            5999999999999999999986 999999999743 3221111000              000     0000000000  


Q ss_pred             ----------------cccc--ccceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCCCCCC-Cch-HHHHHHH
Q 022896           71 ----------------TDYL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPVP-KTR-TERLNQY  126 (290)
Q Consensus        71 ----------------~~~~--~~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~~~~p-~~~-~~~~~~~  126 (290)
                                      ...+  .+++.+.+....++...+..  .++  .++.||++|+|||+.|..| +.. ...+..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~  162 (466)
T PRK07818         83 AFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTY  162 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEch
Confidence                            0001  13456666666677665433  343  4789999999999998654 321 1112222


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .........+++++|+|+|..|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.++++||+++.++.|++++
T Consensus       163 ~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~  240 (466)
T PRK07818        163 EEQILSRELPKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESID  240 (466)
T ss_pred             HHHhccccCCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            2222222357899999999999999999986  58899999999998888888999999999999999999999999887


Q ss_pred             cCCCceeEEcC--CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          207 VSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       207 ~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      .+++.+.+.+.  +|  +++++|.+++|+|..|+.+.+.....++.++++|++.||+++|+ +.|+|||+|||++.+...
T Consensus       241 ~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~~l~  319 (466)
T PRK07818        241 DNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKLQLA  319 (466)
T ss_pred             EeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCcccH
Confidence            65555444432  56  37999999999999999886433333446678899999999998 799999999999765443


Q ss_pred             c
Q 022896          283 S  283 (290)
Q Consensus       283 ~  283 (290)
                      +
T Consensus       320 ~  320 (466)
T PRK07818        320 H  320 (466)
T ss_pred             h
Confidence            3

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=8.3e-36  Score=258.32  Aligned_cols=265  Identities=26%  Similarity=0.359  Sum_probs=194.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh------------------hhh----cC---Ccccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL------------------RAM----VE---PSFGKRS   66 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~------------------~~~----~~---~~~~~~~   66 (290)
                      +||++||||||+|+++|.+|++ |.+|+|||+ +.+|+.|...                  ...    +.   .......
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   81 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK   81 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence            5999999999999999999986 999999999 4555544210                  000    00   0000000


Q ss_pred             cccc-------------cc--ccccceEEeeeeeeeecceEEecCceEEeccEEEEccCCC-CCCCCch---HHHHHHHH
Q 022896           67 VINH-------------TD--YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTR---TERLNQYQ  127 (290)
Q Consensus        67 ~~~~-------------~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~-~~~p~~~---~~~~~~~~  127 (290)
                      ....             ..  ...+++++.+.+..+++..+.+ ++.++.||++|+|||+. |.+|+..   ...+....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~~  160 (460)
T PRK06292         82 VMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSD  160 (460)
T ss_pred             HHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECch
Confidence            0000             00  1123566777777777776666 66789999999999999 8888742   12222222


Q ss_pred             HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeeccc
Q 022896          128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  207 (290)
Q Consensus       128 ~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~  207 (290)
                      ........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.++++ |+++.++.+.+++.
T Consensus       161 ~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~  237 (460)
T PRK06292        161 DAFELDKLPKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEK  237 (460)
T ss_pred             HHhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEE
Confidence            232223467999999999999999999986  589999999999888888889999999999999 99999999998876


Q ss_pred             CCC-ceeEEcCCC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          208 SEG-SDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       208 ~~~-~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      +++ .+.+...++  +++++|.+++|+|..|+.+.+.....+++++++|++.||+++|+ +.|+|||+|||++.+...+
T Consensus       238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~~~~  315 (460)
T PRK06292        238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPPLLH  315 (460)
T ss_pred             cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCccchh
Confidence            544 344433233  47999999999999999886543334446678899999999998 7999999999998765443

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=8.7e-36  Score=257.44  Aligned_cols=267  Identities=23%  Similarity=0.242  Sum_probs=195.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCC------ccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEP------SFG   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~------~~~   63 (290)
                      ++|++|||||++|+.+|..|++ |.+|+|+|++. +|+.+.....                      .+..      ...
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   79 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD   79 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence            3689999999999999999976 99999999976 3432211000                      0000      000


Q ss_pred             cccc------------ccccccc--ccceEEeeeeee----eecceE--EecCce--EEeccEEEEccCCCCCCCCc---
Q 022896           64 KRSV------------INHTDYL--VNGRIVASPAIN----ITENEV--LTAEGR--RVVYDYLVIATGHKDPVPKT---  118 (290)
Q Consensus        64 ~~~~------------~~~~~~~--~~~~~~~~~v~~----~~~~~v--~~~~~~--~~~~~~vi~a~G~~~~~p~~---  118 (290)
                      ....            ..+.+.+  .+++++.+.+..    ++++.+  ...++.  ++.||++|+|||+.|..|+.   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~  159 (466)
T PRK07845         80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP  159 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence            0000            0011111  146888888888    555543  344554  68999999999999865431   


Q ss_pred             hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896          119 RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  198 (290)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  198 (290)
                      ....+.++.........+++++|+|+|..|+|+|..|..  .+.+|+++++.+.+++.+++.+...+.+.++++||+++.
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~  237 (466)
T PRK07845        160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLK  237 (466)
T ss_pred             CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEc
Confidence            111122222222222346899999999999999999986  589999999999988888889999999999999999999


Q ss_pred             CceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896          199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                      ++.+++++.+++++.+.+.+|+++++|.+++++|..|+.+.+.....+++++++|++.||+++|+ +.|||||+|||++.
T Consensus       238 ~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~  316 (466)
T PRK07845        238 RSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV  316 (466)
T ss_pred             CCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC
Confidence            99999887666667777778889999999999999999886433334446778899999999998 89999999999987


Q ss_pred             ccccc
Q 022896          279 RVSAS  283 (290)
Q Consensus       279 ~~~~~  283 (290)
                      +...+
T Consensus       317 ~~l~~  321 (466)
T PRK07845        317 LPLAS  321 (466)
T ss_pred             ccchh
Confidence            64443

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=2.5e-35  Score=255.48  Aligned_cols=267  Identities=20%  Similarity=0.225  Sum_probs=195.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh------------------h----hcC---Cccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR------------------A----MVE---PSFGKR   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~------------------~----~~~---~~~~~~   65 (290)
                      .++|++|||||++|+++|..|++ |.+|+++|+++.+|+.|....                  .    .+.   +.....
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   94 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG   94 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence            46999999999999999999986 999999999877776653221                  0    000   000000


Q ss_pred             c--------ccc-----ccccc---ccceEEeeeeeeeecceE--EecCc--eEEeccEEEEccCCCCCCCCchH---HH
Q 022896           66 S--------VIN-----HTDYL---VNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVPKTRT---ER  122 (290)
Q Consensus        66 ~--------~~~-----~~~~~---~~~~~~~~~v~~~~~~~v--~~~~~--~~~~~~~vi~a~G~~~~~p~~~~---~~  122 (290)
                      .        ...     +...+   .+++++.+.+...+...+  ...++  .++.||++|+|||++|..|+..+   ..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~  174 (479)
T PRK14727         95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP  174 (479)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccc
Confidence            0        000     11111   146778888888887743  34454  36899999999999977655211   11


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      .............+++++|||+|.+|+|+|..+..  .+.+|+++.+. .++..+++++.+.+.+.+++.|++++.++.+
T Consensus       175 ~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V  251 (479)
T PRK14727        175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA  251 (479)
T ss_pred             eecchHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence            11111111122346899999999999999999986  58999999875 5666788889999999999999999999999


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +.++.+++.+.+.+.++ ++++|.+++|+|..|+..++.....+++++++|++.||+++|+ +.|+|||+|||++.+...
T Consensus       252 ~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~~~  329 (479)
T PRK14727        252 SLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQFV  329 (479)
T ss_pred             EEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcchhh
Confidence            98876666666666555 6999999999999999887544444456788899999999998 799999999999876544


Q ss_pred             c
Q 022896          283 S  283 (290)
Q Consensus       283 ~  283 (290)
                      +
T Consensus       330 ~  330 (479)
T PRK14727        330 Y  330 (479)
T ss_pred             h
Confidence            3

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.1e-35  Score=257.56  Aligned_cols=266  Identities=18%  Similarity=0.232  Sum_probs=191.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcC------CCCcccchhhhhh--------------hcC---Ccc--c-cc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDP------KEYFEITWASLRA--------------MVE---PSF--G-KR   65 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~------~~~~~~~~~~~~~--------------~~~---~~~--~-~~   65 (290)
                      .||++||||||+|++||.+|++ |.+|+|||+      ...+|+.+.....              ...   ..+  . ..
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~   83 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG   83 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence            6999999999999999999987 999999998      2334433211100              000   000  0 00


Q ss_pred             ------ccc------------cccccc--ccceEEeeeeeeee----cceEEec--CceEEeccEEEEccCCCCCC-CCc
Q 022896           66 ------SVI------------NHTDYL--VNGRIVASPAINIT----ENEVLTA--EGRRVVYDYLVIATGHKDPV-PKT  118 (290)
Q Consensus        66 ------~~~------------~~~~~~--~~~~~~~~~v~~~~----~~~v~~~--~~~~~~~~~vi~a~G~~~~~-p~~  118 (290)
                            .+.            ...+++  .+++++.+.+..++    ...+.+.  ++.+++||++|+|||+.|.. |+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~  163 (475)
T PRK06327         84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGV  163 (475)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC
Confidence                  000            000111  24577888888877    4455553  34589999999999999853 331


Q ss_pred             --hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEE
Q 022896          119 --RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  196 (290)
Q Consensus       119 --~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  196 (290)
                        ....+............+++++|+|+|..|+|+|..+..  .+.+|+++++.+.+++..++++...+.+.+++.||++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i  241 (475)
T PRK06327        164 PFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDI  241 (475)
T ss_pred             CCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEE
Confidence              111122222222222357999999999999999999886  5899999999998888888889999999999999999


Q ss_pred             EeCceEeecccCCCceeEEcCC--C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEe
Q 022896          197 KLGERVNLDSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI  272 (290)
Q Consensus       197 ~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~  272 (290)
                      +.++.|++++.+++.+.+...+  |  +++++|.+++|+|..|+.+++....+.+.++++|++.||+++|+ +.|+|||+
T Consensus       242 ~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~  320 (475)
T PRK06327        242 HLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAI  320 (475)
T ss_pred             EeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEE
Confidence            9999999998766665555433  3  46999999999999999886544444456788899999999998 79999999


Q ss_pred             ccccCcccc
Q 022896          273 GDITDIRVS  281 (290)
Q Consensus       273 Gd~~~~~~~  281 (290)
                      |||+..+..
T Consensus       321 GD~~~~~~~  329 (475)
T PRK06327        321 GDVVRGPML  329 (475)
T ss_pred             EeccCCcch
Confidence            999986543

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=4.2e-35  Score=255.14  Aligned_cols=263  Identities=22%  Similarity=0.269  Sum_probs=191.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh----------------------hhhcCCc--cccc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL----------------------RAMVEPS--FGKR   65 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~----------------------~~~~~~~--~~~~   65 (290)
                      ..+||++|||||++|++||..+++ |.+|+|||++. +|+.....                      ...+...  ....
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~  124 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP  124 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence            357999999999999999999987 99999999974 44432110                      0001000  0000


Q ss_pred             ccc------------cccccc--ccceEEeeeeeeeecceEE----------------------------ecCceEEecc
Q 022896           66 SVI------------NHTDYL--VNGRIVASPAINITENEVL----------------------------TAEGRRVVYD  103 (290)
Q Consensus        66 ~~~------------~~~~~~--~~~~~~~~~v~~~~~~~v~----------------------------~~~~~~~~~~  103 (290)
                      ...            ...+.+  .+++++.+.....++.++.                            ..++.++.||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad  204 (561)
T PTZ00058        125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK  204 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence            000            011111  1457788887777766542                            2356689999


Q ss_pred             EEEEccCCCCCCCCchHH-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHH
Q 022896          104 YLVIATGHKDPVPKTRTE-RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG  182 (290)
Q Consensus       104 ~vi~a~G~~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~  182 (290)
                      ++|+|||++|..|+..+. .......... +..+++++|+|+|..|+|+|..+..  .+.+|+++++.+.+++.+++++.
T Consensus       205 ~lVIATGS~P~~P~IpG~~~v~ts~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il~~~d~~i~  281 (561)
T PTZ00058        205 NILIAVGNKPIFPDVKGKEFTISSDDFFK-IKEAKRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLLRKFDETII  281 (561)
T ss_pred             EEEEecCCCCCCCCCCCceeEEEHHHHhh-ccCCCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecccccccCCHHHH
Confidence            999999999876652221 1111222222 2238999999999999999999986  58999999999988888899999


Q ss_pred             HHHHHHHHhCCcEEEeCceEeecccCCC-ceeEEcCCC-cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC
Q 022896          183 DKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN  260 (290)
Q Consensus       183 ~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~  260 (290)
                      +.+.+.+++.||+++.++.+++++.+++ ++.+...++ +++++|.|++|+|.+|+.+++...++... +++|+|.||++
T Consensus       282 ~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~  360 (561)
T PTZ00058        282 NELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDN  360 (561)
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcC
Confidence            9999999999999999999998876543 344444343 57999999999999999988876555433 46799999999


Q ss_pred             ccccCCCCeEEeccccCcc
Q 022896          261 LRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       261 ~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +|| ++|+|||+|||++.+
T Consensus       361 lqT-s~p~IYA~GDv~~~~  378 (561)
T PTZ00058        361 QRT-SVKHIYAVGDCCMVK  378 (561)
T ss_pred             Ccc-CCCCEEEeEeccCcc
Confidence            997 899999999999843

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.9e-35  Score=255.34  Aligned_cols=267  Identities=18%  Similarity=0.237  Sum_probs=187.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh--------------hhcCC----cccc--cccccc-
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR--------------AMVEP----SFGK--RSVINH-   70 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~--------------~~~~~----~~~~--~~~~~~-   70 (290)
                      +||++||||||+|++||.++++ |++|+|||++..+|+.+....              .....    .+.-  .....+ 
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~   82 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA   82 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence            4899999999999999999986 999999998665665431110              00000    0000  000000 


Q ss_pred             -----------------ccccc--cceEEeeeeeeeecceEE--ecCc--eEEeccEEEEccCCCCC-CCCch--HHHHH
Q 022896           71 -----------------TDYLV--NGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDP-VPKTR--TERLN  124 (290)
Q Consensus        71 -----------------~~~~~--~~~~~~~~v~~~~~~~v~--~~~~--~~~~~~~vi~a~G~~~~-~p~~~--~~~~~  124 (290)
                                       ..+++  +++++.+.....++.++.  ..++  .++.||++|+|||++|. +|+..  ...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~  162 (466)
T PRK06115         83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRII  162 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence                             01111  356677766555555443  3455  36999999999999974 44421  11111


Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       125 ~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      +..........+++++|+|+|..|+|+|..+..  .+.+|+++++.+++++.+++++...+.+.+++.||+++.++.+++
T Consensus       163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~  240 (466)
T PRK06115        163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG  240 (466)
T ss_pred             CHHHHhCCccCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence            222222222357999999999999999999886  589999999999988888888999999999999999999999998


Q ss_pred             cccCCCceeEEcC-----CCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          205 DSVSEGSDTYLTS-----TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       205 i~~~~~~~~v~~~-----~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      ++.+++++.+...     +++++++|.|++|+|..|+.+.+.....++.++++| +.+|+++|+ ++|+|||+|||++.+
T Consensus       241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~  318 (466)
T PRK06115        241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGP  318 (466)
T ss_pred             EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCc
Confidence            8765555444321     235799999999999999988654333344556666 678999997 899999999999876


Q ss_pred             cccc
Q 022896          280 VSAS  283 (290)
Q Consensus       280 ~~~~  283 (290)
                      ...+
T Consensus       319 ~la~  322 (466)
T PRK06115        319 MLAH  322 (466)
T ss_pred             ccHH
Confidence            5444

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=2.4e-35  Score=255.65  Aligned_cols=263  Identities=23%  Similarity=0.305  Sum_probs=193.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh--------------------cCC-----cccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM--------------------VEP-----SFGKRS   66 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~   66 (290)
                      .|||+|||||++|+++|++|++ |.+|+|||+ +.+|+.+......                    ...     .+....
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK   79 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence            3899999999999999999986 999999999 5566543211000                    000     000000


Q ss_pred             cccc------------cccc--ccceEEeeeeeeeecceEEe--cCc-eEEeccEEEEccCCCCCCCCch----HHHHHH
Q 022896           67 VINH------------TDYL--VNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPKTR----TERLNQ  125 (290)
Q Consensus        67 ~~~~------------~~~~--~~~~~~~~~v~~~~~~~v~~--~~~-~~~~~~~vi~a~G~~~~~p~~~----~~~~~~  125 (290)
                      ....            ..++  .+++++.+.+..+++..+..  .++ .++.||++|+|||+.|..|+..    ...+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~  159 (461)
T TIGR01350        80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT  159 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence            0000            0000  13567778887777775433  333 4799999999999998655421    111222


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      ..........+++++|+|+|..|+++|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.++++
T Consensus       160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i  237 (461)
T TIGR01350       160 STGALNLKEVPESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV  237 (461)
T ss_pred             chHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            23333323357899999999999999999986  4889999999998888888899999999999999999999999988


Q ss_pred             ccCCCceeEEcCCC--cEEeccEEEEccCCCCCch--hhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          206 SVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       206 ~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~--~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +.+++++.+.+.+|  +++++|.+++|+|..|+.+  +++..++  .++++|++.||+++|+ +.|+|||+|||+..+..
T Consensus       238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl--~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~~~  314 (461)
T TIGR01350       238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGV--ELDERGRIVVDEYMRT-NVPGIYAIGDVIGGPML  314 (461)
T ss_pred             EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCc--eECCCCcEeeCCCccc-CCCCEEEeeecCCCccc
Confidence            87766666766666  4799999999999999987  4555444  6678899999999998 79999999999976543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=1.9e-34  Score=242.91  Aligned_cols=257  Identities=27%  Similarity=0.404  Sum_probs=189.5

Q ss_pred             cEEEEcCChHHHHHHHHhc----cCCcEEEEcCCCCcccchhhhhhhcCCcc-ccccccccccccc--cceEEeeeeeee
Q 022896           15 RVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      +|+|||||++|+++|.+|+    ++++|+|||+++++.+... +........ ..+...+..++++  +++++.+.|+.+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence            5899999999999999994    2689999999987654432 111111111 1222233333332  578888999999


Q ss_pred             ecc--eEEecCceEEeccEEEEccCCCCCCCCchH--------HHHHHHHH----HHHHH---hcCCeEEEEcCchhHHH
Q 022896           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------ERLNQYQA----ENQKI---KSARSILIVGGGPTGVE  150 (290)
Q Consensus        88 ~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~--------~~~~~~~~----~~~~~---~~~~~v~iiG~g~~~~~  150 (290)
                      +++  .+.+.++.++.||+||+|||+.+..|...+        ..+.++..    .....   ...++++|+|+|..++|
T Consensus        80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E  159 (364)
T TIGR03169        80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE  159 (364)
T ss_pred             ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence            876  588888888999999999999965443111        11122221    22222   24579999999999999


Q ss_pred             HHHHHhhhC----CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccE
Q 022896          151 LAGEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC  226 (290)
Q Consensus       151 ~a~~l~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~  226 (290)
                      +|..|...+    ...+|+++ ..+.++..+++.+...+.+.+++.||+++.++.+++++.  +  .+.+.+|+++++|.
T Consensus       160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~  234 (364)
T TIGR03169       160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADA  234 (364)
T ss_pred             HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCE
Confidence            999997532    12589988 556666677788889999999999999999999987753  2  46667888999999


Q ss_pred             EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          227 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       227 vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +++|+|.+|+ .++...++  .++++|++.||+++|++++|||||+|||+..+.
T Consensus       235 vi~a~G~~p~-~~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~  285 (364)
T TIGR03169       235 ILWATGARAP-PWLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD  285 (364)
T ss_pred             EEEccCCChh-hHHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCC
Confidence            9999999986 46665555  457789999999999878999999999997653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.7e-35  Score=253.31  Aligned_cols=264  Identities=21%  Similarity=0.257  Sum_probs=188.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC---Cccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE---PSFGKR   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~---~~~~~~   65 (290)
                      ..||++||||||+|++||.+|++ |++|+|+|++ .+|+.+.....                      .+.   ......
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA   81 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            36999999999999999999986 9999999997 44544311100                      000   000000


Q ss_pred             ccc------------cccccc--ccceEEeeeeeeeecc-------e--EEecCc--eEEeccEEEEccCCCCCC-CCch
Q 022896           66 SVI------------NHTDYL--VNGRIVASPAINITEN-------E--VLTAEG--RRVVYDYLVIATGHKDPV-PKTR  119 (290)
Q Consensus        66 ~~~------------~~~~~~--~~~~~~~~~v~~~~~~-------~--v~~~~~--~~~~~~~vi~a~G~~~~~-p~~~  119 (290)
                      ...            ...+.+  .+++++.+.+..++++       .  +.+.++  .++.||++|+|||++|.. |+..
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~  161 (472)
T PRK05976         82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP  161 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence            000            000111  1468889999999876       4  444455  579999999999999853 3311


Q ss_pred             --HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEE
Q 022896          120 --TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       120 --~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  197 (290)
                        ...+.+..........+++++|+|+|+.|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~  239 (472)
T PRK05976        162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV  239 (472)
T ss_pred             CCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence              11111222222222346899999999999999999986  58999999999988888888999999999999999999


Q ss_pred             eCceEeeccc-CCCce-eEEcCCCc--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEec
Q 022896          198 LGERVNLDSV-SEGSD-TYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG  273 (290)
Q Consensus       198 ~~~~v~~i~~-~~~~~-~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~G  273 (290)
                      .++.+++++. .+++. .+.+.+|+  ++++|.+++|+|..|+.+.+....+.+.. .+|++.||+++++ +.|+|||+|
T Consensus       240 ~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiG  317 (472)
T PRK05976        240 TGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIG  317 (472)
T ss_pred             eCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEee
Confidence            9999988874 13333 33344563  69999999999999988765433333333 4689999999998 699999999


Q ss_pred             cccCccc
Q 022896          274 DITDIRV  280 (290)
Q Consensus       274 d~~~~~~  280 (290)
                      ||++.+.
T Consensus       318 D~~~~~~  324 (472)
T PRK05976        318 DVIGEPQ  324 (472)
T ss_pred             ecCCCcc
Confidence            9997654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=2.2e-34  Score=248.64  Aligned_cols=261  Identities=21%  Similarity=0.306  Sum_probs=188.4

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--ccccccccccc--ccceEE-eeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYL--VNGRIV-ASPAI   85 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~v~   85 (290)
                      ++|+|||||++|+++|..|++   +.+|+|||+++.+++....+.........  .+......+.+  .++++. ...|.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            379999999999999999975   46999999999865432222221111111  11111111112  145554 56888


Q ss_pred             eeecc--eEEecC---ceEEe--ccEEEEccCCCCCCCC---chH------HHHHHHHHHHHHH--hcCCeEEEEcCchh
Q 022896           86 NITEN--EVLTAE---GRRVV--YDYLVIATGHKDPVPK---TRT------ERLNQYQAENQKI--KSARSILIVGGGPT  147 (290)
Q Consensus        86 ~~~~~--~v~~~~---~~~~~--~~~vi~a~G~~~~~p~---~~~------~~~~~~~~~~~~~--~~~~~v~iiG~g~~  147 (290)
                      .++++  .+.+.+   +..+.  ||++|+|||++|..|.   ...      ..+.+.....+.+  ..+++++|+|+|..
T Consensus        81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~  160 (444)
T PRK09564         81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFI  160 (444)
T ss_pred             EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHH
Confidence            88765  454433   45566  9999999999975543   211      1122222222222  24689999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccE
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC  226 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~  226 (290)
                      |+|+|..+..  .+.+|+++.+.+.+++ .+++++.+.+.+.+++.|++++.++.+++++.+++...+.+. +.++++|.
T Consensus       161 g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~  237 (444)
T PRK09564        161 GLEAVEAAKH--LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADV  237 (444)
T ss_pred             HHHHHHHHHh--cCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCE
Confidence            9999999886  5889999998887765 478889999999999999999999999888654333344444 44799999


Q ss_pred             EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          227 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       227 vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +++|+|.+|+.++++..++  +++++|++.||+++|+ ++|||||+|||++.+.
T Consensus       238 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  288 (444)
T PRK09564        238 VIVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYN  288 (444)
T ss_pred             EEECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEe
Confidence            9999999999999988776  4567899999999997 7999999999998654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=4.2e-34  Score=259.54  Aligned_cols=259  Identities=18%  Similarity=0.264  Sum_probs=200.1

Q ss_pred             EEEEcCChHHHHHHHHhcc----CCcEEEEcCCCCcccchhhhhhhcCCc-cccccccccccccc--cceEEe-eeeeee
Q 022896           16 VVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVA-SPAINI   87 (290)
Q Consensus        16 vvIIGaG~aGl~~A~~L~~----g~~v~vie~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~-~~v~~~   87 (290)
                      |+|||||+||+++|.+|.+    +++|+|||+++.+++....+....... ...+......+++.  ++++.. ..|+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            6899999999999998843    679999999998765533333332211 11222223333332  456664 578888


Q ss_pred             ecc--eEEecCceEEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHh
Q 022896           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA  156 (290)
Q Consensus        88 ~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~  156 (290)
                      ++.  .+.+.++.++.||+||+|||+.|..|+   ..      ...+.+...+......+++++|||+|..|+|+|..|.
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~  160 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ  160 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence            876  578888889999999999999976543   11      1233444455555567899999999999999999999


Q ss_pred             hhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          157 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       157 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .  .+.+|+++++.+.+++ .+++.....+.+.+++.||+++.++.++++..++....+.+.+|+++++|.||+++|.+|
T Consensus       161 ~--~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       161 N--LGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             h--cCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            7  4889999999888765 477888888999999999999999999888765545667788999999999999999999


Q ss_pred             CchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          236 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       236 ~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +.+++...++..    +|.+.||+++|+ +.|+|||+|||+..+..
T Consensus       239 n~~la~~~gl~~----~ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~  279 (785)
T TIGR02374       239 NDELAVSAGIKV----NRGIIVNDSMQT-SDPDIYAVGECAEHNGR  279 (785)
T ss_pred             CcHHHHhcCCcc----CCCEEECCCccc-CCCCEEEeeecceeCCc
Confidence            999888777643    267999999998 79999999999987654

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=6.1e-34  Score=247.18  Aligned_cols=260  Identities=21%  Similarity=0.192  Sum_probs=187.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC--------Ccccchhhhh-----------------------hhcC-
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLR-----------------------AMVE-   59 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~~~~~~~~~-----------------------~~~~-   59 (290)
                      +||++||||||+|++||.+|++ |.+|+|||++.        .+|+......                       ..+. 
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~   84 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT   84 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence            5999999999999999999986 99999999732        2444321000                       0000 


Q ss_pred             -Ccccccccc-ccc-----------ccc--ccceEEeeeeeeeecceEEecC---ceEEeccEEEEccCCCCCCCC-chH
Q 022896           60 -PSFGKRSVI-NHT-----------DYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPK-TRT  120 (290)
Q Consensus        60 -~~~~~~~~~-~~~-----------~~~--~~~~~~~~~v~~~~~~~v~~~~---~~~~~~~~vi~a~G~~~~~p~-~~~  120 (290)
                       .......+. ...           ..+  .+++++.+.+...+.+++...+   +..++||++|+|||+.|..|. ...
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G  164 (499)
T PTZ00052         85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPG  164 (499)
T ss_pred             CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCC
Confidence             000000000 000           001  1356677777777776665432   357999999999999976653 111


Q ss_pred             --HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896          121 --ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  198 (290)
Q Consensus       121 --~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  198 (290)
                        ...............+++++|+|+|..|+|+|..|..  .+.+|+++.+. .+++.+++.+.+.+.+.+++.||+++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~  241 (499)
T PTZ00052        165 AKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLE  241 (499)
T ss_pred             ccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEc
Confidence              1112222233333456899999999999999999986  58999999874 566778889999999999999999999


Q ss_pred             CceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccC
Q 022896          199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  277 (290)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~  277 (290)
                      ++.+++++..++...+.+.+|+++++|.|++++|.+|+.+++....++++++++|++.++++ ++ +.|+|||+|||+.
T Consensus       242 ~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~  318 (499)
T PTZ00052        242 GVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE  318 (499)
T ss_pred             CCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC
Confidence            99998887655556677778888999999999999999988754445556788898877777 76 8999999999985

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=3.4e-34  Score=247.65  Aligned_cols=261  Identities=19%  Similarity=0.141  Sum_probs=189.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC--------Ccccchhhhh--------------hh------cCCccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLR--------------AM------VEPSFG   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~~~~~~~~~--------------~~------~~~~~~   63 (290)
                      +||++||||||+|+.+|..+++ |.+|++||+..        .+|+.+....              ..      ....+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            5899999999999999999986 99999999731        2444321100              00      000000


Q ss_pred             c------c--------c----cccccccc--ccceEEeeeeeeeecceEEec--Cc--eEEeccEEEEccCCCCCCCCch
Q 022896           64 K------R--------S----VINHTDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKDPVPKTR  119 (290)
Q Consensus        64 ~------~--------~----~~~~~~~~--~~~~~~~~~v~~~~~~~v~~~--~~--~~~~~~~vi~a~G~~~~~p~~~  119 (290)
                      .      .        .    ......++  .+++++.+...+++++++...  ++  .++.||++|+|||++|..|+..
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip  161 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP  161 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence            0      0        0    00011112  146789999999998876543  33  4799999999999998766522


Q ss_pred             H--HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEE
Q 022896          120 T--ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       120 ~--~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  197 (290)
                      +  ....+..........+++++|+|+|.+|+|+|..+..  .+.+|+++.+ +.+++.+++++.+.+.+.|+++||+++
T Consensus       162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~  238 (484)
T TIGR01438       162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK  238 (484)
T ss_pred             CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHH--hCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence            1  1111222222222356899999999999999999986  5899999997 467788899999999999999999999


Q ss_pred             eCceEeecccCCCceeEEcCCC---cEEeccEEEEccCCCCCchhhcccccccccCC-CCcEEecCCccccCCCCeEEec
Q 022896          198 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIG  273 (290)
Q Consensus       198 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~-~g~~~v~~~~~~~~~~~vfa~G  273 (290)
                      .++.+++++..++...+...++   +++++|.+++|+|..|+.+++.....++.+++ +|++.||+++|+ +.|+|||+|
T Consensus       239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G  317 (484)
T TIGR01438       239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG  317 (484)
T ss_pred             eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence            9999888876555555655444   37999999999999999987654444456665 589999999997 799999999


Q ss_pred             cccC
Q 022896          274 DITD  277 (290)
Q Consensus       274 d~~~  277 (290)
                      ||+.
T Consensus       318 Dv~~  321 (484)
T TIGR01438       318 DILE  321 (484)
T ss_pred             EecC
Confidence            9996

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=2.2e-34  Score=236.77  Aligned_cols=251  Identities=22%  Similarity=0.298  Sum_probs=175.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-cCCccc-----cccccccccccc--cceEEeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-VEPSFG-----KRSVINHTDYLV--NGRIVASPA   84 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~--~~~~~~~~v   84 (290)
                      +||+|||||++|+++|..|++ |++|+|||++.. ++.+...... ..+.+.     .+....+.+++.  +..++...|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v   79 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV   79 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence            699999999999999999975 999999999873 3332211100 001111     011111122111  345555788


Q ss_pred             eeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896           85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (290)
Q Consensus        85 ~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~  154 (290)
                      ..+++.    .+.+.++..+.||++|+|+|..|..|+....      .++...........+++++|+|+|.++++++..
T Consensus        80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~  159 (300)
T TIGR01292        80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY  159 (300)
T ss_pred             EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence            888765    3556667789999999999998764432111      111011111233467899999999999999999


Q ss_pred             HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEc-----CCCcEEeccEEE
Q 022896          155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLT-----STGDTINADCHF  228 (290)
Q Consensus       155 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~-----~~g~~~~~d~vv  228 (290)
                      +..  .+.+|+++.+.+.+.      ....+.+.+++. |++++.++.++++..++....+..     .+++++++|.++
T Consensus       160 l~~--~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi  231 (300)
T TIGR01292       160 LTR--IAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF  231 (300)
T ss_pred             HHh--hcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence            986  478999999887542      234456667777 999999999988876543223332     223579999999


Q ss_pred             EccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccC
Q 022896          229 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  277 (290)
Q Consensus       229 ~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~  277 (290)
                      +|+|++|+.+++... +  .++++|++.+|+++++ ++||||++|||++
T Consensus       232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~  276 (300)
T TIGR01292       232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRD  276 (300)
T ss_pred             EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccC
Confidence            999999998888876 3  5578899999999987 8999999999998

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-34  Score=230.50  Aligned_cols=255  Identities=23%  Similarity=0.259  Sum_probs=183.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCc-EEEEcCCCCcccchhhhhhhcCCccc-----ccccccccccc--ccceEEee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAMVEPSFG-----KRSVINHTDYL--VNGRIVAS   82 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~   82 (290)
                      ..+||+||||||+||+||.++++ +++ ++|+|+....+.+-.....--.+.+.     .+....+.+..  ...++...
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~   81 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVED   81 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEE
Confidence            36999999999999999999987 888 77777654432211111000001111     11122222222  13455667


Q ss_pred             eeeeeecc----eEEecCceEEeccEEEEccCCCCCCCC------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896           83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPK------TRTERLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (290)
Q Consensus        83 ~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~------~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a  152 (290)
                      .+..++..    .+.++++. +++++||+|||..+..|+      +.+..++.+..+.. +..+++++|+|+|+++++.|
T Consensus        82 ~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~A  159 (305)
T COG0492          82 EVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEA  159 (305)
T ss_pred             EEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHH
Confidence            77777654    56777776 999999999999855443      22233444444444 66788999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhC-CcEEEeCceEeecccCC-CceeEEcCCC--cEEeccEEE
Q 022896          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSE-GSDTYLTSTG--DTINADCHF  228 (290)
Q Consensus       153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~-~~~~v~~~~g--~~~~~d~vv  228 (290)
                      .+|.+  ...+|++++|++.+.      ..+.+.+.+++. ++++++++.++++..++ .++.+....|  +.+.+|.++
T Consensus       160 l~L~~--~a~~Vtlv~r~~~~r------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf  231 (305)
T COG0492         160 LYLSK--IAKKVTLVHRRDEFR------AEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVF  231 (305)
T ss_pred             HHHHH--hcCeEEEEecCcccC------cCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEE
Confidence            99997  478899999998873      355666677766 89999999998888766 3344443223  378999999


Q ss_pred             EccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          229 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       229 ~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +++|+.|+..++...+.   ++++|++.+|+.++| |+|+|||+||++..+.
T Consensus       232 ~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~  279 (305)
T COG0492         232 IAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNG  279 (305)
T ss_pred             EecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCcc
Confidence            99999999999888764   689999999999887 8999999999999875

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1e-33  Score=244.38  Aligned_cols=263  Identities=22%  Similarity=0.233  Sum_probs=187.5

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh--------hh--------------hhhcC----C-cccccc
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA--------SL--------------RAMVE----P-SFGKRS   66 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~--------~~--------------~~~~~----~-~~~~~~   66 (290)
                      +++||||||+|++||.+|++ |.+|+|||++...| .+.        .+              ...+.    . ......
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG-~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGG-TCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ   80 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccc-cCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence            89999999999999999986 99999999986432 211        00              00010    0 000000


Q ss_pred             cccc------------cccc--ccceEEeeeeeeeecceEEe--cCc-eEEeccEEEEccCCCCCCCC---chHHHHHHH
Q 022896           67 VINH------------TDYL--VNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPK---TRTERLNQY  126 (290)
Q Consensus        67 ~~~~------------~~~~--~~~~~~~~~v~~~~~~~v~~--~~~-~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~  126 (290)
                      ....            ..++  .+++++.+.+..++++.+..  +++ .++.||++|+|||++|..|+   .....+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~  160 (458)
T PRK06912         81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINS  160 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence            0000            0111  24678889998888885443  344 47999999999999976443   211112222


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .........+++++|+|+|+.|+|+|..+..  .+.+|+++++.+.+++..++++.+.+.+.+++.||+++.++.+++++
T Consensus       161 ~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~  238 (458)
T PRK06912        161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN  238 (458)
T ss_pred             hHHhCccccCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            2233333357899999999999999999886  58899999999988888888999999999999999999999998887


Q ss_pred             cCCCceeEEcCCC-cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          207 VSEGSDTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       207 ~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      .++..+.+...++ +++++|.+++|+|..|+.+.+.....++.++++| +.||+++|+ +.|||||+|||++.+...
T Consensus       239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~~la  313 (458)
T PRK06912        239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGIQLA  313 (458)
T ss_pred             EcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCcccH
Confidence            6555444443222 3699999999999999987654333333556666 999999998 799999999999865443

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-33  Score=249.20  Aligned_cols=204  Identities=22%  Similarity=0.278  Sum_probs=154.5

Q ss_pred             ceEEeeeeeeeecceEEe-cCceEEeccEEEEccCCCCCCCCc---hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896           77 GRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKT---RTERLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (290)
Q Consensus        77 ~~~~~~~v~~~~~~~v~~-~~~~~~~~~~vi~a~G~~~~~p~~---~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a  152 (290)
                      ++++.+....++++++.. .++.++.||++|+|||++|.+|+.   ....+............+++++|||+|..|+|+|
T Consensus       249 v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A  328 (659)
T PTZ00153        249 VQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFM  328 (659)
T ss_pred             eEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHH
Confidence            466777777777776654 356789999999999999887761   1111222233322233578999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHH-HhCCcEEEeCceEeecccCCCc--eeEEcC-------CC---
Q 022896          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGS--DTYLTS-------TG---  219 (290)
Q Consensus       153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~~~~~~~v~~i~~~~~~--~~v~~~-------~g---  219 (290)
                      ..+..  .+.+|+++++.+.+++.+++++...+.+.+ ++.||+++.++.|++++.+++.  +.+...       ++   
T Consensus       329 ~~l~~--~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~  406 (659)
T PTZ00153        329 DIYTA--LGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKK  406 (659)
T ss_pred             HHHHh--CCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccc
Confidence            99886  588999999999999889988888888875 6789999999999988765433  444321       11   


Q ss_pred             -----cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccC-----CCCeEEeccccCcccccc
Q 022896          220 -----DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG-----QKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       220 -----~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~-----~~~vfa~Gd~~~~~~~~~  283 (290)
                           +++++|.|++|+|.+|+.+.+.....++.++ +|+|.||+++|+..     +|+|||+|||++.+...+
T Consensus       407 ~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~  479 (659)
T PTZ00153        407 NMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAH  479 (659)
T ss_pred             ccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHH
Confidence                 2699999999999999998764333344554 58999999999841     699999999998765444

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=6.3e-33  Score=229.58  Aligned_cols=257  Identities=15%  Similarity=0.167  Sum_probs=172.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh---cC--Ccccccc-ccccccccc--cceEEee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM---VE--PSFGKRS-VINHTDYLV--NGRIVAS   82 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~---~~--~~~~~~~-~~~~~~~~~--~~~~~~~   82 (290)
                      ..+||+||||||+||+||.+|++ |+++++||+.. .++.+......   ..  ....... ...+.+...  ..++...
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee
Confidence            46999999999999999999975 99999999654 33322111100   00  0000000 111111111  1234444


Q ss_pred             eeeeeecc--e--EEecCceEEeccEEEEccCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896           83 PAINITEN--E--VLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (290)
Q Consensus        83 ~v~~~~~~--~--v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a  152 (290)
                      .+..++..  .  +..+ ...+.||+||+|||+.|..|+....      .++.+.........+++++|+|+|.+++|+|
T Consensus        84 ~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A  162 (321)
T PRK10262         84 HINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEA  162 (321)
T ss_pred             EEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHH
Confidence            55555543  2  3322 3468999999999999765542211      1111222223345689999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCC------CcEEecc
Q 022896          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTST------GDTINAD  225 (290)
Q Consensus       153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~------g~~~~~d  225 (290)
                      ..|..  .+.+|+++.+.+.+.  ..+.+.+.+.+.+++.||++++++.++++..++.. ..+.+.+      .+++++|
T Consensus       163 ~~l~~--~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D  238 (321)
T PRK10262        163 LYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVA  238 (321)
T ss_pred             HHHHh--hCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECC
Confidence            99986  488999999987652  33457778888899999999999999888765533 2233222      1379999


Q ss_pred             EEEEccCCCCCchhhcccccccccCCCCcEEecC-----CccccCCCCeEEeccccCcc
Q 022896          226 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       226 ~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-----~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      .|++++|..|+..++.. ++.  + ++|++.+|+     ++++ ++|+|||+|||++.+
T Consensus       239 ~vv~a~G~~p~~~l~~~-~l~--~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~  292 (321)
T PRK10262        239 GLFVAIGHSPNTAIFEG-QLE--L-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI  292 (321)
T ss_pred             EEEEEeCCccChhHhhc-ccc--c-cCCEEEECCCCccccccc-CCCCEEECeeccCCC
Confidence            99999999999887764 343  3 468999998     5566 899999999999754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=1.1e-32  Score=240.52  Aligned_cols=256  Identities=21%  Similarity=0.273  Sum_probs=176.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh---hcCC--ccccccccccccccc--cceEE-e
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA---MVEP--SFGKRSVINHTDYLV--NGRIV-A   81 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~--~~~~~-~   81 (290)
                      ...+||+||||||+|++||.+|++ |++|+||++.  +|+.+.....   ....  ....+....+.+++.  ++++. .
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~  287 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN  287 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence            346999999999999999999987 9999999753  4443321100   0000  000111111111111  34443 3


Q ss_pred             eeeeeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHH-H-----HHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 022896           82 SPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-R-----LNQYQAENQKIKSARSILIVGGGPTGVEL  151 (290)
Q Consensus        82 ~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~-~-----~~~~~~~~~~~~~~~~v~iiG~g~~~~~~  151 (290)
                      ..|..++..    .+.+.++..+.||++++|+|+.|..|+.... .     +............+++++|+|+|++|+|+
T Consensus       288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~  367 (515)
T TIGR03140       288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA  367 (515)
T ss_pred             CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHH
Confidence            566666543    3566677789999999999998654442111 0     00011111233468999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEcC---CC--cEEec
Q 022896          152 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TG--DTINA  224 (290)
Q Consensus       152 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~~---~g--~~~~~  224 (290)
                      |..|..  .+.+|+++++.+.+.      ....+.+.+++ .||+++.++.++++..+++.. .+.+.   +|  +++++
T Consensus       368 A~~L~~--~g~~Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~  439 (515)
T TIGR03140       368 AIDLAG--IVRHVTVLEFADELK------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL  439 (515)
T ss_pred             HHHHHh--cCcEEEEEEeCCcCC------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence            999985  478999999877652      23456667766 699999999998887664442 24432   22  46899


Q ss_pred             cEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          225 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       225 d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      |.+++++|..|+.++++.. +  +++++|++.||+++|| ++|+|||+|||++.+.
T Consensus       440 D~vi~a~G~~Pn~~~l~~~-~--~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~  491 (515)
T TIGR03140       440 DGVFVQIGLVPNTEWLKDA-V--ELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY  491 (515)
T ss_pred             CEEEEEeCCcCCchHHhhh-c--ccCCCCeEEECCCCCC-CCCCEEEcccccCCcc
Confidence            9999999999999998764 3  5677899999999998 7999999999998754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.1e-33  Score=216.37  Aligned_cols=271  Identities=20%  Similarity=0.235  Sum_probs=210.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hc----CCcccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MV----EPSFGK   64 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~----~~~~~~   64 (290)
                      ..+|.+|||||..|+++|++.++ |.++.|+|..-.+|+.......                      .+    ...|.+
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW   98 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW   98 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence            47999999999999999999987 9999999988544432211000                      00    001111


Q ss_pred             cccc--------ccccccc------cceEEeeeeeeeecce--EEecCce--EEeccEEEEccCCCCCCCCch-HHHHHH
Q 022896           65 RSVI--------NHTDYLV------NGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVPKTR-TERLNQ  125 (290)
Q Consensus        65 ~~~~--------~~~~~~~------~~~~~~~~v~~~~~~~--v~~~~~~--~~~~~~vi~a~G~~~~~p~~~-~~~~~~  125 (290)
                      ....        ++...++      .+.++.+....+++..  +...++.  .++++++++|+|.+|.+|... .+.-.+
T Consensus        99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gid  178 (478)
T KOG0405|consen   99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGID  178 (478)
T ss_pred             HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccc
Confidence            1111        1111111      3477889999998884  5555663  378999999999996655422 222234


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+.+++....++|++|+|+|+.+.|+|..+..  .+.+++++.|.+.+++.|++.+...+.+.++..||+++.++.++.+
T Consensus       179 SDgff~Lee~Pkr~vvvGaGYIavE~Agi~~g--LgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v  256 (478)
T KOG0405|consen  179 SDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAG--LGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKV  256 (478)
T ss_pred             cccccchhhcCceEEEEccceEEEEhhhHHhh--cCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceee
Confidence            45556666779999999999999999999985  6999999999999999999999999999999999999999999988


Q ss_pred             ccCCCc-eeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccccC
Q 022896          206 SVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  284 (290)
Q Consensus       206 ~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~~  284 (290)
                      ....++ ..+....|+...+|.+++|+|..|+..-|..+..++.++.+|.|.+|++.+| |.|+||++||+++--+....
T Consensus       257 ~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~LTPV  335 (478)
T KOG0405|consen  257 IKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKINLTPV  335 (478)
T ss_pred             eecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEecchH
Confidence            776665 6666677766679999999999999999988888999999999999999998 89999999999997665543


Q ss_pred             C
Q 022896          285 I  285 (290)
Q Consensus       285 ~  285 (290)
                      +
T Consensus       336 A  336 (478)
T KOG0405|consen  336 A  336 (478)
T ss_pred             H
Confidence            3

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.3e-32  Score=217.88  Aligned_cols=271  Identities=18%  Similarity=0.260  Sum_probs=212.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-----c---------CC-cccc------c---c
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-----V---------EP-SFGK------R---S   66 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-----~---------~~-~~~~------~---~   66 (290)
                      .++|++|||+||.|..||...++ |++..++|++..+|+..-.....     +         .. ++..      .   .
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d  117 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD  117 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence            57999999999999999999976 99999999999877543211110     0         00 0000      0   0


Q ss_pred             ccc---------------cccccc--cceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCC-CCCCC--chHHH
Q 022896           67 VIN---------------HTDYLV--NGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHK-DPVPK--TRTER  122 (290)
Q Consensus        67 ~~~---------------~~~~~~--~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~-~~~p~--~~~~~  122 (290)
                      +..               +...++  ++.++.+....++|.++..  .++  ..+.++++++|||+. +.+|+  -+...
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk  197 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK  197 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence            000               001111  3466788888888886544  344  478999999999996 77888  34455


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      +.+....+....-+++++|+|+|..|+|+...+..  .+.+||+++-.+.+.+.++.++.+.+.+.|+..|++|+.++++
T Consensus       198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~r--LGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv  275 (506)
T KOG1335|consen  198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSR--LGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV  275 (506)
T ss_pred             EEecCCccchhhCcceEEEEcCceeeeehhhHHHh--cCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence            55555566666679999999999999999998874  7999999999999999999999999999999999999999999


Q ss_pred             eecccCCC-ceeEEc---CCC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896          203 NLDSVSEG-SDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  276 (290)
Q Consensus       203 ~~i~~~~~-~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~  276 (290)
                      .....+.+ .+.++.   .++  ++++||.+++++|.+|...-|..+.++++.|+.|++++|..+++ .+|+||++||++
T Consensus       276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~  354 (506)
T KOG1335|consen  276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT  354 (506)
T ss_pred             EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence            99988777 444433   222  47999999999999999888887778888899999999999998 799999999999


Q ss_pred             CccccccCC
Q 022896          277 DIRVSASMI  285 (290)
Q Consensus       277 ~~~~~~~~~  285 (290)
                      ..|..+|.+
T Consensus       355 ~gpMLAhkA  363 (506)
T KOG1335|consen  355 LGPMLAHKA  363 (506)
T ss_pred             Ccchhhhhh
Confidence            999887754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=2.5e-32  Score=238.66  Aligned_cols=255  Identities=21%  Similarity=0.250  Sum_probs=176.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccc----cccccccccccc--cceEE-ee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFG----KRSVINHTDYLV--NGRIV-AS   82 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~--~~~~~-~~   82 (290)
                      ..+|++||||||+|++||.+|++ |++|+||++.  +|+.+.......+ ..+.    .+....+.+...  ++++. ..
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~  287 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ  287 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence            46999999999999999999976 9999999874  4544421110000 0000    011111111111  23333 45


Q ss_pred             eeeeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHH-HH-----HHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896           83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-RL-----NQYQAENQKIKSARSILIVGGGPTGVELA  152 (290)
Q Consensus        83 ~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~-~~-----~~~~~~~~~~~~~~~v~iiG~g~~~~~~a  152 (290)
                      .+..++..    .+.+.++.++.|+.+|+|+|.+|..|+.... .+     +...........+++++|+|+|++|+++|
T Consensus       288 ~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A  367 (517)
T PRK15317        288 RASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAA  367 (517)
T ss_pred             EEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHH
Confidence            67777653    4566677789999999999998655431111 10     00111122334689999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEc---CCC--cEEecc
Q 022896          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINAD  225 (290)
Q Consensus       153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d  225 (290)
                      ..|..  .+.+|+++.+.+.+.      ....+.+.+.+ .||+++.++.++++..+++.+ .+..   .+|  +++++|
T Consensus       368 ~~L~~--~~~~Vtlv~~~~~l~------~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D  439 (517)
T PRK15317        368 IDLAG--IVKHVTVLEFAPELK------ADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELE  439 (517)
T ss_pred             HHHHh--cCCEEEEEEECcccc------ccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcC
Confidence            99986  588999999887652      22345556665 699999999999888764442 2332   233  369999


Q ss_pred             EEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          226 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       226 ~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .+++++|..|+.++++..   +.++++|++.+|+++|+ ++|+|||+|||++.+.
T Consensus       440 ~v~~~~G~~p~~~~l~~~---v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~~  490 (517)
T PRK15317        440 GVFVQIGLVPNTEWLKGT---VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVPY  490 (517)
T ss_pred             EEEEeECCccCchHHhhh---eeeCCCCcEEECcCCCC-CCCCEEECccccCCCC
Confidence            999999999999998765   36678899999999997 8999999999998753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=2e-31  Score=234.28  Aligned_cols=252  Identities=17%  Similarity=0.238  Sum_probs=168.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-cCCcc---c-cccccccccccc--cceEEeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-VEPSF---G-KRSVINHTDYLV--NGRIVASPA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~~--~~~~~~~~v   84 (290)
                      .|||+|||||||||+||.+|++ |++|+|||++. +++.+...... ..+..   . ......+.+...  ++++..+.|
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V   82 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEV   82 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEE
Confidence            5999999999999999999976 99999999975 44332211110 00000   0 111111111111  356667777


Q ss_pred             eeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896           85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (290)
Q Consensus        85 ~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~  154 (290)
                      ..++..    .+.+.++ .+.++++|+|||+.|..|+..+..      ++.+.........+++++|+|+|++|+|+|..
T Consensus        83 ~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~  161 (555)
T TIGR03143        83 LDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVF  161 (555)
T ss_pred             EEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHH
Confidence            777653    2444444 688999999999997655522211      11111112233468999999999999999999


Q ss_pred             HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE---EcCCCcEE----eccE-
Q 022896          155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY---LTSTGDTI----NADC-  226 (290)
Q Consensus       155 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v---~~~~g~~~----~~d~-  226 (290)
                      +..  .+.+|+++.+.+.+..  ....   ..+.++..||+++.++.|+++..++....+   ...+|+..    ++|. 
T Consensus       162 L~~--~g~~Vtli~~~~~~~~--~~~~---~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~  234 (555)
T TIGR03143       162 LTR--YASKVTVIVREPDFTC--AKLI---AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAG  234 (555)
T ss_pred             HHc--cCCEEEEEEeCCcccc--CHHH---HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEecccccc
Confidence            885  5899999999876521  1122   222334569999999999888754332222   23456533    3666 


Q ss_pred             ---EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccC
Q 022896          227 ---HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  277 (290)
Q Consensus       227 ---vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~  277 (290)
                         |++++|..|+..+++. .+  .++++|++.||+++++ ++|+|||+|||+.
T Consensus       235 ~~~Vi~a~G~~Pn~~l~~~-~l--~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~  284 (555)
T TIGR03143       235 TFGVFVFVGYAPSSELFKG-VV--ELDKRGYIPTNEDMET-NVPGVYAAGDLRP  284 (555)
T ss_pred             ceEEEEEeCCCCChhHHhh-hc--ccCCCCeEEeCCcccc-CCCCEEEceeccC
Confidence               9999999999988765 33  5678899999999998 7999999999975

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.98  E-value=1.5e-30  Score=212.75  Aligned_cols=264  Identities=22%  Similarity=0.355  Sum_probs=208.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cce-EEeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGR-IVASPAI   85 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~   85 (290)
                      ....++|||+|++|..|+.+++.   -.+++++-++..+.+....+........ .....+..+|++  .++ +..+.|+
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~-~~~a~r~~e~Yke~gIe~~~~t~v~  151 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVG-EGLAKRTPEFYKEKGIELILGTSVV  151 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeecc-ccccccChhhHhhcCceEEEcceeE
Confidence            35789999999999999999975   4688888887776655533332221111 111122223333  233 3577888


Q ss_pred             eeecc--eEEecCceEEeccEEEEccCCC---CCCCC------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896           86 NITEN--EVLTAEGRRVVYDYLVIATGHK---DPVPK------TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (290)
Q Consensus        86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~---~~~p~------~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~  154 (290)
                      .+|..  ++.+.+|..+.|++++||||+.   +.+|+      ...+.+.+............+++++|+|..++|++..
T Consensus       152 ~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~  231 (478)
T KOG1336|consen  152 KADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAA  231 (478)
T ss_pred             EeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHH
Confidence            88765  6999999999999999999996   45555      3344555555566666678899999999999999999


Q ss_pred             HhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEcc
Q 022896          155 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCT  231 (290)
Q Consensus       155 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~  231 (290)
                      |..  .+.+|+++++.+..++ .+.+.+.+.+++.++++|++++.++.+.+++..+++  ..+.+.+|.++++|.+++.+
T Consensus       232 l~~--~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~Gi  309 (478)
T KOG1336|consen  232 LVS--KAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGI  309 (478)
T ss_pred             HHh--cCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEee
Confidence            997  4899999999988877 467789999999999999999999999998877644  67788999999999999999


Q ss_pred             CCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          232 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       232 G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      |.+|+.++++. +.  .+++.|++.||.++|+ +.|||||+||+++.|...
T Consensus       310 G~~p~t~~~~~-g~--~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~  356 (478)
T KOG1336|consen  310 GIKPNTSFLEK-GI--LLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKG  356 (478)
T ss_pred             ccccccccccc-cc--eecccCCEeehhceee-ccCCcccccceeeccccc
Confidence            99999999987 33  4578999999999999 699999999999988643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.97  E-value=3.8e-31  Score=227.23  Aligned_cols=254  Identities=20%  Similarity=0.160  Sum_probs=167.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAIN   86 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~   86 (290)
                      ...+||+|||||++||++|.+|++ |++|+|||+.+.+++.+..   .+. .....+......+.+.  ++++..+... 
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~---gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v-  206 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY---GIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV-  206 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee---cCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc-
Confidence            346899999999999999999976 9999999998876644321   010 0111111111111111  3344433322 


Q ss_pred             eecceEEecCceEEeccEEEEccCC-CCC---CCCchHHHHHHHHHHHH---------------HHhcCCeEEEEcCchh
Q 022896           87 ITENEVLTAEGRRVVYDYLVIATGH-KDP---VPKTRTERLNQYQAENQ---------------KIKSARSILIVGGGPT  147 (290)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~vi~a~G~-~~~---~p~~~~~~~~~~~~~~~---------------~~~~~~~v~iiG~g~~  147 (290)
                        ...+.+.+. ...||+|++|||+ .|.   +|+.....+......+.               ....+++++|||+|++
T Consensus       207 --~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  283 (449)
T TIGR01316       207 --GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNT  283 (449)
T ss_pred             --CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHH
Confidence              112333332 3469999999998 454   44432211111111110               1235789999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-e-eEEcC--------
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLTS--------  217 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~-~v~~~--------  217 (290)
                      |+|+|..+..  .+.+|+++.+.+...  +  .......+.+++.||++++++.+.++..++++ + .+.+.        
T Consensus       284 a~d~A~~l~~--~G~~Vtlv~~~~~~~--~--~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~  357 (449)
T TIGR01316       284 AVDSARTALR--LGAEVHCLYRRTRED--M--TARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQI  357 (449)
T ss_pred             HHHHHHHHHH--cCCEEEEEeecCccc--C--CCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcC
Confidence            9999999886  488899999875421  1  11223345678899999999999887654332 2 22221        


Q ss_pred             -CC-----------cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          218 -TG-----------DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       218 -~g-----------~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                       +|           .++++|.||+|+|..|+..+++..++  +++++|++.||++++| +.|+|||+|||+..+.
T Consensus       358 ~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~~  429 (449)
T TIGR01316       358 DSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGAA  429 (449)
T ss_pred             CCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCcH
Confidence             22           26999999999999999888877665  5678899999999998 7999999999997664

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12831 putative oxidoreductase; Provisional

Probab=99.97  E-value=8.6e-31  Score=225.39  Aligned_cols=258  Identities=19%  Similarity=0.177  Sum_probs=165.6

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccc-cccccccccc--cceEEeeeee
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKR-SVINHTDYLV--NGRIVASPAI   85 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~v~   85 (290)
                      ....+||+||||||+||++|++|++ |++|+|||+.+.+|+.+..-..  ....+.+ ......+++.  ++++..+...
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip--~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v  214 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIP--EFRLPKETVVKKEIENIKKLGVKIETNVVV  214 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCC--CccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence            3457999999999999999999986 9999999998877654421000  0011111 1111111221  2333322211


Q ss_pred             eeecceEEecCc-eEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHHH--------------HHhcCCeEEEEcCch
Q 022896           86 NITENEVLTAEG-RRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAENQ--------------KIKSARSILIVGGGP  146 (290)
Q Consensus        86 ~~~~~~v~~~~~-~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~~--------------~~~~~~~v~iiG~g~  146 (290)
                        . ..+..++. ..+.||+|++|||+. |.   +|+.....+.....++.              ....+++++|||+|+
T Consensus       215 --~-~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  291 (464)
T PRK12831        215 --G-KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN  291 (464)
T ss_pred             --C-CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH
Confidence              1 12233332 235699999999984 54   45432222211111111              124679999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-e-eEEc--------
Q 022896          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLT--------  216 (290)
Q Consensus       147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~-~v~~--------  216 (290)
                      +|+|+|..+..  .+.+|+++.+....  .+... ...+ +.+++.||++++++.+.++..++++ + .+.+        
T Consensus       292 va~d~A~~l~r--~Ga~Vtlv~r~~~~--~m~a~-~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  365 (464)
T PRK12831        292 VAMDAARTALR--LGAEVHIVYRRSEE--ELPAR-VEEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEP  365 (464)
T ss_pred             HHHHHHHHHHH--cCCEEEEEeecCcc--cCCCC-HHHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCc
Confidence            99999999886  47889999986531  12111 1222 3467789999999998887654332 1 1211        


Q ss_pred             -C---------CCc--EEeccEEEEccCCCCCchhhcc-cccccccCCCCcEEecCC-ccccCCCCeEEeccccCcccc
Q 022896          217 -S---------TGD--TINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       217 -~---------~g~--~~~~d~vv~a~G~~~~~~~l~~-~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                       .         +|+  ++++|.||+|+|..|+..++.. .++  .++++|++.+|++ ++| +.|+|||+|||+..+..
T Consensus       366 d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~~  441 (464)
T PRK12831        366 DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL--KINKRGCIVADEETGLT-SKEGVFAGGDAVTGAAT  441 (464)
T ss_pred             CCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCc--eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCchH
Confidence             1         232  6999999999999998877765 455  5577899999998 777 89999999999986643

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.97  E-value=1.7e-30  Score=234.85  Aligned_cols=254  Identities=22%  Similarity=0.287  Sum_probs=166.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ...++|+|||||||||+||++|++ |++|+|||+.+.+|+.....-  .....+.+......+++.  ++++..+...  
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~I--P~~Rlp~evL~~die~l~~~GVe~~~gt~V--  612 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNII--PQFRIPAELIQHDIEFVKAHGVKFEFGCSP--  612 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeec--ccccccHHHHHHHHHHHHHcCCEEEeCcee--
Confidence            456899999999999999999986 999999999988775543210  000111111111111111  2333332211  


Q ss_pred             ecceEEecCceEEeccEEEEccCCCC----CCCCch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhh
Q 022896           88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAV  157 (290)
Q Consensus        88 ~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~  157 (290)
                         .+..++.....||+||+|||+.+    .+|+..      ...+..+.........+++|+|||+|++|+|+|..+..
T Consensus       613 ---di~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~R  689 (1019)
T PRK09853        613 ---DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR  689 (1019)
T ss_pred             ---EEEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHh
Confidence               12333444567999999999983    233321      11111111112223468999999999999999988765


Q ss_pred             hCCC-CeEEEEecCcc-ccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-----------------eEEcCC
Q 022896          158 DFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-----------------TYLTST  218 (290)
Q Consensus       158 ~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-----------------~v~~~~  218 (290)
                      . .+ .+|+++.+++. .++    ...+.+.+.+ +.||+++..+.+.++..+ +.+                 .+...+
T Consensus       690 l-gGakeVTLVyRr~~~~MP----A~~eEle~Al-eeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr~~~v~tg~  762 (1019)
T PRK09853        690 V-PGVEKVTVVYRRTKQEMP----AWREEYEEAL-EDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGRRRPVETGE  762 (1019)
T ss_pred             c-CCCceEEEEEccCccccc----ccHHHHHHHH-HcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCceEEeeCCC
Confidence            3 33 58999998753 222    2233344433 579999998888777532 221                 122334


Q ss_pred             CcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          219 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       219 g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +.++++|.||+|+|..|+.+++...++  +++++|++.||+++++ +.|+|||+|||+..+..
T Consensus       763 ~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~t  822 (1019)
T PRK09853        763 TVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPST  822 (1019)
T ss_pred             eEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCchH
Confidence            457999999999999999999877665  4578899999999998 79999999999976643

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.97  E-value=2.4e-29  Score=228.47  Aligned_cols=252  Identities=22%  Similarity=0.270  Sum_probs=161.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT   88 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~   88 (290)
                      ..+||+|||||||||+||++|++ |++|+|||+++.+|+.....-.  ....+.+......+++.  ++++..+.    +
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP--~~rlp~e~l~~~ie~l~~~GVe~~~g~----~  609 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIP--EFRISAESIQKDIELVKFHGVEFKYGC----S  609 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeeccc--ccCCCHHHHHHHHHHHHhcCcEEEEec----c
Confidence            46899999999999999999986 9999999999887755422100  00111111111111111  23333221    1


Q ss_pred             cceEEecCceEEeccEEEEccCCCCC----CCCchH---HHHHHHHHHH---HHHhcCCeEEEEcCchhHHHHHHHHhhh
Q 022896           89 ENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRT---ERLNQYQAEN---QKIKSARSILIVGGGPTGVELAGEIAVD  158 (290)
Q Consensus        89 ~~~v~~~~~~~~~~~~vi~a~G~~~~----~p~~~~---~~~~~~~~~~---~~~~~~~~v~iiG~g~~~~~~a~~l~~~  158 (290)
                      . .+...+.....||+|++|||+.+.    +|+...   ..++......   .....+++|+|||+|++|+|+|..+...
T Consensus       610 ~-d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl  688 (1012)
T TIGR03315       610 P-DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRV  688 (1012)
T ss_pred             c-ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHh
Confidence            1 122333345569999999999832    333211   1111111111   1234689999999999999999987653


Q ss_pred             CCC-CeEEEEecCcc-ccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE---------------EcCCCc-
Q 022896          159 FPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY---------------LTSTGD-  220 (290)
Q Consensus       159 ~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v---------------~~~~g~-  220 (290)
                       .+ .+|+++.+... .++    .....+.+.+ +.||+++....+.++.  ++.+.+               ...+|+ 
T Consensus       689 -~Ga~kVtLVyRr~~~~Mp----a~~eEl~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee  760 (1012)
T TIGR03315       689 -PGVEKVTVVYRRTKRYMP----ASREELEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGET  760 (1012)
T ss_pred             -CCCceEEEEEccCccccc----cCHHHHHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCe
Confidence             34 58999998753 222    2223343333 5799999988776665  222211               112343 


Q ss_pred             -EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCcccc
Q 022896          221 -TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       221 -~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                       ++++|.||+|+|..|+..+++..++  +++.+|++.+|++ +++ +.|+|||+|||+..+..
T Consensus       761 ~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~t  820 (1012)
T TIGR03315       761 VDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPAT  820 (1012)
T ss_pred             EEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCccH
Confidence             6899999999999999999877655  5678899999986 676 79999999999976653

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.97  E-value=3.7e-29  Score=229.19  Aligned_cols=256  Identities=14%  Similarity=0.181  Sum_probs=165.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAIN   86 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~   86 (290)
                      ...++|+|||||||||+||++|++ |++|+|||+.+.+|+...   ..+. ...+.+......+.+.  ++++.......
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~---yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG  380 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR---YGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG  380 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE---ccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence            347999999999999999999986 999999999988775432   1111 1111111111111111  33333322211


Q ss_pred             eecceEEecCceEEeccEEEEccCCC-C---CCCCchHHHHHHHHHHHHH----------------HhcCCeEEEEcCch
Q 022896           87 ITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQK----------------IKSARSILIVGGGP  146 (290)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~vi~a~G~~-~---~~p~~~~~~~~~~~~~~~~----------------~~~~~~v~iiG~g~  146 (290)
                         ..+.+++.....||+|++|||+. |   .+|+.....++....++..                ...+++|+|||+|+
T Consensus       381 ---~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~  457 (944)
T PRK12779        381 ---KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGN  457 (944)
T ss_pred             ---cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCH
Confidence               13555555556899999999995 4   3565332222221111110                12579999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--e-eEEc-------
Q 022896          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--D-TYLT-------  216 (290)
Q Consensus       147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~-~v~~-------  216 (290)
                      +|+|+|..+..  .+.+|+++.+++..  .+ +.....+.+ ..+.|+++++.+.++++..++++  + .+.+       
T Consensus       458 tA~D~A~ta~R--~Ga~Vtlv~rr~~~--~m-pa~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~  531 (944)
T PRK12779        458 TAMDAARTAKR--LGGNVTIVYRRTKS--EM-PARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE  531 (944)
T ss_pred             HHHHHHHHHHH--cCCEEEEEEecCcc--cc-cccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence            99999999885  47789999887531  11 122233333 34679999999888887654321  1 1110       


Q ss_pred             --C--------CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCccc
Q 022896          217 --S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       217 --~--------~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~  280 (290)
                        .        +|  .++++|.||+|+|..|+.. +.....+++++++|.+.+|+. ++| +.|+|||+|||+.++.
T Consensus       532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~  606 (944)
T PRK12779        532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS  606 (944)
T ss_pred             ccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH
Confidence              1        23  3689999999999999754 333334456778899999974 666 7999999999998764

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.97  E-value=1.6e-29  Score=218.40  Aligned_cols=256  Identities=20%  Similarity=0.218  Sum_probs=163.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ...++|+|||||++||++|.+|++ |++|+|||+.+.+++.+...  ........+......+++.  ++++......  
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g--ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v--  213 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG--IPEFRLPKDIVDREVERLLKLGVEIRTNTEV--  213 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc--CCCccCCHHHHHHHHHHHHHcCCEEEeCCEE--
Confidence            446899999999999999999976 99999999998776443210  0000011111111112221  2334333221  


Q ss_pred             ecceEEecCceEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHHH---------HHhcCCeEEEEcCchhHHHHHHH
Q 022896           88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAENQ---------KIKSARSILIVGGGPTGVELAGE  154 (290)
Q Consensus        88 ~~~~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~~---------~~~~~~~v~iiG~g~~~~~~a~~  154 (290)
                      . ..+...+. .+.||+||+|||+. +.   +|+.....+......+.         ....+++++|+|+|.+|+|+|..
T Consensus       214 ~-~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~  291 (457)
T PRK11749        214 G-RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAART  291 (457)
T ss_pred             C-CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHH
Confidence            1 11222222 37899999999986 43   34422211111111111         12358999999999999999999


Q ss_pred             HhhhCCCC-eEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc---eeEE---------------
Q 022896          155 IAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYL---------------  215 (290)
Q Consensus       155 l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~---------------  215 (290)
                      +..  .+. +|+++.+.+...  +..  .....+.+++.||++++++.+.++..++++   +.+.               
T Consensus       292 l~~--~G~~~Vtlv~~~~~~~--~~~--~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~  365 (457)
T PRK11749        292 AKR--LGAESVTIVYRRGREE--MPA--SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRV  365 (457)
T ss_pred             HHH--cCCCeEEEeeecCccc--CCC--CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCccc
Confidence            885  354 899999865421  111  122346678899999999999888755543   3332               


Q ss_pred             --cCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-CccccCCCCeEEeccccCccc
Q 022896          216 --TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       216 --~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                        ..+++++++|.||+|+|..|+..++.. ..++.++++|++.+|+ ++++ +.|+|||+|||+..+.
T Consensus       366 ~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~~~  431 (457)
T PRK11749        366 PIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVTGAA  431 (457)
T ss_pred             CCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCCch
Confidence              112347999999999999998766542 1223567889999998 6676 7999999999997643

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.97  E-value=2.3e-29  Score=210.52  Aligned_cols=259  Identities=19%  Similarity=0.127  Sum_probs=163.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccc-ccccccc-cceEEee-eeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI-NHTDYLV-NGRIVAS-PAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~v~~~   87 (290)
                      ..++|+|||||++|+++|.+|++ |++|++||+.+.+++.+.....  ......+... ...++.. ++.+..+ .+...
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~--~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~   94 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIP--EFRIPIERVREGVKELEEAGVVFHTRTKVCCG   94 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCc--ccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence            45899999999999999999976 9999999999887644321100  0000001010 1111111 2333322 22221


Q ss_pred             ec------c-----eEEecCceEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHHH-------------H--HhcCC
Q 022896           88 TE------N-----EVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAENQ-------------K--IKSAR  137 (290)
Q Consensus        88 ~~------~-----~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~~-------------~--~~~~~  137 (290)
                      +.      +     .+.. ++..+.||+||+|||+. |.   +|+.....+........             .  ...++
T Consensus        95 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  173 (352)
T PRK12770         95 EPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGK  173 (352)
T ss_pred             cccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCC
Confidence            11      0     0111 12246899999999984 44   44422211111111100             0  11268


Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE-
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL-  215 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~-  215 (290)
                      +++|+|+|.+++++|..+..+  +.+ |+++.+.+....    .......+.++++||++++++.+.+++.+++...+. 
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~--g~~~Vtvi~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~  247 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLL--GAEKVYLAYRRTINEA----PAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVEL  247 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHc--CCCeEEEEeecchhhC----CCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEE
Confidence            999999999999999998763  554 999987654211    122344566889999999999987776543222222 


Q ss_pred             -------------------cCCCcEEeccEEEEccCCCCCchhhcc-cccccccCCCCcEEecCCccccCCCCeEEeccc
Q 022896          216 -------------------TSTGDTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  275 (290)
Q Consensus       216 -------------------~~~g~~~~~d~vv~a~G~~~~~~~l~~-~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~  275 (290)
                                         ..+++.+++|.+++++|..|+..+..+ .++  .++++|++.+|+++++ +.|+||++|||
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vyaiGD~  324 (352)
T PRK12770        248 AKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGI--ELNRKGEIVVDEKHMT-SREGVFAAGDV  324 (352)
T ss_pred             EEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCc--eecCCCcEeeCCCccc-CCCCEEEEccc
Confidence                               122347999999999999998776655 444  5677899999999997 79999999999


Q ss_pred             cCccccc
Q 022896          276 TDIRVSA  282 (290)
Q Consensus       276 ~~~~~~~  282 (290)
                      ++.+...
T Consensus       325 ~~~~~~~  331 (352)
T PRK12770        325 VTGPSKI  331 (352)
T ss_pred             ccCcchH
Confidence            9865433

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.96  E-value=2.5e-29  Score=228.55  Aligned_cols=257  Identities=19%  Similarity=0.212  Sum_probs=164.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAIN   86 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~   86 (290)
                      ...+||+|||||||||+||++|++ |++|+|||+.+.+++.+..   .+. ...+.+......+++.  ++++..+... 
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v-  504 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---GIPEFRLPKKIVDVEIENLKKLGVKFETDVIV-  504 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---cCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE-
Confidence            346899999999999999999976 9999999998776644321   111 1111111111111111  3344332221 


Q ss_pred             eecceEEecCceEEeccEEEEccCCC-CC---CCCchHHHH---HHHHHHHH-----------HHhcCCeEEEEcCchhH
Q 022896           87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERL---NQYQAENQ-----------KIKSARSILIVGGGPTG  148 (290)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~---~~~~~~~~-----------~~~~~~~v~iiG~g~~~  148 (290)
                       . ..+.+++.....||+|++|||+. |.   +|+.....+   .++.....           ....+++|+|||+|++|
T Consensus       505 -~-~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a  582 (752)
T PRK12778        505 -G-KTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA  582 (752)
T ss_pred             -C-CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence             1 12344444456799999999984 54   454221111   11111110           12357899999999999


Q ss_pred             HHHHHHHhhhCCCCe-EEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEc---------
Q 022896          149 VELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLT---------  216 (290)
Q Consensus       149 ~~~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~---------  216 (290)
                      +|+|..+..  .+.+ |+++.+.+..  .++.. ...+ +.+++.||++++++.+.++..++++  ..+.+         
T Consensus       583 ~d~A~~~~r--~Ga~~Vtlv~r~~~~--~~~~~-~~e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~  656 (752)
T PRK12778        583 MDSARTAKR--LGAERVTIVYRRSEE--EMPAR-LEEV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPD  656 (752)
T ss_pred             HHHHHHHHH--cCCCeEEEeeecCcc--cCCCC-HHHH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcC
Confidence            999998875  4665 9999987541  11111 1122 3477889999999988777654332  11221         


Q ss_pred             CC---------C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          217 ST---------G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       217 ~~---------g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      .+         |  .++++|.||+|+|..|+..++... .++.++++|++.+|++++| +.|+|||+|||+..+..
T Consensus       657 ~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~~~  730 (752)
T PRK12778        657 ASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGGAT  730 (752)
T ss_pred             CCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCcHH
Confidence            11         2  268999999999999987665442 1335678899999999887 79999999999987643

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.96  E-value=4.6e-28  Score=208.14  Aligned_cols=248  Identities=22%  Similarity=0.365  Sum_probs=179.0

Q ss_pred             HHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--cccccc-cccccc--cceE-Eeeeeeeeecc--eEEec
Q 022896           27 LVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVIN-HTDYLV--NGRI-VASPAINITEN--EVLTA   95 (290)
Q Consensus        27 ~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~--~~~~-~~~~v~~~~~~--~v~~~   95 (290)
                      +||.+|++   .++|+|||+++.+.+.+..+.........  ...... ..+++.  ++++ ..+.|+.+++.  .+.+.
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~   80 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR   80 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence            47888864   68999999999876554333332222111  111111 112211  4555 36788888855  34443


Q ss_pred             C---ceEEe--ccEEEEccCCCCCCCCch---------HHHHHHHHHHHHHH--hcCCeEEEEcCchhHHHHHHHHhhhC
Q 022896           96 E---GRRVV--YDYLVIATGHKDPVPKTR---------TERLNQYQAENQKI--KSARSILIVGGGPTGVELAGEIAVDF  159 (290)
Q Consensus        96 ~---~~~~~--~~~vi~a~G~~~~~p~~~---------~~~~~~~~~~~~~~--~~~~~v~iiG~g~~~~~~a~~l~~~~  159 (290)
                      +   +..+.  ||+||+|||++|..|+..         ...+.+.......+  ..+++++|+|+|..|+++|..+..  
T Consensus        81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~--  158 (427)
T TIGR03385        81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE--  158 (427)
T ss_pred             ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh--
Confidence            2   34677  999999999997654411         11223333333333  357899999999999999999986  


Q ss_pred             CCCeEEEEecCccc-cccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          160 PEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       160 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      .+.+|+++.+.+.+ .+.+++++...+.+.+++.||+++.++.++++..++. . +.+.+|+++++|.+++|+|.+|+.+
T Consensus       159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHH
Confidence            58899999998877 4567778888899999999999999999988865433 2 4556788999999999999999999


Q ss_pred             hhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          239 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       239 ~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +++..++  .++++|++.||+++++ +.|+|||+|||+..+..
T Consensus       237 ~l~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~  276 (427)
T TIGR03385       237 LAKDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNI  276 (427)
T ss_pred             HHHhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeec
Confidence            9887666  5578899999999998 79999999999986543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.96  E-value=3.1e-28  Score=195.94  Aligned_cols=265  Identities=32%  Similarity=0.429  Sum_probs=193.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc----ccceEEeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL----VNGRIVASPAI   85 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~   85 (290)
                      ..+++|+|+|+|.+|.+++..|.. -++|+|+++++++-+.|.......+.-.......+.....    ....++.....
T Consensus        53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~  132 (491)
T KOG2495|consen   53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT  132 (491)
T ss_pred             CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence            457899999999999999999975 8999999999998877765444433332222222222221    13466777888


Q ss_pred             eeecc--e----EEecCc----eEEeccEEEEccCCCC---CCCC-----chHHHHHHHHHHHHH---------------
Q 022896           86 NITEN--E----VLTAEG----RRVVYDYLVIATGHKD---PVPK-----TRTERLNQYQAENQK---------------  132 (290)
Q Consensus        86 ~~~~~--~----v~~~~~----~~~~~~~vi~a~G~~~---~~p~-----~~~~~~~~~~~~~~~---------------  132 (290)
                      .+|++  .    ..+.++    ..+.||++|+|+|+.+   .+|+     .....+++.......               
T Consensus       133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~  212 (491)
T KOG2495|consen  133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD  212 (491)
T ss_pred             eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence            88876  2    233344    4689999999999985   4665     122333333322111               


Q ss_pred             --HhcCCeEEEEcCchhHHHHHHHHhhh--------C----CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896          133 --IKSARSILIVGGGPTGVELAGEIAVD--------F----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  198 (290)
Q Consensus       133 --~~~~~~v~iiG~g~~~~~~a~~l~~~--------~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  198 (290)
                        .+.--+++|||||++|+|+|.+|...        +    ...+|++++..+.++..|+..+.....+.+.+.||++..
T Consensus       213 eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~  292 (491)
T KOG2495|consen  213 EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDT  292 (491)
T ss_pred             HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeec
Confidence              11234789999999999999988753        1    246899999999999999999999999999999999999


Q ss_pred             CceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCchhhcccccccccCCCC--cEEecCCccccCCCCeEEecc
Q 022896          199 GERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHG--MLMVDENLRVKGQKNIFAIGD  274 (290)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g--~~~v~~~~~~~~~~~vfa~Gd  274 (290)
                      ++.|+.  +++..+.+...+|+  +|++..+|++||..|. ++.....-+  .++.+  .+.+|+.+|..+.+||||+||
T Consensus       293 ~t~Vk~--V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~--i~e~~rr~L~vDE~LrV~G~~nvfAiGD  367 (491)
T KOG2495|consen  293 GTMVKK--VTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQ--IDEQGRRGLAVDEWLRVKGVKNVFAIGD  367 (491)
T ss_pred             ccEEEe--ecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhc--CCccCceeeeeeceeeccCcCceEEecc
Confidence            999954  44556666666774  7999999999999874 455554332  23445  899999999999999999999


Q ss_pred             ccCccc
Q 022896          275 ITDIRV  280 (290)
Q Consensus       275 ~~~~~~  280 (290)
                      |++.+.
T Consensus       368 ca~~~~  373 (491)
T KOG2495|consen  368 CADQRG  373 (491)
T ss_pred             cccccc
Confidence            995443

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.96  E-value=4.7e-28  Score=209.52  Aligned_cols=259  Identities=17%  Similarity=0.167  Sum_probs=161.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCC-ccccccccccccccc--cceEEeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAIN   86 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~v~~   86 (290)
                      ...++|+|||||++|+++|.+|++ |++|+|||+.+.+++.+..   .+.. ....+......+++.  ++++..+....
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~---gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  217 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY---GIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG  217 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee---cCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence            346899999999999999999976 9999999999887654321   1100 111111111111111  23333332221


Q ss_pred             eecceEEecCceEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHH--------H------HHhcCCeEEEEcCchhH
Q 022896           87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAEN--------Q------KIKSARSILIVGGGPTG  148 (290)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~--------~------~~~~~~~v~iiG~g~~~  148 (290)
                      .+   +.. +.....||++++|+|+. +.   +|+.....+......+        .      ....+++++|||+|++|
T Consensus       218 ~~---~~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g  293 (471)
T PRK12810        218 KD---ITA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTG  293 (471)
T ss_pred             Cc---CCH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHH
Confidence            11   111 11235799999999997 43   4553222221111110        0      12357999999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCccccccC-C----hhHHH-HHHHHHHhCCcEEEeCceEeecccCCCcee-EE-----c
Q 022896          149 VELAGEIAVDFPEKKVTLVHKGSRLLEFI-G----PKAGD-KTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL-----T  216 (290)
Q Consensus       149 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~-----~  216 (290)
                      +|+|..+... ...+|+.+...+...... .    +.+.. ...+.+++.|+++++++.++++..+++.+. +.     .
T Consensus       294 ~e~A~~~~~~-ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~  372 (471)
T PRK12810        294 MDCVGTAIRQ-GAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL  372 (471)
T ss_pred             HHHHHHHHHc-CCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence            9999877652 344788665443221111 0    01111 134567788999999999988865444422 22     2


Q ss_pred             CC-------C--cEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEec-CCccccCCCCeEEeccccCccc
Q 022896          217 ST-------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       217 ~~-------g--~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~-~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .+       |  +++++|.||+|+|..|+. .++...++  +++++|++.+| +++++ +.|+||++|||++.+.
T Consensus       373 ~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl--~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~  444 (471)
T PRK12810        373 GEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV--ELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQS  444 (471)
T ss_pred             cCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc--ccCCCCCEEeCCCcccC-CCCCEEEccccCCCch
Confidence            12       2  479999999999999874 47766554  56788999998 68887 8999999999998654

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.7e-29  Score=193.32  Aligned_cols=267  Identities=18%  Similarity=0.159  Sum_probs=188.8

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC--Ccccchhh---------------------------------
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--YFEITWAS---------------------------------   53 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~--~~~~~~~~---------------------------------   53 (290)
                      .+.+||++|||||.+||+||.+++. |.+|.++|-=.  ..|..|..                                 
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW   95 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW   95 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence            3457999999999999999999987 99999998322  12222210                                 


Q ss_pred             --hhhhcCCcc-----------cccccccccc-ccccceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCCCCC
Q 022896           54 --LRAMVEPSF-----------GKRSVINHTD-YLVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPV  115 (290)
Q Consensus        54 --~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~~~~  115 (290)
                        ....+.+++           ..-.+....+ ..+.+..++...++++++++..  .++  +.++++.+++|||.+|.+
T Consensus        96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY  175 (503)
T KOG4716|consen   96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY  175 (503)
T ss_pred             CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCC
Confidence              000011111           0000000000 0112345667777777775433  223  468999999999999877


Q ss_pred             CCchH--HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCC
Q 022896          116 PKTRT--ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK  193 (290)
Q Consensus       116 p~~~~--~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  193 (290)
                      |+..+  +.-...+.+......+.+.+|+|+++.++|+|.+|.-  .+.+++++.|+ .+++.|+.++.+.+.+.++++|
T Consensus       176 p~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~g--fg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~G  252 (503)
T KOG4716|consen  176 PDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKG--FGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERG  252 (503)
T ss_pred             CCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhh--cCCCcEEEEEE-eecccccHHHHHHHHHHHHHhC
Confidence            66222  1223344455555677889999999999999999995  78999998876 6778999999999999999999


Q ss_pred             cEEEeCceEeecccCCCc-eeEE---cCCC--cEEeccEEEEccCCCCCchhhcccccccccCC-CCcEEecCCccccCC
Q 022896          194 VDVKLGERVNLDSVSEGS-DTYL---TSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQ  266 (290)
Q Consensus       194 i~~~~~~~v~~i~~~~~~-~~v~---~~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~-~g~~~v~~~~~~~~~  266 (290)
                      ++|...+.+..++..+++ ..+.   +..+  .+-++|.|++|+|..+..+-+.....++..++ .|.|++|+.-++ +.
T Consensus       253 ikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~v  331 (503)
T KOG4716|consen  253 IKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NV  331 (503)
T ss_pred             CceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CC
Confidence            999999888888765554 3332   2222  25679999999999998887777777777755 488999998887 89


Q ss_pred             CCeEEeccccCccc
Q 022896          267 KNIFAIGDITDIRV  280 (290)
Q Consensus       267 ~~vfa~Gd~~~~~~  280 (290)
                      |.|||+||+.....
T Consensus       332 p~vyAvGDIl~~kp  345 (503)
T KOG4716|consen  332 PYVYAVGDILEDKP  345 (503)
T ss_pred             CceEEecceecCCc
Confidence            99999999987543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.96  E-value=2e-28  Score=218.62  Aligned_cols=255  Identities=18%  Similarity=0.187  Sum_probs=162.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT   88 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~   88 (290)
                      ..++|+||||||+||++|++|++ |++|+|||+++.+|+.+....  .....+........+.+.  ++++..+.+...+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gi--p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d  269 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGI--PRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD  269 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecC--CCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence            45899999999999999999986 999999999988775543110  000111111111111111  2333322221111


Q ss_pred             cceEEecCceEEeccEEEEccCCCC----CCCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHHhhh
Q 022896           89 ENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLNQYQAENQ------KIKSARSILIVGGGPTGVELAGEIAVD  158 (290)
Q Consensus        89 ~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~~~~~~~~------~~~~~~~v~iiG~g~~~~~~a~~l~~~  158 (290)
                         +...+. ...||.|++|||+.+    .+|+.....+......+.      ....+++++|||+|++++++|..+...
T Consensus       270 ---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~  345 (652)
T PRK12814        270 ---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRL  345 (652)
T ss_pred             ---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHc
Confidence               112121 235999999999973    345432222211111111      234689999999999999999988752


Q ss_pred             CCCCeEEEEecCcc-ccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE---c---------------CCC
Q 022896          159 FPEKKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---T---------------STG  219 (290)
Q Consensus       159 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~---~---------------~~g  219 (290)
                       ...+|+++.+... .++..    ...+.+ +.+.||++++++.+.++..+++...+.   .               .+|
T Consensus       346 -Ga~~Vtlv~r~~~~~mpa~----~~ei~~-a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g  419 (652)
T PRK12814        346 -GAESVTILYRRTREEMPAN----RAEIEE-ALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEG  419 (652)
T ss_pred             -CCCeEEEeeecCcccCCCC----HHHHHH-HHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCC
Confidence             3357999998754 22222    223333 345799999999887776554442221   1               123


Q ss_pred             c--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCcccc
Q 022896          220 D--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       220 ~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +  ++++|.||+++|..|+..++...++  .++.+|++.+|++ +++ +.|+|||+||++..+..
T Consensus       420 ~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~~~  481 (652)
T PRK12814        420 SEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGADI  481 (652)
T ss_pred             ceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCchH
Confidence            2  6899999999999999888877665  5577899999985 555 89999999999987654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.96  E-value=9.4e-28  Score=221.86  Aligned_cols=256  Identities=16%  Similarity=0.135  Sum_probs=160.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCC-ccccccccccccccc--cceEEeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ..++|+|||||||||+||++|++ |++|+|||+.+..|+....   .+.. ..+.+......+++.  ++++..+.+...
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~---gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~  505 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY---GIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK  505 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec---cCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence            46899999999999999999976 9999999999877643221   1110 111111111111111  344443332211


Q ss_pred             ecceEEecCce-EEeccEEEEccCCC-C---CCCCchHHHHHHHHHHHH---------------HHhcCCeEEEEcCchh
Q 022896           88 TENEVLTAEGR-RVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQ---------------KIKSARSILIVGGGPT  147 (290)
Q Consensus        88 ~~~~v~~~~~~-~~~~~~vi~a~G~~-~---~~p~~~~~~~~~~~~~~~---------------~~~~~~~v~iiG~g~~  147 (290)
                         .+...+.. ...||+||+|||+. |   .+|+.....+.....++.               ....+++|+|||+|++
T Consensus       506 ---~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t  582 (1006)
T PRK12775        506 ---TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT  582 (1006)
T ss_pred             ---ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence               12222211 24699999999995 4   455533222222222111               1235799999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEc---------
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLT---------  216 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~---------  216 (290)
                      |+++|..+... ....|+++.+.....  .. ..... .+.+++.||++++++.+.++..++++  ..+.+         
T Consensus       583 A~D~A~~a~rl-Ga~~Vtiv~rr~~~e--m~-a~~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d  657 (1006)
T PRK12775        583 AMDCLRVAKRL-GAPTVRCVYRRSEAE--AP-ARIEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPD  657 (1006)
T ss_pred             HHHHHHHHHHc-CCCEEEEEeecCccc--CC-CCHHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccC
Confidence            99999887752 234688887654321  11 11111 24577889999999998887654332  11211         


Q ss_pred             C--------CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-----CccccCCCCeEEeccccCccc
Q 022896          217 S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       217 ~--------~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-----~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .        +|  .++++|.|++|+|..|+..++... .++.++.+|.+.+|+     +++| ++|+|||+||++.++.
T Consensus       658 ~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~~  734 (1006)
T PRK12775        658 EKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGGA  734 (1006)
T ss_pred             CCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCcc
Confidence            1        22  268999999999999987765542 123567889999997     5676 8999999999998764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.95  E-value=2.6e-27  Score=202.65  Aligned_cols=261  Identities=22%  Similarity=0.296  Sum_probs=210.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc----CCcEEEEcCCCCcccchhhhhhhcCCcc-cccccccccccccc--ceE-Eeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYLVN--GRI-VASPA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~----g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~-~~~~v   84 (290)
                      +.+++|||.|++|..+..++.+    -+++++|-..++..+.-..++..+.+.. .++....-.+|+..  +.+ ...++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            4789999999999999988843    5899999999888777666666655532 23333444455543  333 46788


Q ss_pred             eeeecc--eEEecCceEEeccEEEEccCCCCCCCC---------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 022896           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---------TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (290)
Q Consensus        85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---------~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~  153 (290)
                      +.+++.  .|.++.|..+.||.+++|||+.|++|+         ...+.+.+...+...-+..++.+|||+|.-|+|+|.
T Consensus        83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~  162 (793)
T COG1251          83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAAR  162 (793)
T ss_pred             EEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHH
Confidence            999876  588889999999999999999976554         223455556666665556778899999999999999


Q ss_pred             HHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccC
Q 022896          154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG  232 (290)
Q Consensus       154 ~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G  232 (290)
                      .|.+  .+.++++++-.+.++. .+++.....++..+++.|++++.+...+++...+....+.+++|..+++|.||+|.|
T Consensus       163 ~L~~--~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G  240 (793)
T COG1251         163 GLKD--LGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG  240 (793)
T ss_pred             HHHh--CCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence            9997  5889999988877655 477788888999999999999999998888776666889999999999999999999


Q ss_pred             CCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          233 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       233 ~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .+|+..+....++.+  +.  .|.||.++|| +.|+|||+|.|+....
T Consensus       241 IrPn~ela~~aGlav--nr--GIvvnd~mqT-sdpdIYAvGEcae~~g  283 (793)
T COG1251         241 IRPNDELAKEAGLAV--NR--GIVVNDYMQT-SDPDIYAVGECAEHRG  283 (793)
T ss_pred             cccccHhHHhcCcCc--CC--Ceeecccccc-cCCCeeehhhHHHhcC
Confidence            999999999999854  33  7999999999 8999999999987643

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4e-27  Score=173.82  Aligned_cols=256  Identities=18%  Similarity=0.231  Sum_probs=177.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc----ccchhhhhhh-cCCccccc-----ccccccccc--ccceE
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF----EITWASLRAM-VEPSFGKR-----SVINHTDYL--VNGRI   79 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~----~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~--~~~~~   79 (290)
                      +.+|+|||+||++.+||.|+++ .++.++||---.-    |+....-... --+.|++-     ....+++.-  -+.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            4689999999999999999987 8999999964321    2221111100 01222211     111111110  03466


Q ss_pred             Eeeeeeeeecc----eEEecCceEEeccEEEEccCCC---CCCCCc-hH----HHHHHHHHHHH--HHhcCCeEEEEcCc
Q 022896           80 VASPAINITEN----EVLTAEGRRVVYDYLVIATGHK---DPVPKT-RT----ERLNQYQAENQ--KIKSARSILIVGGG  145 (290)
Q Consensus        80 ~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~---~~~p~~-~~----~~~~~~~~~~~--~~~~~~~v~iiG~g  145 (290)
                      +...|..++.+    .+++ +.+...+|.+|+|||..   ..+|+. +.    +.+..+.-+..  .+...|...|||+|
T Consensus        88 ~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGG  166 (322)
T KOG0404|consen   88 ITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGG  166 (322)
T ss_pred             eeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCc
Confidence            77788887765    3444 55678999999999987   356763 21    22333332222  34678999999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCc---eeEE-cCCC-
Q 022896          146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS---DTYL-TSTG-  219 (290)
Q Consensus       146 ~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~---~~v~-~~~g-  219 (290)
                      .+++|-|.+|..+  +.+|++++|++.+      +..+.+.+..++ .+|++++++.+.+...+.+.   ..+. ...| 
T Consensus       167 DsA~EEA~fLtky--askVyii~Rrd~f------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge  238 (322)
T KOG0404|consen  167 DSAMEEALFLTKY--ASKVYIIHRRDHF------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGE  238 (322)
T ss_pred             HHHHHHHHHHHhh--ccEEEEEEEhhhh------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCc
Confidence            9999999999985  8999999999987      677777766655 48999999988555544332   3332 2333 


Q ss_pred             -cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          220 -DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       220 -~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                       ..++.+-+++++|..|+..+++.   .++++++|++.+-+.---+++|++||+||+.+..-
T Consensus       239 ~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ky  297 (322)
T KOG0404|consen  239 ETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKY  297 (322)
T ss_pred             ccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCcccccccceeeccccchHHH
Confidence             47899999999999999999988   33789999999987544448999999999987543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.95  E-value=1.3e-26  Score=199.92  Aligned_cols=254  Identities=16%  Similarity=0.146  Sum_probs=159.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT   88 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~   88 (290)
                      ..++|+||||||+||++|.+|++ |++|+|+|+.+.+++.+..  .........+......+++.  ++++....  .+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~--~v~  215 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFKLDKAVLSRRREIFTAMGIEFHLNC--EVG  215 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCccccCCHHHHHHHHHHHHHCCCEEECCC--EeC
Confidence            46899999999999999999976 9999999999887654321  00000111111111112221  22332111  111


Q ss_pred             cceEEecCceEEeccEEEEccCCCC----CCCCchHHHHHHHHHHH--------H---------HHhcCCeEEEEcCchh
Q 022896           89 ENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLNQYQAEN--------Q---------KIKSARSILIVGGGPT  147 (290)
Q Consensus        89 ~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~~~~~~~--------~---------~~~~~~~v~iiG~g~~  147 (290)
                      . .+...+ ....||.|++|||+.+    .+|+.....+.....+.        .         ....+++++|+|+|.+
T Consensus       216 ~-~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  293 (467)
T TIGR01318       216 R-DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT  293 (467)
T ss_pred             C-ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence            1 111111 2347999999999974    34553222211111000        0         0124689999999999


Q ss_pred             HHHHHHHHhhhCCC-CeEEEEecCccc-cccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-e-eEEc-------
Q 022896          148 GVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLT-------  216 (290)
Q Consensus       148 ~~~~a~~l~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~-~v~~-------  216 (290)
                      ++++|..+..  .+ .+|+++.+.+.. ++..    .. ..+.+++.||++++++.++++..++++ + .+.+       
T Consensus       294 a~d~A~~a~~--~Ga~~Vtvv~r~~~~~~~~~----~~-e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  366 (467)
T TIGR01318       294 AMDCVRTAIR--LGAASVTCAYRRDEANMPGS----RR-EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGE  366 (467)
T ss_pred             HHHHHHHHHH--cCCCeEEEEEecCcccCCCC----HH-HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecc
Confidence            9999998775  35 579999987643 2211    11 234567889999999998888654332 2 1211       


Q ss_pred             --CC---------C--cEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEec----CCccccCCCCeEEeccccCc
Q 022896          217 --ST---------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD----ENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       217 --~~---------g--~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~----~~~~~~~~~~vfa~Gd~~~~  278 (290)
                        .+         |  .++++|.||+++|..|+. .++...++  +++++|++.+|    .++++ +.|+||++|||++.
T Consensus       367 ~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl--~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~  443 (467)
T TIGR01318       367 PDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGI--TLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRG  443 (467)
T ss_pred             cCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCc--cCCCCCCEEeCCccccCccC-CCCCEEEECCcCCC
Confidence              11         2  368999999999999974 55665554  56788999999    56776 79999999999987


Q ss_pred             ccc
Q 022896          279 RVS  281 (290)
Q Consensus       279 ~~~  281 (290)
                      +..
T Consensus       444 ~~~  446 (467)
T TIGR01318       444 ADL  446 (467)
T ss_pred             ccH
Confidence            653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.95  E-value=1.9e-26  Score=206.84  Aligned_cols=255  Identities=16%  Similarity=0.176  Sum_probs=158.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ..++|+||||||+||++|.+|++ |++|+|||+.+.+|+.+..   .+. .....+.+....+++.  ++++.....  +
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~---gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~--v  400 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF---GIPAFKLDKSLLARRREIFSAMGIEFELNCE--V  400 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee---cCCCccCCHHHHHHHHHHHHHCCeEEECCCE--e
Confidence            46899999999999999999986 9999999999887754322   111 0111111111111111  223322111  1


Q ss_pred             ecceEEecCceEEeccEEEEccCCCC----CCCCchHHHHH--------HHHHHHH-------H--HhcCCeEEEEcCch
Q 022896           88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLN--------QYQAENQ-------K--IKSARSILIVGGGP  146 (290)
Q Consensus        88 ~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~--------~~~~~~~-------~--~~~~~~v~iiG~g~  146 (290)
                      .. .+...+ ....||.|++|+|+..    .+|+.....+.        .......       .  ...+++++|||+|+
T Consensus       401 ~~-~i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  478 (654)
T PRK12769        401 GK-DISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGD  478 (654)
T ss_pred             CC-cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcH
Confidence            10 111111 1246999999999862    34442211111        0000000       0  12468999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCC-Cce-eEEc--------
Q 022896          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT--------  216 (290)
Q Consensus       147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~-~~~-~v~~--------  216 (290)
                      +|+++|..+... ...+|+++.+.+......    .....+.+++.||++++++.+.++..++ +.+ .+.+        
T Consensus       479 ~a~d~A~~a~r~-ga~~Vt~i~~~~~~~~~~----~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  553 (654)
T PRK12769        479 TAMDCVRTALRH-GASNVTCAYRRDEANMPG----SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEP  553 (654)
T ss_pred             HHHHHHHHHHHc-CCCeEEEeEecCCCCCCC----CHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCc
Confidence            999999877652 335799988765432111    1223455788999999999888776433 321 2221        


Q ss_pred             -CC---------Cc--EEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEecC----CccccCCCCeEEeccccCcc
Q 022896          217 -ST---------GD--TINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDE----NLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       217 -~~---------g~--~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~~----~~~~~~~~~vfa~Gd~~~~~  279 (290)
                       .+         |+  ++++|.||+|+|+.|+. .+++..++  +++.+|.+.+|.    +++| +.|+|||+||++.++
T Consensus       554 ~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g~  630 (654)
T PRK12769        554 DAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGV--TVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVRGA  630 (654)
T ss_pred             CCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCC--cCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCCCC
Confidence             11         22  69999999999999874 56666554  667889999986    3676 799999999999876


Q ss_pred             cc
Q 022896          280 VS  281 (290)
Q Consensus       280 ~~  281 (290)
                      ..
T Consensus       631 ~~  632 (654)
T PRK12769        631 DL  632 (654)
T ss_pred             cH
Confidence            54

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2e-27  Score=186.40  Aligned_cols=255  Identities=22%  Similarity=0.299  Sum_probs=176.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh---hhhhc------CCccccccccccccccccceEE-
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS---LRAMV------EPSFGKRSVINHTDYLVNGRIV-   80 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~-   80 (290)
                      ..|||+||||||+|.+||.|.+| |.+.-++-.+  +|+....   ...++      .+.+....-...++|  .+++. 
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer--fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y--~vDimn  285 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY--DVDVMN  285 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh--hCCeeccccchhheeccccccchHHHHHHHHHHhhc--Cchhhh
Confidence            46999999999999999999975 8776655321  3322211   11111      111111111111111  11111 


Q ss_pred             eeeeeeeec-------ceEEecCceEEeccEEEEccCCC---CCCCCchH---HHHHHHHHHHHHHhcCCeEEEEcCchh
Q 022896           81 ASPAINITE-------NEVLTAEGRRVVYDYLVIATGHK---DPVPKTRT---ERLNQYQAENQKIKSARSILIVGGGPT  147 (290)
Q Consensus        81 ~~~v~~~~~-------~~v~~~~~~~~~~~~vi~a~G~~---~~~p~~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~~  147 (290)
                      -.++..+.+       .++.+++|..+.++.+|+|||++   .++|+...   ...-.+.++...++.+|+|+|||||++
T Consensus       286 ~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNS  365 (520)
T COG3634         286 LQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNS  365 (520)
T ss_pred             hhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcc
Confidence            111222222       26889999999999999999999   46787322   222333445567788999999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhC-CcEEEeCceEeecccCCCc-eeEEc---CCCc--
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLT---STGD--  220 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~-~~v~~---~~g~--  220 (290)
                      |.|.|..|+-  .-.+|++++-.+.+      +..+.+.+.++.. +++++.+..-+++..+++. ..+..   .+|+  
T Consensus       366 GvEAAIDLAG--iv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~  437 (520)
T COG3634         366 GVEAAIDLAG--IVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEH  437 (520)
T ss_pred             hHHHHHhHHh--hhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCcee
Confidence            9999999984  46789988866554      5666777777664 8999999999988887554 22221   2333  


Q ss_pred             EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          221 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       221 ~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      .++-+-|++-+|..||++||+..   +++++.|-|.+|.+..| +.|+|||+|||++.|.-+
T Consensus       438 ~l~LeGvFVqIGL~PNT~WLkg~---vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~yKQ  495 (520)
T COG3634         438 HLELEGVFVQIGLLPNTEWLKGA---VELNRRGEIIVDARGET-NVPGVFAAGDCTTVPYKQ  495 (520)
T ss_pred             EEEeeeeEEEEecccChhHhhch---hhcCcCccEEEecCCCc-CCCceeecCcccCCccce
Confidence            57788899999999999999987   37789999999999998 899999999999987543

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.95  E-value=3.1e-26  Score=212.94  Aligned_cols=257  Identities=14%  Similarity=0.097  Sum_probs=165.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc---ccceEE-eeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIV-ASPAIN   86 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~v~~   86 (290)
                      ..+||+|||||||||+||.+|++ |++|+|||+++.+++.+.............+......+.+   .++.+. ...|..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~  241 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFG  241 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEE
Confidence            35899999999999999999986 9999999999888765532211111000011111111111   123333 344444


Q ss_pred             eecc-eE---E-------------e-cCceEEeccEEEEccCCCCC---CCCchHHHHHHH---HHHHH--HHhcCCeEE
Q 022896           87 ITEN-EV---L-------------T-AEGRRVVYDYLVIATGHKDP---VPKTRTERLNQY---QAENQ--KIKSARSIL  140 (290)
Q Consensus        87 ~~~~-~v---~-------------~-~~~~~~~~~~vi~a~G~~~~---~p~~~~~~~~~~---~~~~~--~~~~~~~v~  140 (290)
                      +... .+   .             . +....+.+++||+|||+.+.   +|+.....+...   .....  ....+++++
T Consensus       242 i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~Vv  321 (985)
T TIGR01372       242 YYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIV  321 (985)
T ss_pred             EecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEE
Confidence            4322 00   0             0 11126899999999999854   344322222111   11111  123579999


Q ss_pred             EEcCchhHHHHHHHHhhhCCC-CeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEc-
Q 022896          141 IVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLT-  216 (290)
Q Consensus       141 iiG~g~~~~~~a~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~-  216 (290)
                      |+|+|+.++++|..|..  .+ ..+++++..+.        +...+.+.+++.||+++.++.++++..++..  +.+.. 
T Consensus       322 ViG~G~~g~e~A~~L~~--~G~~vV~vv~~~~~--------~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~  391 (985)
T TIGR01372       322 VATNNDSAYRAAADLLA--AGIAVVAIIDARAD--------VSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARN  391 (985)
T ss_pred             EECCCHHHHHHHHHHHH--cCCceEEEEccCcc--------hhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEec
Confidence            99999999999999986  36 46788876653        2345677889999999999999888765443  33331 


Q ss_pred             -CCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          217 -STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       217 -~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                       .+++++++|.|+++.|..|+.+++...+..+.+++...-    +...++.|+||++||+++.....
T Consensus       392 ~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~----~~~~t~v~gVyaaGD~~g~~~~~  454 (985)
T TIGR01372       392 GGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAA----FLPGDAVQGCILAGAANGLFGLA  454 (985)
T ss_pred             CCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCc----eecCCCCCCeEEeeccCCccCHH
Confidence             245689999999999999999999888776555543211    11124689999999999876443

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK13984 putative oxidoreductase; Provisional

Probab=99.94  E-value=7.6e-26  Score=201.85  Aligned_cols=259  Identities=18%  Similarity=0.159  Sum_probs=156.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAIN   86 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~   86 (290)
                      ...++|+|||+|++|+++|..|++ |++|+|||+.+..++.+..   .+. .....+......+++.  ++++..+....
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~---~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  357 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY---GIPSYRLPDEALDKDIAFIEALGVKIHLNTRVG  357 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee---cCCcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence            456899999999999999999976 9999999999877654321   110 0111111111111111  22332221111


Q ss_pred             eecceEEecCceEEeccEEEEccCCC----CCCCCchHHHHHHHHHHHH----H-------HhcCCeEEEEcCchhHHHH
Q 022896           87 ITENEVLTAEGRRVVYDYLVIATGHK----DPVPKTRTERLNQYQAENQ----K-------IKSARSILIVGGGPTGVEL  151 (290)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~vi~a~G~~----~~~p~~~~~~~~~~~~~~~----~-------~~~~~~v~iiG~g~~~~~~  151 (290)
                      .+   +..++ ....||+||+|||+.    +.+|+.....+......+.    .       ...+++++|||+|.+|+|+
T Consensus       358 ~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~  433 (604)
T PRK13984        358 KD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDI  433 (604)
T ss_pred             Cc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHH
Confidence            11   11111 235799999999986    2455532221111111111    1       1236899999999999999


Q ss_pred             HHHHhhhC----CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEc--------C-
Q 022896          152 AGEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--------S-  217 (290)
Q Consensus       152 a~~l~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~--------~-  217 (290)
                      |..+....    ...+|+++..... ...++.. ...+.+ +.+.||++++++.+.++..+++.+ .+..        . 
T Consensus       434 A~~l~r~~~~~~g~~~V~v~~~~r~-~~~~~~~-~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~  510 (604)
T PRK13984        434 ARSMARLQKMEYGEVNVKVTSLERT-FEEMPAD-MEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEE  510 (604)
T ss_pred             HHHHHhccccccCceEEEEeccccC-cccCCCC-HHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCC
Confidence            99987531    1246777643211 1112212 222333 346799999998887765444331 1111        1 


Q ss_pred             ----------CCcEEeccEEEEccCCCCCchhhccc-ccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          218 ----------TGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       218 ----------~g~~~~~d~vv~a~G~~~~~~~l~~~-~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                                +++++++|.|++|+|..|+..++... +..+.+ ++|++.||++++| ++|+|||+||++..+..
T Consensus       511 G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~~  583 (604)
T PRK13984        511 GRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPDI  583 (604)
T ss_pred             CCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchHH
Confidence                      12379999999999999998887642 222233 4688999999998 79999999999988754

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.94  E-value=2.2e-25  Score=193.02  Aligned_cols=259  Identities=18%  Similarity=0.196  Sum_probs=153.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ..++|+|||||++|+++|.+|++ |++|+|||+.+.+++....   .+. ............+++.  ++++..+.....
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~---gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY---GIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec---cCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence            35899999999999999999976 9999999999876643211   110 0011111111112221  333332222111


Q ss_pred             ecceEEecCceEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHH----------------HHHhcCCeEEEEcCchh
Q 022896           88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAEN----------------QKIKSARSILIVGGGPT  147 (290)
Q Consensus        88 ~~~~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~----------------~~~~~~~~v~iiG~g~~  147 (290)
                      +   +. .+.....||.|++|||.. |.   +|+.....+......+                .....+++++|+|+|+.
T Consensus       219 ~---~~-~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~  294 (485)
T TIGR01317       219 D---IS-ADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT  294 (485)
T ss_pred             c---cC-HHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence            1   11 112235799999999997 43   4442222221111100                01135799999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccccCC-----hh------HHHHHHHHHHhCCcEE-EeCceEeecccCC-Cc-ee
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-----PK------AGDKTRDWLISKKVDV-KLGERVNLDSVSE-GS-DT  213 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~gi~~-~~~~~v~~i~~~~-~~-~~  213 (290)
                      ++++|..+.. ....+|++++..+.......     +.      ......+..+..|+++ ++++.+.++..++ +. ..
T Consensus       295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~  373 (485)
T TIGR01317       295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA  373 (485)
T ss_pred             HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence            9999876664 24568999987765432110     01      1222334444456654 4455665554432 22 11


Q ss_pred             EEc--------CCC-----------cEEeccEEEEccCCC-CCchhhcccccccccCCCCcEEec-CCccccCCCCeEEe
Q 022896          214 YLT--------STG-----------DTINADCHFLCTGKP-VGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAI  272 (290)
Q Consensus       214 v~~--------~~g-----------~~~~~d~vv~a~G~~-~~~~~l~~~~~~~~~~~~g~~~v~-~~~~~~~~~~vfa~  272 (290)
                      +.+        .+|           .++++|.||+|+|.. |+..++...++  +++++|++.++ ++++| +.|+|||+
T Consensus       374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa  450 (485)
T TIGR01317       374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA  450 (485)
T ss_pred             EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence            210        122           269999999999985 77888877665  55778988654 56776 89999999


Q ss_pred             ccccCcccc
Q 022896          273 GDITDIRVS  281 (290)
Q Consensus       273 Gd~~~~~~~  281 (290)
                      |||++.+..
T Consensus       451 GD~~~g~~~  459 (485)
T TIGR01317       451 GDCRRGQSL  459 (485)
T ss_pred             eccCCCcHH
Confidence            999986543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.94  E-value=5.7e-25  Score=187.86  Aligned_cols=262  Identities=15%  Similarity=0.125  Sum_probs=155.4

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhc---cCCcEEEEcCCCCcccchhhhhhhcCCcccc--ccccccccccc--cceEEee
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGK--RSVINHTDYLV--NGRIVAS   82 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~   82 (290)
                      ....++|+|||||||||+||.+|.   +|++|+|||+.+.+++...   ..+.+....  .....+..++.  ++.++..
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr---~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~n   99 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR---SGVAPDHPETKNVTNQFSRVATDDRVSFFGN   99 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe---eccCCCcchhHHHHHHHHHHHHHCCeEEEcC
Confidence            344689999999999999999996   4999999999998765332   223222211  11111122221  2233221


Q ss_pred             eeeeeecceEEecCceEEeccEEEEccCCCC----CCCCchHHHHH---HHH----------HHHHHHhcCCeEEEEcCc
Q 022896           83 PAINITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLN---QYQ----------AENQKIKSARSILIVGGG  145 (290)
Q Consensus        83 ~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~---~~~----------~~~~~~~~~~~v~iiG~g  145 (290)
                      .  .+.. .+..++. ...||.||+|+|+.+    .+|+.....+.   ++.          ........+++++|||+|
T Consensus       100 v--~vg~-dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgG  175 (491)
T PLN02852        100 V--TLGR-DVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQG  175 (491)
T ss_pred             E--EECc-cccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCC
Confidence            1  1111 2333333 347999999999873    45653221111   111          111112357999999999


Q ss_pred             hhHHHHHHHHhhh------------------C-CCCeEEEEecCccccccCCh-h-------------------------
Q 022896          146 PTGVELAGEIAVD------------------F-PEKKVTLVHKGSRLLEFIGP-K-------------------------  180 (290)
Q Consensus       146 ~~~~~~a~~l~~~------------------~-~~~~v~~~~~~~~~~~~~~~-~-------------------------  180 (290)
                      +.++++|..|...                  . .-.+|+++.|+......+.+ +                         
T Consensus       176 nvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~  255 (491)
T PLN02852        176 NVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPED  255 (491)
T ss_pred             HHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccch
Confidence            9999999988641                  0 23579999887642211110 0                         


Q ss_pred             ------------HHHHHHHHHHh---------CCcEEEeCceEeecccC--C-Cc---eeEE---c------------CC
Q 022896          181 ------------AGDKTRDWLIS---------KKVDVKLGERVNLDSVS--E-GS---DTYL---T------------ST  218 (290)
Q Consensus       181 ------------~~~~~~~~~~~---------~gi~~~~~~~v~~i~~~--~-~~---~~v~---~------------~~  218 (290)
                                  ..+.+.+...+         +++.+++.....++..+  + +.   +.+.   +            .+
T Consensus       256 ~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~t  335 (491)
T PLN02852        256 EEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGT  335 (491)
T ss_pred             hhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCC
Confidence                        11122222222         57888888887777532  1 22   1111   0            13


Q ss_pred             Cc--EEeccEEEEccCCC--CCchh-hcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          219 GD--TINADCHFLCTGKP--VGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       219 g~--~~~~d~vv~a~G~~--~~~~~-l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      |+  ++++|.||.+.|+.  |...+ +.. ...+..+.+|++.+|...++ +.|+|||+|||..+|.
T Consensus       336 ge~~~i~~D~Vi~aIG~~~~p~~~l~f~~-~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~  400 (491)
T PLN02852        336 GEFEDLPCGLVLKSIGYKSLPVDGLPFDH-KRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPT  400 (491)
T ss_pred             CCEEEEECCEEEEeecCCCCCCCCCcccc-CcCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCC
Confidence            33  68999999999997  43332 221 11234567899999987776 7999999999998765

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.93  E-value=5.8e-25  Score=176.51  Aligned_cols=268  Identities=20%  Similarity=0.263  Sum_probs=197.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhh----hhhcCCc------c-------------cc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASL----RAMVEPS------F-------------GK   64 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~----~~~~~~~------~-------------~~   64 (290)
                      ..+.-.+|||+|.+..+++...+.   +.+|++|..++.+.+.-..+    +...++.      |             ++
T Consensus       176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd  255 (659)
T KOG1346|consen  176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD  255 (659)
T ss_pred             cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence            346779999999999988888852   89999999887655432111    1111110      0             00


Q ss_pred             ccccccccccc----cceEE-eeeeeeeecc--eEEecCceEEeccEEEEccCCCCCCCC-------------chHHHHH
Q 022896           65 RSVINHTDYLV----NGRIV-ASPAINITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK-------------TRTERLN  124 (290)
Q Consensus        65 ~~~~~~~~~~~----~~~~~-~~~v~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~-------------~~~~~~~  124 (290)
                      .++..-.++..    ++.++ ...|..++..  .|.++||.++.||.++||||.+|.-..             .......
T Consensus       256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~  335 (659)
T KOG1346|consen  256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA  335 (659)
T ss_pred             cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence            11111111111    12333 3355566544  589999999999999999999975332             1122334


Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC--CCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCce
Q 022896          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF--PEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       125 ~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~--~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      +|..+..-....+++.|||+|..|.|+++.|...+  .+.+|+.++.....+.. ++..+.++..+.+++.|+.++++..
T Consensus       336 DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~  415 (659)
T KOG1346|consen  336 DFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAK  415 (659)
T ss_pred             HHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchh
Confidence            45555555566799999999999999999998654  35677777766555444 4556888889999999999999999


Q ss_pred             EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCC-CcEEecCCccccCCCCeEEeccccCccc
Q 022896          202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH-GMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~-g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      |+++..+.....+.++||.++..|.||+|+|..||.++++..+|.+  +++ |...+|..++.  ..|||++||++...+
T Consensus       416 v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLei--D~~lGGfrvnaeL~a--r~NvwvAGdaacF~D  491 (659)
T KOG1346|consen  416 VESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEI--DEKLGGFRVNAELKA--RENVWVAGDAACFED  491 (659)
T ss_pred             hhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccccee--ecccCcEEeeheeec--ccceeeecchhhhhc
Confidence            9999999999999999999999999999999999999999999855  554 88999999997  699999999988776


Q ss_pred             cc
Q 022896          281 SA  282 (290)
Q Consensus       281 ~~  282 (290)
                      ..
T Consensus       492 ~~  493 (659)
T KOG1346|consen  492 GV  493 (659)
T ss_pred             cc
Confidence            54

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.93  E-value=5.4e-25  Score=196.68  Aligned_cols=255  Identities=17%  Similarity=0.203  Sum_probs=158.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCC-ccccccccccccccc--cceEEeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ..++|+||||||+||++|+.|++ |++|+|||+.+.+|+.+..   .+.+ .+.........+++.  ++++.....  +
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~---gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~--v  383 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF---GIPPFKLDKTVLSQRREIFTAMGIDFHLNCE--I  383 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec---cCCcccCCHHHHHHHHHHHHHCCeEEEcCCc--c
Confidence            47999999999999999999976 9999999999987754321   1111 111111111111111  223322211  1


Q ss_pred             ecceEEecCceEEeccEEEEccCCCC----CCCCchHHHHHH---HH-----HHHH---------HHhcCCeEEEEcCch
Q 022896           88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLNQ---YQ-----AENQ---------KIKSARSILIVGGGP  146 (290)
Q Consensus        88 ~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~~---~~-----~~~~---------~~~~~~~v~iiG~g~  146 (290)
                      .. .+...+ ....||.|++|+|+.+    .+|+.....+..   |.     ....         ....+++++|+|+|.
T Consensus       384 ~~-~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~  461 (639)
T PRK12809        384 GR-DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD  461 (639)
T ss_pred             CC-cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence            11 112211 2346999999999873    345422211111   11     0000         012468999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-ee-EE---cC----
Q 022896          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DT-YL---TS----  217 (290)
Q Consensus       147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~-v~---~~----  217 (290)
                      ++.+++..+... ...+|+++.+.+.....   .....+. .+++.||++++.+.++++..++++ +. +.   ..    
T Consensus       462 ~a~d~a~~~~~~-Ga~~Vt~v~rr~~~~~~---~~~~e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  536 (639)
T PRK12809        462 TTMDCLRTSIRL-NAASVTCAYRRDEVSMP---GSRKEVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEP  536 (639)
T ss_pred             HHHHHHHHHHHc-CCCeEEEeeecCcccCC---CCHHHHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCc
Confidence            999999876642 33589999987543211   1122222 357789999999999888654332 21 11   10    


Q ss_pred             --C---------C--cEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEecCC----ccccCCCCeEEeccccCcc
Q 022896          218 --T---------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDEN----LRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       218 --~---------g--~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~~~----~~~~~~~~vfa~Gd~~~~~  279 (290)
                        +         |  .++++|.||+|+|.+|+. .++...++  .++++|++.+|++    ++| +.|+|||+||++.++
T Consensus       537 ~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g~  613 (639)
T PRK12809        537 GPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGI--KLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHGA  613 (639)
T ss_pred             CCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCc--ccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCCCc
Confidence              1         2  268999999999998863 55655444  5678899999863    676 799999999999876


Q ss_pred             cc
Q 022896          280 VS  281 (290)
Q Consensus       280 ~~  281 (290)
                      ..
T Consensus       614 ~~  615 (639)
T PRK12809        614 DL  615 (639)
T ss_pred             hH
Confidence            53

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.93  E-value=9.2e-26  Score=193.28  Aligned_cols=249  Identities=16%  Similarity=0.231  Sum_probs=153.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh------------------c-----C--------
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM------------------V-----E--------   59 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~------------------~-----~--------   59 (290)
                      ..++|+|||||++||+||++|.+ |++|+|||+++.+|+.|......                  .     +        
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            46899999999999999999976 99999999999999888432100                  0     0        


Q ss_pred             Cccccc-----------cc---cccccccc----c--c---eEEeeeeeeeecc----eEEecCc----eEEeccEEEEc
Q 022896           60 PSFGKR-----------SV---INHTDYLV----N--G---RIVASPAINITEN----EVLTAEG----RRVVYDYLVIA  108 (290)
Q Consensus        60 ~~~~~~-----------~~---~~~~~~~~----~--~---~~~~~~v~~~~~~----~v~~~~~----~~~~~~~vi~a  108 (290)
                      .+++..           .+   ....++++    .  .   -.++..|+.+++.    .|.+.++    .+..||+||+|
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvA  168 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVC  168 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence            011100           00   01111111    1  1   1245778777754    2444322    24679999999


Q ss_pred             cCC--CCCCCCc------hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChh
Q 022896          109 TGH--KDPVPKT------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK  180 (290)
Q Consensus       109 ~G~--~~~~p~~------~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~  180 (290)
                      +|.  .|.+|..      .+..+|...........+++|+|||+|.+|.|+|..|..  ...+|+++.+...+..     
T Consensus       169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~--~a~~V~l~~r~~~~~~-----  241 (461)
T PLN02172        169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK--VAKEVHIASRASESDT-----  241 (461)
T ss_pred             ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHH--hCCeEEEEEeeccccc-----
Confidence            995  4665541      122222222112233478999999999999999999997  4789999998754311     


Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN  260 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~  260 (290)
                           .+.+.....++..+..|..+.. ++  .+.+.||+.+++|.||+|||+.++.+||+..+. +..+.+....+-.+
T Consensus       242 -----~~~~~~~~~~v~~~~~I~~~~~-~g--~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~~v~~Ly~~  312 (461)
T PLN02172        242 -----YEKLPVPQNNLWMHSEIDTAHE-DG--SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDENRVEPLYKH  312 (461)
T ss_pred             -----cccCcCCCCceEECCcccceec-CC--eEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCCcchhhHHh
Confidence                 0011112334455556644432 22  377789998999999999999999999876331 11222221123333


Q ss_pred             ccccC-CCCeEEecccc
Q 022896          261 LRVKG-QKNIFAIGDIT  276 (290)
Q Consensus       261 ~~~~~-~~~vfa~Gd~~  276 (290)
                      .-... .|++.++|=..
T Consensus       313 ~f~~~~~p~LafiG~~~  329 (461)
T PLN02172        313 VFPPALAPGLSFIGLPA  329 (461)
T ss_pred             hcCCCCCCcEEEEeccc
Confidence            22223 48999999764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.93  E-value=4.4e-24  Score=183.40  Aligned_cols=263  Identities=24%  Similarity=0.341  Sum_probs=194.4

Q ss_pred             EEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--cccccccc-cccccce-EEeeeeeeee
Q 022896           16 VVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHT-DYLVNGR-IVASPAINIT   88 (290)
Q Consensus        16 vvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~v~~~~   88 (290)
                      ++|||+|++|+++|..|.+   +.+++++.++....+........+.....  ........ ....+.. .....+..++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            5899999999999998854   78898888887655443333222222111  11111101 0111233 3456788888


Q ss_pred             cc--eEEecCceEEeccEEEEccCCCCCCCC-------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 022896           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK-------TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF  159 (290)
Q Consensus        89 ~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~-------~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~  159 (290)
                      +.  .+.+.++ ++.||++++|||.+|..+.       ...................++++|+|+|..++++|..+..  
T Consensus        81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~--  157 (415)
T COG0446          81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAK--  157 (415)
T ss_pred             CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHH--
Confidence            76  5777777 8999999999999987653       2222333333333333336899999999999999999997  


Q ss_pred             CCCeEEEEecCccccccCC-hhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee---EEcCCCcEEeccEEEEccCCCC
Q 022896          160 PEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT---YLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       160 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~---v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+|++++..++++..+. +.+.+.+.+.++++||+++.+..+..++...+...   +...++..+++|.+++++|..|
T Consensus       158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p  237 (415)
T COG0446         158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP  237 (415)
T ss_pred             cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence            4899999999999988777 89999999999999999999999988887766533   5677888999999999999999


Q ss_pred             CchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          236 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       236 ~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +..+....... ....+|++.||+++++...++||++|||+..+...
T Consensus       238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~  283 (415)
T COG0446         238 NVVLANDALPG-LALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE  283 (415)
T ss_pred             cHHHHhhCccc-eeccCCCEEEccccccCCCCCEEeccceEeeeccc
Confidence            87777665422 34567899999999883389999999999987665

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.92  E-value=3e-24  Score=166.81  Aligned_cols=268  Identities=18%  Similarity=0.244  Sum_probs=179.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccc--hhhhhhhcCCccccccccccccc-cccceEEeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEIT--WASLRAMVEPSFGKRSVINHTDY-LVNGRIVASPAI   85 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~   85 (290)
                      .+++|+|||||.+|+++|..+.+   .-+|.|+|+.+.+.+.  |......+...  +....+..+. ..+..|+.++|.
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l--~~srr~~a~liP~~a~wi~ekv~  115 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSL--DSSRRKQASLIPKGATWIKEKVK  115 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhh--hhccCcccccccCCcHHHHHHHH
Confidence            57999999999999999999964   4689999999876543  33222222111  1112222222 234567778899


Q ss_pred             eeecc--eEEecCceEEeccEEEEccCCCC---CCCC-------------chHHHHHHHHHHHHHHhcCCeEEE------
Q 022896           86 NITEN--EVLTAEGRRVVYDYLVIATGHKD---PVPK-------------TRTERLNQYQAENQKIKSARSILI------  141 (290)
Q Consensus        86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~~---~~p~-------------~~~~~~~~~~~~~~~~~~~~~v~i------  141 (290)
                      .++|+  .|.+++|+++.||++|+|+|...   .+++             ......+.........+.++-+--      
T Consensus       116 ~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpi  195 (446)
T KOG3851|consen  116 EFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPI  195 (446)
T ss_pred             hcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCcc
Confidence            99887  69999999999999999999873   2333             223333443444444444433322      


Q ss_pred             --EcCchhHHHHHHHHhhhC-CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc-C
Q 022896          142 --VGGGPTGVELAGEIAVDF-PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-S  217 (290)
Q Consensus       142 --iG~g~~~~~~a~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~-~  217 (290)
                        .|+..-.+-++..+..++ -..++.++....-..-.--....+++.+..++++|++.+..++.+++.++....++. .
T Consensus       196 KCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~  275 (446)
T KOG3851|consen  196 KCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD  275 (446)
T ss_pred             ccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC
Confidence              344444445555443321 223444444322111122346888899999999999999999977777666644432 2


Q ss_pred             C-C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-CccccCCCCeEEeccccCccccccCC
Q 022896          218 T-G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVSASMI  285 (290)
Q Consensus       218 ~-g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-~~~~~~~~~vfa~Gd~~~~~~~~~~~  285 (290)
                      + |  ++++++.+-+.....+ ++.+....+   .+..||+.||. ++|++.+||||++|||.+.|+.++++
T Consensus       276 kPG~t~ei~yslLHv~Ppms~-pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaA  343 (446)
T KOG3851|consen  276 KPGVTEEIEYSLLHVTPPMST-PEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAA  343 (446)
T ss_pred             CCCceeEEeeeeeeccCCCCC-hhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhHH
Confidence            2 5  3688998888777765 788888764   37889999997 69999999999999999999998754

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.92  E-value=4.7e-24  Score=188.67  Aligned_cols=257  Identities=19%  Similarity=0.211  Sum_probs=156.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ....+|+||||||+||++|..|++ |++|+|+|+.+.+++.+...  ......+.+......+...  ++++........
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g--ip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~  212 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG--IPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE  212 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec--CCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence            346899999999999999999976 99999999999877544211  0000111111111011111  222221111100


Q ss_pred             ecceEEecCceEEeccEEEEccCCCCC----CCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHHhh
Q 022896           88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTERLNQYQAENQ------KIKSARSILIVGGGPTGVELAGEIAV  157 (290)
Q Consensus        88 ~~~~v~~~~~~~~~~~~vi~a~G~~~~----~p~~~~~~~~~~~~~~~------~~~~~~~v~iiG~g~~~~~~a~~l~~  157 (290)
                      +   +.. +.....||.+++|+|....    +++..............      ....+++++|+|+|.++++.+..+..
T Consensus       213 ~---~~~-~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~  288 (564)
T PRK12771        213 D---ITL-EQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARR  288 (564)
T ss_pred             c---CCH-HHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHH
Confidence            1   000 0112358999999998732    33311111111111111      12347899999999999999987665


Q ss_pred             hCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce------eEEc----C-------CC-
Q 022896          158 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD------TYLT----S-------TG-  219 (290)
Q Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~------~v~~----~-------~g-  219 (290)
                      . ...+++++.+.+...  +. .....+. .+.+.|++++++..+.++..++++.      .+..    .       +| 
T Consensus       289 l-ga~~v~ii~r~~~~~--~~-~~~~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~  363 (564)
T PRK12771        289 L-GAEEVTIVYRRTRED--MP-AHDEEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGE  363 (564)
T ss_pred             c-CCCEEEEEEecCccc--CC-CCHHHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCc
Confidence            2 347788888765321  11 1222233 3456799999999998886554331      1111    1       22 


Q ss_pred             -cEEeccEEEEccCCCCCchhhcc-cccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          220 -DTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       220 -~~~~~d~vv~a~G~~~~~~~l~~-~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                       .++++|.||+|+|..|+..++.+ .++  . +++|++.+|++.+.+++|+||++|||+..+..
T Consensus       364 ~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~  424 (564)
T PRK12771        364 EETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRT  424 (564)
T ss_pred             eEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccCCCCCEEeccCcCCCchH
Confidence             37999999999999998888875 344  3 67899999994444489999999999986543

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.88  E-value=3.2e-22  Score=173.67  Aligned_cols=252  Identities=22%  Similarity=0.333  Sum_probs=127.2

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh-------hc-------------CCccc--cc--ccc
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-------MV-------------EPSFG--KR--SVI   68 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~-------~~-------------~~~~~--~~--~~~   68 (290)
                      ++|+|||||++||++|..|.+ |+++++||+++.+|+.|..-..       ..             -.+++  ..  .+.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            689999999999999999975 9999999999999999963210       00             01111  00  000


Q ss_pred             ---ccccccc---------cceEEeeeeeeeecc---------eEEecC-c--eEEeccEEEEccCCC--CCCC-----C
Q 022896           69 ---NHTDYLV---------NGRIVASPAINITEN---------EVLTAE-G--RRVVYDYLVIATGHK--DPVP-----K  117 (290)
Q Consensus        69 ---~~~~~~~---------~~~~~~~~v~~~~~~---------~v~~~~-~--~~~~~~~vi~a~G~~--~~~p-----~  117 (290)
                         +..+|++         ..-.++..|..+...         .+.+.+ +  .+..+|+|++|+|..  |.+|     +
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G  161 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG  161 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence               0111111         112235566665431         244433 3  245799999999986  6555     3


Q ss_pred             ---chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-cc-----------------
Q 022896          118 ---TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EF-----------------  176 (290)
Q Consensus       118 ---~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-~~-----------------  176 (290)
                         +.+..+|+..........+|+|+|||+|.||.|+|.++..  ...+|++..|..... +.                 
T Consensus       162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~  239 (531)
T PF00743_consen  162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFS  239 (531)
T ss_dssp             GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-------------------------
T ss_pred             hhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEeccccccccccccccccccccccccc
Confidence               1222333333233344579999999999999999999986  366677666544311 00                 


Q ss_pred             ------CChhHHHH---------------------------------HHHHHHhCCcEEEeCceEeecccCCCceeEEcC
Q 022896          177 ------IGPKAGDK---------------------------------TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS  217 (290)
Q Consensus       177 ------~~~~~~~~---------------------------------~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~  217 (290)
                            +...+.+.                                 +...+....|++..  .|.++  ++  ..+.+.
T Consensus       240 ~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~--~~--~~v~F~  313 (531)
T PF00743_consen  240 SFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRF--TE--NSVIFE  313 (531)
T ss_dssp             -----------------------------------------------------------EE---EEEE---S--SEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc--cc--cccccc
Confidence                  00001111                                 11111112222221  12222  12  345678


Q ss_pred             CCcEE-eccEEEEccCCCCCchhhcccccccccCCCCcEEecCCcccc--CCCCeEEecccc
Q 022896          218 TGDTI-NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK--GQKNIFAIGDIT  276 (290)
Q Consensus       218 ~g~~~-~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~--~~~~vfa~Gd~~  276 (290)
                      ||+++ ++|.||+|||++...+||++..+..   .++.+.+-.+.-..  .+|++..+|=+.
T Consensus       314 DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~---~~~~~~LYk~vfp~~~~~ptLafIG~~~  372 (531)
T PF00743_consen  314 DGSTEEDVDVIIFCTGYKFSFPFLDESLIKV---DDNRVRLYKHVFPPNLDHPTLAFIGLVQ  372 (531)
T ss_dssp             TSEEEEE-SEEEE---EE---TTB-TTTT-S----SSSSSEETTTEETETTSTTEEESS-SB
T ss_pred             ccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence            89765 6999999999999999998765432   23334444443221  358999999864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.85  E-value=3.2e-19  Score=143.91  Aligned_cols=270  Identities=17%  Similarity=0.196  Sum_probs=173.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcccchhhhh-----------h---hcCCcccc----------
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLR-----------A---MVEPSFGK----------   64 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~~~~~~~~-----------~---~~~~~~~~----------   64 (290)
                      ...+|++.||-||+.|+.|..|.+  +.+.+.+||.+.+..+...+-           .   ..++..+.          
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~   82 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG   82 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence            446999999999999999999976  689999999987542222110           0   01111000          


Q ss_pred             ---------cc---ccccccccccc------eEEeeeee---eeecc-----eEEecCceEEeccEEEEccCCCCCCCC-
Q 022896           65 ---------RS---VINHTDYLVNG------RIVASPAI---NITEN-----EVLTAEGRRVVYDYLVIATGHKDPVPK-  117 (290)
Q Consensus        65 ---------~~---~~~~~~~~~~~------~~~~~~v~---~~~~~-----~v~~~~~~~~~~~~vi~a~G~~~~~p~-  117 (290)
                               ..   ..++.+|++++      --+...|.   .++.+     .+.+.++..++++.+|+.+|.+|.+|+ 
T Consensus        83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~  162 (436)
T COG3486          83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPC  162 (436)
T ss_pred             hHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChH
Confidence                     00   01111222211      11344555   33333     256667779999999999999999998 


Q ss_pred             ----chHHHHHHHHHHHH--HHhcCCeEEEEcCchhHHHHHHHHhhhCCCC--eEEEEecCcccccc---------CChh
Q 022896          118 ----TRTERLNQYQAENQ--KIKSARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEF---------IGPK  180 (290)
Q Consensus       118 ----~~~~~~~~~~~~~~--~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~--~v~~~~~~~~~~~~---------~~~~  180 (290)
                          .....+|+..-...  .....++|.|||+|.+|+|+...|.......  ++.|+.|+..+.+.         +.|+
T Consensus       163 f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~  242 (436)
T COG3486         163 FRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPE  242 (436)
T ss_pred             HhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCch
Confidence                11234444433322  3334556999999999999999988654444  48899998876542         1221


Q ss_pred             HHH------------------------------HHHHHH-------HhCCcEEEeCceEeecccCCCc-eeEEc-----C
Q 022896          181 AGD------------------------------KTRDWL-------ISKKVDVKLGERVNLDSVSEGS-DTYLT-----S  217 (290)
Q Consensus       181 ~~~------------------------------~~~~~~-------~~~gi~~~~~~~v~~i~~~~~~-~~v~~-----~  217 (290)
                      .+.                              ++-+.+       .+.++.++.++++..++.++++ +.+.+     .
T Consensus       243 y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~  322 (436)
T COG3486         243 YTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETG  322 (436)
T ss_pred             hHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCC
Confidence            111                              111111       1246788999999999888776 55543     2


Q ss_pred             CCcEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEecCCccccC----CCCeEEeccccCccc
Q 022896          218 TGDTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDENLRVKG----QKNIFAIGDITDIRV  280 (290)
Q Consensus       218 ~g~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~~~~~~~~----~~~vfa~Gd~~~~~~  280 (290)
                      +.++++.|.||+|||+.... .|++...-.+.++++|.+.++++++...    .-.||+.|-+...+.
T Consensus       323 ~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHG  390 (436)
T COG3486         323 ELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHG  390 (436)
T ss_pred             CceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccc
Confidence            23478999999999998544 4887766555788999999999866532    236999887765443

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.84  E-value=5.5e-22  Score=153.54  Aligned_cols=170  Identities=28%  Similarity=0.412  Sum_probs=107.7

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCc--ccccccc-----ccccc--cccceE-Eeee
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPS--FGKRSVI-----NHTDY--LVNGRI-VASP   83 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~--~~~~~~-~~~~   83 (290)
                      ||+|||||+||++||.+|++ +.+++++|+.+...+....+.......  .......     ++.+.  ..++++ +...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            79999999999999999985 999999998875432211111110000  0000000     11111  123444 4556


Q ss_pred             eeeeecc--eE----------EecCceEEeccEEEEccCCCCC---CCCc----hHHHHHHHHHHHHHHhcCCeEEEEcC
Q 022896           84 AINITEN--EV----------LTAEGRRVVYDYLVIATGHKDP---VPKT----RTERLNQYQAENQKIKSARSILIVGG  144 (290)
Q Consensus        84 v~~~~~~--~v----------~~~~~~~~~~~~vi~a~G~~~~---~p~~----~~~~~~~~~~~~~~~~~~~~v~iiG~  144 (290)
                      +..++..  .+          ...++.++.||++|+|+|..|.   +|+.    ....+.++..........++++|+| 
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG-  159 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG-  159 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc-
Confidence            6666544  11          2345678999999999998854   4542    1133445555555555566888888 


Q ss_pred             chhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEec
Q 022896          145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINA  224 (290)
Q Consensus       145 g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~  224 (290)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (201)
T PF07992_consen  160 --------------------------------------------------------------------------------  159 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEccCCCCCchhh-cccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          225 DCHFLCTGKPVGSDWL-KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       225 d~vv~a~G~~~~~~~l-~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                                  .++| +..++  +++++|++.||+++|+ +.||||++|||++.++
T Consensus       160 ------------~~~l~~~~~~--~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~~  201 (201)
T PF07992_consen  160 ------------TEFLAEKLGV--ELDENGFIKVDENLQT-SVPGIYAAGDCAGIYD  201 (201)
T ss_dssp             ------------TTTSTHHTTS--TBTTTSSBEEBTTSBB-SSTTEEE-GGGBEESE
T ss_pred             ------------cccccccccc--cccccccccccccccc-ccccccccccccccCC
Confidence                        4455 44444  6688999999999998 6999999999998764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.83  E-value=3.4e-20  Score=140.43  Aligned_cols=264  Identities=20%  Similarity=0.284  Sum_probs=156.1

Q ss_pred             cEEEEcCChHHHHHHHHhc---cCCcEEEEcCCCCcccch--hhhhhhc-CCccccccccccccccccceEEeeeeeeee
Q 022896           15 RVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITW--ASLRAMV-EPSFGKRSVINHTDYLVNGRIVASPAINIT   88 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~---~g~~v~vie~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   88 (290)
                      +.+|||||+||.+||.+|+   +..+++++...+....-.  .....+. ..+........+..-++  .++.+ |...+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~--~~~~~-v~~~~   77 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFR--RFLND-VVTWD   77 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHH--HHHHh-hhhhc
Confidence            4689999999999999996   488999999987543111  0111000 00000000000000000  12222 33333


Q ss_pred             cc--eEEecCceEEeccEEEEccCCCCCCCCc-------hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 022896           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPKT-------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF  159 (290)
Q Consensus        89 ~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~  159 (290)
                      .+  .+.+.+|.++.|++|++|+|..|..--.       ..+...+.+.+...+...|.|+|+|.|..++|++.++.   
T Consensus        78 s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk---  154 (334)
T KOG2755|consen   78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK---  154 (334)
T ss_pred             cccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh---
Confidence            22  5888899999999999999999753210       11122333444456678899999999999999999886   


Q ss_pred             CCCeEEEEecCcccccc-CChhHHHHHHHHH------------------------------------------------H
Q 022896          160 PEKKVTLVHKGSRLLEF-IGPKAGDKTRDWL------------------------------------------------I  190 (290)
Q Consensus       160 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~------------------------------------------------~  190 (290)
                       ..+|+|....+.+... +++...+-+.-.+                                                +
T Consensus       155 -~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~ese  233 (334)
T KOG2755|consen  155 -ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESE  233 (334)
T ss_pred             -cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhh
Confidence             5677777766555432 2232222222111                                                0


Q ss_pred             hCCcEEEeCceEeecccCCCceeEEc---CCC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccC
Q 022896          191 SKKVDVKLGERVNLDSVSEGSDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG  265 (290)
Q Consensus       191 ~~gi~~~~~~~v~~i~~~~~~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~  265 (290)
                      ++-++...++-++....++. ..+..   ..+  ..+.||+++.|+|..|+..+.-...+  ...++|.+.||..+++ +
T Consensus       234 er~l~~l~~~~~~~~d~~d~-~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-s  309 (334)
T KOG2755|consen  234 NRSLTYLRNCVITSTDTSDN-LSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-S  309 (334)
T ss_pred             hhhhHHhhhheeeeccchhh-cccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-c
Confidence            00111111111111111111 11111   111  25789999999999999986655444  5678999999999998 7


Q ss_pred             CCCeEEeccccCccccccCCCCCC
Q 022896          266 QKNIFAIGDITDIRVSASMIFPQV  289 (290)
Q Consensus       266 ~~~vfa~Gd~~~~~~~~~~~~~~~  289 (290)
                      .|++||+||+++.--..+..|.|.
T Consensus       310 lpdvFa~gDvctt~~~~s~~wqQm  333 (334)
T KOG2755|consen  310 LPDVFAAGDVCTTTWEPSTLWQQM  333 (334)
T ss_pred             ccceeeecceeccCCCCchhhhcc
Confidence            999999999999555555555543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.83  E-value=3.3e-20  Score=153.11  Aligned_cols=222  Identities=19%  Similarity=0.228  Sum_probs=119.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcccchhhhhh-----------h---cCCccc-------------
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLRA-----------M---VEPSFG-------------   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~~~~~~~~~-----------~---~~~~~~-------------   63 (290)
                      .+|+++||.||++|+.|..|.+  ..++..||+.+.+..+...+..           .   .++..+             
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            4899999999999999999975  6999999998864322211100           0   000000             


Q ss_pred             ---------ccccccccccc-------ccceEEeeeeeeeecc--------eEEe----cCceEEeccEEEEccCCCCCC
Q 022896           64 ---------KRSVINHTDYL-------VNGRIVASPAINITEN--------EVLT----AEGRRVVYDYLVIATGHKDPV  115 (290)
Q Consensus        64 ---------~~~~~~~~~~~-------~~~~~~~~~v~~~~~~--------~v~~----~~~~~~~~~~vi~a~G~~~~~  115 (290)
                               ......+.+|+       ...-.+...|+.+.+.        .|.+    .++..+.++.||+|+|..|.+
T Consensus        82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i  161 (341)
T PF13434_consen   82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI  161 (341)
T ss_dssp             HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred             hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence                     00011111122       1213456677777653        2444    245689999999999999999


Q ss_pred             CCch------HHHHHHHHHHH--HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CC
Q 022896          116 PKTR------TERLNQYQAEN--QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IG  178 (290)
Q Consensus       116 p~~~------~~~~~~~~~~~--~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~  178 (290)
                      |...      ...+|......  ......++|+|||+|.+|.|++..|..+.+..+|+++.|++.+.+.         +.
T Consensus       162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~  241 (341)
T PF13434_consen  162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS  241 (341)
T ss_dssp             -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred             CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence            8722      22223322222  2245789999999999999999999987666799999998775431         11


Q ss_pred             h-------------------------------hHHHHHHHH-----H-HhCCcEEEeCceEeecccCCC-ceeEEcCC--
Q 022896          179 P-------------------------------KAGDKTRDW-----L-ISKKVDVKLGERVNLDSVSEG-SDTYLTST--  218 (290)
Q Consensus       179 ~-------------------------------~~~~~~~~~-----~-~~~gi~~~~~~~v~~i~~~~~-~~~v~~~~--  218 (290)
                      |                               ++.+.+-+.     + .+..++++.+++|+.++.+++ ++.+.+.+  
T Consensus       242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~  321 (341)
T PF13434_consen  242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ  321 (341)
T ss_dssp             HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT
T ss_pred             chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC
Confidence            1                               222222111     2 223588999999999988774 67766543  


Q ss_pred             -C--cEEeccEEEEccCCC
Q 022896          219 -G--DTINADCHFLCTGKP  234 (290)
Q Consensus       219 -g--~~~~~d~vv~a~G~~  234 (290)
                       +  .++++|.||+|||++
T Consensus       322 ~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  322 TGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             T--EEEEEESEEEE---EE
T ss_pred             CCCeEEEecCEEEEcCCcc
Confidence             2  378999999999985

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.80  E-value=7.5e-19  Score=158.10  Aligned_cols=227  Identities=15%  Similarity=0.119  Sum_probs=124.6

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc---------hhhhhh----------------hcCCccc
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT---------WASLRA----------------MVEPSFG   63 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~---------~~~~~~----------------~~~~~~~   63 (290)
                      ....++|+|||||||||+||++|++ |++|++||+.+..+.+         |..+..                .+..+++
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~  459 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWD  459 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccch
Confidence            3457999999999999999999975 9999999987543221         111110                0111111


Q ss_pred             cccccccccccc---cceEEeeeeeeeecceEEecCceEEeccEEEEccCC-CC---CCCCchHHHHHHHHHHHHH----
Q 022896           64 KRSVINHTDYLV---NGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH-KD---PVPKTRTERLNQYQAENQK----  132 (290)
Q Consensus        64 ~~~~~~~~~~~~---~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~-~~---~~p~~~~~~~~~~~~~~~~----  132 (290)
                      ..........+.   ++.+..+..  +.. .+..++-....||+|++|+|+ .|   .+|+.....+.+...++..    
T Consensus       460 k~~l~~i~~il~~g~~v~~~~gv~--lG~-dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~  536 (1028)
T PRK06567        460 KNNLDILRLILERNNNFKYYDGVA--LDF-NITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSG  536 (1028)
T ss_pred             HHHHHHHHHHHhcCCceEEECCeE--ECc-cCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhc
Confidence            110000000010   112211211  111 122222234679999999999 34   4555332222222221111    


Q ss_pred             ----------HhcCCeEEEEcCchhHHHHHHHHhhh--------------------------------------------
Q 022896          133 ----------IKSARSILIVGGGPTGVELAGEIAVD--------------------------------------------  158 (290)
Q Consensus       133 ----------~~~~~~v~iiG~g~~~~~~a~~l~~~--------------------------------------------  158 (290)
                                ...+++|+|||||++|+|+|.....+                                            
T Consensus       537 ~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v  616 (1028)
T PRK06567        537 GAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEEL  616 (1028)
T ss_pred             ccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchh
Confidence                      12368999999999999999833210                                            


Q ss_pred             ----CCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEc---------------C
Q 022896          159 ----FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLT---------------S  217 (290)
Q Consensus       159 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~---------------~  217 (290)
                          .....|+++.|...--........+++. ...+.||++.+...+.++..++++  ..+.+               .
T Consensus       617 ~~l~~~~G~VtIvYRr~~~empA~~~~~eEv~-~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~  695 (1028)
T PRK06567        617 RKVFNKLGGATVYYRGRLQDSPAYKLNHEELI-YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQS  695 (1028)
T ss_pred             hhhhccCCceEEEecCChhhCCCCCCCHHHHH-HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccc
Confidence                0011277777665321111111123333 345669999999988888765432  11110               1


Q ss_pred             ---------------CCcEEeccEEEEccCCCCCchhh
Q 022896          218 ---------------TGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       218 ---------------~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                                     ...+++||.||+|+|..|+..+.
T Consensus       696 ~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~  733 (1028)
T PRK06567        696 HEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD  733 (1028)
T ss_pred             cccccCCcCcccCCCccccccCCEEEEecccCCccccc
Confidence                           11368999999999999987664

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.79  E-value=8.4e-19  Score=148.70  Aligned_cols=260  Identities=21%  Similarity=0.124  Sum_probs=154.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccc-cccccccccccc--ceEEeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGK-RSVINHTDYLVN--GRIVASPAIN   86 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~v~~   86 (290)
                      ...++|+||||||+||++|..|.+ |++|+++|+.+..|+..   .+.+...... +......+++..  +++....  .
T Consensus       121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll---~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~--~  195 (457)
T COG0493         121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLL---LYGIPDFKLPKDILDRRLELLERSGVEFKLNV--R  195 (457)
T ss_pred             CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeE---EecCchhhccchHHHHHHHHHHHcCeEEEEcc--e
Confidence            345999999999999999999986 99999999999877432   2221111111 111111222221  2222111  1


Q ss_pred             eecceEEecCceEEeccEEEEccCCC-C---CCCCchHHHHHHHHHHHHH---------------HhcCCeEEEEcCchh
Q 022896           87 ITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQK---------------IKSARSILIVGGGPT  147 (290)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~vi~a~G~~-~---~~p~~~~~~~~~~~~~~~~---------------~~~~~~v~iiG~g~~  147 (290)
                      +.. .+..++- .-.||.+++++|.. |   .+|+.....++.....+..               ...+++++|||+|.+
T Consensus       196 vG~-~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~T  273 (457)
T COG0493         196 VGR-DITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDT  273 (457)
T ss_pred             ECC-cCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCC
Confidence            111 1222222 23469999999987 3   3555332222222221111               012499999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccc--cccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-ee-E---E--cC-
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRL--LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DT-Y---L--TS-  217 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~-v---~--~~-  217 (290)
                      ++|++...... ....++.+.+...-  .............+...+.|++..+......+..++++ +. +   .  .. 
T Consensus       274 a~D~~~t~~r~-Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~  352 (457)
T COG0493         274 AMDCAGTALRL-GAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGE  352 (457)
T ss_pred             HHHHHHHHhhc-CCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccC
Confidence            99999766542 33467766532221  01111123344555677788888877777667664443 11 1   1  00 


Q ss_pred             -------------CCc--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCc-cccCCCCeEEeccccCcc
Q 022896          218 -------------TGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL-RVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       218 -------------~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~-~~~~~~~vfa~Gd~~~~~  279 (290)
                                   .|+  ++.+|.|+.|+|..+...........+..+..|.+.+++.+ ++ +.|++||.||+..+.
T Consensus       353 ~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g~  429 (457)
T COG0493         353 YVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRGA  429 (457)
T ss_pred             cccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeeeCceeccch
Confidence                         122  57899999999988764443222223456788999999998 55 899999999999863

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.78  E-value=8.9e-19  Score=155.63  Aligned_cols=263  Identities=18%  Similarity=0.172  Sum_probs=143.2

Q ss_pred             hhccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccc-cccccccc--cceEEee
Q 022896            7 QQSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSV-INHTDYLV--NGRIVAS   82 (290)
Q Consensus         7 ~~~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~   82 (290)
                      +|.....++|.|||+||+||+||-+|.+ ||.|+|+||.+..|+.   +.+.+.....+... .+..+++.  +++++..
T Consensus      1779 pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl---l~ygipnmkldk~vv~rrv~ll~~egi~f~tn 1855 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL---LMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTN 1855 (2142)
T ss_pred             CcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce---eeecCCccchhHHHHHHHHHHHHhhCceEEee
Confidence            3445567999999999999999999987 9999999999988743   22332222212111 12222221  2222211


Q ss_pred             eeeeeecceEEecCceEEeccEEEEccCCC-C---CCCCchHHHH-------HHHHHH-HHH-------HhcCCeEEEEc
Q 022896           83 PAINITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERL-------NQYQAE-NQK-------IKSARSILIVG  143 (290)
Q Consensus        83 ~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~-~---~~p~~~~~~~-------~~~~~~-~~~-------~~~~~~v~iiG  143 (290)
                        +.+..+ + .-|+-.-.+|.+|+|+|+. |   .+|+.+...+       +..... +..       ..++|+|+|+|
T Consensus      1856 --~eigk~-v-s~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivig 1931 (2142)
T KOG0399|consen 1856 --TEIGKH-V-SLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIG 1931 (2142)
T ss_pred             --cccccc-c-cHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEEC
Confidence              122221 2 2233445789999999998 3   4566333222       222111 110       12579999999


Q ss_pred             CchhHHHHHHHHhhhCCCCeEEEEecCccc---------cccCCh----hH-HHHHHHHH---------------HhCCc
Q 022896          144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRL---------LEFIGP----KA-GDKTRDWL---------------ISKKV  194 (290)
Q Consensus       144 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~---------~~~~~~----~~-~~~~~~~~---------------~~~gi  194 (290)
                      ||.+|-+|...-.. +....|.-++--+.+         .+.++.    ++ ..+.++..               ...+-
T Consensus      1932 ggdtg~dcigtsvr-hg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g 2010 (2142)
T KOG0399|consen 1932 GGDTGTDCIGTSVR-HGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNG 2010 (2142)
T ss_pred             CCCccccccccchh-hccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCC
Confidence            99999998765442 223333333311111         111100    11 11111111               11111


Q ss_pred             EEEeCceEeecccCCC---ceeEE-cC-CCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-CccccCCCC
Q 022896          195 DVKLGERVNLDSVSEG---SDTYL-TS-TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKN  268 (290)
Q Consensus       195 ~~~~~~~v~~i~~~~~---~~~v~-~~-~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-~~~~~~~~~  268 (290)
                      + +.+-+..+++++.+   .+.+. .. +.+.++||.+++|.|+.. ++......++++.+++..+.+-. .+.+ ..++
T Consensus      2011 ~-v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~g-pe~~~~~~~~~~~d~rsni~t~~~~y~t-~v~~ 2087 (2142)
T KOG0399|consen 2011 N-VTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVG-PEKSVIEQLNLKTDPRSNILTPKDSYST-DVAK 2087 (2142)
T ss_pred             c-eeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccC-cchhhhhhcCcccCccccccCCCccccc-cccc
Confidence            1 11222223344322   23332 22 235789999999999864 44444444555778887766543 4666 7999


Q ss_pred             eEEeccccCccc
Q 022896          269 IFAIGDITDIRV  280 (290)
Q Consensus       269 vfa~Gd~~~~~~  280 (290)
                      +||+|||..+..
T Consensus      2088 vfaagdcrrgqs 2099 (2142)
T KOG0399|consen 2088 VFAAGDCRRGQS 2099 (2142)
T ss_pred             eeecccccCCce
Confidence            999999987643

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.77  E-value=7.5e-19  Score=136.20  Aligned_cols=154  Identities=27%  Similarity=0.390  Sum_probs=88.2

Q ss_pred             EEEcCChHHHHHHHHhcc-CCc-EEEEcCCCCcccchhhhhhh---cCCccc-------c---ccc------------cc
Q 022896           17 VVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAM---VEPSFG-------K---RSV------------IN   69 (290)
Q Consensus        17 vIIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~~~~~~~~~~~---~~~~~~-------~---~~~------------~~   69 (290)
                      +||||||+||++|.+|.+ |.+ ++|||+++.+|+.|......   ..+...       .   ...            ..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            699999999999999975 988 99999999999888743211   111100       0   000            00


Q ss_pred             ---cccccc------cceE-Eeeeeeeeecc----eEEecCceEEeccEEEEccCC--CCCCCCchH----HHHHHHHHH
Q 022896           70 ---HTDYLV------NGRI-VASPAINITEN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT----ERLNQYQAE  129 (290)
Q Consensus        70 ---~~~~~~------~~~~-~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~--~~~~p~~~~----~~~~~~~~~  129 (290)
                         ..++++      +..+ .+..|+.+...    .+.+.++..+.+++||+|||.  .|..|....    ..++.....
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~  160 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR  160 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence               001111      1122 34666666654    477777878999999999997  466554222    222222212


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      ......+++|+|||+|.+|++++..|.+.  +.+|+++.|++.
T Consensus       161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~~~--g~~V~~~~R~~~  201 (203)
T PF13738_consen  161 DPEDFKGKRVVVVGGGNSAVDIAYALAKA--GKSVTLVTRSPI  201 (203)
T ss_dssp             TTGGCTTSEEEEE--SHHHHHHHHHHTTT--CSEEEEEESS--
T ss_pred             ChhhcCCCcEEEEcChHHHHHHHHHHHhh--CCEEEEEecCCC
Confidence            22234679999999999999999999974  699999999874

...

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.76  E-value=4.4e-18  Score=143.65  Aligned_cols=218  Identities=20%  Similarity=0.310  Sum_probs=128.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh--------h--hhcC----------Cc--cccc---
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL--------R--AMVE----------PS--FGKR---   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~--------~--~~~~----------~~--~~~~---   65 (290)
                      ..++++|||||+|||++|+.|.+ |+++++|||.+.+|+.|...        .  ..+.          ++  ++.+   
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            46899999999999999999976 99999999999999888644        1  0000          01  1111   


Q ss_pred             c-------ccccccccccce---E--Eee---eeeeeec-c-eEEecCc----eEEeccEEEEccCCC--CCCCCc----
Q 022896           66 S-------VINHTDYLVNGR---I--VAS---PAINITE-N-EVLTAEG----RRVVYDYLVIATGHK--DPVPKT----  118 (290)
Q Consensus        66 ~-------~~~~~~~~~~~~---~--~~~---~v~~~~~-~-~v~~~~~----~~~~~~~vi~a~G~~--~~~p~~----  118 (290)
                      .       ...+..+.+...   .  ...   .|..++. . .|...+.    ...-+|.|++|+|..  |.+|..    
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~  164 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG  164 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence            0       001111111111   1  233   2233332 2 2433332    467899999999998  666652    


Q ss_pred             ----hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCc
Q 022896          119 ----RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  194 (290)
Q Consensus       119 ----~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  194 (290)
                          .+..+|+..........+++|+|||+|+||.|++..+...  ..++.+..+ ......   .    ... ....++
T Consensus       165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~--ak~v~~~~~-~~~~~~---~----~~~-~~~~~~  233 (448)
T KOG1399|consen  165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRV--AKEVHLSVV-SPKVHV---E----PPE-ILGENL  233 (448)
T ss_pred             hhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHh--ccCcceeee-cccccc---c----ccc-eeecce
Confidence                2345555554545556789999999999999999997753  445555543 100000   0    000 000122


Q ss_pred             EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896          195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      ..+..  |+  ...+.+. +...++....+|.+|+|||+....++++....
T Consensus       234 ~~~~~--i~--~~~e~~~-~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~  279 (448)
T KOG1399|consen  234 WQVPS--IK--SFTEDGS-VFEKGGPVERVDRIIFCTGYKYKFPFLETLGL  279 (448)
T ss_pred             EEccc--cc--cccCcce-EEEcCceeEEeeeEEEeeeeEeecceeccCCc
Confidence            22211  32  1222222 23346668899999999999988888877653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.76  E-value=4.8e-18  Score=145.34  Aligned_cols=162  Identities=23%  Similarity=0.322  Sum_probs=108.5

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCc-EEEEcCCCCcccchhhhhhh-c----C---Cccccccc------c-----
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAM-V----E---PSFGKRSV------I-----   68 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~~~~~~~~~~~-~----~---~~~~~~~~------~-----   68 (290)
                      ...++||+|||||++||++|++|++ |.+ ++||||++..|+.|...+.- +    .   ..++...+      .     
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~   84 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI   84 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccH
Confidence            3457999999999999999999976 777 99999999988887643210 0    0   00000000      0     


Q ss_pred             --cccccccc----ceE-Eeeeeeeeecc------eEEecCceE--EeccEEEEccCCC--CCCCC------chHHHHHH
Q 022896           69 --NHTDYLVN----GRI-VASPAINITEN------EVLTAEGRR--VVYDYLVIATGHK--DPVPK------TRTERLNQ  125 (290)
Q Consensus        69 --~~~~~~~~----~~~-~~~~v~~~~~~------~v~~~~~~~--~~~~~vi~a~G~~--~~~p~------~~~~~~~~  125 (290)
                        .+..++..    ..+ ++..|..++.+      .|.++++..  +.+|+||+|||..  |.+|.      +.+..+|+
T Consensus        85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS  164 (443)
T COG2072          85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHS  164 (443)
T ss_pred             HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEch
Confidence              01111111    011 22333333332      466666655  4599999999986  66555      44556666


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ..........+|+|+|||+|.||.+++..|...  +.+|+++.|++..
T Consensus       165 ~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~--ga~vt~~qRs~~~  210 (443)
T COG2072         165 ADWPNPEDLRGKRVLVIGAGASAVDIAPELAEV--GASVTLSQRSPPH  210 (443)
T ss_pred             hcCCCccccCCCeEEEECCCccHHHHHHHHHhc--CCeeEEEecCCCc
Confidence            655555566899999999999999999999974  6999999988764

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.69  E-value=4.7e-15  Score=122.16  Aligned_cols=180  Identities=19%  Similarity=0.163  Sum_probs=110.4

Q ss_pred             EEeccEEEEccCCCCCCCCc--------h--HHHHHHHHHHHHH-------------HhcCCeEEEE---cCch------
Q 022896           99 RVVYDYLVIATGHKDPVPKT--------R--TERLNQYQAENQK-------------IKSARSILIV---GGGP------  146 (290)
Q Consensus        99 ~~~~~~vi~a~G~~~~~p~~--------~--~~~~~~~~~~~~~-------------~~~~~~v~ii---G~g~------  146 (290)
                      ++....+|+|||-.+.-+..        .  --+..++..+...             -..+++++.|   |+..      
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~  377 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP  377 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence            57788999999987543320        0  1111222222211             1245777764   5433      


Q ss_pred             --------hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcC-
Q 022896          147 --------TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS-  217 (290)
Q Consensus       147 --------~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~-  217 (290)
                              .++..|..++++++..+++++.-.-+.   +.....+.+++.=++.||+++.+..-.-.+..++...|... 
T Consensus       378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa---fG~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~Ed  454 (622)
T COG1148         378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA---FGKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVED  454 (622)
T ss_pred             hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec---cCccHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEe
Confidence                    356667777777888888877643322   23244444454445789999988644333444444444322 


Q ss_pred             --CC--cEEeccEEEEccCCCCCc---hhhcccccccccCCCCcEEec-CCccc--cCCCCeEEeccccCcccccc
Q 022896          218 --TG--DTINADCHFLCTGKPVGS---DWLKDTILKDSLDTHGMLMVD-ENLRV--KGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       218 --~g--~~~~~d~vv~a~G~~~~~---~~l~~~~~~~~~~~~g~~~v~-~~~~~--~~~~~vfa~Gd~~~~~~~~~  283 (290)
                        .|  .++++|.||+++|..|..   .+...  ++++.+++||+... +.++.  ++.++||.+|-|.++.+.++
T Consensus       455 Tl~g~~~e~~~DLVVLa~Gmep~~g~~kia~i--LgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~  528 (622)
T COG1148         455 TLTGEVKEIEADLVVLATGMEPSEGAKKIAKI--LGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIAD  528 (622)
T ss_pred             ccCccceecccceEEEeeccccCcchHHHHHh--cCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHH
Confidence              33  378999999999998743   33334  44467889988765 44432  26899999999998887664

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.64  E-value=6.2e-15  Score=124.74  Aligned_cols=138  Identities=15%  Similarity=0.215  Sum_probs=78.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-c-CCcEEEEcCCCCcccchhhhhhhcCCcccc--cccccccccc--ccceEEeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASLRAMVEPSFGK--RSVINHTDYL--VNGRIVASPAI   85 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~v~   85 (290)
                      ..++|+|||||||||.||.+|. + |++|+|||+.+.+++.+.   ..+.++...  .....+...+  .++.+.. . .
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR---~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g-n-v  112 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR---YGVAPDHIHVKNTYKTFDPVFLSPNYRFFG-N-V  112 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE---EeCCCCCccHHHHHHHHHHHHhhCCeEEEe-e-e
Confidence            4578999999999999999873 3 999999999998875433   333332211  1111111111  1222321 1 1


Q ss_pred             eeecceEEecCceEEeccEEEEccCCCC-CCC------------Cch----HHHHHHHHH----------------H---
Q 022896           86 NITENEVLTAEGRRVVYDYLVIATGHKD-PVP------------KTR----TERLNQYQA----------------E---  129 (290)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~vi~a~G~~~-~~p------------~~~----~~~~~~~~~----------------~---  129 (290)
                      .+.. .+..++- ...||.||+|+|+.+ .+|            +..    .........                .   
T Consensus       113 ~VG~-Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ay  190 (506)
T PTZ00188        113 HVGV-DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNY  190 (506)
T ss_pred             EecC-ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccccccc
Confidence            1111 1222222 337999999999883 334            210    001100000                0   


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHh
Q 022896          130 NQKIKSARSILIVGGGPTGVELAGEIA  156 (290)
Q Consensus       130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~  156 (290)
                      +..+...++++|||+|+.++|+|..|.
T Consensus       191 L~p~~~~~~vvVIG~GNVAlDvARiL~  217 (506)
T PTZ00188        191 LNSFENFTTSIIIGNGNVSLDIARILI  217 (506)
T ss_pred             ccccCCCCcEEEECCCchHHHHHHHHc
Confidence            000114578999999999999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.63  E-value=1.6e-14  Score=122.14  Aligned_cols=142  Identities=14%  Similarity=0.023  Sum_probs=97.4

Q ss_pred             EEEEcCchhHHHHH-HHHhh--hCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE-
Q 022896          139 ILIVGGGPTGVELA-GEIAV--DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-  214 (290)
Q Consensus       139 v~iiG~g~~~~~~a-~~l~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v-  214 (290)
                      -+|++.+..|+|.+ ..+..  ...+.+|+++...+..++..  ++.+.+.+.+++.|++++.++.|++++.+++.+.. 
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v  295 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV  295 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence            35667777888887 44431  13689999998887766553  78888999999999999999999998876665443 


Q ss_pred             EcCCCc--EEeccEEEEccCCCCCchhhc------c--cccccc-------cC----------CCCcEEecCCccc----
Q 022896          215 LTSTGD--TINADCHFLCTGKPVGSDWLK------D--TILKDS-------LD----------THGMLMVDENLRV----  263 (290)
Q Consensus       215 ~~~~g~--~~~~d~vv~a~G~~~~~~~l~------~--~~~~~~-------~~----------~~g~~~v~~~~~~----  263 (290)
                      ...+|+  .+++|.+|+|+|..++..+..      +  .++++.       |.          ..-.+.+|++++.    
T Consensus       296 ~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~  375 (422)
T PRK05329        296 WTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQ  375 (422)
T ss_pred             EeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCC
Confidence            334443  589999999999865543311      0  111110       00          1112556666654    


Q ss_pred             --cCCCCeEEeccccCccccc
Q 022896          264 --KGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       264 --~~~~~vfa~Gd~~~~~~~~  282 (290)
                        +..+|+||+|++.+++++.
T Consensus       376 g~~~~~nl~a~G~vl~g~d~~  396 (422)
T PRK05329        376 GGPVIENLYAAGAVLGGYDPI  396 (422)
T ss_pred             CCeeccceEEeeehhcCCchH
Confidence              2479999999999999875

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.59  E-value=4.8e-14  Score=114.55  Aligned_cols=70  Identities=19%  Similarity=0.074  Sum_probs=59.1

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccC--CCCC-------chhhccccccc
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--KPVG-------SDWLKDTILKD  247 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--~~~~-------~~~l~~~~~~~  247 (290)
                      ...+...+...+++.||++++++.|.+++.++....+.+++|+++.||.+|+|+|  +.|.       .+++++.++.+
T Consensus       110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             hHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            3478889999999999999999999999998888999999998999999999999  5553       25666666543

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.58  E-value=9.3e-14  Score=111.35  Aligned_cols=139  Identities=21%  Similarity=0.238  Sum_probs=84.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCcccccc--cccccccccc--ceEEeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRS--VINHTDYLVN--GRIVASPA   84 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~v   84 (290)
                      ....|.|||+||||+.+|.+|-+   +.+|+|+|+.+.++   ...++.+.++-+.-.  ...+......  ..++..  
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF---GLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gN--   93 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF---GLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGN--   93 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc---ceeeeccCCCCcchhhHHHHHHHHhhccceEEEec--
Confidence            45699999999999999999842   79999999998765   334444444433211  1112222111  111111  


Q ss_pred             eeeecceEEecCceEEeccEEEEccCCC----CCCCCchHHHHHHHHHHHHHH------------hcCCeEEEEcCchhH
Q 022896           85 INITENEVLTAEGRRVVYDYLVIATGHK----DPVPKTRTERLNQYQAENQKI------------KSARSILIVGGGPTG  148 (290)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~vi~a~G~~----~~~p~~~~~~~~~~~~~~~~~------------~~~~~v~iiG~g~~~  148 (290)
                      ..+.. .+.+.+ -+-.||.+++|.|+.    ..+|+.....+.+...+..+.            ..+.+++|||.|+.+
T Consensus        94 v~vG~-dvsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVA  171 (468)
T KOG1800|consen   94 VKVGR-DVSLKE-LTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVA  171 (468)
T ss_pred             ceecc-cccHHH-HhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchh
Confidence            01111 122211 134699999999987    468885444443333332221            136899999999999


Q ss_pred             HHHHHHHhh
Q 022896          149 VELAGEIAV  157 (290)
Q Consensus       149 ~~~a~~l~~  157 (290)
                      +++|..|..
T Consensus       172 lDvARiLls  180 (468)
T KOG1800|consen  172 LDVARILLS  180 (468)
T ss_pred             hhhhhhhhC
Confidence            999998863

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.43  E-value=3.4e-12  Score=107.83  Aligned_cols=58  Identities=22%  Similarity=0.160  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      ..+.+.+.+.+++.|++++++++|++++.++++ +.+.+++++++.+|.||+|+|-.+.
T Consensus       109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY  167 (409)
T ss_dssp             HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence            367888999999999999999999999887777 8888867779999999999997653

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.43  E-value=2.8e-12  Score=83.33  Aligned_cols=80  Identities=28%  Similarity=0.425  Sum_probs=73.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcC
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS  217 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~  217 (290)
                      +++|+|+|..|+|+|..+..  .+.+|+++++.+.+.+.+++.+...+.+.+++.||++++++.+++++.+++++.+.++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~   78 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE   78 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence            68999999999999999997  5899999999999998899999999999999999999999999999988877557776


Q ss_pred             CC
Q 022896          218 TG  219 (290)
Q Consensus       218 ~g  219 (290)
                      ||
T Consensus        79 ~g   80 (80)
T PF00070_consen   79 DG   80 (80)
T ss_dssp             TS
T ss_pred             cC
Confidence            65

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.42  E-value=7e-13  Score=111.72  Aligned_cols=66  Identities=24%  Similarity=0.155  Sum_probs=53.7

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      ...+.+.+.+.+++.|++++.+++|+++..+++.+. +.+.+|+ +.+|.||+|+|.+. ..++...+.
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~~  212 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLGL  212 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTTT
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeecccc
Confidence            347899999999999999999999999999888877 9999996 99999999999875 456666544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.41  E-value=4.2e-11  Score=100.02  Aligned_cols=159  Identities=22%  Similarity=0.331  Sum_probs=95.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc----CCcEEEEcCCCCcccchh------------------------------hhhhh-
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWA------------------------------SLRAM-   57 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~----g~~v~vie~~~~~~~~~~------------------------------~~~~~-   57 (290)
                      +++|+|||+|++|+.+|.+|.+    ...+.|||+...+|.-..                              .+... 
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence            4799999999999999999943    334999999987551100                              00000 


Q ss_pred             -----------cCCcccccccc--cccc----ccc-----cceEEeeeeeeeecc------eEEecCceEEeccEEEEcc
Q 022896           58 -----------VEPSFGKRSVI--NHTD----YLV-----NGRIVASPAINITEN------EVLTAEGRRVVYDYLVIAT  109 (290)
Q Consensus        58 -----------~~~~~~~~~~~--~~~~----~~~-----~~~~~~~~v~~~~~~------~v~~~~~~~~~~~~vi~a~  109 (290)
                                 ..+.++.+.+.  .+.+    +..     .+.+++..++.+.+.      .+...+|....+|-+|+||
T Consensus        81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                       00001100000  0000    000     134455666555544      3667788889999999999


Q ss_pred             CCCCCCCCchHH-------HHHHHH--HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          110 GHKDPVPKTRTE-------RLNQYQ--AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       110 G~~~~~p~~~~~-------~~~~~~--~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      |..+..+.....       .+.+..  ..+.......+|+|+|+|.+.++....+..+....+++.+.|..
T Consensus       161 gh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         161 GHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             cCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            998544431000       010000  22334455677999999999999999998765556788888654

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.33  E-value=1.1e-11  Score=103.95  Aligned_cols=209  Identities=16%  Similarity=0.078  Sum_probs=114.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhhhhhhcCCcccccccccccc-ccccc-eEEeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD-YLVNG-RIVASPAIN   86 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~   86 (290)
                      +++||+|||||+.|+++|++|++ +  ++|+|+||...++...+...+.+.+.-......++.. +.... .........
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            36999999999999999999975 4  9999999999877554443333222211000001110 00000 000000000


Q ss_pred             eecceEEecCceEEeccEEEEccCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCC----
Q 022896           87 ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK----  162 (290)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~----  162 (290)
                           ..   -......++++|+|..-      ...+...........-. .+       ..++- ..+.+.-|..    
T Consensus        82 -----~~---~~f~~~g~l~vA~~e~e------~~~L~~l~~~~~~ngv~-~~-------~~ld~-~~i~~~eP~l~~~~  138 (429)
T COG0579          82 -----LG---IPFINCGKLSVATGEEE------VERLEKLYERGKANGVF-DL-------EILDK-EEIKELEPLLNEGA  138 (429)
T ss_pred             -----hC---CcccccCeEEEEEChHH------HHHHHHHHHHHhhCCCc-ce-------eecCH-HHHHhhCccccccc
Confidence                 00   11334467888877541      12222111111110000 00       00111 1111111111    


Q ss_pred             eEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC-ceeEEcCCCcE-EeccEEEEccCCCCCchhh
Q 022896          163 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDT-INADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       163 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~l  240 (290)
                      .-.+..+....  -...++...+.+.+.++|++++++++|+.++..++ ...+.+.+|++ ++|+.||.|.|... .+++
T Consensus       139 ~aal~~p~~gi--V~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la  215 (429)
T COG0579         139 VAALLVPSGGI--VDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLA  215 (429)
T ss_pred             eeeEEcCCCce--EcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHH
Confidence            11122222111  12236788899999999999999999999999888 46667888876 99999999999874 6777


Q ss_pred             cccccc
Q 022896          241 KDTILK  246 (290)
Q Consensus       241 ~~~~~~  246 (290)
                      ...+++
T Consensus       216 ~~~g~~  221 (429)
T COG0579         216 QMAGIP  221 (429)
T ss_pred             HHhCCC
Confidence            776664

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.31  E-value=4.8e-11  Score=101.54  Aligned_cols=64  Identities=20%  Similarity=0.088  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+.+.++ ++.+|.||+|+|.+. ..+....++
T Consensus       146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~-~~l~~~~g~  209 (380)
T TIGR01377       146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT-SKLLSPLGI  209 (380)
T ss_pred             HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch-HHHhhhccc
Confidence            6777888888999999999999999987777777777666 799999999999864 345444333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.30  E-value=7.5e-11  Score=101.23  Aligned_cols=55  Identities=15%  Similarity=-0.108  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.+++|++++.. ++. ..+.+.+| ++.++.||+|+|.+.
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            56667788889999999999999998654 344 45677777 699999999988664

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.29  E-value=4.4e-11  Score=95.02  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ...+||+||||||+||++|++|++ |.+|+|+||+..++
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G   57 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG   57 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            347999999999999999999986 99999999998765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.28  E-value=4.5e-11  Score=103.60  Aligned_cols=64  Identities=13%  Similarity=-0.014  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHh----CC--cEEEeCceEeecccCCC-ceeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896          180 KAGDKTRDWLIS----KK--VDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       180 ~~~~~~~~~~~~----~g--i~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      .+...+.+.+++    .|  ++++.+++|+.++.+++ .+.+.+.+| ++.+|.||+|+|.+. ..++...++
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S-~~La~~~Gi  282 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYS-LLFAQKMGY  282 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhH-HHHHHHhCC
Confidence            678888888888    77  88999999999987644 467777777 699999999999884 567766554

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.28  E-value=6.7e-11  Score=101.75  Aligned_cols=56  Identities=20%  Similarity=0.141  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++.|+++..+++.+.....+|.++.+|.||.|+|...
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence            56777788888899999999999988766665443445667899999999999753

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.28  E-value=4.5e-11  Score=102.71  Aligned_cols=61  Identities=15%  Similarity=0.123  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC-----cEEeccEEEEccCCCCCchhhc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+.+.++     .++.+|.||+|+|.+. ..++.
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s-~~l~~  263 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS-RALAA  263 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh-HHHHH
Confidence            5677888889999999999999999887666665543332     3789999999999874 34443

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.27  E-value=1.1e-10  Score=99.68  Aligned_cols=56  Identities=13%  Similarity=0.009  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC-CcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+..++.|.+++.++.++.+..++++..+.... +.++.++.||.|.|...
T Consensus        96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence            567788889999999999999999999888775544333 36899999999999754

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.26  E-value=1.3e-09  Score=91.62  Aligned_cols=106  Identities=17%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCC--cEEeccEEEEccCCCCCchhhccc--------cc
Q 022896          177 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTG--DTINADCHFLCTGKPVGSDWLKDT--------IL  245 (290)
Q Consensus       177 ~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g--~~~~~d~vv~a~G~~~~~~~l~~~--------~~  245 (290)
                      ....+.+.+.+.+++.|++++.++.|+++..+++.+. +.+.++  ..+.+|.+|+|+|.+-+..++.+.        ++
T Consensus       261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L  340 (419)
T TIGR03378       261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGL  340 (419)
T ss_pred             cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCC
Confidence            3457888999999999999999999999887777644 444555  479999999999998333333321        12


Q ss_pred             ccc-------cCC----------CCcEEecCCcccc----CCCCeEEeccccCccccc
Q 022896          246 KDS-------LDT----------HGMLMVDENLRVK----GQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       246 ~~~-------~~~----------~g~~~v~~~~~~~----~~~~vfa~Gd~~~~~~~~  282 (290)
                      ++.       |..          .-.+.+|+++|..    ..+|+|++|-+.+++++.
T Consensus       341 ~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~  398 (419)
T TIGR03378       341 DVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPI  398 (419)
T ss_pred             CcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChH
Confidence            221       111          1236788888831    289999999999998864

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.26  E-value=6.6e-11  Score=101.00  Aligned_cols=64  Identities=14%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI  244 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~  244 (290)
                      ..+...+.+.+++.|++++.+++++.++.+++.+.+.+.+| ++.+|.||+|+|.+. ..++...+
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s-~~l~~~~g  212 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS-DRLAKMAG  212 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch-HHHHHHhC
Confidence            47888889999999999999999998887776677777766 799999999999875 34444333

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.25  E-value=1.2e-10  Score=98.94  Aligned_cols=61  Identities=20%  Similarity=0.095  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      ..+...+.+.+.+.|++++.+++|++++.+++.+.+.+++| .+.+|.||+|+|.+. ..++.
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~  209 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV-KDLLP  209 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch-hhhcc
Confidence            35677777788889999999999999988777777888777 799999999999874 34444

>PRK10015 oxidoreductase; Provisional

Probab=99.24  E-value=1.6e-10  Score=99.37  Aligned_cols=56  Identities=14%  Similarity=0.056  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++.|+.+..+++.+.....++.++.+|.||.|.|...
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s  164 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS  164 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence            56667778888899999999999888766555443333455799999999999754

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.22  E-value=7.1e-10  Score=96.19  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=36.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-----CCcEEEEcCCCCcccchh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-----g~~v~vie~~~~~~~~~~   52 (290)
                      ....+++|||||++||+||.+|.+     |.+|+|+|+++.+|+...
T Consensus        20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence            346899999999999999999964     689999999999887654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.22  E-value=2.3e-10  Score=91.25  Aligned_cols=97  Identities=16%  Similarity=0.078  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCC-c-eeEEcC-----------CCcEEeccEEEEccCCCCCc-hhhccccc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S-DTYLTS-----------TGDTINADCHFLCTGKPVGS-DWLKDTIL  245 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~-~~v~~~-----------~g~~~~~d~vv~a~G~~~~~-~~l~~~~~  245 (290)
                      .+...+.+.+++.|++++.++.+.++..+++ . ..+...           +..++.++.||.|+|..... ..+.....
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~  184 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP  184 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence            6778888888999999999999988876554 3 222211           22478999999999976532 22211110


Q ss_pred             --ccc-------cCCC-CcEEecCCccccCCCCeEEeccccCc
Q 022896          246 --KDS-------LDTH-GMLMVDENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       246 --~~~-------~~~~-g~~~v~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                        ...       +... ....|+.+-+.  +|++|++|=+++.
T Consensus       185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~  225 (257)
T PRK04176        185 ELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANA  225 (257)
T ss_pred             CcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhh
Confidence              000       1111 22233333333  8999999977654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.19  E-value=3e-10  Score=97.02  Aligned_cols=57  Identities=14%  Similarity=0.043  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+++.|++++.++++++++.+++.+.+++.+|+++.+|.||.|.|..+.
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            677778888888999999999999998887778888888889999999999999864

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.19  E-value=1.8e-10  Score=99.68  Aligned_cols=66  Identities=21%  Similarity=0.144  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHh-CCcEEEeCceEeecccC-CCceeEE---cCCCc--EEeccEEEEccCCCCCchhhccccc
Q 022896          179 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVS-EGSDTYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       179 ~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~-~~~~~v~---~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      ..+.+.+.+.+.+ .|++++.+++|+.++.+ ++.+.+.   +.+++  ++.+|.||+|+|.+. ..++...++
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~Gi  256 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSGI  256 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence            3677778777754 59999999999988766 5556554   34453  689999999999985 677776654

>PRK06847 hypothetical protein; Provisional

Probab=99.18  E-value=2.2e-10  Score=97.34  Aligned_cols=58  Identities=21%  Similarity=0.059  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+++.|++++.++.+++++.+++.+.+.+.+|+++.+|.||.|.|..+..
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV  165 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence            6777888888888999999999999987777788888889899999999999987644

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.18  E-value=2.8e-10  Score=100.73  Aligned_cols=66  Identities=11%  Similarity=-0.155  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEc---CCC--cEEeccEEEEccCCCCCchhhccccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      ..+...+...++++|++++.+++|+.+..+++.+ .+.+   .++  .++.++.||.|+|.+. ..+....++
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa-~~l~~~~g~  220 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG-QHIAEYADL  220 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH-HHHHHhcCC
Confidence            3677778888899999999999999988766542 2332   233  3789999999999885 445444443

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.17  E-value=3e-10  Score=97.23  Aligned_cols=58  Identities=12%  Similarity=0.076  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+.+. +++++.++.+++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV  168 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence            4666777777666 499999999999987777788888888899999999999987543

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.17  E-value=8e-10  Score=87.85  Aligned_cols=197  Identities=17%  Similarity=0.241  Sum_probs=110.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc--chhhhhhhcCCcccccccccc-----ccccccceEEee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI--TWASLRAMVEPSFGKRSVINH-----TDYLVNGRIVAS   82 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   82 (290)
                      .+..|++|||||..|+++|++|++ |.+++++|+-+.+-.  ........++..+.+..+..+     ..|..       
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~-------   77 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN-------   77 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh-------
Confidence            346899999999999999999976 999999999774321  222223334444433322221     11110       


Q ss_pred             eeeeeecceEEecCceEEeccEEEEccCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCC-
Q 022896           83 PAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPE-  161 (290)
Q Consensus        83 ~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~-  161 (290)
                               .....+..+......+-.|..      +.+.+.+.......-....+++          ...++.+++++ 
T Consensus        78 ---------~~~~~g~~~~~~t~~~~~~~~------e~~~~~sv~~~~k~~~l~h~~l----------~seEvrk~fP~~  132 (399)
T KOG2820|consen   78 ---------LPEESGVKLHCGTGLLISGDP------ERQRLDSVAANLKRKGLAHSVL----------ISEEVRKRFPSN  132 (399)
T ss_pred             ---------ChhhhceeecccceeeecCcH------HHHHHHHHHHHHhhhhhhhhhh----------hHHHHHHhCCCC
Confidence                     011112222222222221111      1122233332222222222332          23455555552 


Q ss_pred             Ce-----EEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccC---CCceeEEcCCCcEEeccEEEEccCC
Q 022896          162 KK-----VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       162 ~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~---~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .+     +.++......  -...+..+.+...+++.|+.++.+..++.++..   +..+.|.+.+|..+.++.+|+++|.
T Consensus       133 ~~l~d~~~G~~n~~gGv--i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga  210 (399)
T KOG2820|consen  133 IPLPDGWQGVVNESGGV--INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA  210 (399)
T ss_pred             ccCCcchhhcccccccE--eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence            11     1111111111  123367788899999999999999999877643   3338888999988999999999999


Q ss_pred             CCCchhhcc
Q 022896          234 PVGSDWLKD  242 (290)
Q Consensus       234 ~~~~~~l~~  242 (290)
                      +- ..+|..
T Consensus       211 Wi-~klL~~  218 (399)
T KOG2820|consen  211 WI-NKLLPT  218 (399)
T ss_pred             HH-HhhcCc
Confidence            86 456663

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.17  E-value=4e-10  Score=96.26  Aligned_cols=57  Identities=11%  Similarity=0.006  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+++. |++++.++.++.++.+++++.+.+.+|+++.+|.||.|.|..+.
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence            5666777777766 99999999999988777777788888889999999999998764

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.16  E-value=6.1e-10  Score=94.79  Aligned_cols=58  Identities=17%  Similarity=0.127  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcC-CCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTS-TGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~-~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+.+.+ ++++.+++|+.++.+++.+.+++. +|+++++|.+|-|-|..+..
T Consensus       105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v  164 (387)
T COG0654         105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV  164 (387)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence            68888888888765 999999999999998888778777 99999999999999987543

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.16  E-value=7.4e-10  Score=93.73  Aligned_cols=52  Identities=25%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+.+. |++++.+++|+.++..    .+.+.+| .+.+|.||+|+|.+.
T Consensus       145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence            36777787777765 9999999999888642    5677777 478999999999874

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.15  E-value=5.7e-10  Score=97.14  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHHHhCC-cEEEeCceEeecccCCCc-eeEEc---CCCc--EEeccEEEEccCCCCCchhhccccc
Q 022896          179 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       179 ~~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      ..+...+.+.+++.| ++++.+++|+.++.++++ +.+.+   .+|+  ++.++.||+|+|.+. ..++...++
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s-~~L~~~~Gi  255 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA-LPLLQKSGI  255 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence            367888888888876 899999999998875554 55543   3453  689999999999985 667766554

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.15  E-value=4.6e-10  Score=96.31  Aligned_cols=57  Identities=14%  Similarity=0.051  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+.+.|++++.++.++.++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus       112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence            678888888888999999999999998777778888888889999999999998754

>PRK07190 hypothetical protein; Provisional

Probab=99.15  E-value=5.3e-10  Score=97.53  Aligned_cols=56  Identities=16%  Similarity=0.048  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.+++++.++.+++++.+.+.+|+++.++.||.|.|...
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            46666777888899999999999999888887777777888999999999999865

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.14  E-value=6.9e-10  Score=94.72  Aligned_cols=56  Identities=14%  Similarity=-0.022  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++.| ++++ ++.+++++.+++.+.+.+.+|+++.+|.+|.|.|..+.
T Consensus       112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~  168 (388)
T PRK07608        112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW  168 (388)
T ss_pred             HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence            67778888888887 9999 88998888777778888888888999999999998753

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.13  E-value=1.4e-09  Score=89.22  Aligned_cols=56  Identities=11%  Similarity=0.108  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC-CcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+++.|++++.++.++.+..+++.+.+...+ +.++++|.||.|+|...
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            577778888888999999999999888777766555443 45799999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02463 lycopene beta cyclase

Probab=99.13  E-value=1.6e-09  Score=93.08  Aligned_cols=56  Identities=20%  Similarity=0.133  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+.+.|++++ ..+|++++.+++...+.+++|+++.+|.||.|+|..+.
T Consensus       115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            577778888888899997 56888888877778888889989999999999998653

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.13  E-value=5e-10  Score=96.08  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+++.|++++.++.+++++.+++++.+.+.+|+++.+|.+|.|.|..+..
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~v  170 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAV  170 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchh
Confidence            5666777778888999999999999988777888888888899999999999987643

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.12  E-value=3.8e-11  Score=106.97  Aligned_cols=100  Identities=13%  Similarity=0.105  Sum_probs=64.6

Q ss_pred             hcCCeEEEEcCch--hHHHHHHHHhhhCCCCeEEEEecCcccccc--------------CChhHHHHHHHHHHhCCcEEE
Q 022896          134 KSARSILIVGGGP--TGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------IGPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       134 ~~~~~v~iiG~g~--~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~gi~~~  197 (290)
                      ....++.++|++.  .+.+.+..+..  .+..++++.+...++..              ....+...+.+.+++.|++++
T Consensus       155 ~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~  232 (574)
T PRK12842        155 PPLKTITFIGMMFNSSNADLKHFFNA--TRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPIL  232 (574)
T ss_pred             CCcccccccceecccchHHHHHHHhh--ccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEE
Confidence            4567888899877  56666666553  34444443332222211              113577778888899999999


Q ss_pred             eCceEeecccCCCce-eEE--cCCCc-EEecc-EEEEccCCCC
Q 022896          198 LGERVNLDSVSEGSD-TYL--TSTGD-TINAD-CHFLCTGKPV  235 (290)
Q Consensus       198 ~~~~v~~i~~~~~~~-~v~--~~~g~-~~~~d-~vv~a~G~~~  235 (290)
                      .++.++++..+++.+ .+.  ..+++ .+.++ .||+|+|-.+
T Consensus       233 ~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        233 TGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             eCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            999999988766542 233  33343 47786 7999999665

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.12  E-value=1e-09  Score=95.52  Aligned_cols=55  Identities=13%  Similarity=-0.008  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.|++++.++.|+.++. ++.+.+.+.+| ++.+|.||+|+|.+.
T Consensus       183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s  237 (460)
T TIGR03329       183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWM  237 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccc
Confidence            36788888999999999999999988874 34466777777 699999999999663

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK08013 oxidoreductase; Provisional

Probab=99.11  E-value=1.3e-09  Score=93.26  Aligned_cols=58  Identities=7%  Similarity=-0.087  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+...+.+.+++. |++++.+++++.++.+++.+.+.+.+|+++.+|.||-|-|..+..
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v  170 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWL  170 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence            5667777777774 899999999999988777888888889999999999999987543

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.11  E-value=6.8e-10  Score=96.53  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCC-ceeEE---cCCCc--EEeccEEEEccCCCCCchhhccccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~~~v~---~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      ..+...+.+.+++.|++++.+++|++++.+++ .+.+.   +.+|+  ++.+|.||+|+|.+. ..++...++
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s-~~La~~~Gi  249 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA-LPLLQKSGI  249 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch-HHHHHHcCC
Confidence            47888899999999999999999999887543 44453   23342  689999999999885 566666554

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.11  E-value=1.5e-09  Score=92.61  Aligned_cols=56  Identities=13%  Similarity=0.116  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+.+. ++. +.+++++.++.+++++.+.+.+|+++.+|.||.|.|..+.
T Consensus       112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  168 (388)
T PRK07494        112 LLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP  168 (388)
T ss_pred             HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence            5667777777776 466 7899999988778888888888889999999999998753

>TIGR00275 flavoprotein, HI0933 family

Probab=99.09  E-value=3.3e-09  Score=90.50  Aligned_cols=57  Identities=19%  Similarity=0.109  Sum_probs=47.1

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ...+...+.+.+++.|++++.++.+++++.+++.+.+.+ +++++.+|.||+|+|...
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence            346788888999999999999999999877666666666 456899999999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK09897 hypothetical protein; Provisional

Probab=99.09  E-value=1.8e-09  Score=94.35  Aligned_cols=145  Identities=17%  Similarity=0.277  Sum_probs=80.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcc-c-chhh------hh----------------hhcC------
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE-I-TWAS------LR----------------AMVE------   59 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~-~-~~~~------~~----------------~~~~------   59 (290)
                      +++|+|||||++|+++|.+|.+   ..+|+|||++..+| + .|..      +.                .+..      
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~   80 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH   80 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence            3689999999999999999954   46999999987654 1 1111      00                0000      


Q ss_pred             -------------Ccccccccc-c-ccc----ccc-----c--ceEE-eeeeeeeecc----eEEecC-ceEEeccEEEE
Q 022896           60 -------------PSFGKRSVI-N-HTD----YLV-----N--GRIV-ASPAINITEN----EVLTAE-GRRVVYDYLVI  107 (290)
Q Consensus        60 -------------~~~~~~~~~-~-~~~----~~~-----~--~~~~-~~~v~~~~~~----~v~~~~-~~~~~~~~vi~  107 (290)
                                   ..+..+... . +.+    +..     +  +.+. ...|+.+...    .+.+.+ +..+.+|.||+
T Consensus        81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL  160 (534)
T PRK09897         81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI  160 (534)
T ss_pred             HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence                         011111000 0 000    000     0  1222 3467777543    344434 46789999999


Q ss_pred             ccCCCCC-CCCchHHHH-HHHH-HHHHHHhcCCeEEEEcCchhHHHHHHHHhhh
Q 022896          108 ATGHKDP-VPKTRTERL-NQYQ-AENQKIKSARSILIVGGGPTGVELAGEIAVD  158 (290)
Q Consensus       108 a~G~~~~-~p~~~~~~~-~~~~-~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~  158 (290)
                      |+|..+. .+......+ ..+. ...... .+.+|+|+|.|.+++|.+..|..+
T Consensus       161 AtGh~~p~~~~~~~~yi~~pw~~~~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        161 ATGHVWPDEEEATRTYFPSPWSGLMEAKV-DACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             CCCCCCCCCChhhccccCCCCcchhhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence            9998632 111100000 0000 111122 368999999999999999888754

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.08  E-value=2.1e-09  Score=93.59  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=34.9

Q ss_pred             EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      +++++++|++++.+++++.+.+.+|+++.+|.||+|+..
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence            899999999999888778888888889999999999874

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.08  E-value=1.5e-09  Score=93.56  Aligned_cols=62  Identities=19%  Similarity=0.112  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCCCchhhccc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGSDWLKDT  243 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~  243 (290)
                      .+...+.+.+++.|++++.+++|++++.+++.+ .+.+.++ ++.+|.||+|+|.+. ..++...
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~-~~l~~~~  264 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS-TALLKPL  264 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch-HHHHHHh
Confidence            677788888899999999999999988766654 4555544 799999999999875 3444443

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.08  E-value=4.3e-10  Score=98.17  Aligned_cols=54  Identities=20%  Similarity=0.168  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .+.+.+.+.+++.|++|+++++|++|..++++ +++...+|+.+++|.||.+...
T Consensus       225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            78999999999999999999999999998875 7788888878999999998876

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.07  E-value=1.3e-09  Score=93.92  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCC-C--cEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST-G--DTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~-g--~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+.+. |++++.++.+++++.+++.+.+.+.+ +  .++++|.||.|.|..+..
T Consensus       122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~v  183 (415)
T PRK07364        122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPI  183 (415)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchh
Confidence            4556666666664 79999999999988777776666543 2  369999999999987643

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=99.07  E-value=7.2e-09  Score=85.90  Aligned_cols=72  Identities=21%  Similarity=0.306  Sum_probs=61.1

Q ss_pred             cCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          169 KGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      +.+++.....+.+.+.+.+.+++.|+++++++.|.+++..+++ ..+.+++|+++++|.||+|+|... .+++.
T Consensus       163 ~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg-~dw~~  235 (486)
T COG2509         163 YQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG-RDWFE  235 (486)
T ss_pred             cccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch-HHHHH
Confidence            4456666677789999999999999999999999999988875 677888999999999999999875 44444

>PRK06834 hypothetical protein; Provisional

Probab=99.07  E-value=2.1e-09  Score=93.96  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+...+.+.+++.|++++.+++++.++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence            5777788888889999999999999988888888887788889999999999987644

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.06  E-value=2.9e-09  Score=90.78  Aligned_cols=57  Identities=12%  Similarity=-0.024  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+.+.| ++++.++.+++++.+++++.+.+.+|+++.+|.||.|.|....
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK  164 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence            67777888888887 9999999999998877788888889989999999999998653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.06  E-value=9.5e-10  Score=99.86  Aligned_cols=56  Identities=11%  Similarity=0.049  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++ |++++.++.|++++.+++.+.+.+.+|..+.+|.||+|+|.+.
T Consensus       408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence            3678888888888 9999999999998877777778888887788999999999875

>PRK09126 hypothetical protein; Provisional

Probab=99.04  E-value=5.9e-09  Score=89.11  Aligned_cols=57  Identities=9%  Similarity=0.113  Sum_probs=45.1

Q ss_pred             HHHHHHHHH-HhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          181 AGDKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       181 ~~~~~~~~~-~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      +.+.+.+.+ +..|++++.++.+++++.+++.+.+.+++|+++.+|.||.|.|..+..
T Consensus       112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v  169 (392)
T PRK09126        112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSAT  169 (392)
T ss_pred             HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchh
Confidence            344444444 446999999999999887777778888888899999999999987643

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.04  E-value=1.4e-08  Score=86.94  Aligned_cols=57  Identities=7%  Similarity=-0.134  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      ++.+.+.+.++..|.+++.+++|+++..++++  ..+.+.+|+++.++.||....+.|.
T Consensus       233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            78888888899999999999999999877544  6788889999999999998888764

>PRK07233 hypothetical protein; Provisional

Probab=99.03  E-value=1.8e-09  Score=93.62  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      .+.+.+.+.+++.|++++.++.|++++.+++++.+...+++++++|.||+|++..
T Consensus       199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence            6788888889999999999999999988777765555677789999999999854

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.02  E-value=3.9e-09  Score=89.89  Aligned_cols=58  Identities=10%  Similarity=-0.001  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+...+.+.+.+ .|++++.++++++++.+++++.+.+.+|.++++|.||.|.|..+..
T Consensus       111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v  169 (384)
T PRK08849        111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV  169 (384)
T ss_pred             HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence            344455555544 4799999999999988888888888899999999999999987654

>PRK07588 hypothetical protein; Provisional

Probab=99.01  E-value=2.3e-09  Score=91.56  Aligned_cols=57  Identities=7%  Similarity=-0.039  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+...+.+.+. .+++++.++++++++.+++++.+.+.+|+++++|.||.|.|..+..
T Consensus       104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v  160 (391)
T PRK07588        104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV  160 (391)
T ss_pred             HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence            45555555443 4899999999999988888888888899999999999999987644

>PRK06184 hypothetical protein; Provisional

Probab=99.01  E-value=2.7e-09  Score=94.03  Aligned_cols=56  Identities=14%  Similarity=0.038  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc---CCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+.+.|++++.++++++++.+++++.+.+   .+++++.+|.||.|.|..+
T Consensus       110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S  168 (502)
T PRK06184        110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS  168 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence            4667778888888999999999999988777766665   5567899999999999875

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.00  E-value=5.4e-10  Score=89.18  Aligned_cols=43  Identities=26%  Similarity=0.360  Sum_probs=39.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccchhhhh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLR   55 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~~~~~~   55 (290)
                      ..+|+|||+|++||+||+.|.+.++||+||.+..+|++...+.
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv~   50 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTVA   50 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccceee
Confidence            5899999999999999999999999999999999998876653

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.00  E-value=3.8e-09  Score=89.96  Aligned_cols=56  Identities=11%  Similarity=0.051  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+.+ .|++++.+++++++..+++++.+.+.+|+++.+|.||.|.|...
T Consensus       106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            678888888888 59999999999999877777888888888899999999999875

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.99  E-value=1.4e-09  Score=91.59  Aligned_cols=57  Identities=23%  Similarity=0.260  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc--C-CCc--EEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--S-TGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~--~-~g~--~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+++.|++++.++.+..++.++++..+..  . +|+  ++++|.||-|-|.++.
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~  173 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK  173 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred             HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence            6778888888999999999999998887777644433  2 343  6899999999998864

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05868 hypothetical protein; Validated

Probab=98.99  E-value=3.4e-09  Score=89.67  Aligned_cols=57  Identities=7%  Similarity=-0.095  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+ ..|+++++++.++.++.+++++.+.+.+|+++.+|.||-|-|.++..
T Consensus       106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~v  162 (372)
T PRK05868        106 DLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNV  162 (372)
T ss_pred             HHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchH
Confidence            3444443322 46899999999999987777788899999999999999999987644

>PRK07045 putative monooxygenase; Reviewed

Probab=98.99  E-value=6.5e-09  Score=88.70  Aligned_cols=58  Identities=9%  Similarity=0.012  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+.. .|++++++++++.++.++++  +.+.+.+|+++.+|.||.|.|.....
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~v  167 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMI  167 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHH
Confidence            456666776654 58999999999999876555  36778888899999999999987543

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.98  E-value=2.5e-09  Score=93.42  Aligned_cols=52  Identities=19%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .+.+.+.+.+++  .+++++++|+.++.+++++.+.+.+|+++.+|.||+++..
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~  278 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH  278 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence            455555555543  5799999999999888888888888888999999999864

>PRK08244 hypothetical protein; Provisional

Probab=98.97  E-value=7.3e-09  Score=91.11  Aligned_cols=57  Identities=12%  Similarity=0.039  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc--CCC-cEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--STG-DTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~--~~g-~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+++.|++++.++++++++.+++++.+.+  .+| +++.+|.+|.|.|..+.
T Consensus       101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244        101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence            5677788888888999999999999887777765544  345 47999999999998764

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.96  E-value=5.3e-09  Score=91.93  Aligned_cols=62  Identities=15%  Similarity=0.069  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC---Cc--EEeccEEEEccCCCCCchhhc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      ..+...+.+.+++.|++++.+++|+.+..+++.+.+.+.+   |+  ++.++.||.|+|.+. ..++.
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa-~~l~~  221 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV-KQFLD  221 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH-HHHHh
Confidence            3666777777889999999999999987766655555432   43  689999999999885 34433

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.96  E-value=6.5e-09  Score=91.41  Aligned_cols=62  Identities=13%  Similarity=-0.030  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC----cEEeccEEEEccCCCCCchhhc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      ..+...+...+++.|++++.+++|+++..+++.+.+.+.++    .++.++.||.|+|.+. ..+..
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa-~~l~~  220 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV-TDVIH  220 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH-HHHHh
Confidence            46777778888999999999999998887766566655443    2589999999999875 34433

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.96  E-value=6.5e-09  Score=88.18  Aligned_cols=57  Identities=5%  Similarity=0.001  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+.+.+ ++++.++.++++..+++++.+.+.++ ++.+|.||.|-|..+..
T Consensus       105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~v  162 (374)
T PRK06617        105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKV  162 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchh
Confidence            67888888887764 99999999999887777777888766 89999999999987644

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.95  E-value=1.8e-08  Score=89.47  Aligned_cols=58  Identities=21%  Similarity=0.185  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcC--CC--cEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+.+. |++++.++++++++.+++++.+.+.  +|  +++.+|.||-|.|..+..
T Consensus       114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~v  176 (538)
T PRK06183        114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFV  176 (538)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhH
Confidence            5667777777764 9999999999999888887776654  56  379999999999987643

>PRK06185 hypothetical protein; Provisional

Probab=98.95  E-value=2.2e-08  Score=86.03  Aligned_cols=56  Identities=18%  Similarity=0.089  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCce---eEEcCCCc-EEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD---TYLTSTGD-TINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~---~v~~~~g~-~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+.+ .|++++.++.++++..+++.+   .+...+|+ ++.+|.||.|.|...
T Consensus       109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S  169 (407)
T PRK06185        109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS  169 (407)
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence            456666666665 489999999999887766653   34455664 799999999999875

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.94  E-value=6.3e-09  Score=88.78  Aligned_cols=56  Identities=18%  Similarity=-0.031  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.| ..+..++.+..++.+.+...+.+.+|+ +.+|.||+|+|.+.
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~  212 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA  212 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence            378888999999999 555668888777664244777888886 99999999999874

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.93  E-value=1.6e-09  Score=96.22  Aligned_cols=106  Identities=14%  Similarity=0.071  Sum_probs=65.2

Q ss_pred             cCCeEEEEcCchhHHHHHHH-------HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeeccc
Q 022896          135 SARSILIVGGGPTGVELAGE-------IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  207 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~-------l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~  207 (290)
                      .++.++++|++..+++.+..       +..  .+.++++....+.........+...+.+.+++.|++++.++.++++..
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~  236 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALK--VGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV  236 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHH--HHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE
Confidence            35567888888887776643       111  122333222222222334556788888889999999999999999887


Q ss_pred             CCCc-eeEEc-CCCc--EEecc-EEEEccC-CCCCchhhcc
Q 022896          208 SEGS-DTYLT-STGD--TINAD-CHFLCTG-KPVGSDWLKD  242 (290)
Q Consensus       208 ~~~~-~~v~~-~~g~--~~~~d-~vv~a~G-~~~~~~~l~~  242 (290)
                      +++. ..+.. .+++  .+.++ .||+|+| +..|.+++..
T Consensus       237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence            6554 22322 2443  57785 5888775 6665555443

>PRK06996 hypothetical protein; Provisional

Probab=98.93  E-value=2.1e-08  Score=85.79  Aligned_cols=54  Identities=11%  Similarity=-0.035  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC---cEEeccEEEEccCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGK  233 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~  233 (290)
                      .+.+.+.+.+++.|++++.+++++.++.+++++.+.+.++   +++.+|.||-|.|.
T Consensus       116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            6788888889999999999999988887777777877654   58999999999995

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.93  E-value=3.2e-08  Score=84.93  Aligned_cols=57  Identities=12%  Similarity=0.030  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+.+ .|++++.+++++.++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus       112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~  169 (405)
T PRK08850        112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW  169 (405)
T ss_pred             HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence            344556666655 479999999999998777778888889999999999999998653

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.92  E-value=2.3e-08  Score=82.18  Aligned_cols=101  Identities=20%  Similarity=0.250  Sum_probs=80.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---c--------cccC-----ChhHHHHHHHHHHhCCcEEEeCce
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~-----~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      +++|||+|+.|+.+|..|..  .+.+++++++.+.   +        .+.+     ..++...+.+.+++.|++++. +.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~   78 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EE   78 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EE
Confidence            68999999999999999986  4889999997641   0        0111     246677888888999999998 88


Q ss_pred             EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      +..++.+++.+.+.+.++.++.+|.+|+|+|.+|+.+.++
T Consensus        79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~  118 (300)
T TIGR01292        79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP  118 (300)
T ss_pred             EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC
Confidence            8888877777778877888999999999999988654333

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.92  E-value=1.4e-08  Score=86.86  Aligned_cols=57  Identities=18%  Similarity=0.170  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+.+ .|++++.++.++++..+++++.+.+.+|.++.+|.||.|.|.++.
T Consensus       113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        113 DVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA  170 (395)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence            345566666655 589999999999888777778888888888999999999998753

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.92  E-value=1.1e-09  Score=68.26  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=32.2

Q ss_pred             EEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896           18 VIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL   54 (290)
Q Consensus        18 IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~   54 (290)
                      |||||++||++|++|++ |.+|+|+|+++.+|+.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~   38 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF   38 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence            89999999999999976 99999999999998776543

...

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.92  E-value=7.5e-10  Score=98.77  Aligned_cols=58  Identities=14%  Similarity=-0.074  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeE--EcCCCc-EEec-cEEEEccCCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTY--LTSTGD-TINA-DCHFLCTGKPVG  236 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v--~~~~g~-~~~~-d~vv~a~G~~~~  236 (290)
                      ..+...+.+.+++.|++++.++.++++..+++. ..+  ...++. .+.+ +.||+|+|-..+
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            357788889999999999999999998765544 223  333443 5788 999999987653

>PRK06753 hypothetical protein; Provisional

Probab=98.91  E-value=5.1e-09  Score=88.88  Aligned_cols=55  Identities=13%  Similarity=0.039  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+.  +.++++++++++++.+++++.+++.+|+++.+|.||.|.|.++.
T Consensus        99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             HHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            34444444433  46789999999998877788888889999999999999997654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.91  E-value=1.6e-08  Score=88.31  Aligned_cols=41  Identities=20%  Similarity=0.147  Sum_probs=36.1

Q ss_pred             cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          194 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       194 i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      .+++.+++|+.++.+++++.+++.+|+++.+|.||++++..
T Consensus       238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~  278 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK  278 (462)
T ss_pred             CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence            68999999999998888888888888889999999998753

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.91  E-value=6e-09  Score=88.31  Aligned_cols=60  Identities=20%  Similarity=0.176  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      .+.+.+.+.+...   ++.+++|+.+..+..+..+.+.+|+++.+|.||+++..+-...++.+
T Consensus       216 ~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~  275 (444)
T COG1232         216 SLIEALAEKLEAK---IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD  275 (444)
T ss_pred             HHHHHHHHHhhhc---eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC
Confidence            4555555555544   99999999999987778888889999999999999876554455555

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.91  E-value=2.6e-08  Score=85.00  Aligned_cols=55  Identities=11%  Similarity=-0.055  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccC-CCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+.+.|++++ ...+..+..+ ++...+.+.+|+++.++.||.|+|..+
T Consensus        86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            677778888888899987 4567777665 445777778888899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.91  E-value=1.8e-08  Score=85.88  Aligned_cols=55  Identities=15%  Similarity=0.048  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC------C--cEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST------G--DTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~------g--~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+.+.|++++.+ .++++..+++.+.+...+      |  .++.+|.||.|.|..+
T Consensus        93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence            57777888888889999765 587787777766665442      2  3789999999999754

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN02697 lycopene epsilon cyclase

Probab=98.90  E-value=2.2e-08  Score=87.53  Aligned_cols=55  Identities=11%  Similarity=0.083  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+.+.|+++ .++.|+.+..++++.. +...+|.++.++.||.|+|..+
T Consensus       193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            67777888888889998 5678888877666644 3456778899999999999876

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.89  E-value=2.5e-08  Score=85.21  Aligned_cols=58  Identities=9%  Similarity=-0.021  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeeccc-CCCceeEEc-CCCc--EEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLT-STGD--TINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~-~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+...+.|+++++++.+++++. +++...+.. .+|+  ++.+|.||-|-|.....
T Consensus       104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~v  165 (392)
T PRK08243        104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVS  165 (392)
T ss_pred             HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCch
Confidence            4455566666778999999999987765 455555555 4564  68999999999987643

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.89  E-value=4.4e-08  Score=82.96  Aligned_cols=55  Identities=15%  Similarity=0.056  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+...| .++.+..|++++..++...+.+.+|+++.++.||-|.|..+
T Consensus        88 ~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   88 DFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence            56666777777444 45677899999888887888899999999999999999654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.89  E-value=2.4e-08  Score=88.11  Aligned_cols=55  Identities=11%  Similarity=0.042  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      .+.+.+.+.+++.|++++.++.|+++..+++. +.|.+.+|+++.+|.||++++..
T Consensus       220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            67888999999999999999999999877655 57788888889999999998864

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.88  E-value=1.3e-09  Score=81.56  Aligned_cols=38  Identities=24%  Similarity=0.317  Sum_probs=34.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      ...||+||||||+||+||++|++ |.+|+|||++-.+|+
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG   67 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG   67 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence            36899999999999999999986 999999999987764

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.87  E-value=2.9e-08  Score=82.69  Aligned_cols=45  Identities=24%  Similarity=0.379  Sum_probs=39.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA   56 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~   56 (290)
                      ...||+|||||.+||++|++|++ |++|+|+|.++.+|+.....+.
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence            46999999999999999999988 9999999999998876554443

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.85  E-value=3.6e-08  Score=84.45  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEc---CCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+.+.+.+.+.+ .++++++++++++++.+++++.+++   .+++++++|.||-|-|..+..
T Consensus       108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~v  169 (400)
T PRK06475        108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSML  169 (400)
T ss_pred             HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence            577777777765 4899999999999987777766654   344579999999999987543

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.85  E-value=3.6e-08  Score=86.73  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=47.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc---eeEEcCCCc--EEeccEEEEccC-CCCCchhhcc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTGD--TINADCHFLCTG-KPVGSDWLKD  242 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~d~vv~a~G-~~~~~~~l~~  242 (290)
                      ..+...+.+.+++.|++++.++.++++..+++.   +.+...+++  ++.++.||+|+| +..+.+++..
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            357778888899999999999999999765553   333334433  688999999998 6666555544

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.85  E-value=4.5e-08  Score=84.76  Aligned_cols=58  Identities=10%  Similarity=0.029  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHhCC---cEEEeCceEeecccC-------CCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKK---VDVKLGERVNLDSVS-------EGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~g---i~~~~~~~v~~i~~~-------~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+...+.+.+++.+   ++++.++++++++.+       ++.+++.+.+|+++.+|.+|-|-|..+..
T Consensus       118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v  185 (437)
T TIGR01989       118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV  185 (437)
T ss_pred             HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence            56666777777764   999999999888642       34578888899999999999999987644

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.84  E-value=6.9e-08  Score=86.80  Aligned_cols=64  Identities=14%  Similarity=-0.090  Sum_probs=47.1

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCC--Cc-eeEEc---CCCc--EEeccEEEEccCCCCCchhhcc
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~--~~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      +..+...+.+.+++.|++++.++.|+++..++  +. ..+..   .+++  ++.+|.||+|+|.+. ..++..
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws-~~l~~~  302 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC-DEVRKM  302 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH-HHHHHh
Confidence            44788889999999999999999999887653  33 23332   2343  689999999999885 344443

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.84  E-value=4.7e-08  Score=87.10  Aligned_cols=58  Identities=17%  Similarity=0.176  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEE--cCCCc-EEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYL--TSTGD-TINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~--~~~g~-~~~~d~vv~a~G~~~~~  237 (290)
                      .+...+.+.+.+. +++++.++++++++.+++++.+.  ..+|+ ++.+|.||.|.|..+..
T Consensus       126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~v  187 (547)
T PRK08132        126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPL  187 (547)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHH
Confidence            4566677777665 79999999999998877775544  34554 68999999999987643

>TIGR02730 carot_isom carotene isomerase

Probab=98.84  E-value=2e-08  Score=88.31  Aligned_cols=57  Identities=12%  Similarity=0.020  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+.+.+.+.+++.|++++.+++|+++..+++. ..+.+.+|+++.+|.||++++.+.
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~  286 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWD  286 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence            367888999999999999999999999876554 667778888899999999998653

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.84  E-value=4e-08  Score=84.70  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=34.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEIT   50 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~   50 (290)
                      ..+||||||+|.|||+||..+++|.+|+|+||.+..++.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCCc
Confidence            358999999999999999999779999999999876544

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.82  E-value=3e-09  Score=80.11  Aligned_cols=38  Identities=26%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      ..+||+||||||+||+||++|++ |++|++||++..+|+
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG   54 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG   54 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            46999999999999999999987 999999999987764

>PRK11445 putative oxidoreductase; Provisional

Probab=98.81  E-value=5.3e-08  Score=81.90  Aligned_cols=55  Identities=15%  Similarity=-0.006  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc-CCCc--EEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+. .+.|++++.++.++.++.+++++.+.. .+|+  ++.+|.||.|.|..+
T Consensus       100 ~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445        100 KFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             HHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence            344444443 456899999999999887777766664 4564  689999999999864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.79  E-value=1.1e-08  Score=88.68  Aligned_cols=63  Identities=13%  Similarity=0.059  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCC-c---eeEEcCCCc--EEeccEEEEccCC-CCCchhhc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S---DTYLTSTGD--TINADCHFLCTGK-PVGSDWLK  241 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~---~~v~~~~g~--~~~~d~vv~a~G~-~~~~~~l~  241 (290)
                      ..+...+.+.+++.|++++.++.++++..+++ .   +.+...+++  .+.++.||+|+|. ..|.+++.
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence            46788888899999999999999999987543 2   333334453  4789999999994 44444443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.79  E-value=9.8e-09  Score=85.43  Aligned_cols=97  Identities=25%  Similarity=0.300  Sum_probs=56.9

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEE-cCCCCcccc------------------------hhhhhh--hc-----CCc
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLI-DPKEYFEIT------------------------WASLRA--MV-----EPS   61 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vi-e~~~~~~~~------------------------~~~~~~--~~-----~~~   61 (290)
                      ||+|||||.||+.||+.+++ |.+|+|+ .+.+.++..                        ......  .+     +..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            89999999999999999987 9999999 333322210                        000000  00     000


Q ss_pred             --ccc-------------ccccccccccccceEEeeeeeeeecc-----eEEecCceEEeccEEEEccCC
Q 022896           62 --FGK-------------RSVINHTDYLVNGRIVASPAINITEN-----EVLTAEGRRVVYDYLVIATGH  111 (290)
Q Consensus        62 --~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~~-----~v~~~~~~~~~~~~vi~a~G~  111 (290)
                        ...             ..+....+-..+..++++.|+.+..+     -|.+.+|..+.++.+|+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence              000             00000011122467788899888764     378889999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.79  E-value=1.8e-08  Score=88.50  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++||+|||||+||+.||..+++ |.+|+++|++.
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            36999999999999999999987 99999999983

>PLN02612 phytoene desaturase

Probab=98.79  E-value=5.8e-08  Score=86.46  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .+.+.+.+.+++.|.++++++.|++|+.++++  ..+.+.+|+++++|.||++++.
T Consensus       309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            57788888888899999999999999876555  4467778889999999999864

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.78  E-value=5.3e-08  Score=85.15  Aligned_cols=55  Identities=15%  Similarity=0.142  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEc--CCC--cEEeccEEEEccCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT--STG--DTINADCHFLCTGK  233 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~--~~g--~~~~~d~vv~a~G~  233 (290)
                      ..+...+.+.+++.|++++.++.++++..+++. ..+..  .++  ..+.++.||+|+|-
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            367778888899999999999999998876554 23332  333  36789999999984

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.78  E-value=8e-08  Score=83.74  Aligned_cols=56  Identities=16%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCc-----EEeccEEEEccCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGD-----TINADCHFLCTGKP  234 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~-----~~~~d~vv~a~G~~  234 (290)
                      ..+.+.+.+.+++.|.+++.++.|++|+.++++  ..+.+.+|+     ++.+|.||++++..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~  275 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD  275 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence            357788888898999999999999999754443  345555554     78999999998754

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.78  E-value=7.6e-08  Score=80.62  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCc-eeEEc---CCC--cEEeccEEEEccCCCCCchhhcccccccccCCC
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTH  252 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~-~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~  252 (290)
                      .+++.+.+.+.+. |++++++++|++++..+++ +.+..   .+|  .++.+++|++.+|-. ..+++...+++-.....
T Consensus       182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~-aL~LLqksgi~e~~gyg  260 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG-ALPLLQKSGIPEGKGYG  260 (488)
T ss_pred             HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH-hHHHHHHcCChhhcccC
Confidence            6777777777777 9999999999999887666 66654   223  479999999999987 48899988875322333


Q ss_pred             CcEEecCCccc
Q 022896          253 GMLMVDENLRV  263 (290)
Q Consensus       253 g~~~v~~~~~~  263 (290)
                      |++.--.++.+
T Consensus       261 gfPVsG~fl~~  271 (488)
T PF06039_consen  261 GFPVSGQFLRC  271 (488)
T ss_pred             CCcccceEEec
Confidence            44333344544

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.74  E-value=3.7e-08  Score=83.15  Aligned_cols=99  Identities=21%  Similarity=0.355  Sum_probs=62.4

Q ss_pred             cEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCccc--chhhhhhhcC------------Cccccc------------
Q 022896           15 RVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEI--TWASLRAMVE------------PSFGKR------------   65 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~--~~~~~~~~~~------------~~~~~~------------   65 (290)
                      ||+|||||+||+++|.+|++   |.+|+|+|+.+..++  .|........            ..+...            
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            79999999999999999963   899999999885543  1221111110            000000            


Q ss_pred             -cccc-----c----ccccccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCC
Q 022896           66 -SVIN-----H----TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD  113 (290)
Q Consensus        66 -~~~~-----~----~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~  113 (290)
                       .+..     +    .+.+....+....|..++++.+.+.+|.++.++.||-|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence             0000     0    0000111223567777777777778888999999999999774

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.74  E-value=3.6e-07  Score=73.22  Aligned_cols=208  Identities=17%  Similarity=0.175  Sum_probs=104.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-----CCcEEEEcCCCCcccchhhhhh-hcCCccccccccccc----cccccceEEee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHT----DYLVNGRIVAS   82 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-----g~~v~vie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~   82 (290)
                      +.||+|||||-.|.+.|+.|++     |.+|+|+|++..+......+.. .+...|.-...+++.    +++++..   .
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~---e  162 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAR---E  162 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHH---H
Confidence            6899999999999999999962     7999999999876433222221 111111111111110    1111110   0


Q ss_pred             eeeeeecceEEecCceEEeccEEEEccCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCC
Q 022896           83 PAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK  162 (290)
Q Consensus        83 ~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~  162 (290)
                      ....++...+   +-......++++|.-..       ...+.+..+...+.  +.++-        +--...|.++++..
T Consensus       163 hl~~~d~~~v---dl~f~P~GyL~LA~ee~-------ae~m~s~~kvQ~e~--GAk~e--------Lls~d~Lt~rfPwl  222 (509)
T KOG2853|consen  163 HLGILDSEQV---DLNFFPTGYLRLASEEE-------AEMMRSNSKVQNEL--GAKVE--------LLSPDELTKRFPWL  222 (509)
T ss_pred             hhccccCCCC---CcccCCCceEEEcchhh-------HHHHHHhHHHHHhh--cchhc--------ccCHHHHhhhCCcc
Confidence            0011111111   11234455777774211       22233333333232  22221        11334566666654


Q ss_pred             eE---EEEecCccccccCCh-hHHHHHHHHHHhCCcEEEeCceEeecccC----------CC----------ceeEEcCC
Q 022896          163 KV---TLVHKGSRLLEFIGP-KAGDKTRDWLISKKVDVKLGERVNLDSVS----------EG----------SDTYLTST  218 (290)
Q Consensus       163 ~v---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gi~~~~~~~v~~i~~~----------~~----------~~~v~~~~  218 (290)
                      ++   .+..-+-.--.-+++ .+...+++.....|+.+..+ +|..++++          ++          ++.+...+
T Consensus       223 ntegVaLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d  301 (509)
T KOG2853|consen  223 NTEGVALASLGVEKEGWFDPWALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMND  301 (509)
T ss_pred             cccceeeeecccccccccCHHHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCc
Confidence            43   222222111112444 47778888888899998866 44444433          22          13334444


Q ss_pred             C--cEEeccEEEEccCCCCCchhhccccc
Q 022896          219 G--DTINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       219 g--~~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      +  ..++++.+|.|.|.+. -......++
T Consensus       302 ~~~r~vk~al~V~aAGa~s-~QvArlAgI  329 (509)
T KOG2853|consen  302 ALARPVKFALCVNAAGAWS-GQVARLAGI  329 (509)
T ss_pred             hhcCceeEEEEEeccCccH-HHHHHHhcc
Confidence            4  3688999999999885 444444444

>PLN02487 zeta-carotene desaturase

Probab=98.73  E-value=1.2e-07  Score=83.79  Aligned_cols=63  Identities=8%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCC--c----eeEEc---CCCcEEeccEEEEccCCCCCchhhcc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--S----DTYLT---STGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~--~----~~v~~---~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      .+.+.+.+.++++|.+++.++.|+++..+.+  +    ..+.+   .+++.+.+|.||++++......++.+
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~  367 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPE  367 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCc
Confidence            5888899999999999999999999987632  2    33444   33457899999999997643344443

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.72  E-value=8.4e-08  Score=74.20  Aligned_cols=93  Identities=24%  Similarity=0.327  Sum_probs=66.5

Q ss_pred             EEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccccc------------------------C-----------------
Q 022896          140 LIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEF------------------------I-----------------  177 (290)
Q Consensus       140 ~iiG~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~~------------------------~-----------------  177 (290)
                      +|||+|++|+.+|..|.+.  +.+ +.++++.+.+...                        +                 
T Consensus         1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            6899999999999999874  666 9999976543110                        0                 


Q ss_pred             --ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          178 --GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       178 --~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                        .+++.+.+.+.+++.+++++.++.|++++.+++++.+.+.+++++.+|.||+|+|..
T Consensus        79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred             CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence              113445677888889999999999999999988899999998889999999999973

...

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.71  E-value=6.9e-08  Score=83.16  Aligned_cols=55  Identities=15%  Similarity=0.035  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+.  +..++.++.+++++.+++++.+.+.+|+++++|.||.|.|.+..
T Consensus       106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            44444444442  35677899999998777788888889989999999999998753

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.70  E-value=1.5e-07  Score=80.58  Aligned_cols=100  Identities=17%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---cCChhHH---------HHHHHHHHhCCcEEEeCceEe
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIGPKAG---------DKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      .++++|||+|+.|+.+|..|..+....+|+++.+.+...-   .+...+.         ..-.+.+.+.|++++.++.|+
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4689999999999999999987655668999987654311   1111110         001345677899999999997


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+..+.  ..+.+.+|+++.+|.+|+|||..|..
T Consensus        83 ~id~~~--~~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGRDT--RELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEECCC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence            776644  34566788899999999999998753

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.70  E-value=1.6e-08  Score=87.76  Aligned_cols=46  Identities=33%  Similarity=0.499  Sum_probs=39.7

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL   54 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~   54 (290)
                      .....++|+|||||+|||+||++|.. |++|+|+|.++..|+.....
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~   57 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTF   57 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEE
Confidence            34457899999999999999999986 99999999999998765443

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.69  E-value=1.2e-07  Score=82.72  Aligned_cols=56  Identities=14%  Similarity=0.119  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      ..+...+.+.+++.|++++.+ .++.+..+++.+ .+.. +++.+.++.||+|||-...
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG  176 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence            367888888899999999876 676665544443 3443 5668999999999997653

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.69  E-value=1.3e-07  Score=84.67  Aligned_cols=57  Identities=14%  Similarity=-0.031  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCC----Cc-eeE---EcCCCc--EEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE----GS-DTY---LTSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~----~~-~~v---~~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.||+++.++.++++..++    +. ..+   ...+|+  .+.++.||+|||-..
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            3577778888888999999999999887554    33 333   234554  578999999998644

>PRK07538 hypothetical protein; Provisional

Probab=98.69  E-value=2.5e-07  Score=79.66  Aligned_cols=57  Identities=12%  Similarity=-0.020  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHh-CC-cEEEeCceEeecccCCCceeEEcCCC-----cEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~-~g-i~~~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+.+ .| .+++.++++++++.+++++.+.+.++     +++.+|.||-|-|..+.
T Consensus       103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~  166 (413)
T PRK07538        103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA  166 (413)
T ss_pred             HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence            566666666654 35 57999999999887666544443332     48999999999998653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.68  E-value=2.1e-07  Score=80.95  Aligned_cols=103  Identities=21%  Similarity=0.196  Sum_probs=75.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------ccC-----C--hhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EFI-----G--PKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------~~~-----~--~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      ++++|||+|..|+.+|..|.+..+..+|+++++.+.+.      +.+     .  .++.....+.+++.|++++.++.++
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            37999999999999999998754567999999887531      111     1  1122233466788899999999998


Q ss_pred             ecccCCCceeEEc-CCCcEEe--ccEEEEccCCCCCchh
Q 022896          204 LDSVSEGSDTYLT-STGDTIN--ADCHFLCTGKPVGSDW  239 (290)
Q Consensus       204 ~i~~~~~~~~v~~-~~g~~~~--~d~vv~a~G~~~~~~~  239 (290)
                      .++.+++.+.+.. .+|+.+.  +|.+|+|||..|..+-
T Consensus        81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~  119 (444)
T PRK09564         81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP  119 (444)
T ss_pred             EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence            8887776666653 2355666  9999999999886543

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.68  E-value=7.2e-08  Score=83.06  Aligned_cols=64  Identities=16%  Similarity=0.041  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcC---CCc--EEeccEEEEccCCCCCchhhccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TINADCHFLCTGKPVGSDWLKDT  243 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~---~g~--~~~~d~vv~a~G~~~~~~~l~~~  243 (290)
                      ..+.-.......++|.+++..++|+.+..+++-+.|...   +|+  ++.++.||.|+|.+. ..++...
T Consensus       164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~~~~  232 (532)
T COG0578         164 ARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV-DEILEMA  232 (532)
T ss_pred             HHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHHHhh
Confidence            367777778888999999999999999888874445433   233  688999999999985 5666554

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.66  E-value=2.7e-07  Score=81.83  Aligned_cols=39  Identities=26%  Similarity=0.277  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      ...+||+|||+|.|||+||.++++ |.+|+|+||....++
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g   53 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG   53 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence            346999999999999999999986 999999999887553

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.63  E-value=2.9e-07  Score=72.99  Aligned_cols=65  Identities=8%  Similarity=-0.079  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-----eeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-----DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-----~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      .+...+-+.++..|-.+..+-++..+....+.     +.+....++++++..+|.|+|.+. .......++
T Consensus       197 ~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s-dr~aa~sgc  266 (453)
T KOG2665|consen  197 SVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS-DRCAALSGC  266 (453)
T ss_pred             HHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH-hHHHHHhCC
Confidence            45566667788999999999999888765553     445555567999999999999885 444444444

>PRK07236 hypothetical protein; Provisional

Probab=98.63  E-value=1.5e-07  Score=80.35  Aligned_cols=34  Identities=32%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+||+|||||++||++|..|++ |.+|+|+|+.+.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4899999999999999999986 999999999863

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.62  E-value=7.2e-08  Score=83.46  Aligned_cols=55  Identities=24%  Similarity=0.206  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.|.+...+.|++++.++ |..+..++++  ..+.+.+|+++++|.+|=|+|...
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            678889999999999999886 6556655555  567888899999999999999864

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=9.8e-07  Score=78.98  Aligned_cols=57  Identities=12%  Similarity=-0.032  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeE---EcCCCc--EEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTY---LTSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v---~~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.||+++.++.++++..+++. ..+   ...+|+  .+.++.||+|||-..
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            367777888888899999999999888765543 222   334564  588999999999753

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.61  E-value=3.3e-07  Score=82.48  Aligned_cols=39  Identities=23%  Similarity=0.128  Sum_probs=34.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      ..+||+|||+|.|||+||.++++ |.+|+|+||....++.
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~   88 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH   88 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence            35899999999999999999976 9999999998765543

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=3e-07  Score=82.48  Aligned_cols=56  Identities=11%  Similarity=0.003  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCC-Cc-eeEE---cCCCc--EEeccEEEEccCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS-DTYL---TSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~-~~-~~v~---~~~g~--~~~~d~vv~a~G~~  234 (290)
                      ..+...+.+.+++.||+++.++.++++..++ +. ..+.   ..+|+  .+.++.||+|||--
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  211 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY  211 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            3577778888888999999999999887654 32 3332   34664  67899999999854

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=9.6e-07  Score=79.12  Aligned_cols=55  Identities=13%  Similarity=0.070  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCc-eeE---EcCCCc--EEeccEEEEccCCC
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTY---LTSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~-~~v---~~~~g~--~~~~d~vv~a~G~~  234 (290)
                      .+...+.+.+.+ .||+++.++.++++..+++. ..+   ...+|+  .+.++.||+|||-.
T Consensus       138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~  199 (577)
T PRK06069        138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA  199 (577)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence            566777777765 69999999999888765554 222   334664  57899999999965

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.59  E-value=4.5e-08  Score=84.58  Aligned_cols=39  Identities=38%  Similarity=0.539  Sum_probs=34.4

Q ss_pred             hccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896            8 QSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus         8 ~~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++..+++||+||||||+|+++|+.|++ |++|+|+|+...
T Consensus        34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         34 KLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            355568999999999999999999986 999999999753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.58  E-value=8.8e-07  Score=78.29  Aligned_cols=101  Identities=18%  Similarity=0.261  Sum_probs=80.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--ccc------------ccCChhHHHHHHHHHHhCCcEEEeCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL------------EFIGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      ...+++|||+|+.|+.+|..+..  .+.+++++....  .+.            ....+++...+.+.+++.|++++.++
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~  288 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQ  288 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCC
Confidence            45789999999999999999986  588998886311  110            01234567778888899999999999


Q ss_pred             eEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          201 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .|+.+..+++...+.+.+|+.+.+|.+|+|+|..+..
T Consensus       289 ~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       289 RAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence            9988877766677777888889999999999987643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.58  E-value=3.1e-07  Score=77.32  Aligned_cols=32  Identities=38%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             cEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      ||+|||+|.|||++|..|.+.++|+|+.|.+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            89999999999999999999999999999874

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.57  E-value=3.3e-07  Score=67.59  Aligned_cols=34  Identities=38%  Similarity=0.645  Sum_probs=28.3

Q ss_pred             eEEeeeeeeeecc----eEEecCceEEeccEEEEccCC
Q 022896           78 RIVASPAINITEN----EVLTAEGRRVVYDYLVIATGH  111 (290)
Q Consensus        78 ~~~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~  111 (290)
                      .++...|+.+...    .+.+.+|..+.+|.||+|+|.
T Consensus       118 ~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  118 RHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             EEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            4567788888765    478889999999999999996

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.57  E-value=9.1e-07  Score=79.61  Aligned_cols=56  Identities=9%  Similarity=-0.029  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeeccc-CCCc-eeE---EcCCCc--EEeccEEEEccCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGS-DTY---LTSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~-~~~~-~~v---~~~~g~--~~~~d~vv~a~G~~  234 (290)
                      ..+...+.+.+++.|++++.++.++++.. +++. ..+   ...+|+  .+.++.||+|||--
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  228 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY  228 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence            36777888888889999999999998776 3433 333   234564  57899999999743

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.55  E-value=1.4e-06  Score=78.03  Aligned_cols=55  Identities=15%  Similarity=-0.076  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eE---EcCCCc--EEeccEEEEccCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~  234 (290)
                      .+...+.+.+++.|++++.++.++++..+++.+ .+   ...+|+  .+.++.||+|+|-.
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            566777787888899999999999887665542 22   234564  58899999999964

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.55  E-value=2.8e-06  Score=73.70  Aligned_cols=104  Identities=13%  Similarity=0.205  Sum_probs=76.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------  176 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------  176 (290)
                      ..++|+|||+|++|+-+|..+..  .+.+++++++.+.+...                                      
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m   86 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM   86 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence            45899999999999999999986  37788888865432110                                      


Q ss_pred             ----C------------------ChhHHHHHHHHHHhCCcE--EEeCceEeecccCCCceeEEcCCC--c--EEeccEEE
Q 022896          177 ----I------------------GPKAGDKTRDWLISKKVD--VKLGERVNLDSVSEGSDTYLTSTG--D--TINADCHF  228 (290)
Q Consensus       177 ----~------------------~~~~~~~~~~~~~~~gi~--~~~~~~v~~i~~~~~~~~v~~~~g--~--~~~~d~vv  228 (290)
                          +                  ..++.+.+.+.++..|++  ++++++|++++..++.+.+.+.++  .  +..+|.||
T Consensus        87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEE
Confidence                0                  024566677777888988  889999999988777777765432  2  46799999


Q ss_pred             EccCC--CCCchhh
Q 022896          229 LCTGK--PVGSDWL  240 (290)
Q Consensus       229 ~a~G~--~~~~~~l  240 (290)
                      +|+|.  .|+.+-+
T Consensus       167 vAtG~~~~P~~P~i  180 (461)
T PLN02172        167 VCNGHYTEPNVAHI  180 (461)
T ss_pred             EeccCCCCCcCCCC
Confidence            99994  4544433

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.55  E-value=6e-07  Score=76.00  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCccccc--cC---------ChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          138 SILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLE--FI---------GPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~-~~~~~v~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      +++|||+|..|+.+|..+..+ .+..+|+++++.+.+.-  .+         ..++...+.+.+++.|++++.+ .++.+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999988643 35789999998765321  00         1123334566677889999876 67666


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      +.+.+  .+.+.+|+++.+|.+|+|+|..+..+-+
T Consensus        80 d~~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~i  112 (364)
T TIGR03169        80 DPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSGV  112 (364)
T ss_pred             ecccC--EEEECCCCcccccEEEEccCCCCCCCCC
Confidence            65544  5667788889999999999998865443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.55  E-value=1.3e-06  Score=77.34  Aligned_cols=100  Identities=23%  Similarity=0.261  Sum_probs=79.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--cc------------cccCChhHHHHHHHHHHhCCcEEEeCce
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--RL------------LEFIGPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      ..+++|||+|+.|+.+|..+..  .+.++.++....  ..            .....+++.+.+.+.+++.|++++.++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~  288 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQR  288 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCE
Confidence            4689999999999999999986  488888886421  00            0012336778888889999999999999


Q ss_pred             EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      ++.+...++...+.+.+|+++.+|.+|+|+|..+..
T Consensus       289 V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        289 ASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            998887766677777888889999999999987643

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.54  E-value=1.3e-06  Score=78.74  Aligned_cols=37  Identities=27%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ..+||+|||||.|||+||..+++ |.+|+|+||....+
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            46899999999999999999976 99999999987544

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.54  E-value=1.4e-06  Score=78.13  Aligned_cols=40  Identities=18%  Similarity=0.183  Sum_probs=34.3

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      ....+||+|||||.|||+||.++++ |.+|+||||....++
T Consensus         9 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g   49 (591)
T PRK07057          9 PRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS   49 (591)
T ss_pred             ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            3456899999999999999999976 999999999865443

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.54  E-value=8.4e-07  Score=75.44  Aligned_cols=101  Identities=15%  Similarity=0.080  Sum_probs=73.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---ccC--------C-hhHHH-HHHHHHHhCCcEEEeCceEe
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFI--------G-PKAGD-KTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~---~~~--------~-~~~~~-~~~~~~~~~gi~~~~~~~v~  203 (290)
                      ++++|||+|..|+.+|..+.+..+..+++++.+.+...   +.+        . .++.. ...+.+++.|++++.++.|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            58999999999999999998766778999998766421   111        0 01111 13355677899999999998


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      .++.+..  .+.+ ++..+.+|.+|+|||..|..+-+
T Consensus        83 ~id~~~~--~v~~-~~~~~~yd~LVlATG~~~~~p~i  116 (377)
T PRK04965         83 DIDAEAQ--VVKS-QGNQWQYDKLVLATGASAFVPPI  116 (377)
T ss_pred             EEECCCC--EEEE-CCeEEeCCEEEECCCCCCCCCCC
Confidence            8876544  3333 56689999999999998865433

>PRK07208 hypothetical protein; Provisional

Probab=98.53  E-value=8e-08  Score=84.38  Aligned_cols=55  Identities=15%  Similarity=0.035  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCce--eEE--cCCCc--EEeccEEEEccCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD--TYL--TSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~--~v~--~~~g~--~~~~d~vv~a~G~~  234 (290)
                      .+.+.+.+.+++.|++++.+++|+++..++++.  .+.  ..+|+  ++.+|.||++++..
T Consensus       219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence            677888899999999999999999998877652  222  23453  58899999998754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.53  E-value=1.1e-06  Score=76.12  Aligned_cols=102  Identities=18%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------ccCC----hhHHHHH----HHHHHhCCcEEEeCceE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EFIG----PKAGDKT----RDWLISKKVDVKLGERV  202 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------~~~~----~~~~~~~----~~~~~~~gi~~~~~~~v  202 (290)
                      ++++|||+|..|+.+|..|++..++.+|+++++.+.+.      +.+.    ......+    .+..++.|++++.++.|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            48999999999999999998765678999999886432      1100    0011111    23335679999999999


Q ss_pred             eecccCCCceeEEcCC-Cc--EEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLTST-GD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~-g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.+++.+.+...+ ++  ++.+|.+|+|||..|+.+
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~  120 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL  120 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence            9888877666665432 22  468999999999998643

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.53  E-value=4.9e-07  Score=80.88  Aligned_cols=56  Identities=13%  Similarity=-0.003  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEE---cCCCc--EEeccEEEEccCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYL---TSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~---~~~g~--~~~~d~vv~a~G~~  234 (290)
                      ..+...+.+.+.+.|++++.++.++++..+ ++. ..+.   ..+|+  .+.++.||+|||--
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  205 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA  205 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence            357777777778889999999999888764 333 3332   34564  57899999999854

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.50  E-value=8.3e-07  Score=82.29  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=75.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhC--CCCeEEEEecCcccc------c-cCC----hhHHHHHHHHHHhCCcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDF--PEKKVTLVHKGSRLL------E-FIG----PKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~--~~~~v~~~~~~~~~~------~-~~~----~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      .++++|||+|..|+.+|..|..+.  .+.+|+++.+.+.+.      + .+.    .++.....+++++.||+++.++.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            358999999999999999987542  357899998876642      0 011    122222356678899999999998


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      +.+..+  ...+.+.+|+++.||.+|+|||..|..+-++
T Consensus        83 ~~Id~~--~~~V~~~~G~~i~yD~LVIATGs~p~~p~ip  119 (847)
T PRK14989         83 ITINRQ--EKVIHSSAGRTVFYDKLIMATGSYPWIPPIK  119 (847)
T ss_pred             EEEeCC--CcEEEECCCcEEECCEEEECCCCCcCCCCCC
Confidence            766553  3456677888899999999999988654443

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.47  E-value=2.1e-06  Score=76.39  Aligned_cols=56  Identities=18%  Similarity=0.155  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEE---cCCCc--EEeccEEEEccCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYL---TSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~---~~~g~--~~~~d~vv~a~G~~  234 (290)
                      ..+...+.+.+++.||+++.++.++++..++++  ..+.   ..+|+  .+.++.||+|||-.
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            467777888888899999999999988765543  2222   24564  58899999999964

>TIGR00551 nadB L-aspartate oxidase

Probab=98.45  E-value=1.2e-06  Score=76.97  Aligned_cols=57  Identities=16%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEcCC-C--cEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTST-G--DTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~~~-g--~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++ .||+++.++.++++..+++.+ .+...+ +  ..+.++.||+|+|-..
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            3677778888887 699999999999887665542 233222 3  3689999999999754

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN02268 probable polyamine oxidase

Probab=98.43  E-value=2.1e-07  Score=80.76  Aligned_cols=41  Identities=20%  Similarity=0.196  Sum_probs=36.8

Q ss_pred             CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          193 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       193 gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      +++++.+++|+++..+++++.+++.+|+++.+|.||+|++.
T Consensus       210 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        210 GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence            67899999999999888888888888888999999999864

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.43  E-value=8.1e-07  Score=78.17  Aligned_cols=32  Identities=34%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +||+|||||++|+.+|..+++ |.+|+|+|++.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            699999999999999999976 99999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.43  E-value=2.5e-07  Score=71.76  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=33.9

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~   51 (290)
                      .+|+|||+|++|++||+.|+. |.+|+||||+.-.|+..
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRl   40 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRL   40 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccch
Confidence            479999999999999999986 99999999999776543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.42  E-value=2.9e-06  Score=73.22  Aligned_cols=101  Identities=11%  Similarity=0.036  Sum_probs=72.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--C---------ChhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--I---------GPKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      ..++++|||+|..|+.+|..|..  ...+|+++++.+.+.-.  +         .......+.+.++..+++++. ..|+
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~   85 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVY   85 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEE
Confidence            45799999999999999988863  46789999987764210  0         112333355666777888875 4787


Q ss_pred             ecccCCCceeEEc--------CCCcEEeccEEEEccCCCCCch
Q 022896          204 LDSVSEGSDTYLT--------STGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       204 ~i~~~~~~~~v~~--------~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      .++.+++.+.+..        .+|.+++||.+|+|+|..+..+
T Consensus        86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~  128 (424)
T PTZ00318         86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF  128 (424)
T ss_pred             EEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence            7877766655521        4566899999999999987543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=2.5e-07  Score=78.58  Aligned_cols=41  Identities=34%  Similarity=0.383  Sum_probs=36.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL   54 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~   54 (290)
                      ++|+|+|||+|||+||++|+. |++|+|+|+++.+|+-....
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~   42 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW   42 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence            579999999999999999986 99999999999998665443

>PLN02576 protoporphyrinogen oxidase

Probab=98.40  E-value=3.1e-07  Score=81.06  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=36.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcccchhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~~~~~~   53 (290)
                      .++||+|||||++||+||++|++  |++|+|+|+++.+|+....
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t   54 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS   54 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence            46899999999999999999974  8999999999998876443

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.40  E-value=3e-07  Score=79.33  Aligned_cols=36  Identities=36%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      ||||||||++|++||+.+++ |.+|+|+|+.+.+|+.
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~   37 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGM   37 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCc
Confidence            89999999999999999987 9999999999987754

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.39  E-value=3e-07  Score=78.50  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+||+||||||+|+++|..|++ |++|+|||+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5899999999999999999976 999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.39  E-value=3.4e-07  Score=76.78  Aligned_cols=38  Identities=16%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      ++|++|||||++|+++|++|++ |.+|+|+|+++..|+.
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~   39 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN   39 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence            3799999999999999999986 9999999999888764

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.38  E-value=1.4e-06  Score=80.69  Aligned_cols=101  Identities=18%  Similarity=0.193  Sum_probs=74.4

Q ss_pred             EEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCccccc---cCC---------hhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          139 ILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGSRLLE---FIG---------PKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       139 v~iiG~g~~~~~~a~~l~~~~-~~~~v~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      ++|||+|..|+.+|..+.... .+.+|+++.+.+.+.-   .+.         .++.....+++++.|++++.++.|+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999987643 4569999998776420   011         112222356778899999999999877


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      +.+.  ..+.+.+|+++.||.+|+|||..|+.+-++
T Consensus        81 d~~~--k~V~~~~g~~~~yD~LVlATGs~p~~p~ip  114 (785)
T TIGR02374        81 DTDQ--KQVITDAGRTLSYDKLILATGSYPFILPIP  114 (785)
T ss_pred             ECCC--CEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence            6543  456777888999999999999988654433

>PLN02568 polyamine oxidase

Probab=98.37  E-value=3.6e-07  Score=80.64  Aligned_cols=51  Identities=16%  Similarity=0.126  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      +.+.+.+.+.  +-++++++.|+.|+.+++++.+.+.+|+++.+|.||+++..
T Consensus       244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence            4444444332  33689999999999888888898889988999999998764

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.36  E-value=2.1e-05  Score=63.03  Aligned_cols=105  Identities=16%  Similarity=0.137  Sum_probs=69.8

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCc--EEeccEEEEccCCCCCchhhcc------c--ccc
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGD--TINADCHFLCTGKPVGSDWLKD------T--ILK  246 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~------~--~~~  246 (290)
                      .-++.+.+...+++.|.-+..+.+|.......+. ..+-+.+..  .+.+|..|+|+|.--+..+..+      -  .+.
T Consensus       257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ld  336 (421)
T COG3075         257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLD  336 (421)
T ss_pred             hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcc
Confidence            3478888999999999999999999888777776 344455554  4679999999997543221111      0  011


Q ss_pred             c-------ccCC----------CCcEEecCCcccc----CCCCeEEeccccCccccc
Q 022896          247 D-------SLDT----------HGMLMVDENLRVK----GQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       247 ~-------~~~~----------~g~~~v~~~~~~~----~~~~vfa~Gd~~~~~~~~  282 (290)
                      +       +|..          .-.+.+|++++..    .+.|+|++|.+.+++++.
T Consensus       337 i~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi  393 (421)
T COG3075         337 ILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI  393 (421)
T ss_pred             cccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence            1       1111          1235566666652    257999999999998875

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.35  E-value=3.9e-07  Score=77.93  Aligned_cols=33  Identities=36%  Similarity=0.522  Sum_probs=30.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +||+||||||+|++||+.|++ |++|+|+|+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            589999999999999999986 999999999764

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.34  E-value=4.3e-07  Score=80.02  Aligned_cols=56  Identities=14%  Similarity=0.060  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCC-----cEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG-----DTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g-----~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+++.|.+++.+++|++|..+++. ..+...++     +++.+|.||+++....
T Consensus       233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~  294 (492)
T TIGR02733       233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS  294 (492)
T ss_pred             HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence            68888999999999999999999999887664 23333333     5789999999987643

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.33  E-value=3.5e-06  Score=79.07  Aligned_cols=92  Identities=20%  Similarity=0.042  Sum_probs=71.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++|+|||+|+.|+.+|..|..  .+.+|+++++.+.+...         ++.++.....+.+++.|++++.++.+.  
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG--  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG--  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec--
Confidence            57999999999999999999996  59999999987755432         234566667778889999999988662  


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCC-CC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKP-VG  236 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~-~~  236 (290)
                            ..+.+.+.....+|.|++|+|.+ |.
T Consensus       381 ------~dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        381 ------KTATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence                  23444555556799999999984 43

>PRK06126 hypothetical protein; Provisional

Probab=98.33  E-value=5.2e-07  Score=80.54  Aligned_cols=38  Identities=26%  Similarity=0.438  Sum_probs=33.5

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      |+...+||+||||||+||++|..|++ |++|+|||+.+.
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            34456999999999999999999986 999999999864

>PRK07236 hypothetical protein; Provisional

Probab=98.32  E-value=7e-06  Score=70.11  Aligned_cols=100  Identities=16%  Similarity=0.064  Sum_probs=73.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------CChhHHHHH------------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGPKAGDKT------------------------  185 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~------------------------  185 (290)
                      ..+|+|||+|.+|+.+|..|.+  .+.+|+++++.+.....      +.+...+.+                        
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   83 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD   83 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence            4789999999999999999997  58999999987643211      111111111                        


Q ss_pred             -------------------HHHHHh--CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          186 -------------------RDWLIS--KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       186 -------------------~~~~~~--~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                                         .+.+.+  .+++++.++.+++++.+++.+.+.+.+|+++.+|.||.|-|..+..
T Consensus        84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence                               111111  2457899999999988877888888999999999999999976543

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.30  E-value=3.3e-06  Score=67.38  Aligned_cols=47  Identities=23%  Similarity=0.267  Sum_probs=39.1

Q ss_pred             cEEEEcCChHHHHHHHHhc-cCCcEEEEcCCCCcccchhhhhhhcCCc
Q 022896           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS   61 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~   61 (290)
                      -|+|||+|.|||+++..+- ++..|+++|+....|++.....+.++..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA   58 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGA   58 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCC
Confidence            5999999999999999995 5777999999999998876666555443

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.30  E-value=2.9e-06  Score=72.85  Aligned_cols=97  Identities=19%  Similarity=0.272  Sum_probs=64.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeec
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITE   89 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~   89 (290)
                      ...+++|||||+.|+-.|..+++ |.+|||+|+.+.+-...       .++........+.+  ....+. ...+..+..
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~-------D~ei~~~~~~~l~~--~gv~i~~~~~v~~~~~  242 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE-------DPEISKELTKQLEK--GGVKILLNTKVTAVEK  242 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC-------CHHHHHHHHHHHHh--CCeEEEccceEEEEEe
Confidence            45889999999999999999987 99999999998754211       11111111111111  122232 344444443


Q ss_pred             c----eEEecCce--EEeccEEEEccCCCCCCCC
Q 022896           90 N----EVLTAEGR--RVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        90 ~----~v~~~~~~--~~~~~~vi~a~G~~~~~p~  117 (290)
                      .    .+.++++.  .+.+|.+++|+|-.|+.++
T Consensus       243 ~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~  276 (454)
T COG1249         243 KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG  276 (454)
T ss_pred             cCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence            2    35555555  6889999999999999886

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.29  E-value=2.3e-06  Score=66.02  Aligned_cols=103  Identities=26%  Similarity=0.319  Sum_probs=72.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---CCh-----------hHH--H--HHHHHHHhCCcEEEeC
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---IGP-----------KAG--D--KTRDWLISKKVDVKLG  199 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---~~~-----------~~~--~--~~~~~~~~~gi~~~~~  199 (290)
                      +++|||+|+.|+.+|..|..  .+.++.++.+.+.....   ...           ...  .  .+.+.+...+++++.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   78 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN   78 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred             CEEEEecHHHHHHHHHHHhc--CCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence            68999999999999999995  69999999766532110   000           011  1  3344457789999888


Q ss_pred             ceEeecccCCCc-----eeE---EcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896          200 ERVNLDSVSEGS-----DTY---LTSTGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       200 ~~v~~i~~~~~~-----~~v---~~~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      .++.++....+.     ..+   ...++.++.+|.+|+|+|..|+.+.++.
T Consensus        79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g  129 (201)
T PF07992_consen   79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG  129 (201)
T ss_dssp             HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred             cccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence            999888776663     122   3455668999999999998876554443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02661 Putative thiazole synthesis

Probab=98.28  E-value=8.3e-07  Score=72.99  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~   48 (290)
                      .++||+|||||++|+++|++|++  |++|+|||++...+
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G  129 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG  129 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence            46899999999999999999973  89999999987765

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.27  E-value=9.3e-06  Score=68.26  Aligned_cols=99  Identities=21%  Similarity=0.231  Sum_probs=72.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------CChhHHHHHHHHHHhCC-cEEEeCceEe
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTRDWLISKK-VDVKLGERVN  203 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g-i~~~~~~~v~  203 (290)
                      .++++|+|+|..|+.++..|....++.+++++++.+.++-.           ........+.+.+++.+ ++++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            57999999999999999999874224789999998765321           12234445777777555 888866 565


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      +|+.+.  .+|.+.++..+.||.+|+++|+.++.
T Consensus        82 ~ID~~~--k~V~~~~~~~i~YD~LVvalGs~~~~  113 (405)
T COG1252          82 DIDRDA--KKVTLADLGEISYDYLVVALGSETNY  113 (405)
T ss_pred             EEcccC--CEEEeCCCccccccEEEEecCCcCCc
Confidence            555544  45666666789999999999998865

>PLN02985 squalene monooxygenase

Probab=98.26  E-value=8.6e-07  Score=78.01  Aligned_cols=37  Identities=27%  Similarity=0.428  Sum_probs=32.9

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....+||+|||||++|+++|..|++ |++|+|+|+...
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            3457999999999999999999976 999999999753

>PTZ00367 squalene epoxidase; Provisional

Probab=98.24  E-value=8.3e-07  Score=78.68  Aligned_cols=34  Identities=26%  Similarity=0.542  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+||+|||||++|+++|..|++ |++|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46899999999999999999986 99999999976

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.24  E-value=2.3e-06  Score=74.08  Aligned_cols=64  Identities=20%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccC--CCc-eeEEcC-CCcEEeccEEEEccC-CCCCchhhcc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGS-DTYLTS-TGDTINADCHFLCTG-KPVGSDWLKD  242 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~--~~~-~~v~~~-~g~~~~~d~vv~a~G-~~~~~~~l~~  242 (290)
                      ..+...+.+.+++.|++++.++.++++..+  ++. ..+... ++..+.++.||+|+| +..|.+++..
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            357788888899999999999999998765  233 333332 335789999999999 4445555544

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=9.9e-07  Score=75.20  Aligned_cols=33  Identities=33%  Similarity=0.373  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+||+|||||-||+.||+..++ |.+++++--+-
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            4999999999999999999988 99999998665

>PRK10262 thioredoxin reductase; Provisional

Probab=98.24  E-value=2.3e-05  Score=65.16  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=69.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------cc-----CChhHHHHHHHHHHhCCcEEE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------EF-----IGPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------------~~-----~~~~~~~~~~~~~~~~gi~~~  197 (290)
                      ..++++|||+|+.|+.+|..+..+  +.++.+++..+ ..            +.     ..+.+.+.+.+.....+++++
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~--g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARA--NLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII   81 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence            467899999999999999999864  66777775321 11            01     112346667777777888887


Q ss_pred             eCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          198 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       198 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      .+ .++.++..++.+.+...++ .+.+|.||+|+|..|+.+
T Consensus        82 ~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~~  120 (321)
T PRK10262         82 FD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARYL  120 (321)
T ss_pred             ee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCCC
Confidence            65 4556666666566655444 689999999999987643

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.23  E-value=1e-06  Score=72.61  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-------cCCcEEEEcCCCCcccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-------FSADVTLIDPKEYFEIT   50 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-------~g~~v~vie~~~~~~~~   50 (290)
                      ..+||+|||||||||+||.+|+       +..+|.|+|+...+|++
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh  120 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH  120 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence            4699999999999999999984       26899999999976643

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.20  E-value=1.6e-06  Score=73.26  Aligned_cols=35  Identities=37%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      +.||+|||||++|+.+|+.|++ |.+|+|+|+.+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            4799999999999999999976 9999999986643

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.19  E-value=7.2e-06  Score=71.52  Aligned_cols=83  Identities=16%  Similarity=0.018  Sum_probs=60.8

Q ss_pred             CeEEEEecCccccccCCh-hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCchh
Q 022896          162 KKVTLVHKGSRLLEFIGP-KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDW  239 (290)
Q Consensus       162 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~  239 (290)
                      ....++.+.+..   .+| .+...+....++.|..++++|.|+++....++ ..|++.-| .+++..+|-|+|.+. .+.
T Consensus       172 v~g~Ly~P~DG~---~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA-r~V  246 (856)
T KOG2844|consen  172 VYGGLYSPGDGV---MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA-REV  246 (856)
T ss_pred             heeeeecCCCcc---cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH-HHh
Confidence            344566665543   333 57888999999999999999999999765554 67888888 699999999999996 344


Q ss_pred             hccccccccc
Q 022896          240 LKDTILKDSL  249 (290)
Q Consensus       240 l~~~~~~~~~  249 (290)
                      -...++.+++
T Consensus       247 g~m~gvkvPL  256 (856)
T KOG2844|consen  247 GAMAGVKVPL  256 (856)
T ss_pred             hhhcCCcccc
Confidence            4444444443

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.18  E-value=1.8e-05  Score=73.89  Aligned_cols=89  Identities=16%  Similarity=0.187  Sum_probs=66.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++|+|||+|++|+.+|..|+.  .+.+|+++++.+.+...         .+.+......+.+++.|++++.++.+ .+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di  614 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL  614 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE
Confidence            46899999999999999999986  48899999987654322         12344455557788889999999876 12


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .         ..+.....+|.||+|||.++
T Consensus       615 ~---------le~L~~~gYDaVILATGA~~  635 (1019)
T PRK09853        615 T---------VEQLKNEGYDYVVVAIGADK  635 (1019)
T ss_pred             E---------hhhheeccCCEEEECcCCCC
Confidence            2         12233456999999999875

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.18  E-value=1.4e-05  Score=70.44  Aligned_cols=142  Identities=16%  Similarity=0.165  Sum_probs=88.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC--------------------------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI--------------------------------------  177 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~--------------------------------------  177 (290)
                      .|+|+|||+|.+|+-.+..+.+  .+.+++++++.+.++...                                      
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p   78 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP   78 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred             CCEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence            3799999999999999999987  488999999776543210                                      


Q ss_pred             ----ChhHHHHHHHHHHhCCc--EEEeCceEeecccCC-----CceeEEcCC-Cc--EEeccEEEEccCCCC--Cchhhc
Q 022896          178 ----GPKAGDKTRDWLISKKV--DVKLGERVNLDSVSE-----GSDTYLTST-GD--TINADCHFLCTGKPV--GSDWLK  241 (290)
Q Consensus       178 ----~~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~-----~~~~v~~~~-g~--~~~~d~vv~a~G~~~--~~~~l~  241 (290)
                          ..++.+.++..++..++  .+.++++|++++..+     +++.+++.+ |+  +..+|.||+|+|...  +.|.-.
T Consensus        79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~  158 (531)
T PF00743_consen   79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS  158 (531)
T ss_dssp             SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred             CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence                12567778888888887  478999999887643     236666544 42  456999999999753  323200


Q ss_pred             ccccccccCCCCcEEecCCcccc---CCCCeEEeccccCccccc
Q 022896          242 DTILKDSLDTHGMLMVDENLRVK---GQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       242 ~~~~~~~~~~~g~~~v~~~~~~~---~~~~vfa~Gd~~~~~~~~  282 (290)
                      -.+++   .-.|.+.-...++..   ..++|-++|-..++.+.+
T Consensus       159 ~~G~e---~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa  199 (531)
T PF00743_consen  159 FPGLE---KFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIA  199 (531)
T ss_dssp             -CTGG---GHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHH
T ss_pred             hhhhh---cCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHH
Confidence            12221   124666655554432   367899999876555443

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.18  E-value=7.4e-06  Score=71.14  Aligned_cols=94  Identities=21%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~   88 (290)
                      ..+++|||||++|+.+|..|++ |.+|+++++.+.+.....       +....    ...+.+  .++.++ ...+..++
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~-------~~~~~----~~~~~l~~~GI~i~~~~~V~~i~  225 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE-------PSVAA----LAKQYMEEDGITFLLNAHTTEVK  225 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCC-------HHHHH----HHHHHHHHcCCEEEcCCEEEEEE
Confidence            4689999999999999999976 999999999876431110       00000    011111  134443 34556665


Q ss_pred             cc--e-EEecCceEEeccEEEEccCCCCCCCC
Q 022896           89 EN--E-VLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        89 ~~--~-v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      .+  . +...++.++.+|.+++|+|..|+.+.
T Consensus       226 ~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~  257 (438)
T PRK07251        226 NDGDQVLVVTEDETYRFDALLYATGRKPNTEP  257 (438)
T ss_pred             ecCCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence            33  2 23345678999999999999987654

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=2.9e-05  Score=63.44  Aligned_cols=98  Identities=21%  Similarity=0.312  Sum_probs=72.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcc---------------ccc-cCChhHHHHHHHHHHhCCcEEEeC
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSR---------------LLE-FIGPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      .+++|||+|+.|+.+|.++..  .+.+ +.++.....               +.. ...+++.+.+++..+..++++.. 
T Consensus         4 ~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-   80 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-   80 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-
Confidence            479999999999999999885  3555 444443211               111 13457888888888889999998 


Q ss_pred             ceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          200 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      ..+..++..++.+.+.+.+|+ ++++.||+|+|..+..+
T Consensus        81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            667666665557888888886 99999999999877554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.18  E-value=2.6e-05  Score=69.63  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=74.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------------c----CChhHHHHHHHHHHhCCcEEEeCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------------F----IGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~------------~----~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      .+++|||+|+.|+.+|..+..  .+.+|+++++.. +..            .    ....+...+.+.+++.|++++ ++
T Consensus         5 yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~   80 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QA   80 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-cc
Confidence            579999999999999999986  488999998753 211            0    112456677778888899986 66


Q ss_pred             eEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          201 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      .++.+..+++...+.+.++ .+.++.+|+|||.+|..+-+
T Consensus        81 ~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~i  119 (555)
T TIGR03143        81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGF  119 (555)
T ss_pred             EEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCC
Confidence            7877776555566666665 68999999999998865433

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.17  E-value=1.8e-06  Score=77.38  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=32.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+.+|+|||||++||++|..|++ |++|+|||+..
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            346999999999999999999986 99999999975

>PLN02676 polyamine oxidase

Probab=98.17  E-value=2.3e-06  Score=74.98  Aligned_cols=40  Identities=23%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          194 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       194 i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .+++++++|++|+.+++++.|.+.+|+++.+|.||++.+.
T Consensus       245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl  284 (487)
T PLN02676        245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL  284 (487)
T ss_pred             CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence            5799999999999988889999999989999999999874

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.17  E-value=2.1e-06  Score=68.39  Aligned_cols=40  Identities=13%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~   52 (290)
                      ++|++|||||.+|+.+|..|++ |.+|+|+||++..|++.-
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY   41 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY   41 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence            4799999999999999998876 999999999999997754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.16  E-value=7.9e-06  Score=71.50  Aligned_cols=96  Identities=19%  Similarity=0.233  Sum_probs=61.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||++|+.+|..|++ |.+|+++|+.+.+....       ...........+.+  .+++++ ...+..++..
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  240 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGE-------DAEVSKVVAKALKK--KGVKILTNTKVTAVEKN  240 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCC-------CHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence            4789999999999999999976 99999999987643211       01110000111111  133443 3355555432


Q ss_pred             ----eEEecCc--eEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTAEG--RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~~~--~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+...++  .++.+|.+++|+|..|+.+.
T Consensus       241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~  273 (461)
T TIGR01350       241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTEG  273 (461)
T ss_pred             CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence                2344455  47999999999999988763

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07121 hypothetical protein; Validated

Probab=98.16  E-value=2.2e-06  Score=75.50  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ..+||||||+|.+|++||+++++ |.+|+|+||....+
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~g   56 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAG   56 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            46999999999999999999986 99999999988644

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.16  E-value=2.1e-06  Score=74.14  Aligned_cols=35  Identities=37%  Similarity=0.424  Sum_probs=30.2

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      ||||||+|.|||+||++|++ |.+|+|+||....++
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            89999999999999999986 999999999997554

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.15  E-value=1.1e-05  Score=70.10  Aligned_cols=92  Identities=12%  Similarity=0.117  Sum_probs=66.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC----------ChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI----------GPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      .+++|+|||+|+.|+.+|..|..+..+.+|+++++.+.+....          .......+.+.++..+++++.+..+. 
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg-  103 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG-  103 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence            4689999999999999999998644689999999988654211          11334456666778899999887661 


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                             ..+...+- ...+|.||+|+|.++
T Consensus       104 -------~dvtl~~L-~~~yDaVIlAtGa~~  126 (491)
T PLN02852        104 -------RDVSLSEL-RDLYHVVVLAYGAES  126 (491)
T ss_pred             -------ccccHHHH-hhhCCEEEEecCCCC
Confidence                   11222222 246999999999875

>PRK07846 mycothione reductase; Reviewed

Probab=98.14  E-value=9.5e-06  Score=70.59  Aligned_cols=95  Identities=15%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||+.|+.+|..|++ |.+|+++++.+.+....       .++.. ..+..+.  ..++.+. ...+..++..
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~-------d~~~~-~~l~~l~--~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHL-------DDDIS-ERFTELA--SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccccc-------CHHHH-HHHHHHH--hcCeEEEeCCEEEEEEEc
Confidence            4789999999999999999976 99999999987543110       11110 0011111  0123332 4455555432


Q ss_pred             ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+.+.++.++.+|.+++|+|.+|+.+.
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~  266 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDL  266 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence                355567778999999999999987654

>PLN02529 lysine-specific histone demethylase 1

Probab=98.14  E-value=2.4e-06  Score=77.54  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=37.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~   53 (290)
                      ...+||+|||||++||+||+.|++ |++|+|+|+++.+|+....
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t  201 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT  201 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence            346899999999999999999976 9999999999988876443

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.13  E-value=7.2e-06  Score=71.01  Aligned_cols=95  Identities=23%  Similarity=0.248  Sum_probs=61.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||++|+.+|..|++ |.+|+++++.+.+....      ............+.+  .+++++ ...+..++.+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~------~~~~~~~~~~~~l~~--~gV~v~~~~~v~~i~~~  208 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL------FDEEMNQIVEEELKK--HEINLRLNEEVDSIEGE  208 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc------cCHHHHHHHHHHHHH--cCCEEEeCCEEEEEecC
Confidence            4789999999999999999976 89999999987642110      000000000001111  134443 4456666544


Q ss_pred             e--EEecCceEEeccEEEEccCCCCCC
Q 022896           91 E--VLTAEGRRVVYDYLVIATGHKDPV  115 (290)
Q Consensus        91 ~--v~~~~~~~~~~~~vi~a~G~~~~~  115 (290)
                      .  +.+.++.++.+|.+++|+|..|..
T Consensus       209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~  235 (427)
T TIGR03385       209 ERVKVFTSGGVYQADMVILATGIKPNS  235 (427)
T ss_pred             CCEEEEcCCCEEEeCEEEECCCccCCH
Confidence            2  355677889999999999999764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09897 hypothetical protein; Provisional

Probab=98.12  E-value=4.1e-05  Score=67.40  Aligned_cols=99  Identities=18%  Similarity=0.110  Sum_probs=69.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------------------------------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------------------------------------  176 (290)
                      ++|+|||+|++|+-++..|.......+|++++++..+...                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            5899999999999999999764344578888875443211                                        


Q ss_pred             --------------CCh---------hHHHHHHHHHHhCC--cEEEeCceEeecccCCCceeEEcCC-CcEEeccEEEEc
Q 022896          177 --------------IGP---------KAGDKTRDWLISKK--VDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLC  230 (290)
Q Consensus       177 --------------~~~---------~~~~~~~~~~~~~g--i~~~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a  230 (290)
                                    +.+         +....+.+.+.+.|  ++++.++.|+.++.+++++.+.+.+ |..+.+|.||+|
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA  161 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA  161 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence                          000         01111223334455  7888899999998877778887755 468999999999


Q ss_pred             cCCCC
Q 022896          231 TGKPV  235 (290)
Q Consensus       231 ~G~~~  235 (290)
                      +|..+
T Consensus       162 tGh~~  166 (534)
T PRK09897        162 TGHVW  166 (534)
T ss_pred             CCCCC
Confidence            99754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.12  E-value=1e-05  Score=70.82  Aligned_cols=96  Identities=22%  Similarity=0.302  Sum_probs=61.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||++|+.+|..|++ |.+|+++++.+.+....       .+.........+.+  .++.++ ...+..++..
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~l~~~l~~--~gV~i~~~~~V~~i~~~  242 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE-------DKEISKLAERALKK--RGIKIKTGAKAKKVEQT  242 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC-------CHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence            4789999999999999999975 99999999987643211       11111100001111  134443 3356666543


Q ss_pred             ----eEEecCc---eEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTAEG---RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~~~---~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+.+.++   .++.+|.+++|+|..|+...
T Consensus       243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~  276 (462)
T PRK06416        243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN  276 (462)
T ss_pred             CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence                2344444   67899999999999987653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.12  E-value=2.1e-05  Score=66.29  Aligned_cols=99  Identities=17%  Similarity=0.107  Sum_probs=67.8

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      ..+++++|||+|+.|+++|..+..  .+.+++++++.+.+...         ...+......+.+.+.|++++.++.+..
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~   93 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCC   93 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Confidence            357899999999999999999986  48899999988765421         1223333445567777999999998865


Q ss_pred             ccc----CCCceeEEc--CCCcEEeccEEEEccCCC
Q 022896          205 DSV----SEGSDTYLT--STGDTINADCHFLCTGKP  234 (290)
Q Consensus       205 i~~----~~~~~~v~~--~~g~~~~~d~vv~a~G~~  234 (290)
                      +..    +.+......  .++..+.+|.+|+|+|.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         94 GEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW  129 (352)
T ss_pred             ccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence            432    111111111  112247899999999984

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.12  E-value=2.9e-06  Score=76.67  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~   46 (290)
                      ..++||+||||||+||++|..|++  |.+|+|||+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            347899999999999999999975  899999999864

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.11  E-value=3.1e-06  Score=77.27  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=37.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL   54 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~   54 (290)
                      ....+|+|||||++||++|++|.+ |++|+|+|++..+|+.....
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~  280 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTM  280 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccccc
Confidence            346899999999999999999975 99999999999888664433

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.09  E-value=3.1e-06  Score=74.00  Aligned_cols=62  Identities=13%  Similarity=0.090  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCC--Cc----eeEEcCCC---cEEeccEEEEccCCCCCchhhc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS----DTYLTSTG---DTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~--~~----~~v~~~~g---~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      .+.+.+.+.++++|.+++.++.|++++.++  ++    ..+...+|   +++++|.||+|++......++.
T Consensus       220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~  290 (474)
T TIGR02732       220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLP  290 (474)
T ss_pred             hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCC
Confidence            466778889999999999999999998754  22    22234333   4689999999998654334443

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.09  E-value=4.3e-05  Score=64.05  Aligned_cols=93  Identities=29%  Similarity=0.364  Sum_probs=66.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-ccccc-----------------------------------------
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLE-----------------------------------------  175 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~-~~~~~-----------------------------------------  175 (290)
                      +|+|||+|..|+++|..+++  .+.+|.++... +.+..                                         
T Consensus         1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN   78 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN   78 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence            58999999999999999997  59999988422 11100                                         


Q ss_pred             ------------cCC-hhHHHHHHHHHHh-CCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCC
Q 022896          176 ------------FIG-PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       176 ------------~~~-~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                                  ..+ ..+...+++.++. .+++++ ...|+++..+++. ..|.+.+|+.+.+|.||+|||.
T Consensus        79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                        011 1456667777777 689997 4578888776665 7788999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.08  E-value=1.8e-05  Score=69.11  Aligned_cols=89  Identities=18%  Similarity=0.294  Sum_probs=67.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++++|||+|+.|+.+|..|..  .+.+|+++++.+.+...         ...++.....+.+++.|++++.++.+.. 
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-
Confidence            46899999999999999999986  48899999987765321         2445666777888899999999987621 


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                             .+...+. .+.+|.||+|+|..
T Consensus       216 -------~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHH-HhhCCEEEEccCCC
Confidence                   1122222 37899999999985

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.08  E-value=4.9e-05  Score=64.83  Aligned_cols=57  Identities=21%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCC--ceeE----EcCCCc--EE---eccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTY----LTSTGD--TI---NADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~--~~~v----~~~~g~--~~---~~d~vv~a~G~~~  235 (290)
                      +.+...+.+.|+++||++.+++.|+.+..+..  ...+    ...+|+  ++   +-|.|++..|+..
T Consensus       207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence            36788899999999999999999999987533  2211    224553  33   3799999988754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.07  E-value=5.1e-05  Score=66.06  Aligned_cols=97  Identities=22%  Similarity=0.265  Sum_probs=66.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------------C----C-------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------I----G-------  178 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------~----~-------  178 (290)
                      ..++|||+|+.|+.+|..+++  .+.+|.++++. .+...                           +    .       
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK   79 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHh--CCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence            468999999999999999987  58999999863 22110                           0    0       


Q ss_pred             ----------hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          179 ----------PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       179 ----------~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                                ..+...+++.+++.|++++.+ .++.+  +.+.+.+. .+|+++.+|.+|+|||.+|..+-+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i  147 (446)
T TIGR01424        80 KLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNL  147 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCC
Confidence                      012334555677789999877 44333  33344443 456789999999999999865433

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.07  E-value=3.9e-06  Score=70.45  Aligned_cols=44  Identities=25%  Similarity=0.394  Sum_probs=37.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhc-c-CCcEEEEcCCCCcccchhhh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASL   54 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~~~~~~~~   54 (290)
                      ....+|+|||||+|||+||.+|- . ..+++|+|..+..|+.....
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti   64 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTI   64 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeE
Confidence            34579999999999999999996 4 57899999999988765443

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.06  E-value=5.9e-05  Score=66.06  Aligned_cols=97  Identities=21%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------CCh-------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP-------------------------------  179 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------~~~-------------------------------  179 (290)
                      .+++|||+|+.|+.+|..+.+  .+.+|.++++.+.+...      .+.                               
T Consensus         6 yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA   83 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence            579999999999999999987  48899999986443211      000                               


Q ss_pred             h-----------HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCch
Q 022896          180 K-----------AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       180 ~-----------~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      +           +...+.+.+++.|++++.+...   ..+.+.+.+...+|+  ++.+|.+|+|||..|..+
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~---~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p  152 (461)
T PRK05249         84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRAR---FVDPHTVEVECPDGEVETLTADKIVIATGSRPYRP  152 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE---EecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence            0           0112334566789999877532   234455667666664  789999999999988643

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.06  E-value=4e-06  Score=74.10  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      .+||||||+| +||+||+++++ |.+|+||||....+
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            6899999999 99999999976 99999999987644

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.05  E-value=3.8e-06  Score=69.01  Aligned_cols=64  Identities=16%  Similarity=0.107  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhCCcEEEeCceEeecccC--CCc---eeEEcCCCc----EEeccEEEEccCCCCCchhhccccc
Q 022896          182 GDKTRDWLISKKVDVKLGERVNLDSVS--EGS---DTYLTSTGD----TINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       182 ~~~~~~~~~~~gi~~~~~~~v~~i~~~--~~~---~~v~~~~g~----~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      ...+...++..|+++++++.|+++..+  ++.   +.+...++.    .+.++.||+|.|.--.+.+|..+++
T Consensus       196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            444556565669999999999999554  333   334444554    4678999999997656677777766

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.05  E-value=2e-05  Score=68.61  Aligned_cols=91  Identities=19%  Similarity=0.163  Sum_probs=66.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++++|||+|+.|+.+|..|..  .+.+|+++++.+.+..         .++.++.....+.+++.|++++.++.+.  
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~--  207 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG--  207 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC--
Confidence            46799999999999999999986  4889999998765421         1344566666677888999999987551  


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCC-CCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGK-PVG  236 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~-~~~  236 (290)
                            ..+.+.+. ...+|.||+|+|. .|.
T Consensus       208 ------~~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       208 ------KTATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             ------CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                  11222222 3569999999997 454

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.05  E-value=5.4e-06  Score=73.73  Aligned_cols=37  Identities=30%  Similarity=0.326  Sum_probs=33.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~   48 (290)
                      ..+||+|||+|.|||+||.++++|.+|+|+||....+
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~g   44 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKT   44 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCC
Confidence            3689999999999999999998899999999987644

>PRK12831 putative oxidoreductase; Provisional

Probab=98.05  E-value=2.5e-05  Score=68.14  Aligned_cols=92  Identities=17%  Similarity=0.202  Sum_probs=66.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CCh-hHHHHHHHHHHhCCcEEEeCceEee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGP-KAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      .+++++|||+|+.|+.+|..+..  .+.+|+++++.+.+...         +.. .+.....+.+++.|++++.++.+..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC
Confidence            57899999999999999999997  48899999976543211         122 2555566788889999999986621


Q ss_pred             cccCCCceeEEcCCC-cEEeccEEEEccCC-CCC
Q 022896          205 DSVSEGSDTYLTSTG-DTINADCHFLCTGK-PVG  236 (290)
Q Consensus       205 i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~-~~~  236 (290)
                              .+...+. +.+.+|.||+|+|. .|.
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence                    1122222 24579999999998 454

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.04  E-value=6.1e-06  Score=53.35  Aligned_cols=34  Identities=44%  Similarity=0.638  Sum_probs=31.2

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      +++|||||+.|+-+|..|++ |.+|+|+++++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58999999999999999976 99999999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.04  E-value=5.1e-06  Score=74.24  Aligned_cols=37  Identities=30%  Similarity=0.347  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ..+||+|||+|.|||+||..+++ |.+|+|+||....+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~   41 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR   41 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            46899999999999999999976 99999999986533

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.04  E-value=5.1e-06  Score=74.09  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++||||||+|.+||+||.++++ |.+|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            36899999999999999999976 99999999998

>TIGR03452 mycothione_red mycothione reductase

Probab=98.04  E-value=2.1e-05  Score=68.45  Aligned_cols=95  Identities=16%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||+.|+.+|..|++ |.+|++|++.+.+....       .++... .+..+..  .++.+. ...+..+..+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~-------d~~~~~-~l~~~~~--~gI~i~~~~~V~~i~~~  238 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL-------DEDISD-RFTEIAK--KKWDIRLGRNVTAVEQD  238 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccccc-------CHHHHH-HHHHHHh--cCCEEEeCCEEEEEEEc
Confidence            4789999999999999999976 99999999987642110       111100 0111110  123332 3445555432


Q ss_pred             ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+.+.++.++.+|.+++|+|.+|+...
T Consensus       239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~  269 (452)
T TIGR03452       239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDL  269 (452)
T ss_pred             CCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence                345556778999999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.01  E-value=3.1e-05  Score=65.24  Aligned_cols=100  Identities=23%  Similarity=0.363  Sum_probs=76.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------cCChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      ..+.++|+|+|+.+.-++..+....+...++++.+...+..          .....+.....++.+++||+++.++.|+.
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~  152 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK  152 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence            46889999999988888888877656667787775543211          11234555667789999999999999977


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      ++...  .++.+.+|++++++.+++|||+.+.
T Consensus       153 ~D~~~--K~l~~~~Ge~~kys~LilATGs~~~  182 (478)
T KOG1336|consen  153 ADLAS--KTLVLGNGETLKYSKLIIATGSSAK  182 (478)
T ss_pred             eeccc--cEEEeCCCceeecceEEEeecCccc
Confidence            76644  5677889999999999999999543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.00  E-value=2.8e-05  Score=73.81  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=67.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++|+|||+|+.|+.+|..|..  .+.+|+++++.+.+...         ...++.....+.+++.|++++.++.+.  
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg--  504 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG--  504 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC--
Confidence            35799999999999999999996  48999999987655322         244677777888999999999987541  


Q ss_pred             ccCCCceeEEcCCC-cEEeccEEEEccCCC-CC
Q 022896          206 SVSEGSDTYLTSTG-DTINADCHFLCTGKP-VG  236 (290)
Q Consensus       206 ~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~-~~  236 (290)
                          ..+++  .+- +...+|.||+|+|.+ |.
T Consensus       505 ----~~~~~--~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        505 ----KTFTV--PQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             ----CccCH--HHHhhccCCCEEEEecCCCCCC
Confidence                11111  111 124689999999985 44

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.00  E-value=3.3e-05  Score=71.64  Aligned_cols=92  Identities=18%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++|+|||+|+.|+.+|..|..  .+.+|+++++.+.+...         ++.++.....+.+++.|++++.++.+.  
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~--  505 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG--  505 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC--
Confidence            46899999999999999999986  58999999986543221         233455555677888999999987651  


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCC-CC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKP-VG  236 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~-~~  236 (290)
                          .  .+...+.....+|.||+|+|.+ |.
T Consensus       506 ----~--~v~~~~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        506 ----K--TITIEELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             ----C--cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence                1  1222333356799999999984 54

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.99  E-value=2.5e-05  Score=68.19  Aligned_cols=96  Identities=17%  Similarity=0.263  Sum_probs=59.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||++|+.+|..|.+ |.+|+++++.+.+....       .++........+.+  .+++++ ...+..++..
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~-------d~e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~  240 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-------DEDIAHILREKLEN--DGVKIFTGAALKGLNSY  240 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc-------cHHHHHHHHHHHHH--CCCEEEECCEEEEEEEc
Confidence            4689999999999999999976 99999999987643211       01111111111111  134443 3345555543


Q ss_pred             --eEEe-cCc--eEEeccEEEEccCCCCCCCC
Q 022896           91 --EVLT-AEG--RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 --~v~~-~~~--~~~~~~~vi~a~G~~~~~p~  117 (290)
                        .+.. .++  .++.+|.+++|+|..|+...
T Consensus       241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~  272 (458)
T PRK06912        241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ  272 (458)
T ss_pred             CCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence              2222 233  36899999999999988654

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.99  E-value=3.6e-05  Score=64.31  Aligned_cols=67  Identities=7%  Similarity=-0.082  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCc-hhhcccccc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGS-DWLKDTILK  246 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~-~~l~~~~~~  246 (290)
                      .+...+.+-+++.|.++.+...|.+|..+++. +.|.+.||+++.+..|+.-++.+--. .++....++
T Consensus       265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LP  333 (561)
T KOG4254|consen  265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALP  333 (561)
T ss_pred             HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCC
Confidence            67888899999999999999999999888866 88899999999998887776655322 555555443

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.99  E-value=6.5e-06  Score=72.31  Aligned_cols=39  Identities=15%  Similarity=0.102  Sum_probs=35.6

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~   52 (290)
                      +||+|||+||+|+++|++|++ |++|+|||++...++.|.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~   40 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI   40 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence            699999999999999999975 999999999998886664

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.99  E-value=7e-05  Score=65.58  Aligned_cols=96  Identities=28%  Similarity=0.322  Sum_probs=68.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------CC---------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------------------------IG---------  178 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------------------------~~---------  178 (290)
                      ++++|||+|+.|+.+|..+.+  .+.+|.++++.+ +...                             ..         
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   78 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV   78 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence            579999999999999999987  488999998754 1100                             00         


Q ss_pred             -h------------hHHHHHHHHHHhCCcEEEeCceEeecc--cCCCceeEEcCCCc--EEeccEEEEccCCCCC
Q 022896          179 -P------------KAGDKTRDWLISKKVDVKLGERVNLDS--VSEGSDTYLTSTGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       179 -~------------~~~~~~~~~~~~~gi~~~~~~~v~~i~--~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~  236 (290)
                       -            .+...+.+.+++.|++++.+.-. .++  .+++.+.+.+.+|+  ++.+|.+|+|||..|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~-~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~  152 (466)
T PRK07845         79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGR-LIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR  152 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-EeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence             0            01123445667789999887543 222  45566777777775  7999999999999885

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.98  E-value=1.9e-05  Score=67.95  Aligned_cols=94  Identities=19%  Similarity=0.338  Sum_probs=63.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceE-Eeeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRI-VASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~   90 (290)
                      ..+++|||+|+.|+.+|.+|++ |++|+++|+.+..++....      +.+... +....+.. ++++ ....+..++..
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~------~~~~~~-~~~~l~~~-gi~~~~~~~~~~i~~~  207 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD------PEVAEE-LAELLEKY-GVELLLGTKVVGVEGK  207 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh------HHHHHH-HHHHHHHC-CcEEEeCCceEEEEcc
Confidence            4799999999999999999975 9999999999987754321      111111 11111111 1333 34455555543


Q ss_pred             e-------EEecCceEEeccEEEEccCCCCC
Q 022896           91 E-------VLTAEGRRVVYDYLVIATGHKDP  114 (290)
Q Consensus        91 ~-------v~~~~~~~~~~~~vi~a~G~~~~  114 (290)
                      .       +...++..+.+|.+++++|.+|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         208 GNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             cCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            1       46677788999999999999985

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.98  E-value=8.1e-06  Score=72.07  Aligned_cols=36  Identities=33%  Similarity=0.451  Sum_probs=32.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE   48 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~   48 (290)
                      .+||+|||+|.|||+||.++++|.+|+|+||....+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~   38 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRN   38 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCC
Confidence            589999999999999999998899999999988543

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.98  E-value=7.3e-06  Score=66.99  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=32.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ....||+|||||.+|.+.|+.|++ |.+|+||||+=
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            346999999999999999999987 99999999975

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.98  E-value=4.8e-05  Score=57.64  Aligned_cols=138  Identities=20%  Similarity=0.227  Sum_probs=89.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC--------------------------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI--------------------------------------  177 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~--------------------------------------  177 (290)
                      .-.|+|+|+|++|+.+|.+|++  .+.+|.+++++-.+....                                      
T Consensus        30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d  107 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD  107 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence            4689999999999999999997  489999999776543211                                      


Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCC-c-eeEEc------CCC-----cEEeccEEEEccCCCCCc-hhhccc
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S-DTYLT------STG-----DTINADCHFLCTGKPVGS-DWLKDT  243 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~-~~v~~------~~g-----~~~~~d~vv~a~G~~~~~-~~l~~~  243 (290)
                      ...+...+....-+.|.+++..+.++++...++ . ..+..      ..+     -.++++.||-+||+.... .++...
T Consensus       108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr  187 (262)
T COG1635         108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKR  187 (262)
T ss_pred             HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence            224444555666677899999999998877666 2 22221      122     368899999999987532 333222


Q ss_pred             c--cccc-------cCCCC-cEEecCCccccCCCCeEEeccccC
Q 022896          244 I--LKDS-------LDTHG-MLMVDENLRVKGQKNIFAIGDITD  277 (290)
Q Consensus       244 ~--~~~~-------~~~~g-~~~v~~~~~~~~~~~vfa~Gd~~~  277 (290)
                      +  +..+       +.+.+ .+.|+.+.+  -+||+|++|=+++
T Consensus       188 ~~~l~~~~~Ge~~mw~e~~E~lvV~~T~e--V~pgL~vaGMa~~  229 (262)
T COG1635         188 IPELGIEVPGEKSMWAERGEDLVVENTGE--VYPGLYVAGMAVN  229 (262)
T ss_pred             ccccccccCCCcchhhhHHHHHHHhcccc--ccCCeEeehhhHH
Confidence            1  1111       11111 233333444  3899999997754

>TIGR02053 MerA mercuric reductase

Probab=97.98  E-value=2.6e-05  Score=68.25  Aligned_cols=96  Identities=19%  Similarity=0.242  Sum_probs=59.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||+|++|+.+|..|++ |.+|+++++.+.+....       .+.........+.  ..+++++ ...+..+..+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~  236 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-------EPEISAAVEEALA--EEGIEVVTSAQVKAVSVR  236 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-------CHHHHHHHHHHHH--HcCCEEEcCcEEEEEEEc
Confidence            4789999999999999999976 99999999987543211       1111110001111  1134443 2345555432


Q ss_pred             ----eEEec---CceEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTA---EGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~---~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+.+.   ++.++.+|.+++|+|..|+...
T Consensus       237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~  270 (463)
T TIGR02053       237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTDG  270 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence                23322   2357999999999999987663

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.98  E-value=7.4e-06  Score=73.51  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      +.||||||+|.|||+||.++++ |.+|+|+||....
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4699999999999999999976 9999999987753

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.97  E-value=2.9e-05  Score=68.17  Aligned_cols=96  Identities=21%  Similarity=0.266  Sum_probs=60.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||+|+.|+.+|..|++ |.+|+++++.+.+....       .+.........+..  .++.+. ...+..++..
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  253 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAA-------DEQVAKEAAKAFTK--QGLDIHLGVKIGEIKTG  253 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcC-------CHHHHHHHHHHHHH--cCcEEEeCcEEEEEEEc
Confidence            4799999999999999999976 99999999987543110       11111111111111  134443 3355555532


Q ss_pred             ----eEEecC--c--eEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTAE--G--RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~~--~--~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+...+  +  ..+.+|.+++|+|..|+.+.
T Consensus       254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~  288 (475)
T PRK06327        254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG  288 (475)
T ss_pred             CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence                233333  2  46899999999999988764

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.97  E-value=8.3e-06  Score=73.09  Aligned_cols=39  Identities=21%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      .+.||||||+|.+||+||+.+++ |.+|+|+||....++.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            36899999999999999999975 9999999999876654

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.95  E-value=8.3e-06  Score=67.41  Aligned_cols=35  Identities=31%  Similarity=0.580  Sum_probs=31.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      +.+|+|||||++|+++|..|.+ |.+|+|+|+.+.+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            4789999999999999999976 9999999997754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.95  E-value=2.8e-05  Score=67.70  Aligned_cols=96  Identities=18%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||..|+-+|..|++ |.+|+++++.+.+....       .+.........+..  .++.+. ...+..+...
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~-------d~~~~~~~~~~l~~--~gI~i~~~~~v~~i~~~  236 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSF-------DSMISETITEEYEK--EGINVHKLSKPVKVEKT  236 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCccc-------CHHHHHHHHHHHHH--cCCEEEcCCEEEEEEEe
Confidence            4789999999999999999976 99999999987543111       11111110011110  123333 2344444321


Q ss_pred             -----eEEecCc-eEEeccEEEEccCCCCCCCC
Q 022896           91 -----EVLTAEG-RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 -----~v~~~~~-~~~~~~~vi~a~G~~~~~p~  117 (290)
                           .+.+.++ ..+.+|.+++|+|..|+...
T Consensus       237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~  269 (450)
T TIGR01421       237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG  269 (450)
T ss_pred             CCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence                 2445556 57899999999999987653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.94  E-value=0.00021  Score=61.40  Aligned_cols=140  Identities=14%  Similarity=0.189  Sum_probs=90.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC--------------------------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI--------------------------------------  177 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~--------------------------------------  177 (290)
                      .++++|||+|++|+-.|..|..  .+.++++++|.+.+....                                      
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~   83 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP   83 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence            6899999999999999999986  488888888766542100                                      


Q ss_pred             ----C-hhHHHHHHHHHHhCCc--EEEeCceEeecccCC-CceeEEcCCC----cEEeccEEEEccCCC--CCchhhccc
Q 022896          178 ----G-PKAGDKTRDWLISKKV--DVKLGERVNLDSVSE-GSDTYLTSTG----DTINADCHFLCTGKP--VGSDWLKDT  243 (290)
Q Consensus       178 ----~-~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~-~~~~v~~~~g----~~~~~d~vv~a~G~~--~~~~~l~~~  243 (290)
                          . .++.+.+...++..++  .+..++++..++... +.+.|.+.++    ++.-+|.|++|+|..  |+.+.+...
T Consensus        84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence                1 1556667777777776  577788777777666 6777765444    366799999999987  444444332


Q ss_pred             ccccccCCCCcEEecCCccc---cCCCCeEEeccccCccc
Q 022896          244 ILKDSLDTHGMLMVDENLRV---KGQKNIFAIGDITDIRV  280 (290)
Q Consensus       244 ~~~~~~~~~g~~~v~~~~~~---~~~~~vfa~Gd~~~~~~  280 (290)
                      ++  + .=.|.+.---.++.   -..+.|.++|--.++.+
T Consensus       164 ~~--~-~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~D  200 (448)
T KOG1399|consen  164 GI--E-SFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMD  200 (448)
T ss_pred             ch--h-hcCCcceehhhccCcccccCceEEEECCCccHHH
Confidence            11  1 11233333222322   13467888876555443

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.94  E-value=1e-05  Score=67.05  Aligned_cols=42  Identities=26%  Similarity=0.303  Sum_probs=35.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~   53 (290)
                      +.++|+|+|||++||++|++|++ +  ..++++|+.+..|+....
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            46899999999999999999975 4  556779999999866544

>PRK12839 hypothetical protein; Provisional

Probab=97.94  E-value=1.1e-05  Score=72.12  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=35.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      ..++||+|||+|.+|+++|++|++ |.+|+|||++...++.
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   46 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA   46 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            347999999999999999999975 9999999999876644

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.94  E-value=1e-05  Score=73.24  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+||+|||||.|||+||.++++ |.+|+|+|+...
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~   69 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS   69 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            35899999999999999999976 999999998654

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.94  E-value=1e-05  Score=73.44  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ...||+|||||.|||+||..+++ |.+|+|+|+....+
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~   41 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR   41 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            46899999999999999999975 99999999987543

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.93  E-value=1e-05  Score=72.13  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      ++||+|||+|.+|+++|++|++ |.+|+|||+....++
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG   43 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG   43 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            6899999999999999999986 999999999876543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.93  E-value=0.00011  Score=63.86  Aligned_cols=99  Identities=20%  Similarity=0.203  Sum_probs=65.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-cccc------CCh-----------hHH----------HHH---
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LLEF------IGP-----------KAG----------DKT---  185 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~-~~~~------~~~-----------~~~----------~~~---  185 (290)
                      .+++|||+|+.|+.+|..+..  .+.+|.++++.+. +...      .+.           .+.          ..+   
T Consensus         4 yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK   81 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            479999999999999999987  4889999998643 2110      000           110          111   


Q ss_pred             -HHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCc-EEeccEEEEccCCCCCchhh
Q 022896          186 -RDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       186 -~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~~~~~l  240 (290)
                       .+.+.+ .|++++.+. ++.  .+.+.+.+.+.+|. ++.+|.+|+|||..|..+-+
T Consensus        82 ~~~~~~~~~gv~~~~g~-~~~--i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i  136 (441)
T PRK08010         82 NFHNLADMPNIDVIDGQ-AEF--INNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPI  136 (441)
T ss_pred             HHHHHhhcCCcEEEEEE-EEE--ecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCC
Confidence             112223 389988764 322  34455777777775 69999999999998865433

>PRK14694 putative mercuric reductase; Provisional

Probab=97.93  E-value=5.2e-05  Score=66.45  Aligned_cols=94  Identities=18%  Similarity=0.260  Sum_probs=58.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEEe-eeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~   90 (290)
                      ..+++|||+|+.|+.+|..|++ |.+|+++++...+..        ..+.........+.+  .+++++. ..+..++.+
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--------~~~~~~~~l~~~l~~--~GI~v~~~~~v~~i~~~  247 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--------EDPAVGEAIEAAFRR--EGIEVLKQTQASEVDYN  247 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--------CCHHHHHHHHHHHHh--CCCEEEeCCEEEEEEEc
Confidence            4689999999999999999976 999999997543321        011111111111111  1344443 355555432


Q ss_pred             ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+.+ ++.++.+|.+++|+|..|+...
T Consensus       248 ~~~~~v~~-~~~~i~~D~vi~a~G~~pn~~~  277 (468)
T PRK14694        248 GREFILET-NAGTLRAEQLLVATGRTPNTEN  277 (468)
T ss_pred             CCEEEEEE-CCCEEEeCEEEEccCCCCCcCC
Confidence                1333 3346999999999999987654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.92  E-value=0.00011  Score=64.41  Aligned_cols=95  Identities=20%  Similarity=0.156  Sum_probs=65.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------CCh-------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP-------------------------------  179 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------~~~-------------------------------  179 (290)
                      ..++|||+|+.|+.+|..++.  .+.+|.++++.+.+...      .+.                               
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID   82 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            579999999999999999986  48999999976443210      000                               


Q ss_pred             hH-----------HHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCC
Q 022896          180 KA-----------GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~-----------~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~  236 (290)
                      .+           ...+...+++.||+++.+.-.   ..+++.+.+...+|  +++.+|.+|+|||.+|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence            01           011123456679999977533   23455566766666  47899999999999885

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.92  E-value=1e-05  Score=68.77  Aligned_cols=35  Identities=37%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      .||+|||||++|+.+|+.|++ |.+|+|||+++..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            479999999999999999976 99999999877543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.92  E-value=5.5e-05  Score=66.11  Aligned_cols=91  Identities=16%  Similarity=0.256  Sum_probs=67.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++++|||+|+.|+.+|..+..  .+.+|+++++.+.+..         .+..++.....+.+++.|++++.++.+...
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence            46899999999999999999986  4889999998765421         124455566678889999999999877211


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                              +... +....+|.||+|+|..+.
T Consensus       218 --------~~~~-~~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLD-DLLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHH-HHHhcCCEEEEEeCCCCC
Confidence                    1111 113479999999999763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06116 glutathione reductase; Validated

Probab=97.92  E-value=3.1e-05  Score=67.58  Aligned_cols=96  Identities=19%  Similarity=0.224  Sum_probs=62.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||+|+.|+.+|..|.+ |.+|+++++++.+...+       .+.........+.+  .+++++ ...+..+..+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~L~~--~GV~i~~~~~V~~i~~~  237 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGF-------DPDIRETLVEEMEK--KGIRLHTNAVPKAVEKN  237 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcccc-------CHHHHHHHHHHHHH--CCcEEECCCEEEEEEEc
Confidence            4789999999999999999976 99999999987542111       11110111111111  133443 3455555431


Q ss_pred             -----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           91 -----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 -----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                           .+.+.++..+.+|.+++|+|..|+...
T Consensus       238 ~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~  269 (450)
T PRK06116        238 ADGSLTLTLEDGETLTVDCLIWAIGREPNTDG  269 (450)
T ss_pred             CCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence                 355567778999999999999987664

>PRK06370 mercuric reductase; Validated

Probab=97.92  E-value=4.6e-05  Score=66.69  Aligned_cols=95  Identities=15%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||+.|+.+|..|++ |.+|+++++.+.+....       .+.........+.+  .+++++ ...+..++..
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------~~~~~~~l~~~l~~--~GV~i~~~~~V~~i~~~  241 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE-------DEDVAAAVREILER--EGIDVRLNAECIRVERD  241 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc-------CHHHHHHHHHHHHh--CCCEEEeCCEEEEEEEc
Confidence            4789999999999999999976 99999999987653211       00110000001111  134443 3455566532


Q ss_pred             ----eEEe---cCceEEeccEEEEccCCCCCCC
Q 022896           91 ----EVLT---AEGRRVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        91 ----~v~~---~~~~~~~~~~vi~a~G~~~~~p  116 (290)
                          .+..   .++..+.+|.+++|+|.+|+..
T Consensus       242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD  274 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence                1222   2345799999999999998765

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.92  E-value=4.3e-05  Score=66.96  Aligned_cols=96  Identities=21%  Similarity=0.265  Sum_probs=60.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||+.|+.+|..|++ |.+|+|+++.+.+....       .+.........+.+  .+++++ ...+..+...
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-------d~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~  242 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-------DAEVSKEIAKQYKK--LGVKILTGTKVESIDDN  242 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-------CHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence            4689999999999999999976 99999999877543211       01110110111111  134443 3455555432


Q ss_pred             ----eEEec--Cc--eEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~--~~--~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+.+.  ++  .++.+|.+++|+|.+|+...
T Consensus       243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~  277 (466)
T PRK07818        243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG  277 (466)
T ss_pred             CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence                13332  44  46899999999999988653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.91  E-value=0.00021  Score=52.65  Aligned_cols=42  Identities=24%  Similarity=0.307  Sum_probs=34.1

Q ss_pred             CcEEE-eCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          193 KVDVK-LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       193 gi~~~-~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      ++++. ...+|+.++..+++..+.+.+|..+.+|.||+|+|.+
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh~  156 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGHQ  156 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCCC
Confidence            54443 3558888888888888889999999999999999963

>PLN02815 L-aspartate oxidase

Probab=97.89  E-value=1.7e-05  Score=71.01  Aligned_cols=37  Identities=32%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      ..+||+|||+|.|||+||.++++ | +|+|+||....++
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg   65 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES   65 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence            45899999999999999999987 7 9999999886543

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.89  E-value=1.3e-05  Score=71.44  Aligned_cols=39  Identities=18%  Similarity=0.333  Sum_probs=34.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      ..++||||||+| +|++||..+++ |.+|+|+||.+.+|+.
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~   53 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS   53 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence            347999999999 89999999976 9999999999876653

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.89  E-value=1.1e-05  Score=72.75  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~   46 (290)
                      .+||+|||||.|||+||.++++   |.+|+||||...
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            5899999999999999999975   899999999864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.89  E-value=6.8e-05  Score=65.86  Aligned_cols=89  Identities=19%  Similarity=0.295  Sum_probs=66.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++++|||+|+.|+.+|..|..  .+.+|+++++.+.+..         .++..+.....+.+++.|++++.++.+. .
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~-~  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG-V  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeC-C
Confidence            45899999999999999999986  4789999998775421         1234556666678888999999998873 1


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      ....        ++....+|.|++|+|.+
T Consensus       219 ~~~~--------~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       219 DISA--------DELKEQFDAVVLAGGAT  239 (485)
T ss_pred             ccCH--------HHHHhhCCEEEEccCCC
Confidence            1110        11235799999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK02106 choline dehydrogenase; Validated

Probab=97.88  E-value=1.4e-05  Score=71.52  Aligned_cols=61  Identities=8%  Similarity=-0.085  Sum_probs=42.6

Q ss_pred             HHHHHhCCcEEEeCceEeecccCCCc-eeEEc--CCCc--EEeccEEEEccCCCCCchhhcccccc
Q 022896          186 RDWLISKKVDVKLGERVNLDSVSEGS-DTYLT--STGD--TINADCHFLCTGKPVGSDWLKDTILK  246 (290)
Q Consensus       186 ~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~--~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~  246 (290)
                      ....++.|++++.++.|+++..+++. ..|+.  .++.  .+.++.||+|+|..-.+.+|..+++.
T Consensus       208 ~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG  273 (560)
T PRK02106        208 DPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIG  273 (560)
T ss_pred             ccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence            33344678999999999999887543 33332  3332  46799999999987666777666653

>PLN02661 Putative thiazole synthesis

Probab=97.88  E-value=0.00025  Score=58.66  Aligned_cols=99  Identities=16%  Similarity=0.125  Sum_probs=66.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------------CC----------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------IG----------  178 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------~~----------  178 (290)
                      .-+++|||+|.+|+-+|..+.+ .++.+|.++++...+...                           ++          
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~-~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHH-cCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            4689999999999999999985 257899999876543110                           00          


Q ss_pred             -hhHHHHHHHHH-HhCCcEEEeCceEeecccCCCc-eeEEc------CC--C------cEEeccEEEEccCCCC
Q 022896          179 -PKAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGS-DTYLT------ST--G------DTINADCHFLCTGKPV  235 (290)
Q Consensus       179 -~~~~~~~~~~~-~~~gi~~~~~~~v~~i~~~~~~-~~v~~------~~--g------~~~~~d~vv~a~G~~~  235 (290)
                       ..+...+.+.+ ++.|++++.++.+.++..+++. ..+..      .+  +      ..+.++.||+|||...
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence             11122344433 4478999999999888776554 23321      11  1      2689999999999654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.87  E-value=9.8e-05  Score=63.68  Aligned_cols=91  Identities=14%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC----C------hhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI----G------PKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      .+++|+|||+|++|+.+|..+..+ .+.+|+++++.+.+....    .      ..+...+.+.+...+++++.+..+-.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence            468999999999999999977643 488999999988764321    1      13445555566678888886555411


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                            .  +.. +.-...+|.||+|+|.++
T Consensus       117 ------D--vt~-eeL~~~YDAVIlAtGA~~  138 (506)
T PTZ00188        117 ------D--LKM-EELRNHYNCVIFCCGASE  138 (506)
T ss_pred             ------c--cCH-HHHHhcCCEEEEEcCCCC
Confidence                  0  111 111237999999999875

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.87  E-value=1.5e-05  Score=70.80  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~   47 (290)
                      ..+||+|||+|.|||+||.++++..+|+|+||....
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~   42 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLS   42 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCC
Confidence            358999999999999999999877899999998753

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=1.8e-05  Score=66.53  Aligned_cols=35  Identities=34%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...|||+|||||-||..||...++ |.+.+++..+-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            457999999999999999999988 99999998664

>PLN02507 glutathione reductase

Probab=97.86  E-value=5.6e-05  Score=66.62  Aligned_cols=96  Identities=24%  Similarity=0.254  Sum_probs=60.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||+.|+-+|..|++ |.+|+|+++.+.+....       .+.........+.+  .+++++ ...+..+...
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~-------d~~~~~~l~~~l~~--~GI~i~~~~~V~~i~~~  273 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGF-------DDEMRAVVARNLEG--RGINLHPRTNLTQLTKT  273 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCccc-------CHHHHHHHHHHHHh--CCCEEEeCCEEEEEEEe
Confidence            4689999999999999999976 99999999877432110       11110000001111  133333 2344454421


Q ss_pred             ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+.+.++.++.+|.+++|+|..|+...
T Consensus       274 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  304 (499)
T PLN02507        274 EGGIKVITDHGEEFVADVVLFATGRAPNTKR  304 (499)
T ss_pred             CCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence                355567778999999999999987654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.86  E-value=0.00069  Score=58.79  Aligned_cols=140  Identities=19%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccccc------------------------C--------ChhHH
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEF------------------------I--------GPKAG  182 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~~------------------------~--------~~~~~  182 (290)
                      ..+|+|||+|.+|+-+|..|.++  +.. +.++++.+.+...                        +        .....
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~   85 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK   85 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence            46899999999999999999985  444 8888877543210                        0        11256


Q ss_pred             HHHHHHHHhCCcE--EEeCceEeecccCCC--ceeEEcCCCcE--EeccEEEEccCCCCCchhhcc-cccccccCCCCcE
Q 022896          183 DKTRDWLISKKVD--VKLGERVNLDSVSEG--SDTYLTSTGDT--INADCHFLCTGKPVGSDWLKD-TILKDSLDTHGML  255 (290)
Q Consensus       183 ~~~~~~~~~~gi~--~~~~~~v~~i~~~~~--~~~v~~~~g~~--~~~d~vv~a~G~~~~~~~l~~-~~~~~~~~~~g~~  255 (290)
                      ..+.+.+++.++.  +..++.|+.+..+++  ...|.+++|..  +.+|.||+|||+.. .+.+.. .+.   .+..|.+
T Consensus        86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~-~P~iP~~~G~---~~f~g~~  161 (443)
T COG2072          86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS-EPYIPDFAGL---DEFKGRI  161 (443)
T ss_pred             HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC-CCCCCCCCCc---cCCCceE
Confidence            6677778777653  455666666666554  47777777765  55999999999843 233222 121   1223443


Q ss_pred             EecCCcc---ccCCCCeEEeccccCcccc
Q 022896          256 MVDENLR---VKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       256 ~v~~~~~---~~~~~~vfa~Gd~~~~~~~  281 (290)
                      .--.++.   ...-++|-++|--++.-+.
T Consensus       162 ~HS~~~~~~~~~~GKrV~VIG~GaSA~di  190 (443)
T COG2072         162 LHSADWPNPEDLRGKRVLVIGAGASAVDI  190 (443)
T ss_pred             EchhcCCCccccCCCeEEEECCCccHHHH
Confidence            3332221   1246889999876655443

>PLN03000 amine oxidase

Probab=97.85  E-value=1.7e-05  Score=72.75  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=38.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL   54 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~   54 (290)
                      ...+|+|||||++||++|++|++ |++|+|+|+++..|+.....
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~  226 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK  226 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence            46899999999999999999976 99999999999988776544

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.85  E-value=7.3e-05  Score=65.95  Aligned_cols=95  Identities=20%  Similarity=0.269  Sum_probs=57.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEEe-eeeeeeec-
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE-   89 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-   89 (290)
                      ..+++|||||+.|+.+|..|++ |.+|++++++..+. .   +    .+.........+.+  .+++++. ..+..+.. 
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-~---~----d~~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~  251 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR-G---F----DRQCSEKVVEYMKE--QGTLFLEGVVPINIEKM  251 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc-c---C----CHHHHHHHHHHHHH--cCCEEEcCCeEEEEEEc
Confidence            3589999999999999999976 99999998743221 1   1    01111110111111  1233332 22333321 


Q ss_pred             --c-eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           90 --N-EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        90 --~-~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                        . .+.+.++.++.+|.+++|+|..|+...
T Consensus       252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  282 (499)
T PTZ00052        252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKG  282 (499)
T ss_pred             CCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence              1 355566778899999999999987654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.85  E-value=1.4e-05  Score=74.06  Aligned_cols=33  Identities=33%  Similarity=0.576  Sum_probs=30.2

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~   46 (290)
                      ++|+||||||+||++|..|++   |++|+|+|+++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            479999999999999999974   799999999885

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.85  E-value=0.0002  Score=62.95  Aligned_cols=97  Identities=27%  Similarity=0.283  Sum_probs=66.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------------C-------Chh-
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------I-------GPK-  180 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------~-------~~~-  180 (290)
                      ..+++|||+|+.|+.+|..+..  .+.+|.++++.. +...                           +       ... 
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   80 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDF   80 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            4579999999999999999987  489999999752 2100                           0       000 


Q ss_pred             -------------HHHHHHHHHHhCCcEEEeCceEeecccC-----CCceeEEcCCC--cEEeccEEEEccCCCCC
Q 022896          181 -------------AGDKTRDWLISKKVDVKLGERVNLDSVS-----EGSDTYLTSTG--DTINADCHFLCTGKPVG  236 (290)
Q Consensus       181 -------------~~~~~~~~~~~~gi~~~~~~~v~~i~~~-----~~~~~v~~~~g--~~~~~d~vv~a~G~~~~  236 (290)
                                   +.....+.+++.|++++.+.- +.+...     ++.+.+.+.+|  +++.+|.+|+|||..|.
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a-~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~  155 (472)
T PRK05976         81 AKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIG-RILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV  155 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence                         111223445677999998753 333322     22567777676  47999999999999885

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.85  E-value=0.00011  Score=69.13  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=63.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      +++|+|||+|+.|+.+|..|+.  .+.+|+++++.+.+...         .+.+......+.+.+.|++++.++...   
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d---  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD---  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc---
Confidence            5799999999999999999986  58999999987654322         123444455567788899999874210   


Q ss_pred             cCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          207 VSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       207 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                             +...+.....+|.|++|+|.++
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~  633 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWK  633 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCC
Confidence                   1122233466999999999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.85  E-value=0.00012  Score=64.55  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  214 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v  214 (290)
                      .+++++|+|+|.+|+++|..|..  .+.+|+++++.+.       .....+.+.+++.|++++.+..+.           
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~-----------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT-----------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-----------
Confidence            57899999999999999999986  4889999886653       334455667888999998876542           


Q ss_pred             EcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896          215 LTSTGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       215 ~~~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                           ....+|.||+++|..|+.+++..
T Consensus        75 -----~~~~~D~Vv~s~Gi~~~~~~~~~   97 (480)
T PRK01438         75 -----LPEDTDLVVTSPGWRPDAPLLAA   97 (480)
T ss_pred             -----ccCCCCEEEECCCcCCCCHHHHH
Confidence                 12458999999999998887543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.81  E-value=7.8e-05  Score=65.27  Aligned_cols=94  Identities=22%  Similarity=0.352  Sum_probs=58.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccccc-ceEE-eeeeeeeec
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVN-GRIV-ASPAINITE   89 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~   89 (290)
                      ..+++|||+|+.|+.+|..|++ |.+|+++++.+.+....       .+....    ...+.+.. +.++ ...+..+..
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~----~~~~~l~~~I~i~~~~~v~~i~~  237 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLE-------DPEVSK----QAQKILSKEFKIKLGAKVTSVEK  237 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcch-------hHHHHH----HHHHHHhhccEEEcCCEEEEEEE
Confidence            4789999999999999999976 99999999987653211       011100    01111110 2222 234444432


Q ss_pred             c---eEE--e--cCceEEeccEEEEccCCCCCCCC
Q 022896           90 N---EVL--T--AEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        90 ~---~v~--~--~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      .   .+.  .  .++.++.+|.+++|+|..|+.+.
T Consensus       238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  272 (460)
T PRK06292        238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG  272 (460)
T ss_pred             cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence            1   232  1  23357899999999999988764

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.79  E-value=0.00012  Score=64.20  Aligned_cols=89  Identities=20%  Similarity=0.370  Sum_probs=65.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++++|||+|+.|+.+|..+..  .+.+|+++++.+.+...         ...++.....+.+.+.|++++.++.+.. 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  218 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-  218 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-
Confidence            45799999999999999999986  58899999987665321         2334555666778899999999987731 


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      ...       . +.....+|.|++|+|..
T Consensus       219 ~~~-------~-~~~~~~~d~vvlAtGa~  239 (471)
T PRK12810        219 DIT-------A-EELLAEYDAVFLGTGAY  239 (471)
T ss_pred             cCC-------H-HHHHhhCCEEEEecCCC
Confidence            110       0 11135799999999997

>PRK08275 putative oxidoreductase; Provisional

Probab=97.79  E-value=1.8e-05  Score=70.63  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~   46 (290)
                      ..+||+|||||.|||+||.++++   |.+|+|+||...
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            35899999999999999999964   689999999875

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.78  E-value=0.00021  Score=63.56  Aligned_cols=107  Identities=18%  Similarity=0.222  Sum_probs=77.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCC-CCeEEEEecCcccc-------ccCC-----hhHHHHHHHHHHhCCcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLL-------EFIG-----PKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~-~~~v~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      ..+++|||+|..|..+.+++.+..+ ...++++...++..       +.+.     .++...-.++.+++||+++.+.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            4689999999999999988876322 24677776444321       1111     134444568889999999999999


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccc
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI  244 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~  244 (290)
                      ..+  +.....|.++.|.++.||.+++|||+.|..+-+++..
T Consensus        83 ~~i--dr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~  122 (793)
T COG1251          83 IQI--DRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSD  122 (793)
T ss_pred             EEe--ccCcceEEccCCcEeecceeEEecCccccccCCCCCC
Confidence            544  4556678889999999999999999998765555544

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.77  E-value=2.5e-05  Score=70.09  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~   47 (290)
                      .+||+|||||.|||+||..+++   +.+|+|+||....
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            5899999999999999999974   4899999998653

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.75  E-value=3.1e-05  Score=74.84  Aligned_cols=40  Identities=30%  Similarity=0.429  Sum_probs=34.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      ....||||||+|.||++||.++++ |.+|+|+||....++.
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~  447 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN  447 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            346999999999999999999976 9999999999876543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.75  E-value=2.6e-05  Score=69.95  Aligned_cols=32  Identities=19%  Similarity=0.414  Sum_probs=29.3

Q ss_pred             cEEEEcCChHHHHHHHHhc----c-CCcEEEEcCCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQ----F-SADVTLIDPKEY   46 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~----~-g~~v~vie~~~~   46 (290)
                      ||||||||.|||+||..++    + |.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            7999999999999999996    4 899999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.75  E-value=3.5e-05  Score=68.21  Aligned_cols=38  Identities=32%  Similarity=0.244  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ..++||||||||.|||.||..++. |.+|+|+||....+
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            447999999999999999999986 99999999988644

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.75  E-value=8.1e-05  Score=65.30  Aligned_cols=96  Identities=19%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhc---c-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINI   87 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~---~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~   87 (290)
                      ..+++|||||+.|+.+|..+.   + |.+|+|+++.+.+....       .+.........+..  .++.++ ...+..+
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~-------d~~~~~~l~~~L~~--~GI~i~~~~~v~~i  257 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGF-------DSTLRKELTKQLRA--NGINIMTNENPAKV  257 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccccc-------CHHHHHHHHHHHHH--cCCEEEcCCEEEEE
Confidence            478999999999999997653   3 89999999987643111       11111111111111  123333 2334444


Q ss_pred             ecc-----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           88 TEN-----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        88 ~~~-----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      ...     .+.+.++.++.+|.+++|+|..|+...
T Consensus       258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~  292 (486)
T TIGR01423       258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT  292 (486)
T ss_pred             EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence            321     355556778999999999999987653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.00044  Score=52.61  Aligned_cols=98  Identities=23%  Similarity=0.220  Sum_probs=71.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEE--------------------EecCcccccc-CChhHHHHHHHHHHhCCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTL--------------------VHKGSRLLEF-IGPKAGDKTRDWLISKKV  194 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~--------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~gi  194 (290)
                      ..+++|||+|+.+...|.+++..  +.+-.+                    ++..+.|... ..+++.+.+++..++.|.
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaara--elkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt   85 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARA--ELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT   85 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhc--ccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence            46899999999998888877642  322222                    2233333322 356899999999999999


Q ss_pred             EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      +++.. .|.+++.+...+.+-++. +.+.+|.||+|||....-
T Consensus        86 ~i~tE-tVskv~~sskpF~l~td~-~~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   86 EIITE-TVSKVDLSSKPFKLWTDA-RPVTADAVILATGASAKR  126 (322)
T ss_pred             eeeee-ehhhccccCCCeEEEecC-CceeeeeEEEecccceee
Confidence            99866 566677777777776644 479999999999987643

>PLN02976 amine oxidase

Probab=97.73  E-value=3.3e-05  Score=73.82  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=37.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~   53 (290)
                      ..+||+|||||++|+++|++|.+ |++|+|||+++.+|+.+..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t  734 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT  734 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence            45899999999999999999975 9999999999988876544

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.71  E-value=3.6e-05  Score=68.03  Aligned_cols=35  Identities=31%  Similarity=0.526  Sum_probs=31.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      ..+.||+|||+|.|||+||.+++ +.+|+|+||...
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa-~~~V~lleK~~~   41 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA-PRPVVVLSPAPL   41 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC-cCCEEEEECCCC
Confidence            34699999999999999999997 679999999875

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.70  E-value=3.5e-05  Score=69.06  Aligned_cols=35  Identities=31%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~   47 (290)
                      .+||+|||||.|||+||..+++   |.+|+|+||....
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~   40 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM   40 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            5899999999999999999964   5899999998753

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.70  E-value=3.6e-05  Score=72.59  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+||+|||||.|||+||.++++ |.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            46899999999999999999976 999999999764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.70  E-value=0.00017  Score=63.35  Aligned_cols=95  Identities=15%  Similarity=0.151  Sum_probs=55.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEEe-eeeeeeec-
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE-   89 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-   89 (290)
                      ..+++|||||+.|+-+|..|++ |.+|+++++...+..        ..+.........+..  .++.++. ..+..+.. 
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~--------~d~~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~  249 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--------FDQDCANKVGEHMEE--HGVKFKRQFVPIKVEQI  249 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccc--------cCHHHHHHHHHHHHH--cCCEEEeCceEEEEEEc
Confidence            3679999999999999999976 999999997432211        011111111111111  1333332 22233321 


Q ss_pred             --c-eEEecCc---eEEeccEEEEccCCCCCCCC
Q 022896           90 --N-EVLTAEG---RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        90 --~-~v~~~~~---~~~~~~~vi~a~G~~~~~p~  117 (290)
                        . .+...++   .++.+|.+++|+|..|+...
T Consensus       250 ~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~  283 (484)
T TIGR01438       250 EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK  283 (484)
T ss_pred             CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence              1 2434343   37899999999999987653

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.69  E-value=0.00019  Score=65.38  Aligned_cols=90  Identities=17%  Similarity=0.239  Sum_probs=67.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++++|||+|+.|+.+|..|..  .+.+|+++++.+.+..         .++........+.+++.|++++.++.+.. 
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~-  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR-  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC-
Confidence            47999999999999999999996  4889999998876432         13445555666788899999999987621 


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                           .  +...+ ....+|.|++|+|..+
T Consensus       386 -----~--~~~~~-l~~~~DaV~latGa~~  407 (639)
T PRK12809        386 -----D--ITFSD-LTSEYDAVFIGVGTYG  407 (639)
T ss_pred             -----c--CCHHH-HHhcCCEEEEeCCCCC
Confidence                 0  11111 1346899999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=97.66  E-value=0.00021  Score=64.28  Aligned_cols=94  Identities=20%  Similarity=0.298  Sum_probs=57.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||+.|+-+|..|.+ |.+|+++++...+..    .    .+.........+..  .++.++ ...+..+...
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~----~----d~~~~~~l~~~l~~--~gI~i~~~~~v~~i~~~  339 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR----E----DPAIGEAVTAAFRA--EGIEVLEHTQASQVAHV  339 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc----c----CHHHHHHHHHHHHH--CCCEEEcCCEEEEEEec
Confidence            4789999999999999999976 999999998543211    0    11111110111111  133433 3345555322


Q ss_pred             ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                          .+.++++ ++.+|.+++|+|..|+...
T Consensus       340 ~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~  369 (561)
T PRK13748        340 DGEFVLTTGHG-ELRADKLLVATGRAPNTRS  369 (561)
T ss_pred             CCEEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence                2333333 6999999999999987653

>PRK14727 putative mercuric reductase; Provisional

Probab=97.66  E-value=0.00022  Score=62.77  Aligned_cols=92  Identities=18%  Similarity=0.266  Sum_probs=57.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~   88 (290)
                      ..+++|||+|+.|+.+|..|++ |.+|+++++...+..    .    .+...    ..+.+.+  .++.++ ...+..+.
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~----~----d~~~~----~~l~~~L~~~GV~i~~~~~V~~i~  255 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR----E----DPLLG----ETLTACFEKEGIEVLNNTQASLVE  255 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc----c----hHHHH----HHHHHHHHhCCCEEEcCcEEEEEE
Confidence            3789999999999999999976 999999998543221    0    01110    1111111  133433 33444443


Q ss_pred             cc----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           89 EN----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        89 ~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      ..    .+...++ ++.+|.+++|+|..|+...
T Consensus       256 ~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~  287 (479)
T PRK14727        256 HDDNGFVLTTGHG-ELRAEKLLISTGRHANTHD  287 (479)
T ss_pred             EeCCEEEEEEcCC-eEEeCEEEEccCCCCCccC
Confidence            21    2333343 6889999999999987653

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.65  E-value=0.00026  Score=64.70  Aligned_cols=90  Identities=18%  Similarity=0.248  Sum_probs=65.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++|+|||+|+.|+.+|..|..  .+.+|+++++.+.+...         +...+.....+.+++.|++++.++.+.. 
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~-  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK-  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC-
Confidence            46899999999999999999986  58899999987654321         2345555566778889999999987621 


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                        +     +...+ ....+|.|++|+|...
T Consensus       403 --~-----i~~~~-~~~~~DavilAtGa~~  424 (654)
T PRK12769        403 --D-----ISLES-LLEDYDAVFVGVGTYR  424 (654)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence              0     11111 1246999999999754

>PTZ00058 glutathione reductase; Provisional

Probab=97.65  E-value=0.00014  Score=64.79  Aligned_cols=96  Identities=11%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||..|+.+|..|++ |.+|+++++++.+....       .+.........+.+  .++.++ ...+..+...
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~-------d~~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~  307 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKF-------DETIINELENDMKK--NNINIITHANVEEIEKV  307 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccC-------CHHHHHHHHHHHHH--CCCEEEeCCEEEEEEec
Confidence            5789999999999999999976 99999999987543111       11111110111111  123332 2334444321


Q ss_pred             -----eEEe-cCceEEeccEEEEccCCCCCCCC
Q 022896           91 -----EVLT-AEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        91 -----~v~~-~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                           .+.. .++.++.+|.|++|+|..|+...
T Consensus       308 ~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~  340 (561)
T PTZ00058        308 KEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED  340 (561)
T ss_pred             CCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence                 1222 33457999999999999987554

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.64  E-value=0.00056  Score=58.00  Aligned_cols=94  Identities=21%  Similarity=0.288  Sum_probs=62.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----cCChhHH------------------------------
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----FIGPKAG------------------------------  182 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----~~~~~~~------------------------------  182 (290)
                      .++|||+|..|+.+|..|.+..++.+|.++++.+.+.+     .....+.                              
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            47999999999999999987546889999998764322     1111111                              


Q ss_pred             --------HHHHHHH-HhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          183 --------DKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       183 --------~~~~~~~-~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                              ..+.+.+ ++.+..++.++.|+.+  +++++.+  .+|+++.+|.||.|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCC
Confidence                    0111222 2223336668888766  3444443  6888999999999999775

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.63  E-value=6.1e-05  Score=67.64  Aligned_cols=40  Identities=33%  Similarity=0.362  Sum_probs=34.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~   51 (290)
                      .++||+|||+|.+|+++|..+++ |++|+|+|+....++..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~   55 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT   55 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            36899999999999999999975 99999999988766543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.63  E-value=0.00024  Score=64.73  Aligned_cols=90  Identities=16%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++++|||+|+.|+.+|..|..  .+.+|+++++.+.+..         .....+.....+.+++.|++++.++.+. .
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C
Confidence            46899999999999999999986  4889999998765421         1234555666777888999999888651 1


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .       +...+. ...+|.|++|+|.++
T Consensus       269 d-------v~~~~~-~~~~DaVilAtGa~~  290 (652)
T PRK12814        269 D-------ITLEEL-QKEFDAVLLAVGAQK  290 (652)
T ss_pred             c-------cCHHHH-HhhcCEEEEEcCCCC
Confidence            1       111111 235999999999875

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.62  E-value=0.00077  Score=59.11  Aligned_cols=95  Identities=23%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC------Chh-----------------------------H
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI------GPK-----------------------------A  181 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~------~~~-----------------------------~  181 (290)
                      ..++|||+|+.|+.+|..++.  .+.+|.++++.+.+...-      +.+                             +
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~   81 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL   81 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence            479999999999999999987  489999999643322110      000                             0


Q ss_pred             H--------------HHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCC
Q 022896          182 G--------------DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       182 ~--------------~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~  236 (290)
                      .              ..+...++..+++++.+..  ++. +++.+.+...+|+  ++.+|.+|+|||.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~  149 (466)
T PRK06115         82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEPT  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence            0              1122233445677776542  122 2344566666664  6999999999999874

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.61  E-value=0.00049  Score=54.02  Aligned_cols=102  Identities=23%  Similarity=0.229  Sum_probs=71.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-------------------ChhHHHHHHHH----------
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------------------GPKAGDKTRDW----------  188 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-------------------~~~~~~~~~~~----------  188 (290)
                      +++|||+|..|+.+|..|..  .+.+|++++++......+                   ..++...+.+.          
T Consensus         3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W   80 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW   80 (331)
T ss_pred             cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence            68999999999999999997  599999999766543211                   00111111111          


Q ss_pred             --------------------------------HHhCCcEEEeCceEeecccCCCceeEEcCCCc-EEeccEEEEccCCCC
Q 022896          189 --------------------------------LISKKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPV  235 (290)
Q Consensus       189 --------------------------------~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~  235 (290)
                                                      +..-..++..++.|+++...++..++.+++|. ...+|.|++++...-
T Consensus        81 ~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ  160 (331)
T COG3380          81 TPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQ  160 (331)
T ss_pred             cccccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCc
Confidence                                            22235667889999999888888999886664 678999999988654


Q ss_pred             Cchhhc
Q 022896          236 GSDWLK  241 (290)
Q Consensus       236 ~~~~l~  241 (290)
                      ...+|.
T Consensus       161 ~~~LLt  166 (331)
T COG3380         161 TATLLT  166 (331)
T ss_pred             chhhcC
Confidence            455553

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=97.61  E-value=0.00015  Score=56.39  Aligned_cols=93  Identities=24%  Similarity=0.332  Sum_probs=61.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcE----------EE--eCceEeec
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD----------VK--LGERVNLD  205 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~----------~~--~~~~v~~i  205 (290)
                      +.+|+|||..|..+|..|+..++..++.++..++.. ...  .....+.+.+++..++          +.  .+. |  .
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~v-ksv--tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v--~   74 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV-KSV--TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-V--V   74 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH-HHH--hhHHHHHHHHHhcCccccchhhhcccHHHHHHh-h--h
Confidence            468999999999999999998899999988876532 110  1111222333333322          11  011 2  2


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .++...-.+.+.+|+.+.|+.+++|+|++|.
T Consensus        75 ~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk  105 (334)
T KOG2755|consen   75 TWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK  105 (334)
T ss_pred             hhccccceEEecCCceeeEEEEEEecCCCcc
Confidence            3344455678889999999999999999984

>PLN02785 Protein HOTHEAD

Probab=97.60  E-value=7.5e-05  Score=66.87  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=32.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      ..||+||||||.+|+.+|.+|.++.+|+|||++..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence            36999999999999999999988899999999874

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.56  E-value=1.3e-05  Score=60.08  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE   48 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~   48 (290)
                      ..||+|||||.+||++|+++.+   +.+|.+||..-..|
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            5899999999999999999962   89999999886554

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.54  E-value=0.0011  Score=63.39  Aligned_cols=101  Identities=19%  Similarity=0.087  Sum_probs=67.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-----------ChhHHHHHHHHHHhC-CcEEEeCceEe
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTRDWLISK-KVDVKLGERVN  203 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-gi~~~~~~~v~  203 (290)
                      ..+|+|||+|+.|+.+|..+..  .+.+|++++..+.+....           ..++...+.+.+++. +++++.++.+.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~  240 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF  240 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence            4689999999999999999986  589999999876543321           113334455566655 59999999886


Q ss_pred             ecccCCCceeEE-------------cCCC-cEEeccEEEEccCCCCCch
Q 022896          204 LDSVSEGSDTYL-------------TSTG-DTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       204 ~i~~~~~~~~v~-------------~~~g-~~~~~d~vv~a~G~~~~~~  238 (290)
                      .+........+.             ..+. .++.+|.||+|||..+...
T Consensus       241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~  289 (985)
T TIGR01372       241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL  289 (985)
T ss_pred             EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence            653311111110             0011 1588999999999987544

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.54  E-value=0.0011  Score=59.08  Aligned_cols=95  Identities=23%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc-cccc----------------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS-RLLE----------------------------------------  175 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~-~~~~----------------------------------------  175 (290)
                      -.|+|||+|..|+++|..++.  .+.+|.++++.. .+..                                        
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l   82 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML   82 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHH--cCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence            479999999999999998885  588898888762 1100                                        


Q ss_pred             -------------cCCh-hHHHHHHHHHHhC-CcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCC
Q 022896          176 -------------FIGP-KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       176 -------------~~~~-~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                                   .++. .+...+.+.+++. |++++ ...++++..+++. ..|.+.+|..+.++.||+|+|..
T Consensus        83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence                         0000 1233445555544 88886 4567776655555 55778889899999999999953

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.52  E-value=6.8e-05  Score=67.54  Aligned_cols=30  Identities=33%  Similarity=0.520  Sum_probs=28.3

Q ss_pred             EEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        16 vvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      |+|||+|.|||+||..+++ |.+|+|+||..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            6999999999999999986 99999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.52  E-value=0.00033  Score=63.47  Aligned_cols=36  Identities=11%  Similarity=0.158  Sum_probs=31.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ..+++|||||+.|+.+|..|.+ |.+|+++|+.+.+.
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll  348 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL  348 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence            4689999999999999999876 99999999987643

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.52  E-value=0.0001  Score=65.43  Aligned_cols=63  Identities=14%  Similarity=0.068  Sum_probs=46.4

Q ss_pred             HHHHHHHHhCCcEEEeCceEeecccCCCc---eeEEcCCC---c-EEeccEEEEccCCCCCchhhccccc
Q 022896          183 DKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTG---D-TINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       183 ~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~~~~g---~-~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      ..+...++..++++.+++.++.+..+++.   +.+...++   + ....+.||+|+|...++.+|..+++
T Consensus       207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi  276 (542)
T COG2303         207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI  276 (542)
T ss_pred             hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence            33445677788999999999999998887   33333333   2 3568999999998877777776664

>PRK06126 hypothetical protein; Provisional

Probab=97.50  E-value=0.0012  Score=59.23  Aligned_cols=55  Identities=20%  Similarity=0.206  Sum_probs=40.5

Q ss_pred             HHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEc---CCCc--EEeccEEEEccCCCCC
Q 022896          182 GDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       182 ~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~~  236 (290)
                      ...+.+.+++ .|+++++++++++++.+++++.+.+   .+|+  ++.+|.||.|.|..+.
T Consensus       129 ~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        129 EPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             HHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence            3344555554 4899999999999988777655543   3454  6899999999998753

>TIGR01810 betA choline dehydrogenase

Probab=97.47  E-value=0.00012  Score=65.35  Aligned_cols=62  Identities=11%  Similarity=-0.001  Sum_probs=43.0

Q ss_pred             HHHHHHhCCcEEEeCceEeecccCCCc-eeEEcC-CCc---EEeccEEEEccCCCCCchhhcccccc
Q 022896          185 TRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS-TGD---TINADCHFLCTGKPVGSDWLKDTILK  246 (290)
Q Consensus       185 ~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~-~g~---~~~~d~vv~a~G~~~~~~~l~~~~~~  246 (290)
                      +....++.|++++.++.|+++..+++. ..|+.. +++   .+.++.||+|.|..-.+.+|..++++
T Consensus       200 l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG  266 (532)
T TIGR01810       200 LHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG  266 (532)
T ss_pred             hhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence            444444678999999999999887554 334332 222   35799999999986567777666653

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00053  Score=63.78  Aligned_cols=90  Identities=17%  Similarity=0.269  Sum_probs=70.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++|.|||+|++|+.+|.+|..  .+..|++++|.++....         +++.+.+.=.+.+.+.||+|+.+++|-.-
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence            47999999999999999999986  69999999999987542         34456666677889999999999887211


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                              +. -|+-.-+.|.+|+|+|+..
T Consensus      1862 --------vs-~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred             --------cc-HHHHhhccCeEEEEeCCCC
Confidence                    11 1333457899999999753

>PLN02546 glutathione reductase

Probab=97.39  E-value=0.00044  Score=61.65  Aligned_cols=95  Identities=14%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeec-
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITE-   89 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~-   89 (290)
                      ..+++|||||+.|+.+|..|.. +.+|+++++.+.+...+       .+.........+..  .+++++ ...+..+.. 
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~-------d~~~~~~l~~~L~~--~GV~i~~~~~v~~i~~~  322 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF-------DEEVRDFVAEQMSL--RGIEFHTEESPQAIIKS  322 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccccc-------CHHHHHHHHHHHHH--CCcEEEeCCEEEEEEEc
Confidence            4789999999999999999976 99999999877542111       11100000001111  133333 233444432 


Q ss_pred             --c--eEEecCceEEeccEEEEccCCCCCCC
Q 022896           90 --N--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        90 --~--~v~~~~~~~~~~~~vi~a~G~~~~~p  116 (290)
                        .  .+...++....+|.+++|+|..|+..
T Consensus       323 ~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        323 ADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             CCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence              1  23333444445899999999998765

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.38  E-value=0.001  Score=59.79  Aligned_cols=90  Identities=22%  Similarity=0.378  Sum_probs=64.4

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceE-e
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERV-N  203 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v-~  203 (290)
                      ..+++|+|+|+|+.|+.+|..+..  .+.+|+++++.+.+...         +..+....-.+.+++.|+++..++.+ .
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~  212 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE  212 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence            467999999999999999999986  47889999977654321         23344555556778899999988766 3


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+..+.          ....+|.|++|+|.+.
T Consensus       213 ~~~~~~----------~~~~~D~Vi~AtG~~~  234 (564)
T PRK12771        213 DITLEQ----------LEGEFDAVFVAIGAQL  234 (564)
T ss_pred             cCCHHH----------HHhhCCEEEEeeCCCC
Confidence            222110          1124899999999875

>PRK13984 putative oxidoreductase; Provisional

Probab=97.37  E-value=0.00086  Score=60.84  Aligned_cols=89  Identities=26%  Similarity=0.269  Sum_probs=65.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++++|||+|+.|+.+|..|..  .+.+|+++++.+.....         +..++.....+.+++.|++++.++.+.. 
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  358 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK-  358 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC-
Confidence            57889999999999999999986  48899999887654221         2234445556778889999999988731 


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                        +     +...+ ....+|.||+|+|..
T Consensus       359 --~-----~~~~~-~~~~yD~vilAtGa~  379 (604)
T PRK13984        359 --D-----IPLEE-LREKHDAVFLSTGFT  379 (604)
T ss_pred             --c-----CCHHH-HHhcCCEEEEEcCcC
Confidence              1     11111 135799999999976

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.37  E-value=0.00099  Score=53.55  Aligned_cols=103  Identities=22%  Similarity=0.353  Sum_probs=66.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhH---HHHHHHH---------HHhCCcEEEeCceE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA---GDKTRDW---------LISKKVDVKLGERV  202 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~gi~~~~~~~v  202 (290)
                      .--+++|+|||..|+.+|..+....+..+|.++++.+.-  .++|.+   ...++..         +--.|.+++. ..|
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H--yYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv  114 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH--YYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKV  114 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc--ccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHH
Confidence            346899999999999999999887777889999876542  111110   0001100         0111222221 233


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      +  +.++++.++.+.+|++|.+|.+|+|+|.+-+.+.++.
T Consensus       115 ~--~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkG  152 (446)
T KOG3851|consen  115 K--EFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKG  152 (446)
T ss_pred             H--hcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence            2  3456667788899999999999999999876666554

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.33  E-value=0.0039  Score=55.60  Aligned_cols=95  Identities=20%  Similarity=0.223  Sum_probs=64.0

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------------cc-----------------------
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------------EF-----------------------  176 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------------------~~-----------------------  176 (290)
                      .++|+|+|..|+++|..++.  .+.+|.++++.....                  ..                       
T Consensus         2 DViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln   79 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN   79 (617)
T ss_pred             eEEEECccHHHHHHHHHHHH--CCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence            58899999999999998886  477787777542100                  00                       


Q ss_pred             -------------CCh-hHHHHHHHHHHhC-CcEEEeCceEeecccC-CC-ceeEEcCCCcEEeccEEEEccCCCC
Q 022896          177 -------------IGP-KAGDKTRDWLISK-KVDVKLGERVNLDSVS-EG-SDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       177 -------------~~~-~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~-~~-~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                                   +++ .+...+.+.+++. |++++.+ .+..+..+ ++ ...|.+.+|..+.|+.||+|+|...
T Consensus        80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                         000 1223455666665 7888766 45555443 33 3677888888999999999999884

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.31  E-value=0.0041  Score=53.29  Aligned_cols=99  Identities=13%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--cc--------------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EF--------------------------------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~--~~--------------------------------------  176 (290)
                      .+|+|||+|+.|+-+|..|.+  .+.+|+++++.+...  ..                                      
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   80 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD   80 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence            579999999999999999986  488888888765310  00                                      


Q ss_pred             -------C-------------ChhHHHHHHHHHHhCCcEEEeCceEeeccc-CCCceeEEcC-CCc--EEeccEEEEccC
Q 022896          177 -------I-------------GPKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLTS-TGD--TINADCHFLCTG  232 (290)
Q Consensus       177 -------~-------------~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~-~~~~~~v~~~-~g~--~~~~d~vv~a~G  232 (290)
                             +             ...+...+.+.+.+.|++++.+..+..+.. +++...+.+. +|+  ++++|.||-|-|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG  160 (390)
T TIGR02360        81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDG  160 (390)
T ss_pred             CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCC
Confidence                   0             012234455666667888888887655533 4445556554 665  689999999999


Q ss_pred             CCCCc
Q 022896          233 KPVGS  237 (290)
Q Consensus       233 ~~~~~  237 (290)
                      ..+..
T Consensus       161 ~~S~V  165 (390)
T TIGR02360       161 FHGVS  165 (390)
T ss_pred             Cchhh
Confidence            87543

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.29  E-value=0.0009  Score=57.88  Aligned_cols=89  Identities=21%  Similarity=0.301  Sum_probs=68.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+++|+|||+|+.++.+|..|+.  .+..|+++.+.+.....         +..++.....+.|++.|++|+.++.+-. 
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~-  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR-  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC-
Confidence            46999999999999999999996  59999999887765432         3457778888999999999999998721 


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                           .  ++.+ .-.-++|.|++++|..
T Consensus       199 -----~--it~~-~L~~e~Dav~l~~G~~  219 (457)
T COG0493         199 -----D--ITLE-ELLKEYDAVFLATGAG  219 (457)
T ss_pred             -----c--CCHH-HHHHhhCEEEEecccc
Confidence                 1  1111 1123469999999964

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.23  E-value=0.00048  Score=59.64  Aligned_cols=94  Identities=31%  Similarity=0.398  Sum_probs=25.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------------------
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------------------------------------  176 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------------------------------------  176 (290)
                      .|+|||+|..|+-+|..++.  .+.+|.++++.+.+...                                         
T Consensus         1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~   78 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR   78 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred             CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence            48999999999999998886  59999999977653210                                         


Q ss_pred             --------CCh-hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcC--CC-cEEeccEEEEccCC
Q 022896          177 --------IGP-KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS--TG-DTINADCHFLCTGK  233 (290)
Q Consensus       177 --------~~~-~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~--~g-~~~~~d~vv~a~G~  233 (290)
                              +++ .+...+.+.+++.|+++++++.+..+..+++. ..|...  +| .++.++.+|-|||-
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    001 11223556667789999999999999887755 333333  34 47999999999993

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.22  E-value=0.007  Score=51.98  Aligned_cols=95  Identities=20%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------------c-----------------------------
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------------F-----------------------------  176 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~------------~-----------------------------  176 (290)
                      +|+|||+|+.|..+|..++.  .+.+|.++++......            .                             
T Consensus         2 ~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~   79 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLAS--AGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGR   79 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEecc
Confidence            68999999999999998886  4778888876532100            0                             


Q ss_pred             ----------C-ChhHHHHHHHHHHhCCcEEEeCceEeeccc---CCCceeEEc--CC-----C--cEEeccEEEEccCC
Q 022896          177 ----------I-GPKAGDKTRDWLISKKVDVKLGERVNLDSV---SEGSDTYLT--ST-----G--DTINADCHFLCTGK  233 (290)
Q Consensus       177 ----------~-~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~---~~~~~~v~~--~~-----g--~~~~~d~vv~a~G~  233 (290)
                                + ...+.+.+.+.+.+.|++++.++ +..++.   .++...+..  .+     |  .++.++.||.|.|.
T Consensus        80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~  158 (398)
T TIGR02028        80 TLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGA  158 (398)
T ss_pred             CCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCc
Confidence                      0 01233346666777899998775 554532   223334432  21     3  37899999999997


Q ss_pred             CC
Q 022896          234 PV  235 (290)
Q Consensus       234 ~~  235 (290)
                      .+
T Consensus       159 ~S  160 (398)
T TIGR02028       159 NS  160 (398)
T ss_pred             ch
Confidence            65

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.22  E-value=0.00045  Score=55.88  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+|++|||||.+||-+|.+|+. |.+|+|+|.+..
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            6899999999999999999985 999999998763

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.22  E-value=0.00037  Score=61.28  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~   47 (290)
                      ...||.||||||.||..+|..|.+  ..+|+|+|++...
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            457999999999999999999987  5999999998765

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.12  E-value=0.0018  Score=60.44  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~  170 (290)
                      .+++|+|||+|+.|+.+|..|..  .+.+|+++++.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence            57899999999999999999996  59999999974

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.11  E-value=0.0057  Score=46.81  Aligned_cols=100  Identities=20%  Similarity=0.120  Sum_probs=65.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-------------------------------------
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------------------------------------  177 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-------------------------------------  177 (290)
                      ....++|+|+|++|+.+|..|++.  +.+|.+++++..+....                                     
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~   93 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA   93 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred             ccCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence            457899999999999999999985  99999999776543210                                     


Q ss_pred             -ChhHHHHHHHHHHhCCcEEEeCceEeecccCCC-c-eeEEc------CCC-----cEEeccEEEEccCCCCC
Q 022896          178 -GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S-DTYLT------STG-----DTINADCHFLCTGKPVG  236 (290)
Q Consensus       178 -~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~-~~v~~------~~g-----~~~~~d~vv~a~G~~~~  236 (290)
                       ..++...+.....+.|++++..+.++++-..++ . ..+..      ..|     -.+++..||-|||+...
T Consensus        94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen   94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence             113444455566668999999999988876553 3 22221      222     27899999999998764

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.07  E-value=0.00021  Score=56.40  Aligned_cols=41  Identities=34%  Similarity=0.574  Sum_probs=34.1

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-------CCcEEEEcCCCCcccc
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEYFEIT   50 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-------g~~v~vie~~~~~~~~   50 (290)
                      +.+.++++|||||+.|.++|++|.+       .+++++||+....++.
T Consensus         7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga   54 (380)
T KOG2852|consen    7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA   54 (380)
T ss_pred             cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence            3446999999999999999999953       2799999998876544

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.06  E-value=0.013  Score=51.11  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------------------------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------------------------------  175 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------------------------------------  175 (290)
                      .-+|+|||+|+.|.-+|..++.  .+.+|.++++......                                        
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~  116 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI  116 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEe
Confidence            3578888888888888888875  4777877775532100                                        


Q ss_pred             --------c---C-ChhHHHHHHHHHHhCCcEEEeCceEeecccC---CCceeEEcCC-------C--cEEeccEEEEcc
Q 022896          176 --------F---I-GPKAGDKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLTST-------G--DTINADCHFLCT  231 (290)
Q Consensus       176 --------~---~-~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~---~~~~~v~~~~-------g--~~~~~d~vv~a~  231 (290)
                              .   . ...+.+.+.+.+.+.|++++.+ .++++..+   ++.+.+.+.+       |  .++.+|.||-|.
T Consensus       117 ~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD  195 (450)
T PLN00093        117 GKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD  195 (450)
T ss_pred             cccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence                    0   0 1124445666777889999866 46555532   2334444321       3  479999999999


Q ss_pred             CCCC
Q 022896          232 GKPV  235 (290)
Q Consensus       232 G~~~  235 (290)
                      |...
T Consensus       196 G~~S  199 (450)
T PLN00093        196 GANS  199 (450)
T ss_pred             Ccch
Confidence            9754

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.012  Score=50.32  Aligned_cols=37  Identities=16%  Similarity=0.350  Sum_probs=28.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRL  173 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~~  173 (290)
                      .+|+|||+|.+|+.+|..|.+..... .+.++++.+.+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            57999999999999999987643333 38888876654

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.99  E-value=0.0076  Score=50.60  Aligned_cols=100  Identities=15%  Similarity=0.146  Sum_probs=69.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--cC---------ChhHHHHHHHHHHhC--CcEEEeCce
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--FI---------GPKAGDKTRDWLISK--KVDVKLGER  201 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~--gi~~~~~~~  201 (290)
                      ..++|+|+|+|-.|..+...|..  .-.+|+++.++..|+-  .+         .+.+.+.+....+..  +++++ ..+
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldt--s~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAe  130 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDT--SLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAE  130 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccc--cccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecc
Confidence            57899999999999999988875  5778999998877631  11         235666777777666  34444 334


Q ss_pred             EeecccCCCceeE--EcCCC----cEEeccEEEEccCCCCCc
Q 022896          202 VNLDSVSEGSDTY--LTSTG----DTINADCHFLCTGKPVGS  237 (290)
Q Consensus       202 v~~i~~~~~~~~v--~~~~g----~~~~~d~vv~a~G~~~~~  237 (290)
                      -..++.+.+.+..  .+.++    -.+.||.+|+|+|..+++
T Consensus       131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T  172 (491)
T KOG2495|consen  131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT  172 (491)
T ss_pred             cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence            4445555555443  33444    368899999999999875

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.99  E-value=0.015  Score=53.02  Aligned_cols=101  Identities=24%  Similarity=0.325  Sum_probs=68.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------------------------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------------------------------  175 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------------------------------------  175 (290)
                      ..+|+|||+|++|+-+|..|..+ .+.++.++++.+....                                        
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~-~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~  110 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD  110 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcC-CCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence            46899999999999999999851 3778888875432100                                        


Q ss_pred             ------------------c--------C-ChhHHHHHHHHHHhCC--cEEEeCceEeecccCCC---ceeEEcC------
Q 022896          176 ------------------F--------I-GPKAGDKTRDWLISKK--VDVKLGERVNLDSVSEG---SDTYLTS------  217 (290)
Q Consensus       176 ------------------~--------~-~~~~~~~~~~~~~~~g--i~~~~~~~v~~i~~~~~---~~~v~~~------  217 (290)
                                        .        . ...+...+.+.+.+.+  +++..++.+++++.++.   .+++++.      
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~  190 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH  190 (634)
T ss_pred             CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence                              0        0 0123444566666665  57888999988876542   3555543      


Q ss_pred             CC--cEEeccEEEEccCCCCCc
Q 022896          218 TG--DTINADCHFLCTGKPVGS  237 (290)
Q Consensus       218 ~g--~~~~~d~vv~a~G~~~~~  237 (290)
                      +|  +++.+|.||-|-|.++..
T Consensus       191 ~g~~~tv~A~~lVGaDGa~S~V  212 (634)
T PRK08294        191 EGEEETVRAKYVVGCDGARSRV  212 (634)
T ss_pred             CCceEEEEeCEEEECCCCchHH
Confidence            35  479999999999987644

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.97  E-value=0.00035  Score=59.94  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-cCCcEEEEcCCCCcccchh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-~g~~v~vie~~~~~~~~~~   52 (290)
                      ..+||+|||||..|..||.-.+ ||+++.++|+++...+..+
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS  107 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence            3599999999999999999986 7999999999997665543

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.96  E-value=0.00079  Score=55.96  Aligned_cols=32  Identities=34%  Similarity=0.535  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-----CCcEEEEcCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPK   44 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-----g~~v~vie~~   44 (290)
                      .+||+||||||+|++.|..|+.     ..+|+++|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            6999999999999999999963     5899999987

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.94  E-value=0.0008  Score=57.64  Aligned_cols=55  Identities=11%  Similarity=-0.099  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ++.+.+-+...-.|..+..++.|.++..++++  ..+. .+|+++.|+.||....+-|
T Consensus       233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~dpsy~p  289 (438)
T PF00996_consen  233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGDPSYLP  289 (438)
T ss_dssp             HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEEGGGBG
T ss_pred             cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEECCccCc
Confidence            88889998888999999999999999875544  3334 4888999999998877665

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.93  E-value=0.012  Score=53.53  Aligned_cols=101  Identities=19%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHH--------------------
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDK--------------------  184 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~--------------------  184 (290)
                      ....+|+|||+|..|+-+|..|.+  .+.+|+++++.+....         .+.+...+.                    
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~  156 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITG  156 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccc
Confidence            456889999999999999999997  4889999997642100         011100000                    


Q ss_pred             ---------------------------------------HHHHHHh-CCcE-EEeCceEeecccCCCceeEEcCCCcEEe
Q 022896          185 ---------------------------------------TRDWLIS-KKVD-VKLGERVNLDSVSEGSDTYLTSTGDTIN  223 (290)
Q Consensus       185 ---------------------------------------~~~~~~~-~gi~-~~~~~~v~~i~~~~~~~~v~~~~g~~~~  223 (290)
                                                             +.+.|.+ .+.+ ++.+++|++++.+++.+.+.+.+|+++.
T Consensus       157 ~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~  236 (668)
T PLN02927        157 DRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYE  236 (668)
T ss_pred             ceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence                                                   1111111 1111 3456677777666667778888888899


Q ss_pred             ccEEEEccCCCCC
Q 022896          224 ADCHFLCTGKPVG  236 (290)
Q Consensus       224 ~d~vv~a~G~~~~  236 (290)
                      +|.||.|-|.+..
T Consensus       237 aDlVVGADG~~S~  249 (668)
T PLN02927        237 GDLLVGADGIWSK  249 (668)
T ss_pred             cCEEEECCCCCcH
Confidence            9999999998753

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.92  E-value=0.0012  Score=58.14  Aligned_cols=33  Identities=42%  Similarity=0.504  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+++|||+|.+|+++|..|++ |.+|+++|+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999975 99999999765

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.92  E-value=0.0029  Score=53.86  Aligned_cols=83  Identities=24%  Similarity=0.182  Sum_probs=64.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-------Ch------hHHHHHHHHHHhCCcEEEeCce
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------GP------KAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      ..++++|||||.+|++.|..|++  .+.+++++++.+.+...+       +.      -+...+.+.....+|++++.++
T Consensus       123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae  200 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAE  200 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeee
Confidence            35899999999999999999997  599999999988775431       11      1334455555667999999999


Q ss_pred             EeecccCCCceeEEcCCC
Q 022896          202 VNLDSVSEGSDTYLTSTG  219 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g  219 (290)
                      |++++.+-+.+++.....
T Consensus       201 V~ev~G~vGnF~vki~kk  218 (622)
T COG1148         201 VEEVSGSVGNFTVKIEKK  218 (622)
T ss_pred             eeeecccccceEEEEecc
Confidence            999988888877765443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.86  E-value=0.0012  Score=51.79  Aligned_cols=33  Identities=36%  Similarity=0.587  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++++|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            479999999999999999976 999999999874

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.83  E-value=0.0018  Score=54.04  Aligned_cols=104  Identities=19%  Similarity=0.274  Sum_probs=68.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHH-------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT-------------------------------  185 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------------------------------  185 (290)
                      -..+|+|+|..++.....+....+..++-++...+.. +++.|.+++.+                               
T Consensus       179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepel-PYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F  257 (659)
T KOG1346|consen  179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL-PYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF  257 (659)
T ss_pred             CceeEEcCCchhhhcccccccCCCCceEEeeccCccC-cccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence            3578999998887777777765566666666544332 22222222221                               


Q ss_pred             ------HHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc-hhhccc
Q 022896          186 ------RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS-DWLKDT  243 (290)
Q Consensus       186 ------~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~-~~l~~~  243 (290)
                            .......||.+..+.++..+...+  ..|.++||.+|.||.+++|||..|.. +.++..
T Consensus       258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d--~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A  320 (659)
T KOG1346|consen  258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEED--KKVILNDGTTIGYDKCLIATGVRPKKLQVFEEA  320 (659)
T ss_pred             eeChhHCcccccCceEEEeccceEEeeccc--CeEEecCCcEeehhheeeecCcCcccchhhhhc
Confidence                  122344688999999996555444  45677899999999999999998853 444443

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=96.83  E-value=0.0045  Score=51.10  Aligned_cols=55  Identities=20%  Similarity=0.222  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-----eeE-EcCCCcEEe---ccEEEEccCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-----DTY-LTSTGDTIN---ADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-----~~v-~~~~g~~~~---~d~vv~a~G~~  234 (290)
                      .+...+...|+++||++.++.+|+.++++...     ..+ ...+++.++   -|.|++..|+.
T Consensus       228 SlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsi  291 (587)
T COG4716         228 SLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSI  291 (587)
T ss_pred             HHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence            67788999999999999999999999876443     111 356666554   57777766653

>PLN02985 squalene monooxygenase

Probab=96.78  E-value=0.028  Score=49.97  Aligned_cols=56  Identities=23%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhC-CcEEEeCceEeecccCCCc---eeEEcCCCcE--EeccEEEEccCCCCCc
Q 022896          181 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGS---DTYLTSTGDT--INADCHFLCTGKPVGS  237 (290)
Q Consensus       181 ~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~---~~v~~~~g~~--~~~d~vv~a~G~~~~~  237 (290)
                      +...+.+.+++. |++++.++ ++++..+++.   +.+...+|++  +.+|.+|.|.|..+..
T Consensus       149 l~~~L~~~a~~~~~V~i~~gt-vv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~v  210 (514)
T PLN02985        149 FVQRLRQKASSLPNVRLEEGT-VKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNL  210 (514)
T ss_pred             HHHHHHHHHHhCCCeEEEeee-EEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHH
Confidence            445556666554 78888664 4444433332   3334456653  5689999999987643

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0041  Score=50.74  Aligned_cols=99  Identities=26%  Similarity=0.269  Sum_probs=71.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-----------ccc---cccCChhHHHHHHHHHHhCCcEEEeCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-----------SRL---LEFIGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      ..-.|+|+|+|+.|...|-+.+.  .+.+..++..+           +.+   ...-.+++...+.+..++..++++...
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~q  287 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQ  287 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHh--hcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhh
Confidence            45789999999999888876653  34443332210           011   112356899999999999999998777


Q ss_pred             eEeecccC---CCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          201 RVNLDSVS---EGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       201 ~v~~i~~~---~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+.++..   ++-..+++.+|-.+++..+|++||.+.
T Consensus       288 ra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW  325 (520)
T COG3634         288 RASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW  325 (520)
T ss_pred             hhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence            76666553   334888999999999999999999754

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.73  E-value=0.0098  Score=49.60  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++.|||.|..||+.|.-|++ ||+|+.+|.++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            579999999999999999987 99999999876

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.73  E-value=0.0097  Score=55.55  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=29.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      +|+|||+|+.|+-+|..|..+.++.+|+++++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            68999999999999998887445789999997764

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.73  E-value=0.01  Score=49.18  Aligned_cols=90  Identities=19%  Similarity=0.124  Sum_probs=66.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------CChhHHHHHHHHHHhCCcEEEeCceE-ee
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------IGPKAGDKTRDWLISKKVDVKLGERV-NL  204 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gi~~~~~~~v-~~  204 (290)
                      ..+|-|||+|+.|+-.|..|..+.++.+|+++++.+.+...          ..+...+.+.+.++.....+..+.+| +.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~d   99 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRD   99 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceeccc
Confidence            34899999999999999998876678999999988765331          12345667888888888998888777 22


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      +...          .-+-.+|.||+|.|...
T Consensus       100 vsl~----------eL~~~ydavvLaYGa~~  120 (468)
T KOG1800|consen  100 VSLK----------ELTDNYDAVVLAYGADG  120 (468)
T ss_pred             ccHH----------HHhhcccEEEEEecCCC
Confidence            2211          11356899999998753

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.72  E-value=0.0014  Score=54.01  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=63.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceE-Eeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRI-VASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~v~~~   87 (290)
                      -..+.+|||||..||..+.--.+ |.+||++|-.+..++...       .+...    .+...+  ++..| +.++|..+
T Consensus       210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD-------~Eisk----~~qr~L~kQgikF~l~tkv~~a  278 (506)
T KOG1335|consen  210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD-------GEISK----AFQRVLQKQGIKFKLGTKVTSA  278 (506)
T ss_pred             CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC-------HHHHH----HHHHHHHhcCceeEeccEEEEe
Confidence            35899999999999999988877 999999999887664421       11111    111111  23333 35566665


Q ss_pred             ecc-----eEEec-----CceEEeccEEEEccCCCCCCCCc
Q 022896           88 TEN-----EVLTA-----EGRRVVYDYLVIATGHKDPVPKT  118 (290)
Q Consensus        88 ~~~-----~v~~~-----~~~~~~~~~vi~a~G~~~~~p~~  118 (290)
                      .+.     .+.+.     ....+++|.+.+|+|-+|...+.
T Consensus       279 ~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GL  319 (506)
T KOG1335|consen  279 TRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGL  319 (506)
T ss_pred             eccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCC
Confidence            543     22222     23478999999999999988773

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.71  E-value=0.0066  Score=52.04  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=29.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      +|+|||+|..|+++|..|+.  .+.+|+++++.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCcEEEEeccccc
Confidence            68999999999999999986  48999999976553

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.69  E-value=0.0079  Score=52.21  Aligned_cols=95  Identities=24%  Similarity=0.246  Sum_probs=63.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------------------------------------  175 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----------------------------------------  175 (290)
                      ..|+|||+|..|+|+|...+.  .+.++.++........                                         
T Consensus         5 ~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L   82 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML   82 (621)
T ss_pred             CceEEECCCccchHHHHhhhc--cCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence            579999999999999987774  6877777653222100                                         


Q ss_pred             -------------cCCh-hHHHHHHHHHHh-CCcEEEeCceEeecccCCC--ceeEEcCCCcEEeccEEEEccCCC
Q 022896          176 -------------FIGP-KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       176 -------------~~~~-~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                                   ..+. .+...+++.++. .++.++.++ |.++..+++  ...|.+.+|..+.|+.||++||.-
T Consensus        83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445          83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence                         0011 123334444443 478877654 444555444  388899999999999999999863

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.69  E-value=0.0051  Score=52.51  Aligned_cols=56  Identities=13%  Similarity=0.140  Sum_probs=49.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++ |++++.++.|++++.+++.+.+.+.+|+.+.+|.||+|+|.+.
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence            4678888888888 9999999999999877777888888887799999999999875

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.64  E-value=0.002  Score=47.54  Aligned_cols=31  Identities=35%  Similarity=0.461  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +|.|||||..|.++|..|+. |++|+++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999975 99999999986

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.63  E-value=0.0025  Score=43.25  Aligned_cols=34  Identities=44%  Similarity=0.609  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..++++|||||..|..-+..|.+ |.+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            35899999999999999999976 99999999975

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.57  E-value=0.0024  Score=56.03  Aligned_cols=33  Identities=27%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      +|+|||.|++|+++|+.|.+ |++|+++|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            58999999999999999975 9999999987653

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.50  E-value=0.039  Score=47.76  Aligned_cols=56  Identities=21%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeE--E-cCCCc--EEeccEEEEccCCCCC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTY--L-TSTGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v--~-~~~g~--~~~~d~vv~a~G~~~~  236 (290)
                      +...+.+.+++.|++++.++.++++..+++. ..+  . ..+|+  .+.++.||+|+|-...
T Consensus       143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  143 LIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            5666788889999999999999999887665 233  3 24554  5789999999996544

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.50  E-value=0.0058  Score=51.16  Aligned_cols=100  Identities=18%  Similarity=0.153  Sum_probs=56.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--C--------------------------------------
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--I--------------------------------------  177 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--~--------------------------------------  177 (290)
                      .++.||.|+..+.+|..+.+. ...++.++++.+.+...  +                                      
T Consensus         4 D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~   82 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLY   82 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HH
T ss_pred             eEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChh
Confidence            578999999999999998875 35788888876654210  0                                      


Q ss_pred             -----------ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc----eeEEcC----CCcEEeccEEEEccCCCCCch
Q 022896          178 -----------GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS----DTYLTS----TGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       178 -----------~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~----~~v~~~----~g~~~~~d~vv~a~G~~~~~~  238 (290)
                                 ..++.+.+.-.+++.+-.+.++..|++|+...+.    +.|.+.    +++++.++.||+++|..|..|
T Consensus        83 ~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   83 EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred             hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence                       0022222322233345448889999999876553    666652    346899999999999877643

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.48  E-value=0.0042  Score=47.91  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+|+|||||.+|..-+..|.+ |.+|+|++++.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            5799999999999999999976 99999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.41  E-value=0.023  Score=49.75  Aligned_cols=83  Identities=22%  Similarity=0.254  Sum_probs=59.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  214 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v  214 (290)
                      .+++++|+|+|..|..+|..|.+  .+.+|+++++....      .+ ....+.+.+.|++++.+....           
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~~------~~-~~~~~~l~~~~~~~~~~~~~~-----------   63 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEED------QL-KEALEELGELGIELVLGEYPE-----------   63 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchH------HH-HHHHHHHHhcCCEEEeCCcch-----------
Confidence            46899999999999999999997  48999998876421      22 333345667788876655432           


Q ss_pred             EcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          215 LTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       215 ~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                          ...-.+|.||.++|..++.+.+.
T Consensus        64 ----~~~~~~d~vv~~~g~~~~~~~~~   86 (450)
T PRK14106         64 ----EFLEGVDLVVVSPGVPLDSPPVV   86 (450)
T ss_pred             ----hHhhcCCEEEECCCCCCCCHHHH
Confidence                01125899999999888766554

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.39  E-value=0.0036  Score=52.05  Aligned_cols=46  Identities=33%  Similarity=0.527  Sum_probs=40.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM   57 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~   57 (290)
                      ..+|+||||-|..=-..|....+ |.+|+=+|+++++|+.|..+...
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            46999999999998888888877 99999999999999999876543

>PRK07121 hypothetical protein; Validated

Probab=96.36  E-value=0.082  Score=46.87  Aligned_cols=62  Identities=15%  Similarity=0.111  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCC-c-eeEEc-CCCc--EEec-cEEEEccCCC-CCchhhc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S-DTYLT-STGD--TINA-DCHFLCTGKP-VGSDWLK  241 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~-~~v~~-~~g~--~~~~-d~vv~a~G~~-~~~~~l~  241 (290)
                      .+...+.+.+++.|++++.++.++++..+++ . ..+.. .+++  .+.+ +.||+|+|-. .|.+++.
T Consensus       178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence            4666777888889999999999999876543 3 33332 2333  5778 9999999953 3444443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.34  E-value=0.0066  Score=44.63  Aligned_cols=33  Identities=42%  Similarity=0.544  Sum_probs=28.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (290)
                      ...+|+|||||..|..-|..|.+ |++|+|+++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            46899999999999999999864 9999999643

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.32  E-value=0.019  Score=48.56  Aligned_cols=56  Identities=21%  Similarity=0.124  Sum_probs=45.5

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC-cEEeccEEEEccCCCC
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPV  235 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~  235 (290)
                      ...+.+.+...+++.||++++++.|+.+  ++++..+.+.++ +.+.+|.||+|+|-.+
T Consensus        85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            3478889999999999999999999988  344566665443 4699999999999865

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.27  E-value=0.069  Score=48.32  Aligned_cols=54  Identities=15%  Similarity=0.014  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHh-CCcEEEeCceEeecccCCCcee----EEcCCCc--EEeccEEEEccCCC
Q 022896          181 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT----YLTSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       181 ~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~----v~~~~g~--~~~~d~vv~a~G~~  234 (290)
                      +...+.+.+.+ .+|+++.++.++++..+++.+.    +...+|+  .+.++.||+|+|-.
T Consensus       135 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  195 (582)
T PRK09231        135 MLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  195 (582)
T ss_pred             HHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence            33444444444 4799999999988876555432    2345664  68899999999853

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.27  E-value=0.0048  Score=46.56  Aligned_cols=32  Identities=34%  Similarity=0.428  Sum_probs=27.0

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +|.|||+|..|...|..+.. |++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            48999999999999999975 999999999774

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.22  E-value=0.087  Score=47.63  Aligned_cols=54  Identities=20%  Similarity=0.022  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHh-CCcEEEeCceEeecccCCCce-e---EEcCCCc--EEeccEEEEccCCC
Q 022896          181 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-T---YLTSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       181 ~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~---v~~~~g~--~~~~d~vv~a~G~~  234 (290)
                      +...+.+.+.+ .+|+++.++.++++..+++.+ .   +...+|+  .+.++.||+|+|-.
T Consensus       134 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  194 (580)
T TIGR01176       134 MLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGA  194 (580)
T ss_pred             HHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence            44445555544 478999999888877655542 2   2334664  67899999999853

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08275 putative oxidoreductase; Provisional

Probab=96.17  E-value=0.12  Score=46.61  Aligned_cols=56  Identities=20%  Similarity=0.167  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEE---cCCCc--EEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYL---TSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~---~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++.++++..+ ++. ..+.   ..+|+  .+.++.||+|||-..
T Consensus       138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            46677788888899999999999998765 333 2232   34564  578999999999754

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.12  E-value=0.018  Score=48.14  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=48.1

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCC
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ...+...+.+.+++.|++++.+++|+.++.+++.+ .+.+.+| ++.+|.||+|+|.+.
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA  193 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence            44788899999999999999999999998766653 4666666 799999999999875

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.09  E-value=0.0078  Score=49.89  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++|+|||+|..|...|..|++ |++|+++.|+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4689999999999999999986 99999999965

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.09  E-value=0.0093  Score=45.89  Aligned_cols=33  Identities=39%  Similarity=0.627  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (290)
                      ..++++|||||-.|...|..|.+ |++|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            35899999999999999999865 9999999874

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.09  E-value=0.0076  Score=52.71  Aligned_cols=33  Identities=48%  Similarity=0.675  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++++|||+|.+|+++|..|.+ |++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5889999999999999999975 99999999975

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.09  E-value=0.065  Score=46.20  Aligned_cols=54  Identities=19%  Similarity=0.145  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCC-ce-eEEc--CCC--cEEeccEEEEccCC
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEG-SD-TYLT--STG--DTINADCHFLCTGK  233 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~-~~-~v~~--~~g--~~~~~d~vv~a~G~  233 (290)
                      .+...+.+..++ .+|+++.++.+.++..+++ .+ .+..  .++  .++.++.||+|||-
T Consensus       134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG  194 (518)
T COG0029         134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG  194 (518)
T ss_pred             HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence            344445566655 6999999988887877777 33 3332  323  46789999999984

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.08  E-value=0.033  Score=46.72  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      ..+|+|+|||..|+-.|..+..  .+.++.+++.++.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeeccc
Confidence            3589999999999999999986  6889988886544

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.08  E-value=0.0041  Score=47.14  Aligned_cols=33  Identities=30%  Similarity=0.327  Sum_probs=26.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|.|||.|..||.+|..|+. |++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            479999999999999999986 999999999875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.05  E-value=0.13  Score=46.86  Aligned_cols=54  Identities=9%  Similarity=-0.070  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhCC-cEEEeCceEeecccCCCc-eeE---EcCCCc--EEeccEEEEccCCC
Q 022896          181 AGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTY---LTSTGD--TINADCHFLCTGKP  234 (290)
Q Consensus       181 ~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~-~~v---~~~~g~--~~~~d~vv~a~G~~  234 (290)
                      +...+.+.+++.+ ++++.++.++++..+++. ..+   ...+|+  .+.++.||+|+|-.
T Consensus       134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  194 (608)
T PRK06854        134 YKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGA  194 (608)
T ss_pred             HHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence            3444555666665 999999999888655543 222   234554  68899999999953

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.96  E-value=0.0084  Score=48.91  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|.-|...|..|.. |++|+++|+++.
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            3589999999999999999875 999999999874

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.94  E-value=0.11  Score=47.56  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=37.5

Q ss_pred             HHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEc---CCCc--EEeccEEEEccCCC
Q 022896          183 DKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKP  234 (290)
Q Consensus       183 ~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~  234 (290)
                      +.+.+.+++.||+++.++.++++..+++. ..+..   .+|+  .+.++.||+|||--
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~  231 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGY  231 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence            44555677889999999999988765544 33332   2454  58899999999863

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.90  E-value=0.0093  Score=43.57  Aligned_cols=30  Identities=40%  Similarity=0.625  Sum_probs=27.8

Q ss_pred             EEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        16 vvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      |+|+|+|..|...|++|++ |++|+++.+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999976 99999999965

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.89  E-value=0.027  Score=47.10  Aligned_cols=99  Identities=18%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE-
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL-  215 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~-  215 (290)
                      ++|+|+|+|+.|+++|..+.. ....++.++.|..        .=++.+.+.+.+.+-.+.....-.....-.+++.+. 
T Consensus         2 ~~VLI~GtGPvAiQLAv~lk~-~~~~~vGi~~R~S--------~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~   72 (429)
T PF10100_consen    2 GNVLIVGTGPVAIQLAVILKK-HGNCRVGIVGRES--------VRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDH   72 (429)
T ss_pred             CceEEEcCCHHHHHHHHHHHh-ccCceeeeecCcc--------hhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhH
Confidence            589999999999999999987 3567899888844        445667777777655555444333333334444332 


Q ss_pred             -cCCCcE--EeccEEEEccCCCCCchhhcccc
Q 022896          216 -TSTGDT--INADCHFLCTGKPVGSDWLKDTI  244 (290)
Q Consensus       216 -~~~g~~--~~~d~vv~a~G~~~~~~~l~~~~  244 (290)
                       ..+=+.  =+.|.+|+|+......+.|++..
T Consensus        73 ~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~  104 (429)
T PF10100_consen   73 VFQDYEEIEGEWDTLILAVTADAYLDVLQQLP  104 (429)
T ss_pred             hhcCHHHhcccccEEEEEechHHHHHHHHhcC
Confidence             111122  24789999998877666666543

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.82  E-value=0.15  Score=46.01  Aligned_cols=54  Identities=11%  Similarity=-0.139  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEc---CCCc--EEeccEEEEccCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGK  233 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~  233 (290)
                      .+...+.+.+++.||+++.++.++++..+++. ..+..   .+|+  .+.++.||+|||-
T Consensus       137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            35556667777789999999999888776554 33322   2443  5789999999984

>PRK04148 hypothetical protein; Provisional

Probab=95.80  E-value=0.0079  Score=42.52  Aligned_cols=33  Identities=42%  Similarity=0.416  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..++++||.| .|.+.|..|++ |++|+.+|-++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999 89999999976 999999999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.79  E-value=0.011  Score=44.06  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=28.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...+++|+|+|.+|..||..|.. |++++++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            35899999999999999999986 99999999854

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.77  E-value=0.009  Score=48.49  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..-|-|||||.||-.|||++++ |.+|.++|-++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            4678999999999999999975 999999998764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.76  E-value=0.012  Score=48.50  Aligned_cols=33  Identities=30%  Similarity=0.284  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++++|||+|..|...|.+|.+ |.+|+++.|..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            3679999999999999999987 89999999964

>PTZ00367 squalene epoxidase; Provisional

Probab=95.76  E-value=0.14  Score=46.03  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=28.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ..+|+|||+|..|+-+|..|.+  .+.+|+++++.+
T Consensus        33 ~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence            3579999999999999999986  488999998764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.69  E-value=0.011  Score=48.80  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            479999999999999999975 999999999864

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=95.63  E-value=0.12  Score=43.37  Aligned_cols=62  Identities=11%  Similarity=-0.032  Sum_probs=39.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      +.++.++.|...+.|++...     -..+++....+.    -..+..+.+.+.+...-+.++....+..++
T Consensus       138 ~~~~~~lsGP~~A~Eva~~~-----pt~~~ia~~~~~----~~~~~a~~~~~lf~~~~frv~~s~Dv~GvE  199 (342)
T TIGR03376       138 GIPCGVLSGANLANEVAKEK-----FSETTVGYRDPA----DFDVDARVLKALFHRPYFRVNVVDDVAGVE  199 (342)
T ss_pred             CCCeEEeeCcchHHHHHcCC-----CceEEEEeCCCc----chHHHHHHHHHHhCCCCEEEEEcCCcccch
Confidence            45777777777666666433     234454444310    002677888888888888888887776665

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.63  E-value=0.11  Score=42.78  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEec
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD  258 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~  258 (290)
                      +....+..|...+++++.+.--   -.+++.+.+...+|+  .+.+..+++|+|-+|..|-++...+.  .+.||++.+.
T Consensus       112 LngIY~~~L~k~~V~~i~G~a~---f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~g--idSDgff~Le  186 (478)
T KOG0405|consen  112 LNGIYKRNLAKAAVKLIEGRAR---FVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELG--IDSDGFFDLE  186 (478)
T ss_pred             HHHHHHhhccccceeEEeeeEE---EcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhc--cccccccchh
Confidence            3444566667778888877532   245666778777774  47899999999999887766655553  4667776665


Q ss_pred             C
Q 022896          259 E  259 (290)
Q Consensus       259 ~  259 (290)
                      +
T Consensus       187 e  187 (478)
T KOG0405|consen  187 E  187 (478)
T ss_pred             h
Confidence            5

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.61  E-value=0.02  Score=40.94  Aligned_cols=34  Identities=41%  Similarity=0.586  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCc-EEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~-v~vie~~~   45 (290)
                      ...+++|||+|-+|-+++++|.. |.+ ++|+.|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            46899999999999999999975 876 99999864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.57  E-value=0.016  Score=49.05  Aligned_cols=33  Identities=39%  Similarity=0.503  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+++|||+|.+|+.+|..|+. |.+|+++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4779999999999999999986 99999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.56  E-value=0.064  Score=46.02  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=24.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEe
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVH  168 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~  168 (290)
                      ..-.|+|||+|..|+|.|...+.  .+.+..++.
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT   58 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAAR--LGARTLLLT   58 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHh--cCCceEEee
Confidence            34589999999999999987764  576666665

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.55  E-value=0.012  Score=51.66  Aligned_cols=35  Identities=31%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+|+|+|+|++|+.++..++. |.+|+++|.++.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999976 999999998764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.52  E-value=0.074  Score=41.06  Aligned_cols=79  Identities=11%  Similarity=0.053  Sum_probs=51.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  214 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v  214 (290)
                      .+++++|+|+|.+|..-+..|.+  .+.+|+++.+...          ..+.+..++.+++++...-      .      
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~----------~~l~~l~~~~~i~~~~~~~------~------   63 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE----------SELTLLAEQGGITWLARCF------D------   63 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC----------HHHHHHHHcCCEEEEeCCC------C------
Confidence            47899999999999999998886  5889999876432          3333434444555543221      0      


Q ss_pred             EcCCCcEEeccEEEEccCCC-CCchhh
Q 022896          215 LTSTGDTINADCHFLCTGKP-VGSDWL  240 (290)
Q Consensus       215 ~~~~g~~~~~d~vv~a~G~~-~~~~~l  240 (290)
                         .+..-.++.||.|||-. .|.++.
T Consensus        64 ---~~dl~~~~lVi~at~d~~ln~~i~   87 (205)
T TIGR01470        64 ---ADILEGAFLVIAATDDEELNRRVA   87 (205)
T ss_pred             ---HHHhCCcEEEEECCCCHHHHHHHH
Confidence               01123489999999875 444333

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.51  E-value=0.0084  Score=51.81  Aligned_cols=54  Identities=19%  Similarity=0.081  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      +...+.......|.+++.+++|++|+.+++++.+.+.+|+++.||.||+|++..
T Consensus       211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  264 (450)
T PF01593_consen  211 LSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS  264 (450)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred             hhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence            344445555556779999999999999999999999999999999999998754

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.47  E-value=0.017  Score=48.55  Aligned_cols=33  Identities=36%  Similarity=0.537  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++|.|||+|..|.+.|..|.+ |++|+++++++
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            3679999999999999999976 99999999853

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.46  E-value=0.024  Score=42.09  Aligned_cols=33  Identities=36%  Similarity=0.429  Sum_probs=28.9

Q ss_pred             CCCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCC
Q 022896           12 KNKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPK   44 (290)
Q Consensus        12 ~~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~   44 (290)
                      ..++++|||+|- +|..+|.+|.+ |.+|+++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            469999999995 79999999975 8899999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=95.44  E-value=0.21  Score=45.42  Aligned_cols=42  Identities=29%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             CCcEEEeCceEeecccCCC-c-eeEEc---CCCc--EEeccEEEEccCC
Q 022896          192 KKVDVKLGERVNLDSVSEG-S-DTYLT---STGD--TINADCHFLCTGK  233 (290)
Q Consensus       192 ~gi~~~~~~~v~~i~~~~~-~-~~v~~---~~g~--~~~~d~vv~a~G~  233 (290)
                      .||+++.++.++++..+++ . ..+..   .+|+  .+.++.||+|||-
T Consensus       146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG  194 (603)
T TIGR01811       146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG  194 (603)
T ss_pred             CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            4899999999988866443 2 33332   2453  5789999999985

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.35  E-value=0.019  Score=47.31  Aligned_cols=31  Identities=29%  Similarity=0.606  Sum_probs=28.4

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++|||+|..|...|..|.+ |++|+++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999976 89999999854

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.33  E-value=0.021  Score=46.86  Aligned_cols=34  Identities=35%  Similarity=0.364  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3679999999999999999975 999999998764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.32  E-value=0.019  Score=47.02  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            469999999999999999975 999999999864

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.31  E-value=0.023  Score=46.98  Aligned_cols=34  Identities=32%  Similarity=0.282  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|..|...|..+.. |++|+++|+.+.
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4679999999999999999875 999999999764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.31  E-value=0.02  Score=46.86  Aligned_cols=33  Identities=42%  Similarity=0.541  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+|.|||+|..|.+.|..|++ |++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            579999999999999999975 999999998763

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.26  E-value=0.018  Score=46.07  Aligned_cols=35  Identities=37%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc--------cCCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ--------FSADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~--------~g~~v~vie~~~~   46 (290)
                      +..+++|||+|..||+.|..+.        +..+|++++.+..
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~   44 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT   44 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence            3589999999999999996653        2478999987664

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.23  E-value=0.024  Score=48.42  Aligned_cols=35  Identities=31%  Similarity=0.279  Sum_probs=30.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....|+|+|+|+.|+.+|..|+. |.+|+++|.++.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            35789999999999999999975 999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.19  E-value=0.13  Score=42.29  Aligned_cols=34  Identities=32%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      .+|.|||+|.=|-+.|..|++ |++|.+.-+++..
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~   36 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEI   36 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHH
Confidence            579999999999999999986 8999999998753

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.19  E-value=0.016  Score=41.37  Aligned_cols=31  Identities=26%  Similarity=0.495  Sum_probs=26.6

Q ss_pred             EEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        16 vvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|+|+|+.+.++|..++. |++|+++|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            5899999999999999987 999999999864

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.17  E-value=0.024  Score=46.78  Aligned_cols=29  Identities=31%  Similarity=0.497  Sum_probs=27.4

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDP   43 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~   43 (290)
                      +|+|||+|..|...|..|.+ |++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            69999999999999999976 999999998

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.07  E-value=0.02  Score=46.08  Aligned_cols=33  Identities=45%  Similarity=0.585  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .-+|+|||||.+|..+|+-+.- |.+|+++|.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            5789999999999999999865 99999999984

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.06  E-value=0.064  Score=33.16  Aligned_cols=32  Identities=34%  Similarity=0.441  Sum_probs=27.7

Q ss_pred             EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 022896          141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (290)
Q Consensus       141 iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~  174 (290)
                      |||+|.+|+.+|..|.+.  +.+|+++++.+.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccC
Confidence            799999999999999974  88999999988764

...

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.01  E-value=0.11  Score=40.00  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK  169 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~  169 (290)
                      .+++++|+|+|..|...+..|.+  .+.+|+++.+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcC
Confidence            57999999999999999998887  3789999874

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.96  E-value=0.033  Score=46.17  Aligned_cols=34  Identities=32%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4679999999999999999975 999999998763

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.94  E-value=0.031  Score=46.13  Aligned_cols=33  Identities=27%  Similarity=0.551  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~   46 (290)
                      ++|.|||+|..|.++|+.|.. |  .++.++|++..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            369999999999999999964 6  58999999764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08071 L-aspartate oxidase; Provisional

Probab=94.94  E-value=0.3  Score=43.55  Aligned_cols=54  Identities=24%  Similarity=0.108  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEE--cCCCc--EEeccEEEEccCCCC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYL--TSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~--~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      +...+.+.++ .||+++.++.++++..+++. ..+.  ..+|+  .+.++.||+|+|-..
T Consensus       132 i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        132 LLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             HHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            4444555454 58999999988877655443 2232  23443  578999999998644

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=94.86  E-value=0.12  Score=43.51  Aligned_cols=63  Identities=27%  Similarity=0.431  Sum_probs=47.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-----------------------C-----------hhHH
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------------------G-----------PKAG  182 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------------------~-----------~~~~  182 (290)
                      ..|+|||+|++|+.+|..+.+  .+.+|.++++.+.+.+.+                       +           .-..
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            579999999999999999986  599999999877654311                       0           0112


Q ss_pred             HHHHHHHHhCCcEEEeCce
Q 022896          183 DKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       183 ~~~~~~~~~~gi~~~~~~~  201 (290)
                      +.+.+++++.||+++..+.
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~  100 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDL  100 (408)
T ss_pred             HHHHHHHHhcCCeeEEccC
Confidence            3467788899999886553

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.86  E-value=0.03  Score=45.93  Aligned_cols=33  Identities=36%  Similarity=0.500  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+|.|||+|..|.+.|..|++ |++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            579999999999999999975 999999999764

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.80  E-value=0.04  Score=48.16  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (290)
                      .++|+|+|.|.+|.++|..|.+|.+|++.|.+.
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~   38 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK   38 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence            368999999999999999998899999999653

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.78  E-value=0.038  Score=47.75  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=27.7

Q ss_pred             hHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh
Q 022896           23 VAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR   55 (290)
Q Consensus        23 ~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~   55 (290)
                      +|||+||++|++ |.+|+|+|+++.+|+......
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~   34 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFR   34 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEE
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEec
Confidence            589999999976 999999999999997655443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.72  E-value=0.047  Score=41.94  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ...+|+|||+|-.|..+|..|.+ |. +++++|.+.
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            46899999999999999999987 87 699999984

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.70  E-value=0.039  Score=48.80  Aligned_cols=33  Identities=33%  Similarity=0.419  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+|+|+|.|.+|++++..|+. |.+|++.|.++
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999865 99999999653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.69  E-value=0.042  Score=48.04  Aligned_cols=33  Identities=42%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.++|+|+|.+|+++|..|++ |++|++.|++.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4679999999999999999975 99999999765

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.69  E-value=0.044  Score=44.96  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=30.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...+++|||.|.+|..+|..|++ |.+|++++++.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35899999999999999999976 99999999974

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.67  E-value=0.039  Score=45.00  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+|.|||+|..|.+.|..|.+ |++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            579999999999999999975 999999998764

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.66  E-value=0.032  Score=38.61  Aligned_cols=31  Identities=39%  Similarity=0.506  Sum_probs=26.9

Q ss_pred             EEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        16 vvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|+|.|..|..+|..|.+ +.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            6899999999999999987 559999999764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.64  E-value=0.042  Score=48.20  Aligned_cols=33  Identities=42%  Similarity=0.469  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++++|+|.|.+|+++|..|++ |++|++.|+++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4689999999999999999975 99999999865

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.56  E-value=0.37  Score=32.55  Aligned_cols=34  Identities=29%  Similarity=0.518  Sum_probs=29.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~  170 (290)
                      .+++++|+|+|..|..-+..|.+  .+.+++++.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence            57999999999999999999886  58999999877

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.53  E-value=0.053  Score=45.32  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .++|.|||+|.-|.+.|..|.+ |++|+++++++.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3579999999999999999975 999999999653

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.53  E-value=0.051  Score=38.85  Aligned_cols=34  Identities=47%  Similarity=0.642  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      +.+|+|||+|-.|..+|..|.+ |. +++++|.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            4789999999999999999987 85 7999999764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.51  E-value=0.042  Score=46.88  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      +|.|||.|..|+..|..++.|++|+++|+++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQNHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCcEEEEECCHH
Confidence            68999999999999988778999999999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.49  E-value=0.053  Score=46.27  Aligned_cols=35  Identities=29%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....|+|||.|+.|..+|..|+. |.+|+++|.++.
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            36899999999999999999986 999999998663

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.46  E-value=0.05  Score=44.71  Aligned_cols=34  Identities=35%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|..|...|..|.. |++|+++|+++.
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3579999999999999999975 999999998763

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.46  E-value=0.04  Score=45.99  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++.|||+|..|.+.|..|.+ |++|+++++++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999976 89999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		5e-08
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		1e-06
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		3e-06
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		4e-06
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		1e-05
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		1e-04
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		4e-04
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		4e-04
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		4e-04
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		6e-04
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		7e-04
3oc4_A	452	Crystal Structure Of A Pyridine Nucleotide-Disulfid		8e-04

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 116/286 (40%), Gaps = 38/286 (13%)
Query: 16  VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASL-RAMVEPSFGKRSVINHT 71
           V +IG GV G   A++L+   F   ++LI  + +      SL +A+++ S  +  ++   
Sbjct: 5   VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEA 64
Query: 72  DYLVNGRI--VASP---AINITENEVLTAEGRRVVYDYLVIATGHK--------DPVPKT 118
           D+    RI  +  P   A+++    +   +G  +  D +VIATG +          +P  
Sbjct: 65  DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGV 124
Query: 119 RTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EF 176
            T R     Q       SA  +LIVGGG  G E+A           VT++  G  LL   
Sbjct: 125 VTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA--TTARKLGLSVTILEAGDELLVRV 182
Query: 177 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPV 235
           +G + G   R  L    V V+LG  V   S     +  + S G +  AD   +C G +P 
Sbjct: 183 LGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEP- 241
Query: 236 GSDWLKDTILKDSLDTHGMLMVDENLRVKG-----QKNIFAIGDIT 276
                      D L     L  D  + V        K +FA+GD+ 
Sbjct: 242 ----------ADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVA 277

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 8/205 (3%)
Query: 76  NGRIVASPAINITENEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI- 133
           N  I  S A+ + E+ + L+  G R+  + ++IATG K  V  +  +  +     N+   
Sbjct: 128 NVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAK-IVSNSAIKGSDLCLTSNEIFD 186
Query: 134 --KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 191
             K  +SI+IVGGG  GVE A          K TL+H+G  +L            D +++
Sbjct: 187 LEKLPKSIVIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVA 244
Query: 192 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 251
           K + +     V+    +E     + + G TI AD   L TG+   +  L        ++ 
Sbjct: 245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNE 304
Query: 252 HGMLMVDENLRVKGQKNIFAIGDIT 276
            G ++VDE +      +I+A+GD+T
Sbjct: 305 FGAVVVDEKMTTN-VSHIWAVGDVT 328

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 12/191 (6%)
Query: 94  TAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI---KSARSILIVGGGPTGVE 150
           +A   R+  D++++ATG    +P      +    + N+     +  R +L VGGG   VE
Sbjct: 145 SAVKERLQADHILLATGSWPQMPAI--PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVE 202
Query: 151 LAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE---RVNLDS 206
            AG   A   P  KVTL ++ + +L        ++    L +  +++   E   +V+L++
Sbjct: 203 FAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNT 262
Query: 207 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 266
             +GS      +G T++ D   +  G+   ++ L+   +   L   G + VDE  R    
Sbjct: 263 --DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-V 319
Query: 267 KNIFAIGDITD 277
            NI+AIGDITD
Sbjct: 320 PNIYAIGDITD 330

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 12/191 (6%)
Query: 94  TAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI---KSARSILIVGGGPTGVE 150
           +A   R+  D++++ATG    +P      +    + N+     +  R +L VGGG   VE
Sbjct: 148 SAVKERLQADHILLATGSWPQMPAI--PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVE 205
Query: 151 LAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE---RVNLDS 206
            AG   A   P  KVTL ++ + +L        ++    L +  +++   E   +V+L++
Sbjct: 206 FAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNT 265
Query: 207 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 266
             +GS      +G T++ D   +  G+   ++ L+   +   L   G + VDE  R    
Sbjct: 266 --DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-V 322
Query: 267 KNIFAIGDITD 277
            NI+AIGDITD
Sbjct: 323 PNIYAIGDITD 333

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 28/200 (14%)
Query: 91  EVLTAEGRRVVYDYLVIATGHK---DPVPKTRTERLNQYQAEN------QKIKSARSILI 141
           +++T E +   YD L++ TG K    P+P   + R+   +  N      ++   A++I I
Sbjct: 95  DLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITI 154
Query: 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK-----VDV 196
           +G G  G ELA   A       V L+    R+L     K  DK    +++K      V++
Sbjct: 155 IGSGYIGAELAE--AYSNQNYNVNLIDGHERVLY----KYFDKEFTDILAKDYEAHGVNL 208
Query: 197 KLGERVNLDSVSEGSDTYLTST--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 254
            LG +V   +  E  D  +T T  G  I +D   LC G    ++ LK  +   ++  +G 
Sbjct: 209 VLGSKVA--AFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKV---AMLDNGA 263
Query: 255 LMVDENLRVKGQKNIFAIGD 274
           ++ DE +     ++IFA GD
Sbjct: 264 IITDEYMH-SSNRDIFAAGD 282

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 102/261 (39%), Gaps = 33/261 (12%)
Query: 30  KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITE 89
           +SLQ +    + DP E+F I    + A+VE          HT  + N R           
Sbjct: 59  ESLQATPYNVVRDP-EFFRIN-KDVEALVETRAHAIDRAAHTVEIENLR----------- 105
Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPK---------TRTERLNQYQAENQKIKSAR--S 138
               T E R + YD LV+A G K   P          T    L++ +     I +     
Sbjct: 106 ----TGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSK 161
Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVK 197
            +IVGGG  G+E+A  +A D      T+V    +++  F         R  L    V V 
Sbjct: 162 AVIVGGGFIGLEMAVSLA-DMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVH 220
Query: 198 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV 257
            GE+V       G    + +   T++AD   L  G    +   +D  L+  LD  G ++V
Sbjct: 221 TGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLE--LDPRGAIIV 278
Query: 258 DENLRVKGQKNIFAIGDITDI 278
           D  +R     +IFA GD   I
Sbjct: 279 DTRMRTS-DPDIFAGGDCVTI 298

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           +VN R  A PA  + E         R+  +++++A+G    +P      +    + N+  
Sbjct: 134 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 182
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189
              +  R +L VGGG   VE AG      P + +VTL ++G  +L        ++    L
Sbjct: 183 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQL 242
Query: 190 ISKKVDVKLGE---RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK 246
            +  + +   E   +V L++  +GS +    +G  ++ D   +  G+   S   KD  L+
Sbjct: 243 TANGIQILTKENPAKVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQ 297
Query: 247 DS--LDTHGMLMVDENLRVKGQKNIFAIGDITD 277
           ++  +  +G + VDE  R     NI+AIGD+T+
Sbjct: 298 NAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 329

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           +VN R  A PA  + E         R+  +++++A+G    +P      +    + N+  
Sbjct: 133 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 181
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189
              +  R +L VGGG   VE AG      P + +VTL ++G  +L        ++    L
Sbjct: 182 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQL 241
Query: 190 ISKKVDVKLGE---RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK 246
            +  + +   E   +V L++  +GS +    +G  ++ D   +  G+   S   KD  L+
Sbjct: 242 TANGIQILTKENPAKVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQ 296
Query: 247 DS--LDTHGMLMVDENLRVKGQKNIFAIGDITD 277
           ++  +  +G + VDE  R     NI+AIGD+T+
Sbjct: 297 NAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 328

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           +VN R  A PA  + E         R+  +++++A+G    +P      +    + N+  
Sbjct: 135 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 183
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189
              +  R +L VGGG   VE AG      P + +VTL ++G  +L        ++    L
Sbjct: 184 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQL 243
Query: 190 ISKKVDVKLGE---RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK 246
            +  + +   E   +V L++  +GS +    +G  ++ D   +  G+   S   KD  L+
Sbjct: 244 TANGIQILTKENPAKVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQ 298
Query: 247 DS--LDTHGMLMVDENLRVKGQKNIFAIGDITD 277
           ++  +  +G + VDE  R     NI+AIGD+T+
Sbjct: 299 NAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 330

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV 196
           +S++++GGG  G+EL G    +F  K   L   G  L  F      +K    +I K++  
Sbjct: 171 KSLVVIGGGYIGIEL-GTAYANFGTKVTILEGAGEILSGF------EKQMAAIIKKRLK- 222
Query: 197 KLGERVNLDSVSEGSD--------TYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILK 246
           K G  V  +++++G++        TY  + G+  TI+AD   +  G+   +D L    + 
Sbjct: 223 KKGVEVVTNALAKGAEEREDGVTVTY-EANGETKTIDADYVLVTVGRRPNTDELGLEQIG 281
Query: 247 DSLDTHGMLMVDENLRVKGQKNIFAIGDI 275
             +   G++ VD+  R     NIFAIGDI
Sbjct: 282 IKMTNRGLIEVDQQCRTS-VPNIFAIGDI 309

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 137 RSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 195
           R +L VGGG   VE AG      P + +VTL ++G  +L        ++    L +  + 
Sbjct: 189 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQ 248
Query: 196 VKLGE---RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS--LD 250
           +   E   +V L++  +GS +    +G  ++ D   +  G+   S   KD  L+++  + 
Sbjct: 249 ILTKENPAKVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQNAGVMI 303
Query: 251 THGMLMVDENLRVKGQKNIFAIGDITD 277
            +G + VDE  R     NI+AIGD+T+
Sbjct: 304 KNGGVQVDEYSRTN-VSNIYAIGDVTN 329

>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 15  RVVVIGG---GVAGSLVAKSLQFSADVTLIDPKE-----------YFEITWASL---RAM 57
           ++V+IG    G++ ++ ++     A+++LID +            YF  T   L   R +
Sbjct: 4   KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYI 63
Query: 58  VEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLT----AEGRRVVYDYLVIATGHKD 113
            E    ++ +      L+N  +VA       EN+++      E +   YD L++ATG   
Sbjct: 64  TEEELRRQKI----QLLLNREVVAXD----VENQLIAWTRKEEQQWYSYDKLILATGASQ 115
Query: 114 PVPKTR---TERLNQYQ------AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKV 164
              + R   TE+L +Y+      A    +++++++ ++G GP G E     A+DF  K  
Sbjct: 116 FSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXE-----AIDFLVKXK 170
Query: 165 TLVHKGSRLLEFIGPKAGDK 184
             VH     LE + PK  DK
Sbjct: 171 KTVHVFES-LENLLPKYFDK 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	9e-31
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	5e-28
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	6e-26
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-23
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	5e-22
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-21
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	6e-21
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	8e-21
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	2e-20
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	2e-20
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	5e-20
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-19
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	2e-19
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	4e-19
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	4e-19
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	6e-19
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	8e-19
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	4e-18
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	6e-18
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	9e-18
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	4e-17
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	3e-16
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	7e-14
1fec_A	490	Trypanothione reductase; redox-active center, oxid	9e-09
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	1e-08
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	1e-08
4dna_A	463	Probable glutathione reductase; structural genomic	2e-08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-08
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	3e-08
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	4e-08
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	5e-08
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	5e-08
4fk1_A	304	Putative thioredoxin reductase; structural genomic	1e-07
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-07
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	2e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	1e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	1e-06
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	3e-06
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	5e-06
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	8e-06
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	9e-06
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-05
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	1e-05
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	6e-05
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	7e-05
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	8e-05
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	2e-04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	4e-04
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	4e-04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	5e-04
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	7e-04
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	7e-04

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score =  110 bits (278), Expect = 5e-28
 Identities = 59/328 (17%), Positives = 98/328 (29%), Gaps = 62/328 (18%)

Query: 13  NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYF----EITW--ASLRAMVEPSF 62
           +  VV++G G  G   A  ++       +VTLI   +YF       W     +   + +F
Sbjct: 4   SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63

Query: 63  GKRSVINHTD-YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE 121
             R  +     + +         I+     +  A+G  V YDYL+IATG     PK   E
Sbjct: 64  PIRHYVERKGIHFIAQSAEQ---IDAEAQNITLADGNTVHYDYLMIATG-----PKLAFE 115

Query: 122 R---LNQYQAENQKIKSARSIL---------------IVGGGPTGVELAG---EIA---- 156
                + ++   Q I +                    IV G   G    G   E A    
Sbjct: 116 NVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVA 175

Query: 157 -------VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS--KKVDVKLGERVNLDSV 207
                  +       T +     +    G +    ++  L    K+  ++      +  V
Sbjct: 176 SDLKKRGMRDKIPSFTFITSEPYIGHL-GIQGVGDSKGILTKGLKEEGIEAYTNCKVTKV 234

Query: 208 SEGSDTYLTSTGDTINADCH-----FLCTGKPV-GSDWLKDTILKDSLDTHGMLMVDENL 261
            +                       F        G   +     +   +  G ++VDE+ 
Sbjct: 235 EDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGV--EGLCNPGGFVLVDEHQ 292

Query: 262 RVKGQKNIFAIGDITDIRVSASMIFPQV 289
           R K   NIFA G    I    +   P  
Sbjct: 293 RSKKYANIFAAGIAIAIPPVETTPVPTG 320

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score =  104 bits (262), Expect = 6e-26
 Identities = 49/337 (14%), Positives = 93/337 (27%), Gaps = 75/337 (22%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEIT---------WASLRAMVEP 60
            +V+V+GG       A +L+      ADV +I+   +                +  +   
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVD 61

Query: 61  SFGKRSVINHTD-YLVNGRIVASPAINITENEVLT----AEGRRVVYDYLVIATGHK--- 112
                  +         G +     I+   + V             YDY+++  G     
Sbjct: 62  ---LSEALPEKGIQFQEGTVEK---IDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLAT 115

Query: 113 ----------------DPVPKTRTERLNQYQAEN------------QKIKSARSILIVGG 144
                           +   K R E+L  +Q  N                      +   
Sbjct: 116 ELVKGWDKYGYSVCEPEFATKLR-EKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNA 174

Query: 145 GPTGVELAGEIAVDFPEK----------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 194
                    E+++                VT+   G  L +   P +            +
Sbjct: 175 DSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDL-SPNSRKAVASIYNQLGI 233

Query: 195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 254
            +       +  + E     +   G+TI AD   L      G+  LK++   D +D  G 
Sbjct: 234 KLVHN--FKIKEIRE--HEIVDEKGNTIPADITILLPPY-TGNPALKNSTP-DLVDDGGF 287

Query: 255 LMVDENLRVKGQKNIFAIGDITDIRVS--ASMIFPQV 289
           +  D N+      N++A+GD   + V     +     
Sbjct: 288 IPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTG 324

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 97.7 bits (244), Expect = 4e-23
 Identities = 69/309 (22%), Positives = 117/309 (37%), Gaps = 57/309 (18%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------E 48
              +    ++++VV+GG   G+ VA   + L    ++ +++  EY               
Sbjct: 28  DDDKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGV 87

Query: 49  IT-WASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVY 102
           IT    L         KR  +   D  V   +V    IN  E  +      T E     Y
Sbjct: 88  ITERQKLLVQTVERMSKRFNL---DIRVLSEVVK---INKEEKTITIKNVTTNETYNEAY 141

Query: 103 DYLVIATGHKDPVP--------------KTR--TERLNQYQAENQKIKSARSILIVGGGP 146
           D L+++ G K  VP              +    T+R+  Y  E +     R   ++GGG 
Sbjct: 142 DVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKK----PRHATVIGGGF 197

Query: 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 206
            GVE+  E  +     +VTLV   ++++  I  +      + + +  V++   + V  D+
Sbjct: 198 IGVEMV-E-NLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGV--DA 253

Query: 207 VSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG 265
           + E        +G  I  D   L  G +P  S   K   L   L   G + V+E  +   
Sbjct: 254 LEENGAVVRLKSGSVIQTDMLILAIGVQP-ESSLAKGAGLA--LGVRGTIKVNEKFQT-S 309

Query: 266 QKNIFAIGD 274
             +I+AIGD
Sbjct: 310 DPHIYAIGD 318

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 94.1 bits (235), Expect = 5e-22
 Identities = 57/292 (19%), Positives = 106/292 (36%), Gaps = 47/292 (16%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRA 56
            ++VV+G    G+  A   + L   +D+ + +                   +       A
Sbjct: 2   PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALA 61

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGH 111
                F  R  I          ++A   IN     V      T E     YD L+++ G 
Sbjct: 62  YTPEKFYDRKQI---TVKTYHEVIA---INDERQTVSVLNRKTNEQFEESYDKLILSPGA 115

Query: 112 KDPVPKTRTER------LNQYQAENQKIK--SARSILIVGGGPTGVELAGEIAVDFPEKK 163
                   ++       L    A +Q IK      +L+VG G   +E+  E  +      
Sbjct: 116 SANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVL-E-NLYERGLH 173

Query: 164 VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN 223
            TL+H+  ++ + +         D L  +++  +L E +  +++  G++    S G   +
Sbjct: 174 PTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI--NAI-NGNEITFKS-GKVEH 229

Query: 224 ADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 274
            D      G  P  S +++ + +K  LD  G + V++        NI+AIGD
Sbjct: 230 YDMIIEGVGTHPN-SKFIESSNIK--LDRKGFIPVNDKFET-NVPNIYAIGD 277

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 91.5 bits (228), Expect = 2e-21
 Identities = 51/300 (17%), Positives = 105/300 (35%), Gaps = 57/300 (19%)

Query: 6   QQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLI--DPK---------EYF--EITW 51
                 K+ +++++G G AG   AK+      D+T+I  +           E      + 
Sbjct: 2   HHHHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSI 61

Query: 52  ASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH 111
             +  + +  + ++   N+   + +    +   I+     V    G ++ Y+ L+IA+G 
Sbjct: 62  DDI-LIKKNDWYEK---NNIKVITSEFATS---IDPNNKLVTLKSGEKIKYEKLIIASGS 114

Query: 112 KDPVPKT---------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK 162
                K           +   +       + K+     I+GGG  G+ELA  I       
Sbjct: 115 IANKIKVPHADEIFSLYS--YDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS--GT 170

Query: 163 KVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT 221
             ++       LE  +    G   +D L    + +                      GD 
Sbjct: 171 PASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF-------------EEMGDL 217

Query: 222 INADCHFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
           I + C     G KP          +KD+ + +   ++V++++     K+I+A GD+ +  
Sbjct: 218 IRSSCVITAVGVKP------NLDFIKDTEIASKRGILVNDHMET-SIKDIYACGDVAEFY 270

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 90.7 bits (226), Expect = 6e-21
 Identities = 67/303 (22%), Positives = 113/303 (37%), Gaps = 65/303 (21%)

Query: 13  NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAM 57
           N  V++ G G AG  VA SL   ++   + LI+     P       K Y +        M
Sbjct: 1   NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLM 60

Query: 58  VEP-SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKD 113
             P  F +   I     L++ R+V+   I+    ++L A G  + Y +LV+ATG      
Sbjct: 61  FRPEKFFQDQAIE----LISDRMVS---IDREGRKLLLASGTAIEYGHLVLATGARNRML 113

Query: 114 PVPKT--------RT----ERLNQYQAENQKIKSARSILIVGGGPTGVELA------GEI 155
            VP          RT    E L       Q++   + ++++G G  G+E A      G  
Sbjct: 114 DVPNASLPDVLYLRTLDESEVL------RQRMPDKKHVVVIGAGFIGLEFAATARAKG-- 165

Query: 156 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDT 213
                  +V +V    R++   + P+      D      + +  G R   + +  +    
Sbjct: 166 ------LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTG 219

Query: 214 YLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 273
            + S G+T+  D   +  G     +          L T   ++VD+ L      +I AIG
Sbjct: 220 VVLSDGNTLPCDLVVVGVGVIPNVEIAAAA----GLPTAAGIIVDQQLLT-SDPHISAIG 274

Query: 274 DIT 276
           D  
Sbjct: 275 DCA 277

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 90.7 bits (226), Expect = 8e-21
 Identities = 60/309 (19%), Positives = 110/309 (35%), Gaps = 55/309 (17%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF------------- 47
               +    +   V+IGG  AG   A        +A+V  ++  E +             
Sbjct: 27  DDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISG 86

Query: 48  EIT-WASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVV 101
            I     L A    +F  +  I   D  V   +     ++  +  V      T +     
Sbjct: 87  AIASTEKLIARNVKTFRDKYGI---DAKVRHEVTK---VDTEKKIVYAEHTKTKDVFEFS 140

Query: 102 YDYLVIATGHKDPVP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGP 146
           YD L+IATG +  +P             KT    ER+ +   E  K++      I+GGG 
Sbjct: 141 YDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKT-LETNKVEDV---TIIGGGA 196

Query: 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 206
            G+E+A E       KKV ++ +   +         +          +++   E V    
Sbjct: 197 IGLEMA-E-TFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVK-AF 253

Query: 207 VSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG 265
                   + +   T  AD   +  G KP  +D+L+ T ++   +  G + V+  ++   
Sbjct: 254 KGNERVEAVETDKGTYKADLVLVSVGVKP-NTDFLEGTNIR--TNHKGAIEVNAYMQT-N 309

Query: 266 QKNIFAIGD 274
            ++++A GD
Sbjct: 310 VQDVYAAGD 318

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 57/321 (17%), Positives = 104/321 (32%), Gaps = 56/321 (17%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYF---- 47
           Q     +   ++IGGG A    A+S+      A V ++      P       KE +    
Sbjct: 5   QDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDD 64

Query: 48  EITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP--------------AINITENEVL 93
                +LR        +        + V+ + +                  +++ +N V 
Sbjct: 65  PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 124

Query: 94  TAEGRRVVYDYLVIATG---------------HKDPVPKTRTERLNQYQAENQKIKSARS 138
             +G ++ Y+  +IATG                K      R   +  +++  +  +  +S
Sbjct: 125 LNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRK--IGDFRSLEKISREVKS 182

Query: 139 ILIVGGGPTGVELAGEIAVDFPE--KKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVD 195
           I I+GGG  G ELA  +         +V  +      +   +     + T + +  + V 
Sbjct: 183 ITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVK 242

Query: 196 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGML 255
           V     V    VS G        G  +  D      G     +  K   L+   D  G  
Sbjct: 243 VMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 302

Query: 256 MVDENLRVKGQKNIFAIGDIT 276
            V+  L+ +   NI+  GD  
Sbjct: 303 -VNAELQAR--SNIWVAGDAA 320

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 75/306 (24%), Positives = 107/306 (34%), Gaps = 60/306 (19%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLID------------P-------KEYFEITW 51
           K VVVIG    G   A   K L   A VT+ID            P            +  
Sbjct: 4   KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQA 63

Query: 52  ASLRAMVEP-SFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYL 105
                + +P  F     +   + LV  R  A   I+   + V      T E R + YD L
Sbjct: 64  TPYNVVRDPEFFRINKDV---EALVETRAHA---IDRAAHTVEIENLRTGERRTLKYDKL 117

Query: 106 VIATGHKDPVP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPTGVE 150
           V+A G K   P                   E +    +  +        +IVGGG  G+E
Sbjct: 118 VLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGE----VSKAVIVGGGFIGLE 173

Query: 151 LAGEIAVDFPEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 209
           +A     D      T+V    +++  F         R  L    V V  GE+V       
Sbjct: 174 MA-VSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN 232

Query: 210 GSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN 268
           G    + +   T++AD   L  G  P  +   +D  L+  LD  G ++VD  +R     +
Sbjct: 233 GKVARVITDKRTLDADLVILAAGVSPN-TQLARDAGLE--LDPRGAIIVDTRMRT-SDPD 288

Query: 269 IFAIGD 274
           IFA GD
Sbjct: 289 IFAGGD 294

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 88.0 bits (219), Expect = 5e-20
 Identities = 70/299 (23%), Positives = 108/299 (36%), Gaps = 62/299 (20%)

Query: 15  RVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAMVE 59
            V +IG GV G   A++L    F   ++LI      P       K   + +      + E
Sbjct: 4   HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAE 63

Query: 60  PSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH---KDPVP 116
             +   + I   D L    + A   +++    +   +G  +  D +VIATG       +P
Sbjct: 64  ADWYGEARI---DMLTGPEVTA---LDVQTRTISLDDGTTLSADAIVIATGSRARTMALP 117

Query: 117 KT--------RT----ERLNQYQAENQKIKSARSILIVGGGPTGVELA------GEIAVD 158
            +        RT    + L           SA  +LIVGGG  G E+A      G     
Sbjct: 118 GSQLPGVVTLRTYGDVQVL------RDSWTSATRLLIVGGGLIGCEVATTARKLG----- 166

Query: 159 FPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS 217
                VT++  G  LL   +G + G   R  L    V V+LG  V   S     +  + S
Sbjct: 167 ---LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMAS 223

Query: 218 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276
            G +  AD   +C G        +       L     ++VD        K +FA+GD+ 
Sbjct: 224 DGRSFVADSALICVGAEPADQLARQA----GLACDRGVIVDHCGAT-LAKGVFAVGDVA 277

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 62/305 (20%), Positives = 111/305 (36%), Gaps = 63/305 (20%)

Query: 13  NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAM 57
           N  VV++G G+AG  VA  L    +  ++ L+      P       K Y      +    
Sbjct: 4   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 63

Query: 58  VEPS--FGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HK 112
           +     +  +++      L   ++ A   IN    +V+ ++GR + YD LV+ATG     
Sbjct: 64  LRTPDAYAAQNI----QLLGGTQVTA---INRDRQQVILSDGRALDYDRLVLATGGRPRP 116

Query: 113 DPVPKT-----------RTERLNQYQAENQKIKSARSILIVGGGPTGVELA------GEI 155
            PV              RT  L   +   +++ +   ++++GGG  G+E+A         
Sbjct: 117 LPVASGAVGKANNFRYLRT--LEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKAN-- 172

Query: 156 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 214
                   VTL+   +R+LE    P              VD++ G +V    +S      
Sbjct: 173 ------MHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKV 226

Query: 215 ---LTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFA 271
              L   G  + AD      G     +          L     ++++E+++      I A
Sbjct: 227 TAVLCEDGTRLPADLVIAGIGLIPNCELASAA----GLQVDNGIVINEHMQT-SDPLIMA 281

Query: 272 IGDIT 276
           +GD  
Sbjct: 282 VGDCA 286

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 86.4 bits (215), Expect = 2e-19
 Identities = 57/294 (19%), Positives = 114/294 (38%), Gaps = 48/294 (16%)

Query: 13  NKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLR 55
           + ++V+IG   AG   A   +     A+++LID +                 I      R
Sbjct: 2   SLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEAR 61

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL---TAEGRRVVYDYLVIATG-- 110
            + E    ++ +      L+N  +V   A+++    +      E +   YD L++ATG  
Sbjct: 62  YITEEELRRQKI----QLLLNREVV---AMDVENQLIAWTRKEEQQWYSYDKLILATGAS 114

Query: 111 -HKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKK 163
                +  ++TE+      L+   A    +++++++ ++G GP G+E   +  +   +K 
Sbjct: 115 QFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAI-D-FLVKMKKT 172

Query: 164 VTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDT 221
           V +      LL ++   +   + +  L  + V     E V    + E ++  +  T    
Sbjct: 173 VHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETV--LGIEETANGIVLETSEQE 230

Query: 222 INADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 274
           I+ D         P    +L   I     +    + VD  L+     N+FAIGD
Sbjct: 231 ISCDSGIFALNLHPQ-LAYLDKKI---QRNLDQTIAVDAYLQT-SVPNVFAIGD 279

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 60/310 (19%), Positives = 107/310 (34%), Gaps = 65/310 (20%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITW 51
            + + +   VV++G G  G+  A +L    F   V +I      P       KEY     
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREK 62

Query: 52  ASLRAMVEPS--FGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIAT 109
              R  + P+  +  ++V    +  +   +V+   ++   + V   +G  + Y  L+ AT
Sbjct: 63  TFERICIRPAQFWEDKAV----EMKLGAEVVS---LDPAAHTVKLGDGSAIEYGKLIWAT 115

Query: 110 G---HKDPVPKT--------RT----ERLNQYQAENQKIKSARSILIVGGGPTGVELA-- 152
           G    +              RT    +RL            A++ +++GGG  G+E A  
Sbjct: 116 GGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAG-----AKNAVVIGGGYIGLEAAAV 170

Query: 153 ----GEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVN-LDS 206
               G          VTL+    R+L    G    +  +    +  VD++ G  ++ ++ 
Sbjct: 171 LTKFG--------VNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG 222

Query: 207 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 266
                       G  I AD   +  G       L              + VDE  R    
Sbjct: 223 DGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA----GASGGNGVDVDEFCRT-SL 277

Query: 267 KNIFAIGDIT 276
            +++AIGD  
Sbjct: 278 TDVYAIGDCA 287

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 86.1 bits (214), Expect = 4e-19
 Identities = 58/318 (18%), Positives = 116/318 (36%), Gaps = 73/318 (22%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRA 56
           K++++IGG   G+  A   + L  +A++ + +  EY              EI   ++L  
Sbjct: 2   KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVL 61

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGH 111
               SF  R  +   +  V   +VA   I+     V           +  YD L+++ G 
Sbjct: 62  QTPESFKARFNV---EVRVKHEVVA---IDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA 115

Query: 112 KDPVP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA 156
              VP             +     +R+ Q   +   ++ A    +VGGG  G+E+  E +
Sbjct: 116 APIVPPIPGVDNPLTHSLRNIPDMDRILQT-IQMNNVEHA---TVVGGGFIGLEMM-E-S 169

Query: 157 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV-------------- 202
           +     K TL+    +++  +  +        +  + VD++LG  +              
Sbjct: 170 LHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASD 229

Query: 203 -----NLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLM 256
                      +G  +   S G+ +  D   +  G +P  +   +D  L   +   G + 
Sbjct: 230 AAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRP-ETQLARDAGLA--IGELGGIK 286

Query: 257 VDENLRVKGQKNIFAIGD 274
           V+  ++      I+A+GD
Sbjct: 287 VNAMMQT-SDPAIYAVGD 303

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 84.8 bits (210), Expect = 6e-19
 Identities = 59/302 (19%), Positives = 98/302 (32%), Gaps = 45/302 (14%)

Query: 14  KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEI----TW--ASLRAMVEPSFGK 64
           ++VVV+GGG  G+  AK ++    S +VTLI+P   +             R +     G 
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK---DPVPKTRTE 121
             +  H   +V+        I+  +  V TA G    YD  V+A G +   D +     E
Sbjct: 63  DGLRAHGIQVVHDSATG---IDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEGYSEE 119

Query: 122 ----------RLNQYQAENQKIKSARS---ILIVG------GGPTGVELAGEIAVDF--- 159
                        Q     ++++       ++I          P   E A ++A      
Sbjct: 120 AAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAH 179

Query: 160 -PEKKVTLVHKGSRLLEFIGPKAGDKT--RDWLISKKVDVKLGERVNLDSVSEGSDTYLT 216
            P  KV ++       +      G +        +  ++   G    +  V  G     T
Sbjct: 180 KPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVET 239

Query: 217 STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDI 275
           + GD   AD   L           +   L +     G   VD +       K I  IGD 
Sbjct: 240 AFGDEFKADVINLIP-PQRAGKIAQIAGLTND---AGWCPVDIKTFESSIHKGIHVIGDA 295

Query: 276 TD 277
           + 
Sbjct: 296 SI 297

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 84.5 bits (210), Expect = 8e-19
 Identities = 60/301 (19%), Positives = 99/301 (32%), Gaps = 61/301 (20%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWAS 53
            E     VVV+G G+A       L    +   +T++      P       K++       
Sbjct: 3   QEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFM------ 56

Query: 54  LRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH-- 111
                E            ++L+        + +   + V  ++GR + Y  LV+ATG   
Sbjct: 57  AHGDAEKIRLDCKRAPEVEWLLGVTAQ---SFDPQAHTVALSDGRTLPYGTLVLATGAAP 113

Query: 112 -KDPVPKT--------RTERLNQYQAENQKIKSARSILIVGGGPTGVELA------GEIA 156
              P  +         RT  L   +     ++    +LIVGGG  G+ELA      G   
Sbjct: 114 RALPTLQGATMPVHTLRT--LEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG--- 168

Query: 157 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL 215
                  V+LV    RL+         D    +  ++ VD++    V            L
Sbjct: 169 -----VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV----TGSVDGVVL 219

Query: 216 TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 275
              G  I AD   +  G        +       L     + VD   R     +++A+GD+
Sbjct: 220 LDDGTRIAADMVVVGIGVLANDALARAA----GLACDDGIFVDAYGRT-TCPDVYALGDV 274

Query: 276 T 276
           T
Sbjct: 275 T 275

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 82.9 bits (206), Expect = 4e-18
 Identities = 62/295 (21%), Positives = 111/295 (37%), Gaps = 49/295 (16%)

Query: 15  RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EITWASLRAMV 58
           +V+V+G   AG+       +    ADVT  +  +               EI     R + 
Sbjct: 2   KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLF 61

Query: 59  EPS---FGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATG 110
             S             +  +  ++     ++     +      T E +   YD L++ TG
Sbjct: 62  YSSPEELSNLGA----NVQMRHQVTN---VDPETKTIKVKDLITNEEKTEAYDKLIMTTG 114

Query: 111 ---HKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPE 161
                 P+P   + R       N  +   ++   A++I I+G G  G ELA E A     
Sbjct: 115 SKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA-E-AYSNQN 172

Query: 162 KKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD 220
             V L+    R+L ++   +  D       +  V++ LG +V      +      T  G 
Sbjct: 173 YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGK 232

Query: 221 TINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 274
            I +D   LC G +P  ++ LK  +   ++  +G ++ DE +     ++IFA GD
Sbjct: 233 EIKSDIAILCIGFRPN-TELLKGKV---AMLDNGAIITDEYMHS-SNRDIFAAGD 282

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 81.8 bits (203), Expect = 9e-18
 Identities = 61/305 (20%), Positives = 116/305 (38%), Gaps = 70/305 (22%)

Query: 15  RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRAM 57
           +V+V+G    G        +L   A++   +  ++              ++    S+R M
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 58  VEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGHK 112
                  R V    +   N  I A   I   E++V      + E R   YD L+I+ G  
Sbjct: 62  TGEKMESRGV----NVFSNTEITA---IQPKEHQVTVKDLVSGEERVENYDKLIISPGAV 114

Query: 113 DPVP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAV 157
                            + R    +L Q    + ++ +    +++G G  G+E A     
Sbjct: 115 PFELDIPGKDLDNIYLMRGRQWAIKLKQK-TVDPEVNNV---VVIGSGYIGIEAA----- 165

Query: 158 DFPE------KKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 210
              E      KKVT++    R L  ++  +  D   + + +  + +  GE V      +G
Sbjct: 166 ---EAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVE-RYEGDG 221

Query: 211 SDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNI 269
               + +  +  +AD   +  G +P  + WLK T+    L  +G++  DE +R   + ++
Sbjct: 222 RVQKVVTDKNAYDADLVVVAVGVRPN-TAWLKGTL---ELHPNGLIKTDEYMRT-SEPDV 276

Query: 270 FAIGD 274
           FA+GD
Sbjct: 277 FAVGD 281

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 79.8 bits (198), Expect = 4e-17
 Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 56/297 (18%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWAS---------------LR 55
           K+VV+IGGG AG   A   K L+   DV + +  E+  ++ A                L 
Sbjct: 4   KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW--VSHAPCGIPYVVEGLSTPDKLM 61

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-TAEGRRVVYDYLVIATGHKDP 114
                 F K+  I   D  +N  ++    ++     V      +   +DYLV A G    
Sbjct: 62  YYPPEVFIKKRGI---DLHLNAEVIE---VDTGYVRVRENGGEKSYEWDYLVFANGASPQ 115

Query: 115 VP-------------KTR--TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF 159
           VP                     + +Y  E  K+++    +I+GGG  G+E+A E A   
Sbjct: 116 VPAIEGVNLKGVFTADLPPDALAIREY-MEKYKVENV---VIIGGGYIGIEMA-E-AFAA 169

Query: 160 PEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST 218
             K VT++ +G R+L      +  D   + L  K V+++L E        E     + + 
Sbjct: 170 QGKNVTMIVRGERVLRRSFDKEVTDILEEKL-KKHVNLRLQEITM-KIEGEERVEKVVTD 227

Query: 219 GDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 274
                A+   L TG KP   +  K   ++  +   G +  +E ++    +N++A GD
Sbjct: 228 AGEYKAELVILATGIKP-NIELAKQLGVR--IGETGAIWTNEKMQT-SVENVYAAGD 280

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 76.8 bits (190), Expect = 3e-16
 Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 59/295 (20%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE------------YF--EITWASLRAMVE 59
            +VV++G G  G  +AK L  + +VT+ID KE            Y    I    L     
Sbjct: 9   SKVVIVGNGPGGFELAKQLSQTYEVTVID-KEPVPYYSKPMLSHYIAGFIPRNRL-FPYS 66

Query: 60  PSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT- 118
             + ++      +  +         I+     V+T +G  V YD LV+ATG +   P+  
Sbjct: 67  LDWYRK---RGIEIRLAEEAKL---IDRGRKVVITEKGE-VPYDTLVLATGARAREPQIK 119

Query: 119 --------RT----ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTL 166
                   RT    +R+ +       I+++   +I+GGG  G+ELAG +A       V L
Sbjct: 120 GKEYLLTLRTIFDADRIKES------IENSGEAIIIGGGFIGLELAGNLAEA--GYHVKL 171

Query: 167 VHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC 226
           +H+G+  L     +  +  +D L    V   L        + E ++  + +    I    
Sbjct: 172 IHRGAMFLGL-DEELSNMIKDMLEETGVKFFLN-----SELLEANEEGVLTNSGFIEGKV 225

Query: 227 HFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
                G  P         + + S + T   +++D+N R    K+++AIGD  +  
Sbjct: 226 KICAIGIVP------NVDLARRSGIHTGRGILIDDNFRT-SAKDVYAIGDCAEYS 273

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 70.3 bits (173), Expect = 7e-14
 Identities = 57/298 (19%), Positives = 108/298 (36%), Gaps = 48/298 (16%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL---QFSADVTLI--DPK---------EYF--EITWASLR 55
           +   +V+IG G+AG  +A+          + +I  D             F        L 
Sbjct: 3   ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HK 112
                +  ++    +   L + R+     I+   ++ +      V Y  LV+A G    +
Sbjct: 63  MAEPGAMAEQ---LNARILTHTRVT---GID-PGHQRIWIGEEEVRYRDLVLAWGAEPIR 115

Query: 113 DPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTL 166
            PV     +       L  Y    Q     R +L++G G  G E A +++      ++ +
Sbjct: 116 VPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSG--GYQLDV 173

Query: 167 VHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY--LTSTGDTIN 223
           V    +++   + P A    +  L    V   LG    L S+ +  +      S G+ I 
Sbjct: 174 VAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLG--PVLASLKKAGEGLEAHLSDGEVIP 231

Query: 224 ADCHFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279
            D      G +P      +  +   + L  +  ++VD +LR     NI+A+GD  ++ 
Sbjct: 232 CDLVVSAVGLRP------RTELAFAAGLAVNRGIVVDRSLRT-SHANIYALGDCAEVD 282

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 137 RSILIVGGGPTGVELAGEI--AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 194
           +  L VGGG   +E AG I  A      +V L ++G  +L     +   +  + L +  +
Sbjct: 188 KRALCVGGGYISIEFAG-IFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGI 246

Query: 195 DVKLGERVN-LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDT 251
           +V+  E    +   ++G+   +  +G   + D   L  G  P      L+   ++  +  
Sbjct: 247 NVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVE--VAK 304

Query: 252 HGMLMVDENLRVKGQKNIFAIGDITD 277
           +G + VD   +     NI+AIGD+TD
Sbjct: 305 NGAIKVDAYSKT-NVDNIYAIGDVTD 329

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 7/145 (4%)

Query: 137 RSILIVGGGPTGVELAGEI--AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 194
           R +L VGGG   VE AG I  A   P  KVTL ++ + +L        ++    L +  +
Sbjct: 192 RRVLTVGGGFISVEFAG-IFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGI 250

Query: 195 DVKLGERVN-LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTH 252
           ++   E    +   ++GS      +G T++ D   +  G  P  ++ L+   +   L   
Sbjct: 251 EIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR-TNDLQLGNVGVKLTPK 309

Query: 253 GMLMVDENLRVKGQKNIFAIGDITD 277
           G + VDE  R     NI+AIGDITD
Sbjct: 310 GGVQVDEFSRT-NVPNIYAIGDITD 333

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 41/219 (18%)

Query: 77  GRIVASPAINITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRTERLNQY 126
            R     ++ +  NE      R V++D  ++ATG           K+    T TE L   
Sbjct: 117 ARFKDDQSLTVRLNE---GGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALAS- 172

Query: 127 QAENQKIKSARSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPK 180
                 I     + ++G     +ELA      G         KVT++   + L     P 
Sbjct: 173 ----DTIP--ERLAVIGSSVVALELAQAFARLG--------SKVTVLA-RNTLFFREDPA 217

Query: 181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW 239
            G+       ++ ++V    +          +  LT+T   + AD   + TG  P     
Sbjct: 218 IGEAVTAAFRAEGIEVLEHTQA-SQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSL 276

Query: 240 LKDTI-LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 277
             D   +   ++  G +++D+ +R     NI+A GD TD
Sbjct: 277 ALDAAGVT--VNAQGAIVIDQGMRTS-NPNIYAAGDCTD 312

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 14/147 (9%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
            SILI GGG   VE A     + V       TL+++G  +L              +  K 
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVK-----TTLIYRGKEILSRFDQDMRRGLHAAMEEKG 225

Query: 194 VDVKLGERVN-LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLD 250
           + +   + +  + + ++G     T     I AD   L  G  P  +   L+   ++   +
Sbjct: 226 IRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVR--TN 283

Query: 251 THGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VD   R      I+A+GD+TD
Sbjct: 284 ELGAIIVDAFSRT-STPGIYALGDVTD 309

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 39/289 (13%), Positives = 85/289 (29%), Gaps = 53/289 (18%)

Query: 11  GKNKRVVVIGGGVAG---SLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV 67
             + RV+V+G G +G   +       +  DV L +     ++     +    P  G  + 
Sbjct: 389 ESDARVLVVGAGPSGLEAARALGVRGY--DVVLAEAGR--DLGGRVTQESALP--GLSAW 442

Query: 68  INHTDYLVNGRIVASPAINITENEVLTAEG-RRVVYDYLVIATG---------HKDPVPK 117
               +Y     +   P + I     +T +      +++++ ATG                
Sbjct: 443 GRVKEYREA-VLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTAL 501

Query: 118 TRTERLNQYQAE---NQKIKSARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSR 172
              E +     +     ++   + +++         L G +A    +K  +V++V  G  
Sbjct: 502 PIAEGMQVLGPDDLFAGRLPDGKKVVVYDDD--HYYLGGVVAELLAQKGYEVSIVTPG-- 557

Query: 173 LLEFIGPKAGDKTRDWLISKKV---DVKLGERVNLDSVSEGSDTYLTSTGD---TINADC 226
               +     +      I +++    V       + +V  G  T   +       +  D 
Sbjct: 558 --AQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDA 615

Query: 227 HFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 274
             + T   P          L   L                  ++  IGD
Sbjct: 616 VVMVTARLP-------REELYLDLVARR--------DAGEIASVRGIGD 649

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 15/147 (10%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
           +SI+IVGGG  GVE A     + V       TL+H+G  +L            D +++K 
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVK-----TTLLHRGDLILRNFDYDLRQLLNDAMVAKG 246

Query: 194 VDVKLGERVNLDSVSEGSDTYL--TSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLD 250
           + +     V    V    + Y    + G TI AD   L TG  P  +  L        ++
Sbjct: 247 ISIIYEATV--SQVQSTENCYNVVLTNGQTICADRVMLATGRVPN-TTGLGLERAGVKVN 303

Query: 251 THGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VDE +      +I+A+GD+T 
Sbjct: 304 EFGAVVVDEKMTT-NVSHIWAVGDVTG 329

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 14/147 (9%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
             + +VG G  GVEL G    +          L       L    P   +   + + ++ 
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAK-----THLFEMFDAPLPSFDPMISETLVEVMNAEG 222

Query: 194 VDVKLGERVN-LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLD 250
             +        +   ++GS T     G +   DC     G +P   +  L+   +K   +
Sbjct: 223 PQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVK--TN 280

Query: 251 THGMLMVDENLRVKGQKNIFAIGDITD 277
             G ++VD+       + I+A+GD T 
Sbjct: 281 EKGYIVVDKYQNT-NIEGIYAVGDNTG 306

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 29/208 (13%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATG---HKDPVPKTRTER--LNQYQAENQKIKSARSILI 141
           I  + V  A G+      L++A G       VP    +    +    E    +   ++++
Sbjct: 161 IDNHTV-EAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVV 219

Query: 142 VGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 195
           VGG  T VE        G        ++  ++ +   L      +      D +  + ++
Sbjct: 220 VGGSKTAVEYGCFFNATG--------RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGME 271

Query: 196 VKLGERV-NLDSVSEGSDTYLTSTGD----TINADCHFLCTG-KPVGSDWLKDTILKDSL 249
           +  G  V  ++  + G    + +        I  D  FL  G +P  ++  K   L   L
Sbjct: 272 IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLD--L 329

Query: 250 DTHGMLMVDENLRVKGQKNIFAIGDITD 277
              G ++V+E L+     N++A+GD+  
Sbjct: 330 GPKGEVLVNEYLQTS-VPNVYAVGDLIG 356

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
           + + I+G G  G+ELAG       +     VT+V    RLL    P       + + ++ 
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSE-----VTVVALEDRLLFQFDPLLSATLAENMHAQG 221

Query: 194 VDVKLGERVN-LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLD 250
           ++  L   V  L+  ++G+             D      G  P   D  L+   ++  + 
Sbjct: 222 IETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIE--VQ 279

Query: 251 THGMLMVDENLRVKGQKNIFAIGDITD 277
           ++GM+  D          ++A+GDIT 
Sbjct: 280 SNGMVPTDAYQNT-NVPGVYALGDITG 305

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 40/287 (13%), Positives = 99/287 (34%), Gaps = 60/287 (20%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVIN 69
             K++ +       + V ++     + D   I P+E+ EI    +       +       
Sbjct: 28  ARKQIALFDNNTNRNRVTQNSHGFITRDG--IKPEEFKEIGLNEVMK-----YP------ 74

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD---PVPKTRTERLNQ- 125
            + +     +V     +    E++T +  + + + +++ATG ++    +P  R E   + 
Sbjct: 75  -SVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVR-EYYGKS 132

Query: 126 ---------YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF 176
                    ++ ++Q +      +I+           ++  ++    + +   G+ L   
Sbjct: 133 LFSCPYCDGWELKDQPL------IIISENEDHTLHMTKLVYNW-STDLVIATNGNEL--- 182

Query: 177 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS----TGDTINADCHFLCTG 232
                     D L +K + V       L    +G   YL      +G  I     F+   
Sbjct: 183 -----SQTIMDELSNKNIPVITESIRTL----QGEGGYLKKVEFHSGLRIERAGGFIVPT 233

Query: 233 KPVGSDWLKDTILKDSLDTHGMLMVDENLR--VKGQKNIFAIGDITD 277
               + +++    +  L ++G  ++D+  R   K    I+  G+ T 
Sbjct: 234 FFRPNQFIEQLGCE--LQSNGTFVIDDFGRTSEKN---IYLAGETTT 275

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 22/127 (17%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTL------------IDPKEYFEITWASLRAMVE 59
              RV +IGGG +G+ +   +   A+ T             +D +  FE      +A  E
Sbjct: 162 AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQE 221

Query: 60  ------PSFGKRSVINHTDYL---VNGRIVASPAI-NITENEVLTAEGRRVVYDYLVIAT 109
                 P  G   ++     L     G + A P     +   +  A+G    +D ++  T
Sbjct: 222 GREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCT 281

Query: 110 GHKDPVP 116
           G +  + 
Sbjct: 282 GFRPALS 288

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 47/333 (14%), Positives = 84/333 (25%), Gaps = 90/333 (27%)

Query: 15  RVVVIGGGVAGSLVAKSLQ-----F-----SADV-----------TLIDPKEYFEITWAS 53
            VVVIGGG +G      L+     +      A              L  P  +  I    
Sbjct: 5   DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSI---P 61

Query: 54  LRAMVE--PSFGKRSVINHTDYLVNGRIVASPAINITEN-------------EVLTAEGR 98
              M      +  R+ +    YL   +     A+ +                 V+  +GR
Sbjct: 62  GWPMPASQGPYPARAEV--LAYL--AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR 117

Query: 99  RVVYDYLVIATGH-KDP----VPKTRTERLNQYQA---ENQKIKSARSILIVGGGPTGVE 150
           + +   ++ ATG   +          +    Q  +         +   + I+GGG +G +
Sbjct: 118 QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQ 177

Query: 151 LAGEIA------------VDFPEKKV-----------------TLVHKGSRLLEFIGPKA 181
           +  E++              F    V                            F     
Sbjct: 178 ILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVM 237

Query: 182 GDKTRDWLISKKVDVKLG-ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 240
                D      +       R +   +         + G     D    CTG       L
Sbjct: 238 VPPVLDARARGVLAAVPPPARFSPTGM-------QWADGTERAFDAVIWCTGFRPALSHL 290

Query: 241 KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 273
           K   L        + +    LR     +++ +G
Sbjct: 291 KGLDLVT--PQGQVEVDGSGLRALAVPSVWLLG 321

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 55/291 (18%), Positives = 97/291 (33%), Gaps = 68/291 (23%)

Query: 12  KNKRVVVIGGGVAG---SLVAKSLQFSADVTLIDPKEY----FEITWASLRAMVEPSFGK 64
           + K + V+G G AG   ++ A +      VTL D        F I      A   P  GK
Sbjct: 372 QKKNLAVVGAGPAGLAFAINAAARGH--QVTLFDAHSEIGGQFNI------AKQIP--GK 421

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKDPVPKTRTE 121
                   Y    R++    + +  N  +TA+  +  +D  ++A+G      P+      
Sbjct: 422 EEFYETLRYYR--RMIEVTGVTLKLNHTVTADQLQ-AFDETILASGIVPRTPPIDGIDHP 478

Query: 122 RLNQY-QAENQKIKSARSILIVGGGPTGVELA------------------GEIAVDF--- 159
           ++  Y      K      + I+G G  G + A                   E  +D    
Sbjct: 479 KVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQ 538

Query: 160 ---------------PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 204
                          P + V L  K S+  + +G   G   R  L+S+ V +  G  V+ 
Sbjct: 539 QAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPG--VSY 596

Query: 205 DSVSEGSDTYLTSTGD--TINADCHFLCTG-KPVGSDWLKDTILKDSLDTH 252
             + +    ++   G+   +  D   +C G +P     L   ++      H
Sbjct: 597 QKIDDDG-LHVVINGETQVLAVDNVVICAGQEPN--RALAQPLIDSGKTVH 644

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 52/310 (16%), Positives = 85/310 (27%), Gaps = 68/310 (21%)

Query: 11  GKNKRVVVIGGGVAG---SLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV 67
                V+++G G +G   + V     +   V L D  E  +I     +    P  G    
Sbjct: 387 KNKDSVLIVGAGPSGSEAARVLMESGY--TVHLTDTAE--KIGGHLNQVAALP--GLGEW 440

Query: 68  INHTDYLVN---GRIVASPAINI-TENEVLTAEG-RRVVYDYLVIATG-----------H 111
             H DY        +  +    +    + +TA+   +   D ++IATG            
Sbjct: 441 SYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLT 500

Query: 112 KDPVPKTRTERLNQYQAE---NQKIKSARSILIVGGGPTGVELAGEIAVDFPE--KKVTL 166
            DP+P       +Q   E   + K K  + ++I+        +A  +A        +VT+
Sbjct: 501 HDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNAD--TYFMAPSLAEKLATAGHEVTI 558

Query: 167 VHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD------ 220
           V                     L    V+           +  G        GD      
Sbjct: 559 VSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFC--SRIEPGRMEIYNIWGDGSKRTY 616

Query: 221 ---------------TINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVK 264
                           I  D   L TG          +  L + L               
Sbjct: 617 RGPGVSPRDANTSHRWIEFDSLVLVTGRHS-------ECTLWNELKARES-----EWAEN 664

Query: 265 GQKNIFAIGD 274
             K I+ IGD
Sbjct: 665 DIKGIYLIGD 674

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 41/157 (26%)

Query: 139 ILIVGGGPTGVE----LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 194
           ++ +GGG +G      ++         K VT++    +          +     +  + +
Sbjct: 158 VVTIGGGNSGAIAAISMSE-YV-----KNVTIIEYMPKY------MCENAYVQEIKKRNI 205

Query: 195 DVKLGERVNLDSVSE---GSDTYLTS-------TGD--TINADCHFLCTGKPVGSDWLKD 242
              +      ++      G    +T        TG+   I  D  F+  G    + +LKD
Sbjct: 206 PYIM------NAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKD 259

Query: 243 TILKDSLDTHGMLMVDENLR--VKGQKNIFAIGDITD 277
           + +K  LD  G ++VD   R  V G   ++A GD+T 
Sbjct: 260 SGVK--LDERGYIVVDSRQRTSVPG---VYAAGDVTS 291

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 19/150 (12%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
           + +++VG G  G+ELAG    +  +       LV +G  +L        +   D  + + 
Sbjct: 186 KKVVVVGAGYIGIELAGVFHGLGSE-----THLVIRGETVLRKFDECIQNTITDHYVKEG 240

Query: 194 VDVKLGERVNLDSVSEGSDT-----YLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKD 247
           ++V    ++    V +  +T     ++  +    + D      G K       ++  +K 
Sbjct: 241 INVHKLSKI--VKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIK- 297

Query: 248 SLDTHGMLMVDENLRVKGQKNIFAIGDITD 277
            L++H  ++ DE        NI+++GD+  
Sbjct: 298 -LNSHDQIIADEYQNT-NVPNIYSLGDVVG 325

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 50/225 (22%)

Query: 77  GRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKDPVPK-----TRTERLNQYQA 128
            +I     + +  +E    +       Y++IA+G    K  +P      T  +      +
Sbjct: 111 VKIKDPTHVIVKTDE---GKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTS 167

Query: 129 ENQKIKSARSILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEF---IGP 179
             +  +    ++I+G G  G+E+A      G         +  ++       E       
Sbjct: 168 FRKLPQD---MVIIGAGYIGLEIASIFRLMG--------VQTHII-------EMLDRALI 209

Query: 180 KAGDK--TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD-----TINADCHFLCTG 232
              D+      L   K+++K    V      +  +  +  +       +I  +   L  G
Sbjct: 210 TLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAG 269

Query: 233 -KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276
            +PV  +  ++  L   +   G ++VDE ++     N+FA GD  
Sbjct: 270 RRPVIPEGAREIGLS--ISKTG-IVVDETMKTN-IPNVFATGDAN 310

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 43/231 (18%)

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK--------TRTE 121
           +   +   +   +        E+L           ++IA G+K   P         +  E
Sbjct: 117 NRILIKGTKDNNNKDNGPLNEEILEG-------RNILIAVGNKPVFPPVKGIENTISSDE 169

Query: 122 RLNQYQAENQKIKSARSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIG 178
             N        IK ++ I IVG G   VEL      + +D       +  +G+R+L    
Sbjct: 170 FFN--------IKESKKIGIVGSGYIAVELINVIKRLGID-----SYIFARGNRILRKFD 216

Query: 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD----TINADCHFLCTG-K 233
               +   + +    +++     V    + + SD  L+          + D    C G  
Sbjct: 217 ESVINVLENDMKKNNINIVTFADV--VEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRS 274

Query: 234 PVGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283
           P   +  L+   ++   + +  ++VDEN R     NI+A+GD   ++ S  
Sbjct: 275 PDTENLKLEKLNVE--TN-NNYIVVDENQRTS-VNNIYAVGDCCMVKKSKE 321

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 22/155 (14%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
              +IVG G   VE+AG    +         +L+ +  ++L            + L +  
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSK-----TSLMIRHDKVLRSFDSMISTNCTEELENAG 242

Query: 194 VDVKLGERVN---------LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKD 242
           V+V    +V            S+       L       + DC     G  P   D  L  
Sbjct: 243 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNK 302

Query: 243 TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 277
             ++   D  G ++VDE       K I+A+GD+  
Sbjct: 303 LGIQ--TDDKGHIIVDEFQNT-NVKGIYAVGDVCG 334

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 43/218 (19%), Positives = 76/218 (34%), Gaps = 33/218 (15%)

Query: 77  GRIV-ASPAINITENEVLTAEG--RRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
           G ++ ++P +     +   A+G       D +++ATG            L   Q + ++I
Sbjct: 117 GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATG-------ASPRILPSAQPDGERI 169

Query: 134 KSAR----------SILIVGGGPTGVELA---GEIAVDFPEKKVTLVHKGSRLLEFIGPK 180
            + R           +++VG G TG E      E+ V      VT+V     +L +    
Sbjct: 170 LTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGV-----PVTVVASQDHVLPYEDAD 224

Query: 181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW 239
           A     +    + V +    R    + +        + G T+      +  G  P  S  
Sbjct: 225 AALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGL 284

Query: 240 -LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276
            L+   ++  L     L VD   R      I+A GD T
Sbjct: 285 GLERVGIQ--LGRGNYLTVDRVSRTL-ATGIYAAGDCT 319

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 40/203 (19%)

Query: 91  EVLTAEGRRVVYDYLVIATGHKD---PVPKTRTERLNQ----------YQAENQKIKSAR 137
            V    GRR     L++A G  D    +   R ER             Y+ +  K     
Sbjct: 90  IVEIDGGRRETAGRLILAMGVTDELPEIAGLR-ERWGSAVFHCPYCHGYELDQGK----- 143

Query: 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 197
            I ++   P  +  A  +  D+  +     +                    L ++ V V 
Sbjct: 144 -IGVIAASPMAIHHALMLP-DWG-ETTFFTNGIVEP--------DADQHALLAARGVRV- 191

Query: 198 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG-MLM 256
             E   +  +  G    + + G +I     F      +  DW++           G  ++
Sbjct: 192 --ETTRIREI-AGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIV 248

Query: 257 VDENLR--VKGQKNIFAIGDITD 277
            D   +   +G   IFA GD+  
Sbjct: 249 TDPMKQTTARG---IFACGDVAR 268

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Length = 274

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 12  KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINH 70
           K+KR+++IGGG V  + + K +     +TL+ P  +  I     + +             
Sbjct: 12  KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAK 71

Query: 71  TDYLVNGRIVASPAINIT----ENEVLTAEGRRVVYDYLVIATGHKD 113
                N     +          ++E L  E     +  ++       
Sbjct: 72  RFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHP 118

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 51/162 (31%)

Query: 139 ILIVGGGPTGVE----LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG----DKTRDWLI 190
           + ++GGG +GVE    LAG I      + VTL+     +      KA     DK R    
Sbjct: 147 VAVIGGGNSGVEAAIDLAG-IV-----EHVTLLEFAPEM------KADQVLQDKLRS--- 191

Query: 191 SKKVDVKLGERVNLDSVSE---GSDTYLTS-------TGDT--INADCHFLCTG-KPVGS 237
            K VD+ L      ++ +    G  + +         +GD   I     F+  G  P  +
Sbjct: 192 LKNVDIIL------NAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPN-T 244

Query: 238 DWLKDTILKDSLDTHGMLMVDENLR--VKGQKNIFAIGDITD 277
           +WL+  +     +  G +++D      VKG   +FA GD T 
Sbjct: 245 NWLEGAV---ERNRMGEIIIDAKCETNVKG---VFAAGDCTT 280

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 37/157 (23%)

Query: 137 RSILIVGGGPTGVE----LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS- 191
           + + ++GGG +GVE    LAG I      + VTL+     +      KA    +D + S 
Sbjct: 356 KRVAVIGGGNSGVEAAIDLAG-IV-----EHVTLLEFAPEM------KADQVLQDKVRSL 403

Query: 192 KKVDVKLGERVNLDSVSEGSDTYLTS-------TGDT--INADCHFLCTGKPVGSDWLKD 242
           K VD+ L  +     V +G  + +         +GD   +     F+  G    + WL+ 
Sbjct: 404 KNVDIILNAQT--TEV-KGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG 460

Query: 243 TILKDSLDTHGMLMVDENLR--VKGQKNIFAIGDITD 277
            +     +  G +++D      VKG   +FA GD T 
Sbjct: 461 AL---ERNRMGEIIIDAKCETSVKG---VFAAGDCTT 491

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
              L++G     +E AG    +  D     VT++ +   L  F   +  +K  D++ +  
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGD-----VTVMVRSILLRGF-DQQMAEKVGDYMENHG 340

Query: 194 VDVKLG------ERVNLDSVSEGSDTYLTSTGDTIN-------ADCHFLCTG-KPVGSDW 239
           V           +++ +          L   G   +        +      G +P  S  
Sbjct: 341 VKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKV 400

Query: 240 -LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280
             +   +K  LD +G ++  ++ +     N++AIGDI   + 
Sbjct: 401 LCETVGVK--LDKNGRVVCTDDEQT-TVSNVYAIGDINAGKP 439

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 47/326 (14%), Positives = 103/326 (31%), Gaps = 95/326 (29%)

Query: 34  FSADVTLIDPKEYFEITWASL-RAMVEPSFGKRSVINHTDYLVNGRIVASPAINITE--- 89
           F  +    D K+  ++  + L +  ++     +  ++ T  L    +++     + +   
Sbjct: 29  FVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE-EMVQKFV 83

Query: 90  NEVLTAEGRRVVYDYLV--IATGHKDP--------------------VPK---TRTERLN 124
            EVL        Y +L+  I T  + P                      K   +R +   
Sbjct: 84  EEVLRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 125 QYQAENQKIKSARSILIVGGGPTG--VELAGEIAVDFPEKK--------VTLVHKGS--- 171
           + +    +++ A+++LI G   +G    +A ++ + +  +         + L +  S   
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 172 ------RLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS-------- 217
                 +LL  I P           + + D     ++ + S+       L S        
Sbjct: 198 VLEMLQKLLYQIDPN---------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 218 ------TGDTINA---DCHFLCTGKPVG-SDWLKDTILKD-SLDTHGMLMVDENLRVKGQ 266
                      NA    C  L T +    +D+L        SLD H M +  + +     
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----- 303

Query: 267 KNIFA--IG-DITDIRVSASMIFPQV 289
           K++    +     D+        P+ 
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRR 329

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 3  SRRQQQSEGKNKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEI 49
            R     GK  +++++GGG AG + A    K+LQ +AD+TL+   +   +
Sbjct: 15 VPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL 65

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 40/209 (19%), Positives = 77/209 (36%), Gaps = 39/209 (18%)

Query: 91  EVLTAEGRRVVYDYLVIATGHKDPVPKT----RTERLN----QYQAENQKIKSARSILIV 142
           +V T++G       ++IA G     P+                Y  +++     + +LIV
Sbjct: 99  KVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLIV 158

Query: 143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG-DKTRDWLISKKVDVKLG-- 199
           GGG + V+ A  +  D   +++TL+H   R  +F   +A   +        +++V     
Sbjct: 159 GGGDSAVDWALNLL-DTA-RRITLIH---RRPQFRAHEASVKELMKAHEEGRLEVLTPYE 213

Query: 200 -ERVNLDSVSEGSDTYLTSTGDT--INADCHFLCTG-----KPVGSDWLKDTILKDSLDT 251
             RV  D     +  +   T +   +  D   +  G      P+ ++W         L  
Sbjct: 214 LRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPL-ANW--------GLAL 264

Query: 252 H-GMLMVDENLR--VKGQKNIFAIGDITD 277
               + VD  +   + G   ++A GDI  
Sbjct: 265 EKNKIKVDTTMATSIPG---VYACGDIVT 290

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 44/219 (20%)

Query: 77  GRIVASPAINIT-ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKS 135
            R ++   + +    E L A        Y++IATG   P+           Q + +++ +
Sbjct: 111 ARFLSERKVLVEETGEELEA-------RYILIATGSA-PLI------PPWAQVDYERVVT 156

Query: 136 AR----------SILIVGGGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGP 179
           +            +++VGGG  G+EL       G         +V ++    R+L  +  
Sbjct: 157 STEALSFPEVPKRLIVVGGGVIGLELGVVWHRLG--------AEVIVLEYMDRILPTMDL 208

Query: 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSD 238
           +           + + ++ G RV                G+ + AD   +  G +P    
Sbjct: 209 EVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEG 268

Query: 239 W-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276
             L++  L    D  G + VDE+LR +   +I+AIGD+ 
Sbjct: 269 LSLENAGLS--TDERGRIPVDEHLRTR-VPHIYAIGDVV 304

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV 67
           ++ + K VV+IG G+ G               ++D +         L   VE   G    
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG-LDKLPEAVERHTGS--- 56

Query: 68  INHTDYLVNG--RIVASPAINITENEVLTAEGRRV 100
               D  +     IVASP I +    +  A    +
Sbjct: 57  --LNDEWLMAADLIVASPGIALAHPSLSAAADAGI 89

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 23/157 (14%)

Query: 137 RSILIVGGGPTGVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
              L+VG     +E AG    I +D      T++ +   L  F   +      + + S  
Sbjct: 186 GKTLVVGASYVALECAGFLTGIGLD-----TTVMMRSIPLRGF-DQQMSSLVTEHMESHG 239

Query: 194 VDVKLGERVNLDSVSEGSDTYLTST--------GDTINADCHFLCTG-KPVGSDWLK-DT 243
                G       + +     L  T         DT   D      G  P  +  L  + 
Sbjct: 240 TQFLKGCVP--SHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE-TRTLNLEK 296

Query: 244 ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280
               +   +  ++VD         +I+AIGD+ + R 
Sbjct: 297 AGISTNPKNQKIIVDAQEATS-VPHIYAIGDVAEGRP 332

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 46/211 (21%)

Query: 91  EVLTAEGRRVVYDYLVIATGH------KDPVPKTRTERLNQ---YQAENQKIKSARSILI 141
           E  T  G       ++IA G       K P              Y  ++ +    + ++I
Sbjct: 109 ETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVI 168

Query: 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG-DKTRDWLISKKVDVKLGE 200
           VGGG + ++    +  +     VTLVH   R  EF G      +      +  +DV L  
Sbjct: 169 VGGGDSALDWTVGLIKN--AASVTLVH---RGHEFQGHGKTAHEVERARANGTIDVYLET 223

Query: 201 RVNLDSVSEGSDTYLTS------TGDT--INADCHFLCTG-----KPVGSDWLKDTILKD 247
            V   S+ E S+  LT        G    + AD   +  G      P+ + W        
Sbjct: 224 EVA--SI-EESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPL-ARW-------- 271

Query: 248 SLDTH-GMLMVDENLR--VKGQKNIFAIGDI 275
            L+ +   L+VD +++  V G   ++A GDI
Sbjct: 272 DLELYENALVVDSHMKTSVDG---LYAAGDI 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.98
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.97
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.97
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.97
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.96
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.96
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.96
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.96
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.96
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.96
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.95
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.95
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.95
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.94
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.94
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.93
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.91
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.89
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.88
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.82
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.57
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.55
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.49
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.48
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.47
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.39
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.37
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.37
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.36
3dme_A	369	Conserved exported protein; structural genomics, P	99.36
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.36
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.34
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.31
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.29
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.28
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.28
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.28
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.26
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.25
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.24
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.22
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.22
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.21
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.21
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.2
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.2
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.19
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.18
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.17
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.15
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.13
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.13
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.12
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.12
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.12
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.12
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.11
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.11
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.1
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.08
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.08
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.07
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.07
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.05
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.05
3atr_A	453	Conserved archaeal protein; saturating double bond	99.05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.05
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.02
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.02
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.01
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.98
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.97
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.96
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.95
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.94
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.94
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.93
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.87
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.87
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.87
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.86
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.85
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.83
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.82
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.82
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.82
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.8
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.8
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.8
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.8
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.78
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.75
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.75
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.74
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.73
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.72
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.72
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.71
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.7
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.69
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.67
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.67
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.67
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.66
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.64
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.61
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.6
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.6
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.6
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.59
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.58
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.58
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.58
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.57
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.57
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.56
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.56
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.55
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.54
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.54
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.54
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.54
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.53
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.51
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.5
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.5
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.49
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.49
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.48
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.48
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.47
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.46
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.46
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.46
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.45
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.45
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.45
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.44
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.44
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.44
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.44
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.43
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.43
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.43
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.42
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.41
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.41
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.41
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.41
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.39
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.39
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.37
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.37
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.36
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.36
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.36
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.35
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.34
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.34
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.3
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.3
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.29
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.28
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.25
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.23
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.22
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.22
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.19
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.19
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.19
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.17
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.17
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.17
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.16
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.15
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.15
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.14
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.14
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.13
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.13
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.13
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.12
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.11
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.11
4g65_A	461	TRK system potassium uptake protein TRKA; structur	98.11
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.1
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.1
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.09
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.09
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.08
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.08
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.07
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.06
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.05
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.04
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.03
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.02
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.02
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.01
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.01
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.01
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.01
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.0
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.98
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.98
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.96
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.95
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.94
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.93
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.92
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.92
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.91
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.9
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.88
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.87
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.85
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.84
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.83
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.82
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.82
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.79
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.78
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.78
4dna_A	463	Probable glutathione reductase; structural genomic	97.78
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.78
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.76
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.7
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.69
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.67
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.66
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.65
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.63
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.62
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.61
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.58
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.57
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.56
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.53
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.45
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.43
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.41
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.35
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.31
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.21
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.19
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.1
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.09
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.07
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.0
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.81
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.77
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.7
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.62
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.54
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.48
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.47
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	96.34
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.29
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.27
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.21
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.19
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.18
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.17
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.13
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.13
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.06
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.06
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.04
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	96.04
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.02
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.01
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.93
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.87
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.83
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.83
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.63
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.62
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	95.6
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.59
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.54
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.53
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.52
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.46
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.46
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.46
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.45
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.45
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.43
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.34
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.34
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.28
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.27
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.27
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.26
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.26
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.22
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.22
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.2
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.16
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.14
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.09
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.08
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.07
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.05
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.04
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.01
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.01
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.97
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.93
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.93
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.91
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.86
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.85
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.83
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.82
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.79
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.74
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.71
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.7
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.7
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.65
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.63
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.55
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.54
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.52
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.5
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.44
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.43
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.43
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.42
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.4
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.4
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.39
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.38
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.37
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.37
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.37
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.36
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.32
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.32
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.31
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.31
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	94.27
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.26
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.24
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.19
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.15
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.07
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.07
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.03
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.01
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.0
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.98
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.98
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.95
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.95
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.9
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	93.9
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	93.9
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.88
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.88
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.85
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.82
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.77
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.74
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	93.73
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	93.71
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.67
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.64
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.59
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.56
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	93.55
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.54
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.54
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.53
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.49
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	93.48
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.48
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.45
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.44
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	93.44
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.38
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.37
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.36
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.33
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.3
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.29
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.29
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.28
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.27
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.26
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.24
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.14
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	93.14
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	93.12
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.1
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.02
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.98
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	92.92
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	92.91
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.89
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.88
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.87
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.86
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	92.85
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	92.82
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.81
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.8
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.79
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.77
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	92.74
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	92.73
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.72
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.69
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	92.68
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	92.65
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.63
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.63
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	92.62
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.61

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=6.6e-38  Score=266.73  Aligned_cols=262  Identities=24%  Similarity=0.345  Sum_probs=202.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCc--EEEEcCCCCcccchhhhhh-hcCCccccccccccccccc--cceEEee-eee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SAD--VTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHTDYLV--NGRIVAS-PAI   85 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~--v~vie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~-~v~   85 (290)
                      ++||+|||||++|+++|.+|++ |++  |+|||+++.+++....+.. ........+......+++.  ++++..+ .+.
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence            4699999999999999999975 766  9999999987654322221 1111111111122222222  4566665 888


Q ss_pred             eeecc--eEEecCceEEeccEEEEccCCCCCCC---Cch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896           86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVP---KTR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (290)
Q Consensus        86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p---~~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~  154 (290)
                      .+++.  .+.+.++.++.||++++|||+.|..|   +..      .....+.......+..+++++|+|+|.+++|+|..
T Consensus        82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~  161 (410)
T 3ef6_A           82 ALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATT  161 (410)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHH
Confidence            88876  68888888999999999999986554   311      12344444444455678999999999999999999


Q ss_pred             HhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          155 IAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       155 l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      +..  .+.+|+++++.+.++.. +++.+.+.+.+.+++.||++++++.|++++.++....+.+.+|+++++|.||+|+|.
T Consensus       162 l~~--~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~  239 (410)
T 3ef6_A          162 ARK--LGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGA  239 (410)
T ss_dssp             HHH--TTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred             HHh--CCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence            987  58999999999887654 778899999999999999999999999988766556788889999999999999999


Q ss_pred             CCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          234 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       234 ~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +|+.++++..++..  + + .+.||+++++ +.|+|||+|||+..+..
T Consensus       240 ~p~~~l~~~~gl~~--~-~-gi~vd~~~~t-~~~~IyA~GD~a~~~~~  282 (410)
T 3ef6_A          240 EPADQLARQAGLAC--D-R-GVIVDHCGAT-LAKGVFAVGDVASWPLR  282 (410)
T ss_dssp             EECCHHHHHTTCCB--S-S-SEECCTTSBC-SSTTEEECGGGEEEEBT
T ss_pred             eecHHHHHhCCCcc--C-C-eEEEccCeeE-CCCCEEEEEcceeccCC
Confidence            99999998887743  3 4 4999999998 79999999999987764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=4.3e-37  Score=262.43  Aligned_cols=263  Identities=19%  Similarity=0.226  Sum_probs=205.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCc--EEEEcCCCCcccchhhhh-hhcCCc-cccccccccccccc--cceEEee-e
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SAD--VTLIDPKEYFEITWASLR-AMVEPS-FGKRSVINHTDYLV--NGRIVAS-P   83 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~--v~vie~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~--~~~~~~~-~   83 (290)
                      +++||+|||||++|+++|.+|++ |++  |+|||+++.+++....+. ...... ..........+++.  ++++..+ .
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   87 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE   87 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence            46899999999999999999975 766  999999998765433332 122111 11121222222222  4566655 8


Q ss_pred             eeeeecc--eEEecCceEEeccEEEEccCCCCCCCC---c------hHHHHHHHHHHHHHHhc-CCeEEEEcCchhHHHH
Q 022896           84 AINITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---T------RTERLNQYQAENQKIKS-ARSILIVGGGPTGVEL  151 (290)
Q Consensus        84 v~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~------~~~~~~~~~~~~~~~~~-~~~v~iiG~g~~~~~~  151 (290)
                      +..+++.  .+.+.++..+.||++++|||+.|..|+   .      ......++......+.. +++++|+|+|.+++|+
T Consensus        88 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~  167 (415)
T 3lxd_A           88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEA  167 (415)
T ss_dssp             EEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHH
T ss_pred             EEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHH
Confidence            8888876  688888889999999999999876543   1      11234444555555566 8999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEE
Q 022896          152 AGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFL  229 (290)
Q Consensus       152 a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~  229 (290)
                      |..+..  .+.+|+++++.+.++.. +++.+.+.+.+.+++.|++++.++.|+++..+++. ..+.+.+|+++++|.||+
T Consensus       168 A~~l~~--~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~  245 (415)
T 3lxd_A          168 AAVLTK--FGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIV  245 (415)
T ss_dssp             HHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHh--cCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEE
Confidence            999987  58999999999988764 78889999999999999999999999999876655 468888999999999999


Q ss_pred             ccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          230 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       230 a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      |+|.+|+.++++..++..  + +| +.||+++++ +.|+|||+|||+..+..
T Consensus       246 a~G~~p~~~l~~~~gl~~--~-~g-i~vd~~~~t-~~~~iyA~GD~a~~~~~  292 (415)
T 3lxd_A          246 GIGIVPCVGALISAGASG--G-NG-VDVDEFCRT-SLTDVYAIGDCAAHAND  292 (415)
T ss_dssp             CSCCEESCHHHHHTTCCC--S-SS-EECCTTCBC-SSTTEEECGGGEEEECG
T ss_pred             CCCCccChHHHHhCCCCc--C-CC-EEECCCCCc-CCCCEEEEEeeeeecCc
Confidence            999999999998877643  3 45 999999998 79999999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=6.8e-37  Score=260.22  Aligned_cols=261  Identities=20%  Similarity=0.308  Sum_probs=203.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCCCcccchhhhh-hhcCCc-ccccccccccccc--ccceEEeeeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLR-AMVEPS-FGKRSVINHTDYL--VNGRIVASPAIN   86 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~v~~   86 (290)
                      +||+|||||++|+++|.+|++ |+  +|+|||+++.+++....+. ...... ..........+++  .++++....++.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~   81 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVS   81 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEE
Confidence            689999999999999999976 77  8999999987665422222 111111 1111122222222  145566688888


Q ss_pred             eecc--eEEecCceEEeccEEEEccCCCCCCC---Cch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHH
Q 022896           87 ITEN--EVLTAEGRRVVYDYLVIATGHKDPVP---KTR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI  155 (290)
Q Consensus        87 ~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p---~~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l  155 (290)
                      +++.  .+.+.++..+.||++++|||+.|..|   +..      ....++..........+++++|+|+|.+++|+|..+
T Consensus        82 id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l  161 (404)
T 3fg2_P           82 IDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATA  161 (404)
T ss_dssp             EETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHH
T ss_pred             EECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            8876  68888888999999999999886544   321      123455555556666799999999999999999999


Q ss_pred             hhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCC
Q 022896          156 AVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       156 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      ..  .+.+|+++++.+.++.. +++.+.+.+.+.+++.|++++.++.|+++..+++. ..+.+.+|+++++|.||+|+|.
T Consensus       162 ~~--~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          162 RA--KGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             HH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             Hh--CCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence            87  48899999999887764 78889999999999999999999999998876555 4578889999999999999999


Q ss_pred             CCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          234 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       234 ~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +|+.++++..++..  + +| +.||+++++ +.|+|||+|||+..+.+
T Consensus       240 ~p~~~l~~~~gl~~--~-~G-i~vd~~~~t-~~~~iya~GD~a~~~~~  282 (404)
T 3fg2_P          240 IPNVEIAAAAGLPT--A-AG-IIVDQQLLT-SDPHISAIGDCALFESV  282 (404)
T ss_dssp             EECCHHHHHTTCCB--S-SS-EEECTTSBC-SSTTEEECGGGEEEEET
T ss_pred             ccCHHHHHhCCCCC--C-CC-EEECCCccc-CCCCEEEeecceeecCc
Confidence            99999998877743  3 45 999999998 79999999999998764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=2.4e-37  Score=264.89  Aligned_cols=259  Identities=18%  Similarity=0.290  Sum_probs=197.0

Q ss_pred             cEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhhhhhhcCCccccc---cccccccccc--cceE-Eeeeee
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFGKR---SVINHTDYLV--NGRI-VASPAI   85 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~-~~~~v~   85 (290)
                      +|+|||||++|++||.+|++ |  .+|+|||+++...+....+...........   .......++.  ++++ ....|+
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            69999999999999999975 5  689999999876654433333222211111   1111112221  3444 356788


Q ss_pred             eeecc--eEEe-----cCceEEeccEEEEccCCCCCCCCc------hHHHHHHHHHHHHH--HhcCCeEEEEcCchhHHH
Q 022896           86 NITEN--EVLT-----AEGRRVVYDYLVIATGHKDPVPKT------RTERLNQYQAENQK--IKSARSILIVGGGPTGVE  150 (290)
Q Consensus        86 ~~~~~--~v~~-----~~~~~~~~~~vi~a~G~~~~~p~~------~~~~~~~~~~~~~~--~~~~~~v~iiG~g~~~~~  150 (290)
                      .++..  .+..     .++.++.||++|+|||++|..|+.      ....+.++..+...  ...+++++|+|+|..|+|
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E  161 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLE  161 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHH
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhh
Confidence            88765  2222     234578999999999999776652      12233444443333  235789999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEc
Q 022896          151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLC  230 (290)
Q Consensus       151 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a  230 (290)
                      +|..+..  .+.+|+++++.+++++.+++++.+.+.+.++++||+++.++.|++++..    .+.+.+|+++++|.|++|
T Consensus       162 ~A~~l~~--~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~----~v~~~~g~~~~~D~vl~a  235 (437)
T 4eqs_A          162 VLENLYE--RGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN----EITFKSGKVEHYDMIIEG  235 (437)
T ss_dssp             HHHHHHH--HTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT----EEEETTSCEEECSEEEEC
T ss_pred             hHHHHHh--cCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCC----eeeecCCeEEeeeeEEEE
Confidence            9999987  4899999999999999999999999999999999999999999776532    467788999999999999


Q ss_pred             cCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          231 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       231 ~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +|..|+.++++..++  +++++|+|.||+++|| ++|||||+|||++.+...
T Consensus       236 ~G~~Pn~~~~~~~gl--~~~~~G~I~vd~~~~T-s~p~IyA~GDva~~~~~~  284 (437)
T 4eqs_A          236 VGTHPNSKFIESSNI--KLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYRH  284 (437)
T ss_dssp             CCEEESCGGGTTSSC--CCCTTSCEECCTTCBC-SSTTEEECGGGEEEEBSS
T ss_pred             eceecCcHHHHhhhh--hhccCCcEecCCCccC-CCCCEEEEEEccCccccc
Confidence            999999999988776  5688999999999998 899999999999877643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=3.6e-37  Score=267.37  Aligned_cols=272  Identities=25%  Similarity=0.312  Sum_probs=193.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccc----ccccceEEeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD----YLVNGRIVASPAI   85 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~   85 (290)
                      +.+.+|||||||++|+++|..|++ +++|+|||+++++-+.+.................+...    ...+++++.+.|+
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~v~  119 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEAT  119 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEEEE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEEEE
Confidence            346789999999999999999986 89999999999765433221111111111111222222    1235678899999


Q ss_pred             eeecc--eEEe--------------------cCceEEeccEEEEccCCCCCC---CCch-----HHHHHHHHHHHH----
Q 022896           86 NITEN--EVLT--------------------AEGRRVVYDYLVIATGHKDPV---PKTR-----TERLNQYQAENQ----  131 (290)
Q Consensus        86 ~~~~~--~v~~--------------------~~~~~~~~~~vi~a~G~~~~~---p~~~-----~~~~~~~~~~~~----  131 (290)
                      .+|++  ++.+                    .++.++.||+||+|||+.|..   |+..     ...+.+...+.+    
T Consensus       120 ~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~  199 (502)
T 4g6h_A          120 SINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAA  199 (502)
T ss_dssp             EEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHH
T ss_pred             EEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHH
Confidence            99876  3432                    346789999999999998654   4411     111111111111    


Q ss_pred             ---H----------HhcCCeEEEEcCchhHHHHHHHHhhhC------------CCCeEEEEecCccccccCChhHHHHHH
Q 022896          132 ---K----------IKSARSILIVGGGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTR  186 (290)
Q Consensus       132 ---~----------~~~~~~v~iiG~g~~~~~~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~  186 (290)
                         .          .....+++|+|+|++|+|+|..+.+..            ...+|++++..+.+++.+++.+.+.+.
T Consensus       200 ~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~  279 (502)
T 4g6h_A          200 NLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQ  279 (502)
T ss_dssp             HHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHH
T ss_pred             HHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHH
Confidence               0          112358999999999999999886521            236899999999999999999999999


Q ss_pred             HHHHhCCcEEEeCceEeecccCCCceeEEcCCCc----EEeccEEEEccCCCCCchhhccc--ccccccCCCCcEEecCC
Q 022896          187 DWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD----TINADCHFLCTGKPVGSDWLKDT--ILKDSLDTHGMLMVDEN  260 (290)
Q Consensus       187 ~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~----~~~~d~vv~a~G~~~~~~~l~~~--~~~~~~~~~g~~~v~~~  260 (290)
                      +.|++.||+++.++.|++++.+.........+|+    ++++|.+|+|+|.+|++ ++...  .++...+.+|+|.||++
T Consensus       280 ~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~-~~~~l~~~~~~~~~~~g~I~Vd~~  358 (502)
T 4g6h_A          280 SHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARP-VITDLFKKIPEQNSSKRGLAVNDF  358 (502)
T ss_dssp             HHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCH-HHHHHHHHSGGGTTCCSSEEBCTT
T ss_pred             HHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCH-HHHhHHHhccccccCCCceeECCc
Confidence            9999999999999999877644333444566663    69999999999999863 22221  23335577899999999


Q ss_pred             ccccCCCCeEEeccccCcccccc
Q 022896          261 LRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       261 ~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      +|++++|||||+|||+..+.+++
T Consensus       359 lq~~~~~~IfAiGD~a~~~~p~~  381 (502)
T 4g6h_A          359 LQVKGSNNIFAIGDNAFAGLPPT  381 (502)
T ss_dssp             SBBTTCSSEEECGGGEESSSCCC
T ss_pred             cccCCCCCEEEEEcccCCCCCCc
Confidence            99989999999999998776554

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=4.3e-38  Score=270.89  Aligned_cols=261  Identities=19%  Similarity=0.245  Sum_probs=197.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh--------------hcC---Ccccc---------c
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA--------------MVE---PSFGK---------R   65 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~--------------~~~---~~~~~---------~   65 (290)
                      ++||+|||||++|+++|++|++ |++|+|||++ .+|+.|.....              ...   ..+..         .
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   82 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE   82 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            5899999999999999999986 9999999998 45555432100              000   00000         0


Q ss_pred             ccc------------cccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCchH-HHHHHHHHHH
Q 022896           66 SVI------------NHTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-ERLNQYQAEN  130 (290)
Q Consensus        66 ~~~------------~~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~-~~~~~~~~~~  130 (290)
                      .+.            .+...+  .+++++.+.+..+++..+.+ ++..+.||++++|||++|..|+..+ ..........
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~~  161 (450)
T 1ges_A           83 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSDGFF  161 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEECCCCSTTGGGSBCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE-CCEEEEeCEEEECCCCCCCCCCCCCccceecHHHhh
Confidence            000            000111  24677888888888777777 6778999999999999876654221 1111222233


Q ss_pred             HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC
Q 022896          131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  210 (290)
Q Consensus       131 ~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~  210 (290)
                      .....+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++.+.+.+.+.+++.|++++.++.|++++.+++
T Consensus       162 ~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~  239 (450)
T 1ges_A          162 ALPALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD  239 (450)
T ss_dssp             HCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTT
T ss_pred             hhhhcCCeEEEECCCHHHHHHHHHHHh--cCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC
Confidence            333457899999999999999999987  489999999999888888999999999999999999999999999887654


Q ss_pred             c-eeEEcCCCcEEeccEEEEccCCCCCchhh--cccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          211 S-DTYLTSTGDTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       211 ~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l--~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      + ..+.+.+|+++++|.|++|+|.+|+.+++  +..++  +++++|++.||+++|+ +.|+|||+|||++.+.
T Consensus       240 ~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  309 (450)
T 1ges_A          240 GSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGV--KTNEKGYIVVDKYQNT-NIEGIYAVGDNTGAVE  309 (450)
T ss_dssp             SCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEECSGGGTSCC
T ss_pred             cEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCc--eECCCCCEeECCCCcc-CCCCEEEEeccCCCCc
Confidence            4 77888888899999999999999998743  45444  5678899999999997 7999999999997643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=2.8e-38  Score=274.75  Aligned_cols=265  Identities=23%  Similarity=0.239  Sum_probs=198.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc--CCcEEEEc--------CCCCcccchhhhhh----------------------hcCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLID--------PKEYFEITWASLRA----------------------MVEP   60 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie--------~~~~~~~~~~~~~~----------------------~~~~   60 (290)
                      ++||+|||||++|+++|++|++  |++|+|||        +...+|+.|.....                      .+..
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~   86 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF   86 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence            5899999999999999999965  99999999        34556655432100                      0000


Q ss_pred             -----ccccccccc------------ccccc--c-cceEEeeeeeeeecceEEec---C-----ceEEeccEEEEccCCC
Q 022896           61 -----SFGKRSVIN------------HTDYL--V-NGRIVASPAINITENEVLTA---E-----GRRVVYDYLVIATGHK  112 (290)
Q Consensus        61 -----~~~~~~~~~------------~~~~~--~-~~~~~~~~v~~~~~~~v~~~---~-----~~~~~~~~vi~a~G~~  112 (290)
                           ......+..            +...+  . +++++.+.+..+++..+.+.   +     +..+.||++|+|||++
T Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATGs~  166 (495)
T 2wpf_A           87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSW  166 (495)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEE
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCCCC
Confidence                 000000000            00111  1 56778888888888777765   4     6789999999999998


Q ss_pred             CCCCCchH-HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCC-CCeEEEEecCccccccCChhHHHHHHHHHH
Q 022896          113 DPVPKTRT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLI  190 (290)
Q Consensus       113 ~~~p~~~~-~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (290)
                      |..|+..+ ..+............+++++|+|+|.+++|+|..+....+ +.+|+++++.+.+++.+++++...+.+.++
T Consensus       167 p~~p~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~  246 (495)
T 2wpf_A          167 PQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLT  246 (495)
T ss_dssp             ECCCCCTTGGGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCCCccccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHH
Confidence            76654221 1111222222222357899999999999999999987432 889999999999988899999999999999


Q ss_pred             hCCcEEEeCceEeecccCCC-ceeEEcCCCcEEeccEEEEccCCCCCchhh--cccccccccCCCCcEEecCCccccCCC
Q 022896          191 SKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQK  267 (290)
Q Consensus       191 ~~gi~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l--~~~~~~~~~~~~g~~~v~~~~~~~~~~  267 (290)
                      +.||+++.++.|++++.+++ ...+.+.+|+++++|.||+|+|.+|+.+++  +..++  +++++|+|.||+++|+ +.|
T Consensus       247 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl--~~~~~G~i~Vd~~~~t-~~~  323 (495)
T 2wpf_A          247 ANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGV--KLTPKGGVQVDEFSRT-NVP  323 (495)
T ss_dssp             HTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTC--CBCTTSSBCCCTTCBC-SST
T ss_pred             hCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCc--cCCCCCCEEECCCCcc-CCC
Confidence            99999999999999887654 377888888899999999999999998754  44444  6678899999999998 799


Q ss_pred             CeEEeccccCccc
Q 022896          268 NIFAIGDITDIRV  280 (290)
Q Consensus       268 ~vfa~Gd~~~~~~  280 (290)
                      +|||+|||++.+.
T Consensus       324 ~IyA~GD~~~~~~  336 (495)
T 2wpf_A          324 NIYAIGDITDRLM  336 (495)
T ss_dssp             TEEECGGGGCSCC
T ss_pred             CEEEEeccCCCcc
Confidence            9999999998543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=4e-38  Score=273.69  Aligned_cols=267  Identities=18%  Similarity=0.182  Sum_probs=201.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh--------------hhcC--Ccc---------cc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR--------------AMVE--PSF---------GK   64 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~--------------~~~~--~~~---------~~   64 (290)
                      ..++||+|||||++|+++|.+|++ |++|+|||++. +|+.+....              ....  +.+         ..
T Consensus         6 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   84 (492)
T 3ic9_A            6 VINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG   84 (492)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence            335899999999999999999986 99999999976 554432100              0000  000         00


Q ss_pred             ccc-cccc-----------c---ccccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCch---HHHHHHH
Q 022896           65 RSV-INHT-----------D---YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---TERLNQY  126 (290)
Q Consensus        65 ~~~-~~~~-----------~---~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~---~~~~~~~  126 (290)
                      ..+ ....           .   .....+++.+.....+...+.+.++.++.||++|+|||++|..|+..   ...+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~v~t~  164 (492)
T 3ic9_A           85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTN  164 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGGEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCcEEcH
Confidence            000 0000           0   01123466777777777788888888999999999999999888622   1222223


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++. |+++.++.+++++
T Consensus       165 ~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~  241 (492)
T 3ic9_A          165 DNLFELNDLPKSVAVFGPGVIGLELGQALSR--LGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTI  241 (492)
T ss_dssp             HHHTTCSSCCSEEEEESSCHHHHHHHHHHHH--TTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEE
T ss_pred             HHHhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEE
Confidence            3333333457999999999999999999997  489999999999998889999999999999988 9999999999998


Q ss_pred             cCCCceeEEcC--CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEec-CCccccCCCCeEEeccccCcccc
Q 022896          207 VSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       207 ~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~-~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      .+++++.+.+.  +|  +++++|.|++|+|..|+.+++.....+++++++|++.|| +++|+ +.|+|||+|||++.+..
T Consensus       242 ~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t-~~~~IyA~GD~~~~~~~  320 (492)
T 3ic9_A          242 EKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQT-SVDHIFVAGDANNTLTL  320 (492)
T ss_dssp             ECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBC-SSTTEEECGGGGTSSCS
T ss_pred             EcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccC-CCCCEEEEEecCCCCcc
Confidence            87777767653  67  589999999999999999884333344577889999999 89998 79999999999987654


Q ss_pred             c
Q 022896          282 A  282 (290)
Q Consensus       282 ~  282 (290)
                      .
T Consensus       321 ~  321 (492)
T 3ic9_A          321 L  321 (492)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=3.4e-37  Score=265.68  Aligned_cols=260  Identities=19%  Similarity=0.221  Sum_probs=194.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--cccccccccccc--cceE-Eeeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYLV--NGRI-VASPAI   85 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~-~~~~v~   85 (290)
                      +||+|||||++|+++|++|++   +++|+|||+++.+++..............  ........+++.  +..+ ....|.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            699999999999999999964   89999999999877544333322222111  111111111211  3344 356777


Q ss_pred             eeecc--eEEe---cCceEEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 022896           86 NITEN--EVLT---AEGRRVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKIKSARSILIVGGGPTGVEL  151 (290)
Q Consensus        86 ~~~~~--~v~~---~~~~~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~  151 (290)
                      .++..  .+.+   .++.++.||++++|||++|..|+   ..      ...+............+++++|+|+|.+++|+
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~  162 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEA  162 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHH
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            88765  3433   35668999999999999976554   11      11122223333445578999999999999999


Q ss_pred             HHHHhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEc
Q 022896          152 AGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLC  230 (290)
Q Consensus       152 a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a  230 (290)
                      |..+..  .+.+|+++++.+.+++. +++++.+.+.+.+++.||+++.++.|++++.+++++.+.+.+| ++++|.|++|
T Consensus       163 A~~l~~--~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A  239 (452)
T 3oc4_A          163 IDFLVK--MKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFA  239 (452)
T ss_dssp             HHHHHH--TTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEEC
T ss_pred             HHHHHh--CCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEEC
Confidence            999986  58999999999988875 8899999999999999999999999999987666677777777 8999999999


Q ss_pred             cCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          231 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       231 ~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +|.+|+.++++..   +.++++|++.||+++|+ +.|+|||+|||+..+.
T Consensus       240 ~G~~p~~~~l~~~---~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  285 (452)
T 3oc4_A          240 LNLHPQLAYLDKK---IQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMN  285 (452)
T ss_dssp             SCCBCCCSSCCTT---SCBCTTSCBCCCTTCBC-SSTTEEECGGGBCEEE
T ss_pred             cCCCCChHHHHhh---hccCCCCCEEECcCccC-CCCCEEEEEeeEEecc
Confidence            9999999887653   46688999999999998 7999999999998764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.5e-38  Score=271.94  Aligned_cols=266  Identities=21%  Similarity=0.196  Sum_probs=200.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh------------------h----cC---Cccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA------------------M----VE---PSFGKR   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~------------------~----~~---~~~~~~   65 (290)
                      .++||+|||||++|+++|++|++ |++|+|||+ ..+|+.|.....                  .    +.   ..+...
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWA   82 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHH
Confidence            36899999999999999999986 999999999 455654422100                  0    00   000000


Q ss_pred             c--------cccc----cccc--ccceEEeeeeeeeecceEEe-cCceEEeccEEEEccCCCCC-CCCchHH-HHHHHHH
Q 022896           66 S--------VINH----TDYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDP-VPKTRTE-RLNQYQA  128 (290)
Q Consensus        66 ~--------~~~~----~~~~--~~~~~~~~~v~~~~~~~v~~-~~~~~~~~~~vi~a~G~~~~-~p~~~~~-~~~~~~~  128 (290)
                      .        ...+    ..++  .+++++.+.+..+++..+.+ .++..+.||++++|||+.|. .|...+. .......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~  162 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNE  162 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGGCBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccccccHHH
Confidence            0        0000    0111  14577888888888777777 57788999999999999877 6652221 1112222


Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccC
Q 022896          129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  208 (290)
Q Consensus       129 ~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~  208 (290)
                      .......+++++|+|+|.+++|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.|++++.++.|++++.+
T Consensus       163 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~  240 (463)
T 4dna_A          163 AFDLPALPESILIAGGGYIAVEFANIFHG--LGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSAD  240 (463)
T ss_dssp             HTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEC
T ss_pred             HhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEc
Confidence            22223457999999999999999999986  5889999999999888899999999999999999999999999999877


Q ss_pred             CCc-eeEE-cCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          209 EGS-DTYL-TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       209 ~~~-~~v~-~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +++ +.+. +.+|+ +++|.|++|+|.+|+..++.....+++++++|++.||+++|+ +.|+|||+|||++.+...
T Consensus       241 ~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~  314 (463)
T 4dna_A          241 ADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRT-STPGIYALGDVTDRVQLT  314 (463)
T ss_dssp             TTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSGGGSSCCCH
T ss_pred             CCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCC-CCCCEEEEEecCCCCCCh
Confidence            555 6788 88887 999999999999999887433333446788999999999997 899999999999865443

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=7.4e-38  Score=270.23  Aligned_cols=261  Identities=22%  Similarity=0.281  Sum_probs=197.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCC---cccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEP---SFGKRS   66 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~---~~~~~~   66 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||++ .+|+.|.....                      .+..   ......
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPR   82 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence            6899999999999999999976 9999999998 45555432100                      0000   000000


Q ss_pred             cc--------c----ccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCchH-HHHHHHHHHHH
Q 022896           67 VI--------N----HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-ERLNQYQAENQ  131 (290)
Q Consensus        67 ~~--------~----~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~-~~~~~~~~~~~  131 (290)
                      +.        .    +...+  .+++++.+.+..++...+.+ ++.++.||++|+|||+.|..|+..+ ....+......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~~  161 (463)
T 2r9z_A           83 LVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFFA  161 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEECCCSCTTGGGSBCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCCCCCCCCccceecHHHHhh
Confidence            00        0    00111  24677777777788777777 6778999999999999876654221 11112222223


Q ss_pred             HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc
Q 022896          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS  211 (290)
Q Consensus       132 ~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~  211 (290)
                      ....+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++.+...+.+.+++.|++++.++.|++++.++++
T Consensus       162 ~~~~~~~vvVvGgG~~g~e~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~  239 (463)
T 2r9z_A          162 LQQQPKRVAIIGAGYIGIELAGLLRS--FGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQG  239 (463)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTE
T ss_pred             hhccCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe
Confidence            23357899999999999999999987  4899999999998888889999999999999999999999999988876556


Q ss_pred             eeEEcCCCc-EEeccEEEEccCCCCCchhh--cccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          212 DTYLTSTGD-TINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       212 ~~v~~~~g~-~~~~d~vv~a~G~~~~~~~l--~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      ..+.+.+|+ ++++|.|++|+|.+|+.+++  +..++  +++++|+|.||+++|+ +.|+|||+|||++.+.
T Consensus       240 ~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~--~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~  308 (463)
T 2r9z_A          240 TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGI--EVQSNGMVPTDAYQNT-NVPGVYALGDITGRDQ  308 (463)
T ss_dssp             EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTC--CCCTTSCCCCCTTSBC-SSTTEEECGGGGTSCC
T ss_pred             EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCC--ccCCCCCEeECCCCcc-CCCCEEEEeecCCCcc
Confidence            778888998 89999999999999998754  44444  5678899999999997 7999999999987643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=2e-36  Score=261.02  Aligned_cols=260  Identities=21%  Similarity=0.333  Sum_probs=196.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCcc----ccccccccccccc--cceE-Eeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSF----GKRSVINHTDYLV--NGRI-VASP   83 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-~~~~   83 (290)
                      +||+|||||++|+++|.+|++   |++|+|||+++..++....+........    .........+++.  ++++ ....
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   80 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ   80 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence            589999999999999999964   8999999999876544332221111111    1111111122221  3455 4456


Q ss_pred             eeeeecc--eEEecC-----ceEEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHHhcCCeEEEEcCchh
Q 022896           84 AINITEN--EVLTAE-----GRRVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKIKSARSILIVGGGPT  147 (290)
Q Consensus        84 v~~~~~~--~v~~~~-----~~~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~  147 (290)
                      +..++..  .+.+.+     +..+.||++++|||++|..|+   ..      ...+.+..........+++++|+|+|.+
T Consensus        81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~  160 (452)
T 2cdu_A           81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYI  160 (452)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHH
T ss_pred             EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHH
Confidence            7777743  455533     567999999999999865543   21      1122344445555567899999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCCcEEecc
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINAD  225 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d  225 (290)
                      |+|+|..+..  .+.+|+++++.+.+++ .+++++.+.+.+.+++.||+++.++.|++++.+++.+. +.+ +|+++++|
T Consensus       161 g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D  237 (452)
T 2cdu_A          161 GAELAEAYSN--QNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSD  237 (452)
T ss_dssp             HHHHHHHHHT--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEES
T ss_pred             HHHHHHHHHh--cCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECC
Confidence            9999999986  5889999999998887 68889999999999999999999999998876445443 444 77889999


Q ss_pred             EEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          226 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       226 ~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .||+|+|.+|+.++++.. +  +++++|++.||+++|+ +.|+|||+|||+..+.
T Consensus       238 ~vv~a~G~~p~~~ll~~~-l--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~  288 (452)
T 2cdu_A          238 IAILCIGFRPNTELLKGK-V--AMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHY  288 (452)
T ss_dssp             EEEECCCEEECCGGGTTT-S--CBCTTSCBCCCTTSBC-SSTTEEECSTTBCEEE
T ss_pred             EEEECcCCCCCHHHHHHh-h--hcCCCCCEEECCCcCc-CCCCEEEcceEEEecc
Confidence            999999999999887665 4  5678899999999998 7999999999998754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=3.2e-37  Score=259.64  Aligned_cols=249  Identities=23%  Similarity=0.350  Sum_probs=195.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcc-ccccccccccccc--cceEE-eeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYLV--NGRIV-ASPAIN   86 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~-~~~v~~   86 (290)
                      ++.+|+|||||+||++||.+|.. +.+|+|||+++.+++....+...+.... ..+......+++.  ++++. ...|+.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            36899999999999999999964 8999999999987764333333322221 1222233333332  45565 457889


Q ss_pred             eecc--eEEecCceEEeccEEEEccCCCCCCCC---ch----HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhh
Q 022896           87 ITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---TR----TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAV  157 (290)
Q Consensus        87 ~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~----~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~  157 (290)
                      ++++  .+.++++.++.||+||+|||++|..|+   ..    .....+.......+..+++++|||+|.+|+|+|..+..
T Consensus        88 id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~  167 (385)
T 3klj_A           88 IDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIID  167 (385)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHH
T ss_pred             EECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHh
Confidence            8875  688889999999999999999866544   21    12344444444555568999999999999999999997


Q ss_pred             hCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          158 DFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       158 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .  +.+|+++++.+.+++. +++.+.+.+.+.+++.||+++.++.++++             |+++++|.||+|+|.+|+
T Consensus       168 ~--g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p~  232 (385)
T 3klj_A          168 S--GTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKPN  232 (385)
T ss_dssp             H--TCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEEC
T ss_pred             C--CCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCcccC
Confidence            4  8899999999988776 78899999999999999999999998655             567999999999999999


Q ss_pred             chhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          237 SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       237 ~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .++++..++..  + +| +.||+++++ +.|+|||+|||+..+.
T Consensus       233 ~~~~~~~gl~~--~-~g-i~vd~~~~t-~~~~IyA~GD~a~~~~  271 (385)
T 3klj_A          233 LDFIKDTEIAS--K-RG-ILVNDHMET-SIKDIYACGDVAEFYG  271 (385)
T ss_dssp             CGGGTTSCCCB--S-SS-EEECTTCBC-SSTTEEECGGGEEETT
T ss_pred             hhhhhhcCCCc--C-CC-EEECCCccc-CCCCEEEEEeeEecCC
Confidence            99998877643  2 44 999999998 7999999999998654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=9.4e-38  Score=273.33  Aligned_cols=265  Identities=18%  Similarity=0.237  Sum_probs=202.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-----------------------cCCccc---
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-----------------------VEPSFG---   63 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-----------------------~~~~~~---   63 (290)
                      ..++||+|||||++|+++|++|++ |++|+|||+++.+|+.|......                       ......   
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~  120 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV  120 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhh
Confidence            346999999999999999999976 99999999998667654321100                       000000   


Q ss_pred             --cccccc----cc---ccc-------ccceEE-eeeeeeeecceEEecCceEEeccEEEEccCCCCCCCC---chHHHH
Q 022896           64 --KRSVIN----HT---DYL-------VNGRIV-ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK---TRTERL  123 (290)
Q Consensus        64 --~~~~~~----~~---~~~-------~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~~~~~  123 (290)
                        ......    ..   .++       .+++++ .+.+..+++..+.+. +..+.||++|+|||+.|..|+   .....+
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~~p~i~G~~~~~v  199 (523)
T 1mo9_A          121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPGTLDVPGVNAKGV  199 (523)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECCCCCSTTTTSBTE
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCCCCCCCCcccCcE
Confidence              000000    11   222       245666 788888888777765 678999999999999877664   211111


Q ss_pred             HHHHHHH-HHHhcC-CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCce
Q 022896          124 NQYQAEN-QKIKSA-RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       124 ~~~~~~~-~~~~~~-~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      .+..... ...... ++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.
T Consensus       200 ~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~  277 (523)
T 1mo9_A          200 FDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSN  277 (523)
T ss_dssp             EEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCE
T ss_pred             eeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCE
Confidence            2222233 211234 999999999999999999986  488999999999988888999999999999999999999999


Q ss_pred             EeecccCCCc----eeEEcCCCc-EEeccEEEEccCCCCCch-hhcccccccccCCCCcEEecCCccccCCCCeEEeccc
Q 022896          202 VNLDSVSEGS----DTYLTSTGD-TINADCHFLCTGKPVGSD-WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  275 (290)
Q Consensus       202 v~~i~~~~~~----~~v~~~~g~-~~~~d~vv~a~G~~~~~~-~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~  275 (290)
                      |++++.++++    +.+.+.+|+ ++++|.||+|+|.+|+.+ +++..++  +++++|+|.||+++|+ +.|+|||+|||
T Consensus       278 V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~  354 (523)
T 1mo9_A          278 VTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGL--DLGPKGEVLVNEYLQT-SVPNVYAVGDL  354 (523)
T ss_dssp             EEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEECGGG
T ss_pred             EEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCC--ccCCCCCEEECCCCcc-CCCCEEEEeec
Confidence            9999875555    667788887 899999999999999988 7887666  5578899999999998 79999999999


Q ss_pred             cCcccc
Q 022896          276 TDIRVS  281 (290)
Q Consensus       276 ~~~~~~  281 (290)
                      ++.+..
T Consensus       355 ~~~~~~  360 (523)
T 1mo9_A          355 IGGPME  360 (523)
T ss_dssp             GCSSCS
T ss_pred             CCCccc
Confidence            987543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.1e-38  Score=274.87  Aligned_cols=268  Identities=21%  Similarity=0.272  Sum_probs=197.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc-----------------CCccc---------c
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV-----------------EPSFG---------K   64 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~-----------------~~~~~---------~   64 (290)
                      +++||+|||||++|+++|++|++ |++|+|||+++.+|+.|.......                 -..+.         .
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  103 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL  103 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence            46999999999999999999986 999999999888887654221100                 00000         0


Q ss_pred             ccccc------------ccccc--ccceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCC-CCCch----HH
Q 022896           65 RSVIN------------HTDYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDP-VPKTR----TE  121 (290)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~-~p~~~----~~  121 (290)
                      .....            ...++  .+++++.+.+..+++..  +...++  .++.||++|+|||+.|. +|+..    ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~~~~~  183 (491)
T 3urh_A          104 QKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK  183 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCcccccCCe
Confidence            00000            00011  14567777777777764  444455  57999999999999853 44421    12


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCce
Q 022896          122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      .+.+..........+++++|||+|.+|+|+|..+...  +.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.
T Consensus       184 ~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~  261 (491)
T 3urh_A          184 TIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARL--GAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAK  261 (491)
T ss_dssp             SEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             eEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHc--CCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCe
Confidence            2223333333334679999999999999999999874  88999999999999889999999999999999999999999


Q ss_pred             EeecccCCCceeEEcCC---C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896          202 VNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  276 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~  276 (290)
                      +++++.+++...+.+.+   |  +++++|.|++|+|..|+.+++.....+++++++|++.||+++|+ +.|+|||+|||+
T Consensus       262 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  340 (491)
T 3urh_A          262 VTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIGDVV  340 (491)
T ss_dssp             EEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGS
T ss_pred             EEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCC-CCCCEEEEEecC
Confidence            99998777666565432   4  57999999999999999887433333446788999999999998 799999999999


Q ss_pred             Cccccc
Q 022896          277 DIRVSA  282 (290)
Q Consensus       277 ~~~~~~  282 (290)
                      +.+...
T Consensus       341 ~~~~~~  346 (491)
T 3urh_A          341 RGPMLA  346 (491)
T ss_dssp             SSCCCH
T ss_pred             CCccch
Confidence            776443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=2.8e-36  Score=256.46  Aligned_cols=256  Identities=23%  Similarity=0.305  Sum_probs=194.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCCCcccchhhhh-hhcCCccccccccccccccc--cceEEee-ee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLR-AMVEPSFGKRSVINHTDYLV--NGRIVAS-PA   84 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~v   84 (290)
                      +++||+|||||++|+++|.+|++ |.  +|+|||+++.+++....+. ..............   ++.  +++++.+ .|
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~v   82 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD---CKRAPEVEWLLGVTA   82 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCC---CTTSCSCEEEETCCE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHH---HHHHCCCEEEcCCEE
Confidence            46899999999999999999976 76  5999999987554321111 11111111111111   221  4566655 48


Q ss_pred             eeeecc--eEEecCceEEeccEEEEccCCCCCCCCc-hH--------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 022896           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKT-RT--------ERLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (290)
Q Consensus        85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~~-~~--------~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~  153 (290)
                      +.+++.  .+.+.++..+.||++|+|||++|..|+. .+        ....+...+...+..+++++|+|+|.+|+|+|.
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~  162 (408)
T 2gqw_A           83 QSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAA  162 (408)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHH
T ss_pred             EEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence            888864  6777788899999999999998765432 11        122333333333345899999999999999999


Q ss_pred             HHhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccC
Q 022896          154 EIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG  232 (290)
Q Consensus       154 ~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G  232 (290)
                      .+..  .+.+|+++++.+.+++. +++++...+.+.+++.||+++.++.|++++ + +  .+.+.+|+++++|.||+|+|
T Consensus       163 ~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G  236 (408)
T 2gqw_A          163 TART--AGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIG  236 (408)
T ss_dssp             HHHH--TTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSC
T ss_pred             HHHh--CCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcC
Confidence            9987  48899999999988774 788999999999999999999999998887 3 3  67778888999999999999


Q ss_pred             CCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          233 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       233 ~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      .+|+.++++..++..  + +| +.||+++|+ +.|+|||+|||+..+.+
T Consensus       237 ~~p~~~l~~~~gl~~--~-~g-i~Vd~~~~t-~~~~IyA~GD~~~~~~~  280 (408)
T 2gqw_A          237 VLANDALARAAGLAC--D-DG-IFVDAYGRT-TCPDVYALGDVTRQRNP  280 (408)
T ss_dssp             EEECCHHHHHHTCCB--S-SS-EECCTTCBC-SSTTEEECGGGEEEEET
T ss_pred             CCccHHHHHhCCCCC--C-CC-EEECCCCcc-CCCCEEEEEEEEEecCc
Confidence            999999988877643  3 45 999999998 79999999999998753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-37  Score=266.45  Aligned_cols=262  Identities=18%  Similarity=0.203  Sum_probs=195.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh--------------hhcC--Ccc---------c---
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR--------------AMVE--PSF---------G---   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~--------------~~~~--~~~---------~---   63 (290)
                      ++||+|||||++|+++|++|++ |++|+|||++. +|+.|....              ....  ..+         .   
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   89 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHL   89 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGC
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccC
Confidence            5899999999999999999976 99999999984 555543210              0000  000         0   


Q ss_pred             ---cccccc------------ccccc--ccceEEeeeeeeeecce--EEecCce--EEeccEEEEccCCCCCCC-CchH-
Q 022896           64 ---KRSVIN------------HTDYL--VNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVP-KTRT-  120 (290)
Q Consensus        64 ---~~~~~~------------~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~~--~~~~~~vi~a~G~~~~~p-~~~~-  120 (290)
                         ...+..            +...+  .+++++.+.+..+++..  +.+.++.  ++.||++|+|||++|..| +..+ 
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g~  169 (479)
T 2hqm_A           90 TFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGF  169 (479)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTTG
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCCc
Confidence               000000            00111  24577777777777664  4445665  799999999999987666 3211 


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCc
Q 022896          121 ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      ...............+++++|||+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++
T Consensus       170 ~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~  247 (479)
T 2hqm_A          170 ELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHG--LGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLS  247 (479)
T ss_dssp             GGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred             ccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCC
Confidence            1111122222333467999999999999999999987  48999999999998888999999999999999999999999


Q ss_pred             eEeecccCCCc--eeEEcCCC-cEEeccEEEEccCCCCCchh-hcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896          201 RVNLDSVSEGS--DTYLTSTG-DTINADCHFLCTGKPVGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  276 (290)
Q Consensus       201 ~v~~i~~~~~~--~~v~~~~g-~~~~~d~vv~a~G~~~~~~~-l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~  276 (290)
                      .|++++.++++  ..+.+.+| +++++|.|++|+|.+|+..+ ++..++  +++++|++.||+++++ +.|+|||+|||+
T Consensus       248 ~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  324 (479)
T 2hqm_A          248 KIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGI--KLNSHDQIIADEYQNT-NVPNIYSLGDVV  324 (479)
T ss_dssp             CEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTC--CBCTTSCBCCCTTCBC-SSTTEEECGGGT
T ss_pred             EEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCc--eECCCCCEeECCCCcc-CCCCEEEEEecC
Confidence            99999875544  67788888 78999999999999998865 566555  5678899999999997 799999999998


Q ss_pred             Cccc
Q 022896          277 DIRV  280 (290)
Q Consensus       277 ~~~~  280 (290)
                      +.+.
T Consensus       325 ~~~~  328 (479)
T 2hqm_A          325 GKVE  328 (479)
T ss_dssp             TSSC
T ss_pred             CCcc
Confidence            7643

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=1.7e-37  Score=269.62  Aligned_cols=264  Identities=19%  Similarity=0.203  Sum_probs=197.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc--CCcEEEEc--------CCCCcccchhhhhh----------------------hcCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLID--------PKEYFEITWASLRA----------------------MVEP   60 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie--------~~~~~~~~~~~~~~----------------------~~~~   60 (290)
                      ++||+|||||++|+++|++|++  |++|+|||        +...+|+.|.....                      .+..
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            5899999999999999999965  99999999        24556655432100                      0000


Q ss_pred             -----cccccccc------------cccccc--c-cceEEeeeeeeeecceEEec-----Cc---eEEeccEEEEccCCC
Q 022896           61 -----SFGKRSVI------------NHTDYL--V-NGRIVASPAINITENEVLTA-----EG---RRVVYDYLVIATGHK  112 (290)
Q Consensus        61 -----~~~~~~~~------------~~~~~~--~-~~~~~~~~v~~~~~~~v~~~-----~~---~~~~~~~vi~a~G~~  112 (290)
                           .+....+.            .+...+  . +++++.+.+..++++.+...     ++   ..+.||++|+|||++
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~  162 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSW  162 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEE
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCCC
Confidence                 00000000            001111  2 56788888888888776663     56   689999999999999


Q ss_pred             CCCCCchH-HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCC-CCeEEEEecCccccccCChhHHHHHHHHHH
Q 022896          113 DPVPKTRT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLI  190 (290)
Q Consensus       113 ~~~p~~~~-~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (290)
                      |..|+... ..+............+++++|+|+|.+++|+|..+....+ +.+|+++++.+.+++.+++++...+.+.++
T Consensus       163 p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~  242 (490)
T 1fec_A          163 PQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLR  242 (490)
T ss_dssp             ECCCCSBTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCccceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHH
Confidence            76664221 1122222222222357899999999999999999986322 889999999999888899999999999999


Q ss_pred             hCCcEEEeCceEeecccCCC-ceeEEcCCCcEEeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCC
Q 022896          191 SKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQK  267 (290)
Q Consensus       191 ~~gi~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~  267 (290)
                      +.||++++++.|++++.+++ ...+.+.+|+++++|.||+|+|.+|+.++  ++..++  +++++|+|.||+++|+ +.|
T Consensus       243 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl--~~~~~G~I~Vd~~~~t-~~~  319 (490)
T 1fec_A          243 ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGV--EVAKNGAIKVDAYSKT-NVD  319 (490)
T ss_dssp             HTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTC--CBCTTSCBCCCTTCBC-SST
T ss_pred             hCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCc--cCCCCCCEEECCCCcc-CCC
Confidence            99999999999999987654 37788888889999999999999999874  455454  6678899999999998 799


Q ss_pred             CeEEeccccCcc
Q 022896          268 NIFAIGDITDIR  279 (290)
Q Consensus       268 ~vfa~Gd~~~~~  279 (290)
                      +|||+|||++.+
T Consensus       320 ~IyA~GD~~~~~  331 (490)
T 1fec_A          320 NIYAIGDVTDRV  331 (490)
T ss_dssp             TEEECGGGGCSC
T ss_pred             CEEEEeccCCCc
Confidence            999999999854

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=1.2e-37  Score=270.62  Aligned_cols=267  Identities=24%  Similarity=0.253  Sum_probs=200.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC---Cccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE---PSFGKR   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~---~~~~~~   65 (290)
                      .++||+|||||++|+++|++|++ |++|+|||+ ..+|+.|.....                      .+.   ..+...
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~  103 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWE  103 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            35899999999999999999986 999999999 455554332100                      000   000000


Q ss_pred             --------ccccc----cccc--ccceEEeeeeeeeecceEEec-CceEEeccEEEEccCCCCC-CCCchHH-HHHHHHH
Q 022896           66 --------SVINH----TDYL--VNGRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDP-VPKTRTE-RLNQYQA  128 (290)
Q Consensus        66 --------~~~~~----~~~~--~~~~~~~~~v~~~~~~~v~~~-~~~~~~~~~vi~a~G~~~~-~p~~~~~-~~~~~~~  128 (290)
                              ....+    ..++  .+++++.+.+..+++..+.+. ++..+.||++++|||+.|. .|..... .......
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~  183 (484)
T 3o0h_A          104 KLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNE  183 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSBCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccccHHH
Confidence                    00000    0111  145778888888888877776 7788999999999999877 6552211 1111111


Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccC
Q 022896          129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  208 (290)
Q Consensus       129 ~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~  208 (290)
                      .......+++++|+|+|.+++++|..+..  .+.+|+++.+.+.+++.+++.+...+.+.+++.|++++.++.|++++.+
T Consensus       184 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~  261 (484)
T 3o0h_A          184 IFDLEKLPKSIVIVGGGYIGVEFANIFHG--LGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQST  261 (484)
T ss_dssp             GGGCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEEC
T ss_pred             HHhHHhcCCcEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEee
Confidence            12222357899999999999999999986  5889999999999888899999999999999999999999999999888


Q ss_pred             CCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          209 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       209 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      ++++.+.+.+|+++++|.||+|+|.+|+..++.....+++++++|++.||+++|+ +.|+|||+|||++.+...
T Consensus       262 ~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~~~  334 (484)
T 3o0h_A          262 ENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTT-NVSHIWAVGDVTGHIQLT  334 (484)
T ss_dssp             SSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGTSCCCH
T ss_pred             CCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCC-CCCCEEEEEecCCCCcCH
Confidence            7778888889989999999999999999887432333446788999999999997 799999999999865433

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=2.3e-37  Score=267.90  Aligned_cols=263  Identities=16%  Similarity=0.192  Sum_probs=195.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh-----------------------hcCC----cccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-----------------------MVEP----SFGK   64 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~-----------------------~~~~----~~~~   64 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+++.+|+.|.....                       .+..    ....
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            5899999999999999999976 9999999999877765432110                       0000    0000


Q ss_pred             ccccc------------cccccc--cceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCCCCC---chHHHH
Q 022896           65 RSVIN------------HTDYLV--NGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK---TRTERL  123 (290)
Q Consensus        65 ~~~~~------------~~~~~~--~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~~p~---~~~~~~  123 (290)
                      ..+..            +..++.  +++++.+.+..+++..  +.+.+|  ..+.||++|+|||+.|..|+   .....+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v  161 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV  161 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCce
Confidence            00000            011111  3567777777777664  444566  68999999999999866554   211112


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHH-HhCCcEEEeCceE
Q 022896          124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERV  202 (290)
Q Consensus       124 ~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~~~~~~~v  202 (290)
                      .+..........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+ ++.||+++.++.|
T Consensus       162 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v  239 (468)
T 2qae_A          162 LSSTGALALPRVPKTMVVIGGGVIGLELGSVWAR--LGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKV  239 (468)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEE
T ss_pred             echHHHhhcccCCceEEEECCCHHHHHHHHHHHH--hCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            2222222222357999999999999999999986  589999999999998889999999999999 9999999999999


Q ss_pred             eecccCCCceeEEcC--CC--cEEeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896          203 NLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  276 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~  276 (290)
                      ++++.+++.+.+.+.  +|  +++++|.|++|+|.+|+.++  ++..++  +++++|+|.||+++|+ +.|+|||+|||+
T Consensus       240 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  316 (468)
T 2qae_A          240 VGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINV--AKNERGFVKIGDHFET-SIPDVYAIGDVV  316 (468)
T ss_dssp             EEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEECGGGB
T ss_pred             EEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCC--ccCCCCCEeECCCccc-CCCCEEEeeccC
Confidence            999876666666554  66  57999999999999999888  455554  5677899999999998 799999999999


Q ss_pred             C-ccc
Q 022896          277 D-IRV  280 (290)
Q Consensus       277 ~-~~~  280 (290)
                      + .+.
T Consensus       317 ~~~~~  321 (468)
T 2qae_A          317 DKGPM  321 (468)
T ss_dssp             SSSCS
T ss_pred             CCCCc
Confidence            8 443

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=1.6e-36  Score=262.91  Aligned_cols=265  Identities=26%  Similarity=0.327  Sum_probs=189.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--ccc------cccccccc---ccce
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRS------VINHTDYL---VNGR   78 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~---~~~~   78 (290)
                      ++||+|||||++|+++|++|++   +++|+|||+++.+++....+.........  ...      .....+++   .++.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            4799999999999999999963   89999999999865433222222111111  011      11111111   1334


Q ss_pred             E-Eeeeeeeeecc--eEEecC---ce--EEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHH--hcCCeE
Q 022896           79 I-VASPAINITEN--EVLTAE---GR--RVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKI--KSARSI  139 (290)
Q Consensus        79 ~-~~~~v~~~~~~--~v~~~~---~~--~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~--~~~~~v  139 (290)
                      + ....|..+++.  .+.+.+   +.  .+.||++|+|||++|..|+   ..      .....+.......+  ..++++
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v  162 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKA  162 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEE
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEE
Confidence            4 35778888765  344433   44  7899999999999865543   21      11222333333222  347899


Q ss_pred             EEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC
Q 022896          140 LIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST  218 (290)
Q Consensus       140 ~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~  218 (290)
                      +|+|+|.+++|+|..+... .+.+|+++++.+.+++ .+++.+.+.+.+.+++.|++++.++.|++++.+++.+.+.+.+
T Consensus       163 vViGgG~~g~e~A~~l~~~-~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~  241 (472)
T 3iwa_A          163 VIVGGGFIGLEMAVSLADM-WGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITD  241 (472)
T ss_dssp             EEECCSHHHHHHHHHHHHH-HCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEES
T ss_pred             EEECCCHHHHHHHHHHHHh-cCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeC
Confidence            9999999999999999862 2789999999998888 7889999999999999999999999999998767777788888


Q ss_pred             CcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          219 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       219 g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      |+++++|.||+|+|.+|+.+++...++  +++++|++.||+++|+ +.|+|||+|||+..+..
T Consensus       242 g~~i~aD~Vv~a~G~~p~~~l~~~~gl--~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~  301 (472)
T 3iwa_A          242 KRTLDADLVILAAGVSPNTQLARDAGL--ELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNL  301 (472)
T ss_dssp             SCEEECSEEEECSCEEECCHHHHHHTC--CBCTTCCEECCTTCBC-SSTTEEECGGGEEEEBT
T ss_pred             CCEEEcCEEEECCCCCcCHHHHHhCCc--cCCCCCCEEECCCccc-CCCCEEEeccceecccc
Confidence            889999999999999999888876655  5678899999999998 79999999999965543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.7e-36  Score=252.80  Aligned_cols=251  Identities=25%  Similarity=0.377  Sum_probs=188.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccc-cccccccccccc--cceEEee-eeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYLV--NGRIVAS-PAINI   87 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~-~v~~~   87 (290)
                      ..|++|||||++|+++|.+|++ | +|+|||+++...+....+...+..... ........+++.  +++++.+ .|+.+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~i   86 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   86 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEE
Confidence            3799999999999999999986 8 999999998754332222222211111 111122222222  3566655 58888


Q ss_pred             ecc--eEEecCceEEeccEEEEccCCCCCCCCchH-------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhh
Q 022896           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD  158 (290)
Q Consensus        88 ~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~  158 (290)
                      ++.  .+. .++.++.||++|+|||++|..|+..+       ..+.+.....+.+..+++++|+|+|.+|+|+|..+.. 
T Consensus        87 d~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~-  164 (367)
T 1xhc_A           87 DRGRKVVI-TEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE-  164 (367)
T ss_dssp             ETTTTEEE-ESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHH-
T ss_pred             ECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHh-
Confidence            876  455 67788999999999999876554211       1223333333334456999999999999999999987 


Q ss_pred             CCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          159 FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       159 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                       .+.+|+++++.+.+++ +++++.+.+.+.+++.||+++.++.|++++.  +  .+.+.+|+ +++|.|++|+|.+|+.+
T Consensus       165 -~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~--~v~~~~g~-i~~D~vi~a~G~~p~~~  237 (367)
T 1xhc_A          165 -AGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE--E--GVLTNSGF-IEGKVKICAIGIVPNVD  237 (367)
T ss_dssp             -TTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S--EEEETTEE-EECSCEEEECCEEECCH
T ss_pred             -CCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e--EEEECCCE-EEcCEEEECcCCCcCHH
Confidence             4889999999998888 8889999999999999999999999988872  2  36667887 99999999999999988


Q ss_pred             hhcccccccccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896          239 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       239 ~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                      +++..++.  .+ +| +.||+++|+ +.|+|||+|||+..
T Consensus       238 ll~~~gl~--~~-~g-i~Vd~~~~t-~~~~IyA~GD~a~~  272 (367)
T 1xhc_A          238 LARRSGIH--TG-RG-ILIDDNFRT-SAKDVYAIGDCAEY  272 (367)
T ss_dssp             HHHHTTCC--BS-SS-EECCTTSBC-SSTTEEECGGGEEB
T ss_pred             HHHhCCCC--CC-CC-EEECCCccc-CCCCEEEeEeeeec
Confidence            88877764  33 44 999999998 79999999999865

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=3e-36  Score=259.67  Aligned_cols=262  Identities=23%  Similarity=0.342  Sum_probs=192.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCc-ccccccccccccc---ccceEEee-ee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL---VNGRIVAS-PA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~-~v   84 (290)
                      ++||+|||||++|+++|++|++   +++|+|||+++.+++....+....... ..........+++   .++++..+ .+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            4899999999999999999974   789999999997664433332222111 1111111111111   24566654 78


Q ss_pred             eeeecc--eEEecCc-eEEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHHh--cCCeEEEEcCchhHHH
Q 022896           85 INITEN--EVLTAEG-RRVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKIK--SARSILIVGGGPTGVE  150 (290)
Q Consensus        85 ~~~~~~--~v~~~~~-~~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~~--~~~~v~iiG~g~~~~~  150 (290)
                      ..++..  .+.+.++ .++.||++|+|||+.|..|+   ..      ...............  .+++++|+|+|.+|+|
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E  162 (449)
T 3kd9_A           83 IEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIE  162 (449)
T ss_dssp             EEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHH
T ss_pred             EEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHH
Confidence            888765  4566666 48999999999999866554   21      112233344444444  6789999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEE
Q 022896          151 LAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL  229 (290)
Q Consensus       151 ~a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~  229 (290)
                      +|..+..  .+.+|+++++.+.+++. +++++...+.+.+++. ++++.++.+++++.++ .+.....+++++++|.|++
T Consensus       163 ~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~  238 (449)
T 3kd9_A          163 MAEAFAA--QGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVIL  238 (449)
T ss_dssp             HHHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEE
T ss_pred             HHHHHHh--CCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEE
Confidence            9999987  48999999999998887 8999999999999999 9999999998887655 3333345677899999999


Q ss_pred             ccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          230 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       230 a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      |+|.+|+.++++..++  +++++|++.||+++|+ +.|+|||+|||+..++.
T Consensus       239 a~G~~p~~~l~~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~  287 (449)
T 3kd9_A          239 ATGIKPNIELAKQLGV--RIGETGAIWTNEKMQT-SVENVYAAGDVAETRHV  287 (449)
T ss_dssp             CSCEEECCHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBCEEBT
T ss_pred             eeCCccCHHHHHhCCc--cCCCCCCEEECCCCcc-CCCCEEEeeeeeeeccc
Confidence            9999999998877665  5678899999999998 79999999999976543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=9.7e-37  Score=265.41  Aligned_cols=267  Identities=20%  Similarity=0.163  Sum_probs=203.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC--------Ccccchhhhhh--------------hc---CCccc---
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLRA--------------MV---EPSFG---   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~~~~~~~~~~--------------~~---~~~~~---   63 (290)
                      .||++||||||+|++||.++++ |.+|+|||+..        .+|+.+.....              ..   ...+.   
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            4899999999999999999987 99999999754        24543211100              00   00000   


Q ss_pred             ccccccc------------------cccc--ccceEEeeeeeeeecceEEe------cCceEEeccEEEEccCCCCCCCC
Q 022896           64 KRSVINH------------------TDYL--VNGRIVASPAINITENEVLT------AEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        64 ~~~~~~~------------------~~~~--~~~~~~~~~v~~~~~~~v~~------~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      ......+                  ...+  .+++++.+....+++.++..      .+..+++++++|+|||++|.+|+
T Consensus       122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~  201 (542)
T 4b1b_A          122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPD  201 (542)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCS
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCC
Confidence            0000000                  0011  14578889988988886543      24467999999999999998885


Q ss_pred             ---chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCc
Q 022896          118 ---TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  194 (290)
Q Consensus       118 ---~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  194 (290)
                         .....+......+.....+++++|||+|+.|+|+|..+..  .+.+|+++.+. .+++.+++++...+.+.+++.|+
T Consensus       202 ~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~--lG~~VTii~~~-~~L~~~D~ei~~~l~~~l~~~gi  278 (542)
T 4b1b_A          202 DVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNS--LGYDVTVAVRS-IVLRGFDQQCAVKVKLYMEEQGV  278 (542)
T ss_dssp             SSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             cccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHh--cCCeEEEeccc-ccccccchhHHHHHHHHHHhhcc
Confidence               2223333344444444578999999999999999999986  59999999874 67788999999999999999999


Q ss_pred             EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcE-EecCCccccCCCCeEEec
Q 022896          195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGML-MVDENLRVKGQKNIFAIG  273 (290)
Q Consensus       195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~-~v~~~~~~~~~~~vfa~G  273 (290)
                      +++.++.++.++..++.+.+.+.+++++.+|.|++|+|.+||.+.|....+++.++.++.+ .+|+++|| +.|+|||+|
T Consensus       279 ~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T-s~p~IyAiG  357 (542)
T 4b1b_A          279 MFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT-NIPSIFAVG  357 (542)
T ss_dssp             EEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC-SSTTEEECT
T ss_pred             eeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc-cCCCeEEec
Confidence            9999999999998888888888888899999999999999999998887777777777665 67778887 899999999


Q ss_pred             cccCc-ccccc
Q 022896          274 DITDI-RVSAS  283 (290)
Q Consensus       274 d~~~~-~~~~~  283 (290)
                      ||++. |..++
T Consensus       358 Dv~~~~p~La~  368 (542)
T 4b1b_A          358 DVAENVPELAP  368 (542)
T ss_dssp             TSBTTCCCCHH
T ss_pred             cccCCchhHHH
Confidence            99965 44443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=1.4e-36  Score=262.96  Aligned_cols=263  Identities=21%  Similarity=0.255  Sum_probs=194.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh-----------------------hcCCccc---cc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-----------------------MVEPSFG---KR   65 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~-----------------------~~~~~~~---~~   65 (290)
                      ++||+|||||++|+++|++|++ |++|+|||++ .+|+.|.....                       .+.....   ..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS   82 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHH
Confidence            6899999999999999999976 9999999998 45655432110                       0100000   00


Q ss_pred             ccc-------------ccccccc---cceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCCCCC---chHHH
Q 022896           66 SVI-------------NHTDYLV---NGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK---TRTER  122 (290)
Q Consensus        66 ~~~-------------~~~~~~~---~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~~p~---~~~~~  122 (290)
                      .+.             .+.+++.   +++++.+.+..+++..  +.+.++  ..+.||++|+|||++|..|+   .....
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~~  162 (467)
T 1zk7_A           83 KLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESP  162 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTTTSC
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCCcCc
Confidence            000             0112222   5677778888888764  445566  68999999999999866554   21111


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      +.+..........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++ +++.+...+.+.+++.|++++.++.|
T Consensus       163 ~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v  239 (467)
T 1zk7_A          163 YWTSTEALASDTIPERLAVIGSSVVALELAQAFAR--LGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQA  239 (467)
T ss_dssp             CBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCCE
T ss_pred             eecHHHHhcccccCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCEE
Confidence            11222233333457999999999999999999987  4889999999998888 88899999999999999999999999


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      ++++.+++...+.+. +.++++|.||+|+|.+|+.+++.....+++++++|++.||+++++ +.|+|||+|||+..+..
T Consensus       240 ~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~  316 (467)
T 1zk7_A          240 SQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTDQPQF  316 (467)
T ss_dssp             EEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSTTBSSCCC
T ss_pred             EEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCccc-CCCCEEEEeccCCCccc
Confidence            988876555566665 458999999999999999876432223345677899999999998 79999999999987653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=2.3e-37  Score=268.61  Aligned_cols=268  Identities=18%  Similarity=0.222  Sum_probs=197.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC------Ccccchhhhhhh---------------cC--Cccc----
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE------YFEITWASLRAM---------------VE--PSFG----   63 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~------~~~~~~~~~~~~---------------~~--~~~~----   63 (290)
                      .++||+|||||++|+++|++|++ |++|+|||+++      .+|+.|......               ..  ..+.    
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            36999999999999999999986 99999999987      244333211000               00  0000    


Q ss_pred             -----ccccccc------------cccc--ccceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCCCCC---
Q 022896           64 -----KRSVINH------------TDYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK---  117 (290)
Q Consensus        64 -----~~~~~~~------------~~~~--~~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~~p~---  117 (290)
                           .......            ..++  .+++++.+.+..+++..  +...++  ..+.||++|+|||+.|..|+   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~  161 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAP  161 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence                 0000000            0011  14567777777777664  444555  57999999999999876443   


Q ss_pred             chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEE
Q 022896          118 TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  197 (290)
                      .....+.+..........+++++|+|+|.+++|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.||+++
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~  239 (476)
T 3lad_A          162 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKIL  239 (476)
T ss_dssp             CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred             CCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence            1111122222222223457999999999999999999986  48999999999999988999999999999999999999


Q ss_pred             eCceEeecccCCCceeEEcCCC---cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEecc
Q 022896          198 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD  274 (290)
Q Consensus       198 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd  274 (290)
                      .++.+++++.+++...+.+.++   +++++|.|++|+|..|+.+++.....+++++++|++.||+++|+ +.|+|||+||
T Consensus       240 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD  318 (476)
T 3lad_A          240 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGD  318 (476)
T ss_dssp             ETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGG
T ss_pred             ECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCccc-CCCCEEEEEc
Confidence            9999999988777766666544   57999999999999999876433334457788999999999997 7999999999


Q ss_pred             ccCccccc
Q 022896          275 ITDIRVSA  282 (290)
Q Consensus       275 ~~~~~~~~  282 (290)
                      |++.+...
T Consensus       319 ~~~~~~~~  326 (476)
T 3lad_A          319 VVRGAMLA  326 (476)
T ss_dssp             GSSSCCCH
T ss_pred             cCCCcccH
Confidence            99766543

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=2.2e-37  Score=267.40  Aligned_cols=262  Identities=18%  Similarity=0.206  Sum_probs=195.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC--Cccccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE--PSFGKRSV   67 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~--~~~~~~~~   67 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+++ +|+.|.....                      .+.  .......+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   84 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKL   84 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHH
Confidence            5899999999999999999976 99999999988 5554321100                      000  00000000


Q ss_pred             cc------------ccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCC-chHH-HHHHHHHHHH
Q 022896           68 IN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK-TRTE-RLNQYQAENQ  131 (290)
Q Consensus        68 ~~------------~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~-~~~~-~~~~~~~~~~  131 (290)
                      ..            ...++  .+++++.+.+..+++..+.+. +.++.||++|+|||++|..|+ .... .+.+......
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~~  163 (464)
T 2eq6_A           85 GGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG-GERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALK  163 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TEEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHHh
Confidence            00            01112  246777777777777777765 678999999999999977654 2111 1112222222


Q ss_pred             HHh-cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC
Q 022896          132 KIK-SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  210 (290)
Q Consensus       132 ~~~-~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~  210 (290)
                      ... .+++++|||+|..|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.+++++.+++
T Consensus       164 l~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  241 (464)
T 2eq6_A          164 VEEGLPKRLLVIGGGAVGLELGQVYRR--LGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKD  241 (464)
T ss_dssp             GGGCCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT
T ss_pred             hhhhcCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCC
Confidence            223 57999999999999999999986  489999999999888888899999999999999999999999999887666


Q ss_pred             ceeEEcC-C--Cc--EEeccEEEEccCCCCCchhh--cccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          211 SDTYLTS-T--GD--TINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       211 ~~~v~~~-~--g~--~~~~d~vv~a~G~~~~~~~l--~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      .+.+.+. +  |+  ++++|.|++|+|.+|+.+++  +..++  .++++|++.||+++|+ +.|+|||+|||++.+..
T Consensus       242 ~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~l  316 (464)
T 2eq6_A          242 GLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGV--KVDERGFIRVNARMET-SVPGVYAIGDAARPPLL  316 (464)
T ss_dssp             EEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTC--CBCTTSCBCCCTTCBC-SSTTEEECGGGTCSSCC
T ss_pred             EEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCc--eecCCCCEEECCCccc-CCCCEEEEeccCCCccc
Confidence            6666654 5  76  89999999999999998874  44444  5678899999999997 79999999999986543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=7.4e-36  Score=264.50  Aligned_cols=263  Identities=19%  Similarity=0.308  Sum_probs=198.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--cccccccccc-cc--cceE-Eeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDY-LV--NGRI-VASPA   84 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~--~~~~-~~~~v   84 (290)
                      +||+|||||++|+++|++|++   +++|+|||+++.+++....+.........  ........++ ..  ++.+ ....|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            689999999999999999964   79999999999877554433333222211  1112221121 11  3444 36788


Q ss_pred             eeeecc--eEEecC---c--eEEeccEEEEccCCCCCCC---Cch------HHHHHHHHHHHHH--HhcCCeEEEEcCch
Q 022896           85 INITEN--EVLTAE---G--RRVVYDYLVIATGHKDPVP---KTR------TERLNQYQAENQK--IKSARSILIVGGGP  146 (290)
Q Consensus        85 ~~~~~~--~v~~~~---~--~~~~~~~vi~a~G~~~~~p---~~~------~~~~~~~~~~~~~--~~~~~~v~iiG~g~  146 (290)
                      +.+++.  .+.+.+   +  .++.||++|+|||++|..|   +..      ...+.........  ...+++++|+|+|.
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~  161 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGF  161 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCH
Confidence            888765  344332   3  3789999999999985544   321      1122222223222  23578999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeeccc-------------------
Q 022896          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV-------------------  207 (290)
Q Consensus       147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~-------------------  207 (290)
                      +|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+++.++.+++++.                   
T Consensus       162 ~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  239 (565)
T 3ntd_A          162 IGLEMMESLHH--LGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH  239 (565)
T ss_dssp             HHHHHHHHHHH--TTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCC
T ss_pred             HHHHHHHHHHh--cCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccccccccc
Confidence            99999999986  489999999999988888999999999999999999999999998876                   


Q ss_pred             CCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          208 SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       208 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +++.+.+.+.+|+++++|.||+|+|.+|+.++++..++  +++++|++.||+++|+ +.|+|||+|||+..+..
T Consensus       240 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~  310 (565)
T 3ntd_A          240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGL--AIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDF  310 (565)
T ss_dssp             TTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTC--CBCTTSSBCCCTTCBC-SSTTEEECGGGBCEEBT
T ss_pred             CCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCc--ccCCCCCEEECCCccc-CCCCEEEeeeeEeeccc
Confidence            34556777788889999999999999999888877665  5678899999999998 79999999999975543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=1.5e-35  Score=250.49  Aligned_cols=258  Identities=21%  Similarity=0.282  Sum_probs=193.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhhhhhhcCCcc-cccccc-cccccc--ccceEE-eeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVI-NHTDYL--VNGRIV-ASPA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~--~~~~~~-~~~v   84 (290)
                      ++||+|||||++|+++|.+|++ |  .+|+++|++....+....+........ ..+... ....++  .+++++ ...+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            5899999999999999999976 6  679999998732221111211111111 111111 112221  135565 4567


Q ss_pred             eeeecc--eEEecCceEEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 022896           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAG  153 (290)
Q Consensus        85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~  153 (290)
                      ..+++.  .+.+.+ ..+.||++++|||++|..|+   ..      ...+.++......+..+++++|+|+|.+|+++|.
T Consensus        84 ~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~  162 (384)
T 2v3a_A           84 TGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFAN  162 (384)
T ss_dssp             CEEEGGGTEEEETT-EEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHH
T ss_pred             EEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHH
Confidence            777763  566654 47999999999999866553   11      1233444444445566899999999999999999


Q ss_pred             HHhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccC
Q 022896          154 EIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG  232 (290)
Q Consensus       154 ~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G  232 (290)
                      .+..  .+.+|+++++.+.+++. +++.+.+.+.+.+++.|++++.++.|++++.+++...+.+.+|+++++|.||+|+|
T Consensus       163 ~l~~--~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G  240 (384)
T 2v3a_A          163 DLSS--GGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVG  240 (384)
T ss_dssp             HHHH--TTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred             HHHh--CCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcC
Confidence            9987  48999999999887766 47788999999999999999999999999876666778888898999999999999


Q ss_pred             CCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896          233 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       233 ~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                      .+|+.++++..++.  .+ +| +.||+++|+ +.|+|||+|||+..
T Consensus       241 ~~p~~~l~~~~g~~--~~-~g-i~vd~~~~t-~~~~IyA~GD~~~~  281 (384)
T 2v3a_A          241 LRPRTELAFAAGLA--VN-RG-IVVDRSLRT-SHANIYALGDCAEV  281 (384)
T ss_dssp             EEECCHHHHHTTCC--BS-SS-EEECTTCBC-SSTTEEECGGGEEE
T ss_pred             CCcCHHHHHHCCCC--CC-CC-EEECCCCCC-CCCCEEEeeeeeeE
Confidence            99998888877764  34 57 999999997 79999999999964

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=7.5e-37  Score=265.11  Aligned_cols=264  Identities=19%  Similarity=0.208  Sum_probs=195.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh------------------------cCC---cccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM------------------------VEP---SFGK   64 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~------------------------~~~---~~~~   64 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+++.+|+.|......                        +..   ....
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   85 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNL   85 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCH
Confidence            5899999999999999999976 99999999998777665321100                        000   0000


Q ss_pred             ccccc------------ccccc--ccceEEeeeeeeeecce--EEecC-c-eEEeccEEEEccCCCCCCCC---chHHHH
Q 022896           65 RSVIN------------HTDYL--VNGRIVASPAINITENE--VLTAE-G-RRVVYDYLVIATGHKDPVPK---TRTERL  123 (290)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~v~~~~~~~--v~~~~-~-~~~~~~~vi~a~G~~~~~p~---~~~~~~  123 (290)
                      ..+..            +..++  .+++++.+.+..+++..  +.+.+ + .++.||++|+|||++|..|+   .....+
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~v  165 (474)
T 1zmd_A           86 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI  165 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCcE
Confidence            00000            01111  14567777777777664  44445 3 57999999999999866554   221112


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       124 ~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      .+..........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++ .+++++...+.+.+++.||+++.++.|
T Consensus       166 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  243 (474)
T 1zmd_A          166 VSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQR--LGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKV  243 (474)
T ss_dssp             ECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             EcHHHHhhccccCceEEEECCCHHHHHHHHHHHH--cCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceE
Confidence            2222222222346899999999999999999986  4899999999999888 788999999999999999999999999


Q ss_pred             eecccCCCc-eeEE-----cCCCcEEeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCCCeEEecc
Q 022896          203 NLDSVSEGS-DTYL-----TSTGDTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD  274 (290)
Q Consensus       203 ~~i~~~~~~-~~v~-----~~~g~~~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd  274 (290)
                      ++++.++++ +.+.     ..+++++++|.|++|+|.+|+.++  ++..++  +++++|+|.||+++|+ +.|+|||+||
T Consensus       244 ~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~~~~IyA~GD  320 (474)
T 1zmd_A          244 TGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGI--ELDPRGRIPVNTRFQT-KIPNIYAIGD  320 (474)
T ss_dssp             EEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTC--CCCTTSCCCCCTTCBC-SSTTEEECGG
T ss_pred             EEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCC--ccCCCCCEEECcCCcc-CCCCEEEeee
Confidence            999876655 6665     356678999999999999999887  455554  5677899999999997 7999999999


Q ss_pred             ccCcccc
Q 022896          275 ITDIRVS  281 (290)
Q Consensus       275 ~~~~~~~  281 (290)
                      |+..+..
T Consensus       321 ~~~~~~~  327 (474)
T 1zmd_A          321 VVAGPML  327 (474)
T ss_dssp             GSSSCCC
T ss_pred             cCCCCcc
Confidence            9987643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.4e-36  Score=264.62  Aligned_cols=257  Identities=21%  Similarity=0.241  Sum_probs=183.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCC--ccccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEP--SFGKRSV   67 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~--~~~~~~~   67 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+++ +|+.|.....                      .+..  ......+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   80 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHH
Confidence            5899999999999999999976 99999999985 5554421100                      0000  0000000


Q ss_pred             --------cc----ccccc--ccceEEeeeeeeeecceEEecC-------------ceEEeccEEEEccCCCCCCCCchH
Q 022896           68 --------IN----HTDYL--VNGRIVASPAINITENEVLTAE-------------GRRVVYDYLVIATGHKDPVPKTRT  120 (290)
Q Consensus        68 --------~~----~~~~~--~~~~~~~~~v~~~~~~~v~~~~-------------~~~~~~~~vi~a~G~~~~~p~~~~  120 (290)
                              ..    +..++  .+++++.+.+..+++..+...+             +..+.||++|+|||+.|..|+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~G  160 (500)
T 1onf_A           81 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKG  160 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCCCC
Confidence                    00    11111  2457777777667666555533             567999999999999977665221


Q ss_pred             -HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeC
Q 022896          121 -ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       121 -~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                       ............ ..+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+++.+
T Consensus       161 ~~~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~  237 (500)
T 1onf_A          161 IENTISSDEFFNI-KESKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTF  237 (500)
T ss_dssp             GGGCEEHHHHTTC-CCCSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECS
T ss_pred             CCcccCHHHHhcc-CCCCeEEEECChHHHHHHHHHHHH--cCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEEC
Confidence             111111222111 127899999999999999999986  5899999999999988899999999999999999999999


Q ss_pred             ceEeecccCCCc-eeEEcCCCcE-EeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCCCeEEeccc
Q 022896          200 ERVNLDSVSEGS-DTYLTSTGDT-INADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  275 (290)
Q Consensus       200 ~~v~~i~~~~~~-~~v~~~~g~~-~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~  275 (290)
                      +.|++++.++++ ..+.+.+|++ +++|.|++|+|..|+.+.  ++..++  ++ ++|++.||+++|+ +.|+|||+|||
T Consensus       238 ~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~--~~-~~G~i~vd~~~~t-~~~~iya~GD~  313 (500)
T 1onf_A          238 ADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNV--ET-NNNYIVVDENQRT-SVNNIYAVGDC  313 (500)
T ss_dssp             CCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTC--CB-SSSCEEECTTCBC-SSSSEEECSTT
T ss_pred             CEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCc--cc-cCCEEEECCCccc-CCCCEEEEecc
Confidence            999998765433 6778888887 999999999999999864  455555  45 6899999999997 79999999999


Q ss_pred             cC
Q 022896          276 TD  277 (290)
Q Consensus       276 ~~  277 (290)
                      +.
T Consensus       314 ~~  315 (500)
T 1onf_A          314 CM  315 (500)
T ss_dssp             EE
T ss_pred             cc
Confidence            94

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=2.9e-35  Score=251.79  Aligned_cols=262  Identities=21%  Similarity=0.334  Sum_probs=196.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCCCcccchhhhhh-hcCCc-cccccccccccccc--cceEEe-eee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLRA-MVEPS-FGKRSVINHTDYLV--NGRIVA-SPA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~--~~~~~~-~~v   84 (290)
                      .+||+|||||++|+++|.+|++ |.  +|+|||+++...+....+.. ..... ..........+++.  +++++. ..|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            5899999999999999999976 76  79999998765533221111 11111 11111111122222  345554 467


Q ss_pred             eeeecc--eEEecCceEEeccEEEEccCCCCCCCCc---hHHH---------HHHHHHHHHHHhcCCeEEEEcCchhHHH
Q 022896           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKT---RTER---------LNQYQAENQKIKSARSILIVGGGPTGVE  150 (290)
Q Consensus        85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~~---~~~~---------~~~~~~~~~~~~~~~~v~iiG~g~~~~~  150 (290)
                      ..+++.  .+.+.++..+.||++|+|||++|..|+.   ....         ..++..+...+..+++++|+|+|.+|+|
T Consensus        84 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E  163 (431)
T 1q1r_A           84 TAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLE  163 (431)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHH
T ss_pred             EEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHH
Confidence            888764  6777788889999999999999776652   2111         2222223333446899999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeeccc--CCCce-eEEcCCCcEEeccE
Q 022896          151 LAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSV--SEGSD-TYLTSTGDTINADC  226 (290)
Q Consensus       151 ~a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~--~~~~~-~v~~~~g~~~~~d~  226 (290)
                      +|..+..  .+.+|+++++.+.+++. +++++...+.+.+++.|++++.++.+++++.  +++.+ .+.+.+|+++++|.
T Consensus       164 ~A~~l~~--~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~  241 (431)
T 1q1r_A          164 VAATAIK--ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADL  241 (431)
T ss_dssp             HHHHHHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSE
T ss_pred             HHHHHHh--CCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCE
Confidence            9999987  48899999999887764 7888999999999999999999999998876  44443 67788898999999


Q ss_pred             EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          227 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       227 vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      ||+|+|.+|+.++++..++..  + +| +.||+++|+ +.|+|||+|||+..+.+
T Consensus       242 Vv~a~G~~p~~~l~~~~gl~~--~-~g-i~Vd~~~~t-s~~~IyA~GD~~~~~~~  291 (431)
T 1q1r_A          242 VIAGIGLIPNCELASAAGLQV--D-NG-IVINEHMQT-SDPLIMAVGDCARFHSQ  291 (431)
T ss_dssp             EEECCCEEECCHHHHHTTCCB--S-SS-EECCTTSBC-SSTTEEECGGGEEEEET
T ss_pred             EEECCCCCcCcchhhccCCCC--C-CC-EEECCCccc-CCCCEEEEEeEEEEccc
Confidence            999999999999988877643  3 45 999999998 79999999999998754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=4.5e-37  Score=266.82  Aligned_cols=264  Identities=14%  Similarity=0.189  Sum_probs=194.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC---Ccccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE---PSFGKRS   66 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~---~~~~~~~   66 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+++.+++.+.....                      .+.   .......
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDM   85 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence            5899999999999999999976 9999999998777654321100                      000   0000000


Q ss_pred             ccc------------ccccc--ccceEEeeeeeeeecceEEe--cCc------------eEEeccEEEEccCCCCCCCC-
Q 022896           67 VIN------------HTDYL--VNGRIVASPAINITENEVLT--AEG------------RRVVYDYLVIATGHKDPVPK-  117 (290)
Q Consensus        67 ~~~------------~~~~~--~~~~~~~~~v~~~~~~~v~~--~~~------------~~~~~~~vi~a~G~~~~~p~-  117 (290)
                      +..            +..++  .+++++.+.+..++...+..  .++            .++.||++|+|||++|..|+ 
T Consensus        86 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~~~  165 (482)
T 1ojt_A           86 LRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPF  165 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCCCC
Confidence            000            01111  24566666666666654433  344            57999999999999976554 


Q ss_pred             chH-HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEE
Q 022896          118 TRT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  196 (290)
Q Consensus       118 ~~~-~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  196 (290)
                      ... ..+.+..........+++++|+|+|.+|+|+|..+...  +.+|+++++.+.+++.+++++.+.+.+.+++.||++
T Consensus       166 i~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~--G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i  243 (482)
T 1ojt_A          166 IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNI  243 (482)
T ss_dssp             CCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEE
T ss_pred             CCccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHc--CCeEEEEEECCccccccCHHHHHHHHHHHHhcCCEE
Confidence            111 11222222222223479999999999999999999874  889999999999998899999999999999999999


Q ss_pred             EeCceEeecccCCCceeEEcCC----CcEEeccEEEEccCCCCCchhh--cccccccccCCCCcEEecCCccccCCCCeE
Q 022896          197 KLGERVNLDSVSEGSDTYLTST----GDTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIF  270 (290)
Q Consensus       197 ~~~~~v~~i~~~~~~~~v~~~~----g~~~~~d~vv~a~G~~~~~~~l--~~~~~~~~~~~~g~~~v~~~~~~~~~~~vf  270 (290)
                      +.++.|++++.+++...+.+.+    |+++++|.|++|+|..|+.+++  +..++  +++++|+|.||+++|+ +.|+||
T Consensus       244 ~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl--~~~~~G~i~vd~~~~t-~~~~Iy  320 (482)
T 1ojt_A          244 MVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGV--AVTDRGFIEVDKQMRT-NVPHIY  320 (482)
T ss_dssp             ECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTC--CCCTTSCCCCCTTSBC-SSTTEE
T ss_pred             EECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCc--eeCCCCCEeeCCCccc-CCCCEE
Confidence            9999999988766666666655    6789999999999999999874  55554  5677899999999998 799999


Q ss_pred             EeccccCcccc
Q 022896          271 AIGDITDIRVS  281 (290)
Q Consensus       271 a~Gd~~~~~~~  281 (290)
                      |+|||++.+..
T Consensus       321 A~GD~~~~~~l  331 (482)
T 1ojt_A          321 AIGDIVGQPML  331 (482)
T ss_dssp             ECGGGTCSSCC
T ss_pred             EEEcccCCCcc
Confidence            99999986543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.7e-37  Score=266.31  Aligned_cols=260  Identities=20%  Similarity=0.206  Sum_probs=195.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc--------------------CCccccccc----
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV--------------------EPSFGKRSV----   67 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~--------------------~~~~~~~~~----   67 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+++.+|+.|.......                    ...+.....    
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRK   83 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence            5899999999999999999976 999999998888887765321110                    000000000    


Q ss_pred             ---------ccccccc--ccceEEeeeeeeeecce--EEecCceE--EeccEEEEccCCCCCCCCchH-HHHHHHHHHH-
Q 022896           68 ---------INHTDYL--VNGRIVASPAINITENE--VLTAEGRR--VVYDYLVIATGHKDPVPKTRT-ERLNQYQAEN-  130 (290)
Q Consensus        68 ---------~~~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~~~--~~~~~vi~a~G~~~~~p~~~~-~~~~~~~~~~-  130 (290)
                               ..+..++  .+++++.+.+..+++..  +...++..  +.||++|+|||+.|..|+..+ ..+....... 
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t~~~~~~  163 (466)
T 3l8k_A           84 DYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFG  163 (466)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBCHHHHHS
T ss_pred             HhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEeHHHHHH
Confidence                     1111122  24577888888888773  55667777  999999999999866554211 1222222222 


Q ss_pred             ---HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-ChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          131 ---QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-GPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       131 ---~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                         .....+++++|+|+|.+++|+|..+..  .+.+|+++++.+.+++.+ ++++.+.+.+.++   |+++.++.|++++
T Consensus       164 ~~~~l~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~  238 (466)
T 3l8k_A          164 YKTSFRKLPQDMVIIGAGYIGLEIASIFRL--MGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVK  238 (466)
T ss_dssp             TTCSCCSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEE
T ss_pred             HHHHHhhCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEE
Confidence               122347899999999999999999987  589999999999988877 8888888888776   9999999999888


Q ss_pred             cCC-CceeEEcC--CCc--EEeccEEEEccCCCCCchh-hcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          207 VSE-GSDTYLTS--TGD--TINADCHFLCTGKPVGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       207 ~~~-~~~~v~~~--~g~--~~~~d~vv~a~G~~~~~~~-l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .++ +++.+.+.  +|+  ++++|.|++|+|.+|+.++ ++..++  +++++| +.||+++|+ +.|+|||+|||++.+.
T Consensus       239 ~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl--~~~~~G-i~vd~~~~t-~~~~Iya~GD~~~~~~  314 (466)
T 3l8k_A          239 KIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGL--SISKTG-IVVDETMKT-NIPNVFATGDANGLAP  314 (466)
T ss_dssp             EEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTC--CBCSSS-BCCCTTCBC-SSTTEEECGGGTCSCC
T ss_pred             EcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCc--eeCCCC-EeECCCccC-CCCCEEEEEecCCCCc
Confidence            766 66667766  565  7999999999999999884 455554  667889 999999998 8999999999998754


Q ss_pred             c
Q 022896          281 S  281 (290)
Q Consensus       281 ~  281 (290)
                      .
T Consensus       315 ~  315 (466)
T 3l8k_A          315 Y  315 (466)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=2.3e-36  Score=262.38  Aligned_cols=266  Identities=20%  Similarity=0.217  Sum_probs=193.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCC---ccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEP---SFGKR   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~---~~~~~   65 (290)
                      .++||+|||||++|+++|++|++ |++|+|||++. +|+.|.....                      .+..   .+...
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   97 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR   97 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            35999999999999999999986 99999999874 4544322100                      0000   00000


Q ss_pred             ccc--------cc----cccc--ccceEEeeeeeeeecc--eEEecCceEEeccEEEEccCCCCCCC---CchHH-HHHH
Q 022896           66 SVI--------NH----TDYL--VNGRIVASPAINITEN--EVLTAEGRRVVYDYLVIATGHKDPVP---KTRTE-RLNQ  125 (290)
Q Consensus        66 ~~~--------~~----~~~~--~~~~~~~~~v~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p---~~~~~-~~~~  125 (290)
                      ...        .+    ...+  .+++++.+.+..+++.  .+. .++.++.||++|+|||+.|..|   +..+. ...+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~~~~~  176 (478)
T 3dk9_A           98 VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGASLGIT  176 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGGGSBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCceeEc
Confidence            000        00    0001  1456777777777765  344 5677899999999999987666   32211 1111


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      ..........+++++|||+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.++++
T Consensus       177 ~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i  254 (478)
T 3dk9_A          177 SDGFFQLEELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV  254 (478)
T ss_dssp             HHHHTTCCSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred             hHHhhchhhcCccEEEECCCHHHHHHHHHHHH--cCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence            22222222357999999999999999999987  4899999999999888899999999999999999999999999998


Q ss_pred             ccCCCc--eeEEcCC---C----cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896          206 SVSEGS--DTYLTST---G----DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  276 (290)
Q Consensus       206 ~~~~~~--~~v~~~~---g----~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~  276 (290)
                      +.++++  +.+.+.+   |    +++++|.|++|+|..|+.+.+....++++++++|++.||+++++ +.|+|||+|||+
T Consensus       255 ~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  333 (478)
T 3dk9_A          255 KKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVC  333 (478)
T ss_dssp             EECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC-SSTTEEECGGGG
T ss_pred             EEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc-CCCCEEEEEecC
Confidence            876555  5565554   2    57899999999999999875433334446788999999999998 799999999999


Q ss_pred             Cccccc
Q 022896          277 DIRVSA  282 (290)
Q Consensus       277 ~~~~~~  282 (290)
                      +.+...
T Consensus       334 ~~~~~~  339 (478)
T 3dk9_A          334 GKALLT  339 (478)
T ss_dssp             CSSCCH
T ss_pred             CCCccH
Confidence            766543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=7.6e-37  Score=249.81  Aligned_cols=254  Identities=17%  Similarity=0.176  Sum_probs=184.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCc-c-ccccccccccc---cccceEEeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPS-F-GKRSVINHTDY---LVNGRIVASPAIN   86 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~---~~~~~~~~~~v~~   86 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||++...+..+.......... . ..+....+.+.   ..++.++.+.|+.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~   81 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTD   81 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEE
Confidence            5899999999999999999976 999999999875443322111111111 0 01111112222   2245677888888


Q ss_pred             eecc----eEEecCceEEeccEEEEccCCCCCCC---CchH---HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHh
Q 022896           87 ITEN----EVLTAEGRRVVYDYLVIATGHKDPVP---KTRT---ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA  156 (290)
Q Consensus        87 ~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p---~~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~  156 (290)
                      ++..    .+.+.++.++.||++|+|+|..|..|   +...   ...+...........+++++|+|+|.+++++|..|.
T Consensus        82 i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~  161 (297)
T 3fbs_A           82 AKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLP  161 (297)
T ss_dssp             EEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGG
T ss_pred             EEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhh
Confidence            8765    57777888899999999999986544   3211   111111112223346899999999999999999999


Q ss_pred             hhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          157 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      ..  + +|+++.+.+.       .+...+.+.+++.||+++. +.++++..++   .+.+.+|+++++|.+++|+|+.|+
T Consensus       162 ~~--g-~v~~v~~~~~-------~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~p~  227 (297)
T 3fbs_A          162 DW--G-ETTFFTNGIV-------EPDADQHALLAARGVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLRIT  227 (297)
T ss_dssp             GT--S-EEEEECTTTC-------CCCHHHHHHHHHTTCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEECC
T ss_pred             hc--C-cEEEEECCCC-------CCCHHHHHHHHHCCcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcccC
Confidence            74  5 9999988765       3345567788999999995 8888776543   677888999999999999999999


Q ss_pred             chhhcccccccccCCCC-cEEecCCccccCCCCeEEeccccCcccc
Q 022896          237 SDWLKDTILKDSLDTHG-MLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       237 ~~~l~~~~~~~~~~~~g-~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      .++++..++.....++| ++.+|+++++ ++|+|||+|||++.+..
T Consensus       228 ~~~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~~~~~~~  272 (297)
T 3fbs_A          228 VDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVARPAGS  272 (297)
T ss_dssp             CSCHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGGGCTTCC
T ss_pred             chhHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeecCCchHH
Confidence            89988877754333567 8999999997 79999999999996443

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=9.1e-37  Score=264.50  Aligned_cols=265  Identities=19%  Similarity=0.228  Sum_probs=195.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-----------------------cC---Ccccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-----------------------VE---PSFGK   64 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-----------------------~~---~~~~~   64 (290)
                      .++||+|||||++|+++|.+|++ |++|+|||+++.+|+.|......                       +.   .....
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL   84 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            46999999999999999999986 99999999998777654321100                       00   00000


Q ss_pred             ccccc------------ccccc--ccceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCCCCC---chHHHH
Q 022896           65 RSVIN------------HTDYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK---TRTERL  123 (290)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~~p~---~~~~~~  123 (290)
                      ..+..            +..++  .+++++.+.+..++++.  +.+.+|  ..+.||++|+|||++|..|+   .....+
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~v  164 (470)
T 1dxl_A           85 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI  164 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCcccE
Confidence            00000            01111  13566666666666664  334456  68999999999999876554   211112


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          124 NQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       124 ~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      .+..........+++++|+|+|.+|+|+|..+...  +.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.|+
T Consensus       165 ~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~  242 (470)
T 1dxl_A          165 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVV  242 (470)
T ss_dssp             ECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEE
T ss_pred             EeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence            22222222223579999999999999999999874  8899999999998888899999999999999999999999999


Q ss_pred             ecccCCCceeEEcC---CC--cEEeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896          204 LDSVSEGSDTYLTS---TG--DTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  276 (290)
Q Consensus       204 ~i~~~~~~~~v~~~---~g--~~~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~  276 (290)
                      +++.+++.+.+.+.   +|  +++++|.|++|+|..|+.++  ++..++  +++++|++.||+++|+ +.|+|||+|||+
T Consensus       243 ~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl--~~~~~G~i~vd~~~~t-~~~~Iya~GD~~  319 (470)
T 1dxl_A          243 GVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGV--ETDKLGRILVNERFST-NVSGVYAIGDVI  319 (470)
T ss_dssp             EEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTC--CBCSSSCBCCCTTCBC-SSTTEEECSTTS
T ss_pred             EEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCC--ccCCCCCEeECcCCcc-CCCCEEEEeccC
Confidence            99876666655543   44  58999999999999999888  455444  5677899999999997 799999999999


Q ss_pred             Ccccc
Q 022896          277 DIRVS  281 (290)
Q Consensus       277 ~~~~~  281 (290)
                      +.+..
T Consensus       320 ~~~~~  324 (470)
T 1dxl_A          320 PGPML  324 (470)
T ss_dssp             SSCCC
T ss_pred             CCCcc
Confidence            86543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=3e-35  Score=255.19  Aligned_cols=262  Identities=18%  Similarity=0.274  Sum_probs=193.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCcc--cccccccccccc-c--cceEEe-ee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSF--GKRSVINHTDYL-V--NGRIVA-SP   83 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~--~~~~~~-~~   83 (290)
                      ++||+|||||++|+++|.+|++   |.+|+|||+++..++....+........  .........+.+ +  +++++. ..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~  115 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE  115 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence            4799999999999999999975   8999999999876544332222211111  111111111222 1  455554 67


Q ss_pred             eeeeecc--eEEec---Cce--EEeccEEEEccCCCCCCCC---chH------HHHHHHHHHHHHHh--cCCeEEEEcCc
Q 022896           84 AINITEN--EVLTA---EGR--RVVYDYLVIATGHKDPVPK---TRT------ERLNQYQAENQKIK--SARSILIVGGG  145 (290)
Q Consensus        84 v~~~~~~--~v~~~---~~~--~~~~~~vi~a~G~~~~~p~---~~~------~~~~~~~~~~~~~~--~~~~v~iiG~g  145 (290)
                      +..++..  .+.+.   ++.  ++.||++|+|||++|..|+   ...      ....+...+.+.+.  .+++++|+|+|
T Consensus       116 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  195 (480)
T 3cgb_A          116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGG  195 (480)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCH
T ss_pred             EEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCC
Confidence            7777754  45443   355  7999999999999866554   211      11233333333333  68999999999


Q ss_pred             hhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEecc
Q 022896          146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINAD  225 (290)
Q Consensus       146 ~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d  225 (290)
                      .+|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.|++++.++.|++++.+++...+.+. +.++++|
T Consensus       196 ~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D  272 (480)
T 3cgb_A          196 AIGLEMAETFVE--LGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKAD  272 (480)
T ss_dssp             HHHHHHHHHHHH--TTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECS
T ss_pred             HHHHHHHHHHHh--cCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcC
Confidence            999999999987  4889999999998888888999999999999999999999999988765322334444 4589999


Q ss_pred             EEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          226 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       226 ~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .||+|+|.+|+.++++..++  +++++|++.||+++|+ +.|+|||+|||+..+.
T Consensus       273 ~vi~a~G~~p~~~~l~~~g~--~~~~~G~I~Vd~~~~t-s~p~IyA~GD~~~~~~  324 (480)
T 3cgb_A          273 LVLVSVGVKPNTDFLEGTNI--RTNHKGAIEVNAYMQT-NVQDVYAAGDCATHYH  324 (480)
T ss_dssp             EEEECSCEEESCGGGTTSCC--CBCTTSCBCCCTTSBC-SSTTEEECGGGBCEEB
T ss_pred             EEEECcCCCcChHHHHhCCc--ccCCCCCEEECCCccC-CCCCEEEeeeEEEecC
Confidence            99999999999888887665  5578899999999998 7999999999997654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=4e-37  Score=265.53  Aligned_cols=265  Identities=20%  Similarity=0.264  Sum_probs=196.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh---------------------cC---Cccccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM---------------------VE---PSFGKRSV   67 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~---------------------~~---~~~~~~~~   67 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+++.+|+.|......                     +.   .......+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPAL   80 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHH
Confidence            3799999999999999999976 99999999998777654321100                     00   00000000


Q ss_pred             cc------------ccccc--ccceEEeeeeeeeecceEEec-CceEEeccEEEEccCCCCCCCC---chHHHHHHHHHH
Q 022896           68 IN------------HTDYL--VNGRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDPVPK---TRTERLNQYQAE  129 (290)
Q Consensus        68 ~~------------~~~~~--~~~~~~~~~v~~~~~~~v~~~-~~~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~~~~  129 (290)
                      ..            +..++  .+++++.+.+..+++..+... ++.++.||++|+|||++|..|+   .....+.+....
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~~  160 (455)
T 2yqu_A           81 MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEA  160 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCSSSEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCcCcEechHHh
Confidence            00            01111  135677777766766654443 5678999999999999876554   111112122222


Q ss_pred             HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCC
Q 022896          130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  209 (290)
Q Consensus       130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~  209 (290)
                      ......+++++|+|+|.+|+++|..+..  .+.+|+++++.+.+++.+++.+.+.+.+.+++.|++++.++.|++++.++
T Consensus       161 ~~~~~~~~~vvIiGgG~~g~e~A~~l~~--~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~  238 (455)
T 2yqu_A          161 LSFPEVPKRLIVVGGGVIGLELGVVWHR--LGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA  238 (455)
T ss_dssp             TCCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEET
T ss_pred             hccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC
Confidence            2222346899999999999999999986  48899999999988888888999999999999999999999999998766


Q ss_pred             CceeEEcCCCcEEeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          210 GSDTYLTSTGDTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       210 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +.+.+.+.+|+++++|.||+|+|.+|+.++  ++..++  .++++|++.||+++++ +.|+|||+|||+..+...
T Consensus       239 ~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~--~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~~~~~  310 (455)
T 2yqu_A          239 KGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGL--STDERGRIPVDEHLRT-RVPHIYAIGDVVRGPMLA  310 (455)
T ss_dssp             TEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTC--CCCTTSCCCCCTTSBC-SSTTEEECGGGSSSCCCH
T ss_pred             CEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCC--ccCCCCcEeECCCccc-CCCCEEEEecCCCCccCH
Confidence            667777778889999999999999999877  445444  5567899999999997 799999999999876433

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.3e-37  Score=263.91  Aligned_cols=262  Identities=21%  Similarity=0.261  Sum_probs=192.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC---Ccccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE---PSFGKRS   66 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~---~~~~~~~   66 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||++ .+++.|.....                      .+.   .......
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   81 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK   81 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence            4899999999999999999976 9999999998 55544321100                      000   0000000


Q ss_pred             ccc------------ccccc--ccceEEeeeeeeeecce--EEecCc-eEEeccEEEEccCCCCCCCC---chHHHHHHH
Q 022896           67 VIN------------HTDYL--VNGRIVASPAINITENE--VLTAEG-RRVVYDYLVIATGHKDPVPK---TRTERLNQY  126 (290)
Q Consensus        67 ~~~------------~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~-~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~  126 (290)
                      +..            +.+++  .+++++.+.+..++++.  +.+.++ .++.||++|+|||++|..|+   .... +.+.
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~-v~~~  160 (455)
T 1ebd_A           82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNR-ILDS  160 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSS-EECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccce-EecH
Confidence            000            01111  14567777766677664  444556 67999999999999876554   2111 2222


Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.|++++
T Consensus       161 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  238 (455)
T 1ebd_A          161 TGALNLGEVPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAE  238 (455)
T ss_dssp             HHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             HHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            2222222357999999999999999999987  48999999999988888889999999999999999999999999888


Q ss_pred             cCCCceeEEcC---CCcEEeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          207 VSEGSDTYLTS---TGDTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       207 ~~~~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      .+++.+.+.+.   +++++++|.|++|+|.+|+.++  ++..++  +++++|++.||+++|+ +.|+|||+|||++.+..
T Consensus       239 ~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~--~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~~  315 (455)
T 1ebd_A          239 EREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGI--KMTNRGLIEVDQQCRT-SVPNIFAIGDIVPGPAL  315 (455)
T ss_dssp             EETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTC--CBCTTSCBCCCTTCBC-SSTTEEECGGGSSSCCC
T ss_pred             EeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCC--ccCCCCCEeeCCCccc-CCCCEEEEeccCCCccc
Confidence            76655555543   4568999999999999999887  445444  5678899999999997 79999999999986543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=8.3e-35  Score=250.51  Aligned_cols=260  Identities=21%  Similarity=0.307  Sum_probs=191.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCcc--ccccccccccccc--cceE-Eeeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSF--GKRSVINHTDYLV--NGRI-VASPAI   85 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~-~~~~v~   85 (290)
                      +||+|||||++|+++|.+|++   |++|+|||+++.+++.............  ..+......+++.  ++++ ....+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            589999999999999999964   8999999999876644332222111111  1111111122221  3455 456777


Q ss_pred             eeecc--eEEecC---ce--EEeccEEEEccCCCCCCCC---chH------HHHHHHHHHHHHHh--cCCeEEEEcCchh
Q 022896           86 NITEN--EVLTAE---GR--RVVYDYLVIATGHKDPVPK---TRT------ERLNQYQAENQKIK--SARSILIVGGGPT  147 (290)
Q Consensus        86 ~~~~~--~v~~~~---~~--~~~~~~vi~a~G~~~~~p~---~~~------~~~~~~~~~~~~~~--~~~~v~iiG~g~~  147 (290)
                      .++..  .+.+.+   +.  ++.||++|+|||++|..|+   ...      ..+.+...+.+.+.  .+++++|+|+|..
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~  160 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI  160 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHH
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHH
Confidence            77654  455533   43  4899999999999865543   211      12233333334444  6899999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccE
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC  226 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~  226 (290)
                      |+++|..+..  .+.+|+++++.+.+++ .+++++.+.+.+.+++.|++++.++.|++++.++....+.+ +++++++|.
T Consensus       161 g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~  237 (447)
T 1nhp_A          161 GIEAAEAFAK--AGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADL  237 (447)
T ss_dssp             HHHHHHHHHH--TTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSE
T ss_pred             HHHHHHHHHH--CCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCE
Confidence            9999999986  4889999999988877 57889999999999999999999999998876532234555 556899999


Q ss_pred             EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          227 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       227 vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      |++|+|.+|+.++++.. +  +++++|++.||+++|+ +.|+|||+|||+..+.
T Consensus       238 vi~a~G~~p~~~~~~~~-~--~~~~~G~i~Vd~~~~t-~~~~Iya~GD~~~~~~  287 (447)
T 1nhp_A          238 VVVAVGVRPNTAWLKGT-L--ELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKY  287 (447)
T ss_dssp             EEECSCEEESCGGGTTT-S--CBCTTSCBCCCTTCBC-SSTTEEECGGGSCEEE
T ss_pred             EEECcCCCCChHHHHhh-h--hhcCCCcEEECccccC-CCCCEEEeeeEEEeec
Confidence            99999999998888765 4  5678899999999998 7999999999998654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=3.8e-35  Score=260.75  Aligned_cols=264  Identities=21%  Similarity=0.332  Sum_probs=199.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--cccc-cccccccc--cceE-Ee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSV-INHTDYLV--NGRI-VA   81 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~~-~~   81 (290)
                      .+++||+|||||++||++|++|++   +++|+|||+++.+++....+.........  ...+ .....+..  ++.+ ..
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~  113 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVL  113 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEEC
Confidence            456899999999999999999964   79999999999877554433332222211  1111 11122211  3344 45


Q ss_pred             eeeeeeecc--eEEec---Cce--EEeccEEEEccCCCCCCC---Cc-h------HHHHHHHHHHHHHH--hcCCeEEEE
Q 022896           82 SPAINITEN--EVLTA---EGR--RVVYDYLVIATGHKDPVP---KT-R------TERLNQYQAENQKI--KSARSILIV  142 (290)
Q Consensus        82 ~~v~~~~~~--~v~~~---~~~--~~~~~~vi~a~G~~~~~p---~~-~------~~~~~~~~~~~~~~--~~~~~v~ii  142 (290)
                      ..|+.++..  .+.+.   ++.  .+.||++|+|||++|..|   +. .      ...+.........+  ..+++++|+
T Consensus       114 ~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvVi  193 (588)
T 3ics_A          114 SEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVI  193 (588)
T ss_dssp             EEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             CEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEE
Confidence            778888765  34432   344  789999999999986544   32 1      12223333332222  468999999


Q ss_pred             cCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEE
Q 022896          143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI  222 (290)
Q Consensus       143 G~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~  222 (290)
                      |+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+++.++.|++++.+++  .+.+.+|+++
T Consensus       194 GgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v~~~~g~~i  269 (588)
T 3ics_A          194 GGGFIGVEMVENLRE--RGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA--VVRLKSGSVI  269 (588)
T ss_dssp             CCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT--EEEETTSCEE
T ss_pred             CCCHHHHHHHHHHHh--CCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC--EEEECCCCEE
Confidence            999999999999987  589999999999988889999999999999999999999999988876544  4666788899


Q ss_pred             eccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          223 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       223 ~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      ++|.||+|+|.+|+.++++..++  +++++|++.||+++|+ +.|+|||+|||+..++.
T Consensus       270 ~~D~Vi~a~G~~p~~~~l~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~  325 (588)
T 3ics_A          270 QTDMLILAIGVQPESSLAKGAGL--ALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDF  325 (588)
T ss_dssp             ECSEEEECSCEEECCHHHHHTTC--CBCGGGCBCCCTTSBC-SSTTEEECGGGBCEEBT
T ss_pred             EcCEEEEccCCCCChHHHHhcCc--eEcCCCCEEECCcccc-CCCCEEEeeeeeecccc
Confidence            99999999999999988887666  5678899999999998 79999999999975543

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=2.9e-35  Score=255.63  Aligned_cols=267  Identities=19%  Similarity=0.237  Sum_probs=197.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhh-hcCC-c--------------------c-cc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRA-MVEP-S--------------------F-GK   64 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~-~~~~-~--------------------~-~~   64 (290)
                      ..++|++|||||++|++||..|++   +.+|+|||+++.+++....+.. .... .                    + ..
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP   88 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccch
Confidence            346899999999999999999853   8999999999876543221111 0000 0                    0 00


Q ss_pred             ccccccccc----cccceEEee-eeeeeecc--eEEecCceEEeccEEEEccCCCCCCCCchH-------H------HHH
Q 022896           65 RSVINHTDY----LVNGRIVAS-PAINITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------E------RLN  124 (290)
Q Consensus        65 ~~~~~~~~~----~~~~~~~~~-~v~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~-------~------~~~  124 (290)
                      ..+.....+    ..+++++.+ .|..+++.  .+.+.++..+.||+||+|||++|..|+...       .      ...
T Consensus        89 ~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~  168 (493)
T 1m6i_A           89 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIG  168 (493)
T ss_dssp             GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred             HhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHH
Confidence            001100111    124566654 78888754  688888889999999999999987654211       0      122


Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC--CCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCce
Q 022896          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF--PEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       125 ~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~--~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      ++..+......+++++|||+|.+|+|+|..+..+.  .+.+|+++.+.+.++. .+++.+...+.+.+++.||+++.++.
T Consensus       169 d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~  248 (493)
T 1m6i_A          169 DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAI  248 (493)
T ss_dssp             HHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCC
T ss_pred             HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCE
Confidence            33334444567899999999999999999987531  3678999988765543 36678888999999999999999999


Q ss_pred             EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCC-CCcEEecCCccccCCCCeEEeccccCccc
Q 022896          202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~-~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      |++++.+++.+.+.+.+|+++++|.||+|+|..|+.++++..++.  +++ +|++.||+++|+  .|+|||+|||+..++
T Consensus       249 V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~--~~~~~ggi~Vd~~l~t--~~~IyA~GD~a~~~~  324 (493)
T 1m6i_A          249 VQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLE--IDSDFGGFRVNAELQA--RSNIWVAGDAACFYD  324 (493)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTCC--BCTTTCSEECCTTCEE--ETTEEECGGGEEEEE
T ss_pred             EEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCCc--cccCCCcEEECCCccc--CCCeeEeeeeEeccC
Confidence            998876656667888899999999999999999999998877764  454 588999999997  599999999998764


Q ss_pred             c
Q 022896          281 S  281 (290)
Q Consensus       281 ~  281 (290)
                      .
T Consensus       325 ~  325 (493)
T 1m6i_A          325 I  325 (493)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=8.3e-37  Score=266.25  Aligned_cols=263  Identities=19%  Similarity=0.209  Sum_probs=196.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-c---CCcEEEEcCCCCcccchhhhhh----------------------hcC--C---c
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASLRA----------------------MVE--P---S   61 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-~---g~~v~vie~~~~~~~~~~~~~~----------------------~~~--~---~   61 (290)
                      ++||+|||||++|+++|++|+ .   |++|+|||+++ +|+.+.....                      .+.  .   .
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK   80 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            589999999999999999995 4   89999999998 6554321100                      000  0   0


Q ss_pred             ccccccc------------cccccc--ccceEEeeeeeeeec------ce--EEecCce--EEeccEEEEccCCCCCCCC
Q 022896           62 FGKRSVI------------NHTDYL--VNGRIVASPAINITE------NE--VLTAEGR--RVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        62 ~~~~~~~------------~~~~~~--~~~~~~~~~v~~~~~------~~--v~~~~~~--~~~~~~vi~a~G~~~~~p~  117 (290)
                      .......            .+.+++  .+++++.+.+..+++      ..  +...++.  .+.||++++|||+.|..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~  160 (499)
T 1xdi_A           81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP  160 (499)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence            0000000            011111  145777777877777      43  4445565  7999999999999877654


Q ss_pred             ch---HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCc
Q 022896          118 TR---TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  194 (290)
Q Consensus       118 ~~---~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  194 (290)
                      ..   ...+.+..........+++++|+|+|.+++|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.|+
T Consensus       161 i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV  238 (499)
T 1xdi_A          161 SAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTE--LGVPVTVVASQDHVLPYEDADAALVLEESFAERGV  238 (499)
T ss_dssp             GGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHH--TTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence            11   11111111111222357899999999999999999986  58899999999999888999999999999999999


Q ss_pred             EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCCCeEEe
Q 022896          195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI  272 (290)
Q Consensus       195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~  272 (290)
                      +++.++.|++++.+++++.+.+.+|+++++|.||+|+|.+|+.++  ++..++  +++++|+|.||+++|+ +.|+|||+
T Consensus       239 ~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~  315 (499)
T 1xdi_A          239 RLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGI--QLGRGNYLTVDRVSRT-LATGIYAA  315 (499)
T ss_dssp             EEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTC--CCBTTTBCCCCSSSBC-SSTTEEEC
T ss_pred             EEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCc--eECCCCCEEECCCccc-CCCCEEEE
Confidence            999999999998776667787888889999999999999999888  555554  5677899999999998 79999999


Q ss_pred             ccccCcccc
Q 022896          273 GDITDIRVS  281 (290)
Q Consensus       273 Gd~~~~~~~  281 (290)
                      |||++.+..
T Consensus       316 GD~~~~~~l  324 (499)
T 1xdi_A          316 GDCTGLLPL  324 (499)
T ss_dssp             SGGGTSCSC
T ss_pred             eccCCCccc
Confidence            999987643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=2.8e-36  Score=260.89  Aligned_cols=262  Identities=18%  Similarity=0.214  Sum_probs=191.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh---------------h---hcC-Ccc------cccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR---------------A---MVE-PSF------GKRS   66 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~---------------~---~~~-~~~------~~~~   66 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||++ .+++.|....               .   ... ...      ....
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGI   81 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHH
Confidence            3899999999999999999976 9999999998 4443332110               0   000 000      0000


Q ss_pred             cc------------cccccc--ccceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCCCCC---chHHHHHH
Q 022896           67 VI------------NHTDYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK---TRTERLNQ  125 (290)
Q Consensus        67 ~~------------~~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~~p~---~~~~~~~~  125 (290)
                      ..            .+.+++  .+++++.+.+..++.+.  +.+.++  .++.||++|+|+|+.|..|+   .... +.+
T Consensus        82 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~-~~~  160 (464)
T 2a8x_A           82 AYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VVT  160 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTT-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCce-EEe
Confidence            00            001111  24566666655555553  445566  68999999999999865543   2211 222


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      ..........+++++|+|+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.++++
T Consensus       161 ~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i  238 (464)
T 2a8x_A          161 YEEQILSRELPKSIIIAGAGAIGMEFGYVLKN--YGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESI  238 (464)
T ss_dssp             HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEE
T ss_pred             cHHHhhccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEE
Confidence            22222222357999999999999999999987  4889999999999988889999999999999999999999999998


Q ss_pred             ccCCCceeEEcC-CC--cEEeccEEEEccCCCCCchh--hcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          206 SVSEGSDTYLTS-TG--DTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       206 ~~~~~~~~v~~~-~g--~~~~~d~vv~a~G~~~~~~~--l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +.+++.+.+.+. +|  +++++|.|++|+|..|+.++  ++..++  +++++|+|.||+++|+ +.|+|||+|||++.+.
T Consensus       239 ~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~  315 (464)
T 2a8x_A          239 ADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGV--ALTDRKAIGVDDYMRT-NVGHIYAIGDVNGLLQ  315 (464)
T ss_dssp             EECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTC--CBCTTSSBCCCTTSBC-SSTTEEECGGGGCSSC
T ss_pred             EEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCC--ccCCCCCEeECcCCcc-CCCCEEEeECcCCCcc
Confidence            876666666653 56  57999999999999999887  455554  5677899999999997 7999999999998654


Q ss_pred             c
Q 022896          281 S  281 (290)
Q Consensus       281 ~  281 (290)
                      .
T Consensus       316 ~  316 (464)
T 2a8x_A          316 L  316 (464)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=6.4e-35  Score=253.71  Aligned_cols=262  Identities=18%  Similarity=0.123  Sum_probs=189.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcC--------CCCcccchhhhhh----------------------hcCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDP--------KEYFEITWASLRA----------------------MVEP   60 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~--------~~~~~~~~~~~~~----------------------~~~~   60 (290)
                      .++||+|||||++|+++|.+|++ |++|+|||+        ...+|+.|.....                      .+..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            35999999999999999999976 999999997        3456665432210                      0000


Q ss_pred             ----cccccccccc------------cccc--ccceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCCCCC-
Q 022896           61 ----SFGKRSVINH------------TDYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK-  117 (290)
Q Consensus        61 ----~~~~~~~~~~------------~~~~--~~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~~p~-  117 (290)
                          .........+            ...+  .+++++.+.+..+++..  +...++  .++.||++|+|||++|..|+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~  164 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQ  164 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSS
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCC
Confidence                0000000000            0011  24577888888888775  444455  57999999999999976554 


Q ss_pred             chHH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcE
Q 022896          118 TRTE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  195 (290)
Q Consensus       118 ~~~~--~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  195 (290)
                      ..+.  ..............+++++|||+|.+|+|+|..+..  .+.+|+++++. .+++.+++++.+.+.+.+++.||+
T Consensus       165 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~gv~  241 (488)
T 3dgz_A          165 VKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTG--IGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHGTQ  241 (488)
T ss_dssp             CBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEcC-cccccCCHHHHHHHHHHHHHCCCE
Confidence            3221  111222222223357899999999999999999987  48999999986 467778899999999999999999


Q ss_pred             EEeCceEeecccCC-CceeEEcCC---Cc--EEeccEEEEccCCCCCchhhcccccccccC-CCCcEEecCCccccCCCC
Q 022896          196 VKLGERVNLDSVSE-GSDTYLTST---GD--TINADCHFLCTGKPVGSDWLKDTILKDSLD-THGMLMVDENLRVKGQKN  268 (290)
Q Consensus       196 ~~~~~~v~~i~~~~-~~~~v~~~~---g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~-~~g~~~v~~~~~~~~~~~  268 (290)
                      ++.++.+++++..+ +...+.+.+   |+  ++++|.|++|+|..|+.+++.....+++++ ++|++.||+++|+ +.|+
T Consensus       242 ~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t-~~~~  320 (488)
T 3dgz_A          242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEAT-SVPH  320 (488)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBC-SSTT
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCcc-CCCC
Confidence            99999998887643 445554433   54  478999999999999998854444445777 7899999999998 7999


Q ss_pred             eEEeccccC
Q 022896          269 IFAIGDITD  277 (290)
Q Consensus       269 vfa~Gd~~~  277 (290)
                      |||+|||+.
T Consensus       321 IyA~GD~~~  329 (488)
T 3dgz_A          321 IYAIGDVAE  329 (488)
T ss_dssp             EEECGGGBT
T ss_pred             EEEeEEecC
Confidence            999999984

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=3.6e-36  Score=261.23  Aligned_cols=264  Identities=17%  Similarity=0.225  Sum_probs=191.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh---------------hc--CC--ccc--------c
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA---------------MV--EP--SFG--------K   64 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~---------------~~--~~--~~~--------~   64 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+++.+++.|.....               ..  ..  ...        .
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            5899999999999999999976 9999999998877765432100               00  00  000        0


Q ss_pred             ccccc------------ccccc--ccceEEeeeeeeeecce--EEecCc--eE------EeccEEEEccCCCCC-CCCch
Q 022896           65 RSVIN------------HTDYL--VNGRIVASPAINITENE--VLTAEG--RR------VVYDYLVIATGHKDP-VPKTR  119 (290)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~--~~------~~~~~vi~a~G~~~~-~p~~~  119 (290)
                      ..+..            +..++  .+++++.+.....+...  +.+.++  .+      +.||++|+|||++|. +|+..
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g~~  164 (478)
T 1v59_A           85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE  164 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCCCC
Confidence            00000            00111  13556665555555443  444455  45      999999999999863 44421


Q ss_pred             HH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEE
Q 022896          120 TE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       120 ~~--~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  197 (290)
                      ..  .+.+..........+++++|||+|.+|+|+|..+..  .+.+|+++++.+.+++.+++++...+.+.+++.||+++
T Consensus       165 ~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~  242 (478)
T 1v59_A          165 IDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFK  242 (478)
T ss_dssp             CCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence            11  122222222222347999999999999999999987  48899999999999888899999999999999999999


Q ss_pred             eCceEeeccc--CCCceeEEcC-----CCcEEeccEEEEccCCCCCch--hhcccccccccCCCCcEEecCCccccCCCC
Q 022896          198 LGERVNLDSV--SEGSDTYLTS-----TGDTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDENLRVKGQKN  268 (290)
Q Consensus       198 ~~~~v~~i~~--~~~~~~v~~~-----~g~~~~~d~vv~a~G~~~~~~--~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~  268 (290)
                      .++.|++++.  +++...+.+.     +++++++|.|++|+|.+|+.+  +++..++  +++++|+|.||+++|+ +.|+
T Consensus       243 ~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~~~~  319 (478)
T 1v59_A          243 LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGL--EVDKRGRLVIDDQFNS-KFPH  319 (478)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTC--CBCTTSCBCCCTTSBC-SSTT
T ss_pred             eCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCc--eeCCCCCEeECcCCcc-CCCC
Confidence            9999998876  4444555544     346899999999999999987  6666655  5678899999999997 7999


Q ss_pred             eEEeccccCcccc
Q 022896          269 IFAIGDITDIRVS  281 (290)
Q Consensus       269 vfa~Gd~~~~~~~  281 (290)
                      |||+|||+..+..
T Consensus       320 IyA~GD~~~~~~~  332 (478)
T 1v59_A          320 IKVVGDVTFGPML  332 (478)
T ss_dssp             EEECGGGSSSCCC
T ss_pred             EEEeeccCCCccc
Confidence            9999999987543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=6.3e-36  Score=257.93  Aligned_cols=259  Identities=17%  Similarity=0.203  Sum_probs=190.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh------------------h-----cCCc-----cc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA------------------M-----VEPS-----FG   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~------------------~-----~~~~-----~~   63 (290)
                      ++|++|||||++|+++|.+|++ |++|+|||+ +.+|+.|.....                  .     ....     ..
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLD   83 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccC
Confidence            5899999999999999999986 999999999 556655432100                  0     0000     00


Q ss_pred             cccccc------------ccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCC-chHH-HHHHHH
Q 022896           64 KRSVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK-TRTE-RLNQYQ  127 (290)
Q Consensus        64 ~~~~~~------------~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~-~~~~-~~~~~~  127 (290)
                      ...+..            ...++  .+++++.+.+..+++..+.+++ ..+.||++|+|||++|..|+ .... .+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~~~~v~~~~  162 (458)
T 1lvl_A           84 IGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG-QRIQCEHLLLATGSSSVELPMLPLGGPVISST  162 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT-EEEECSEEEECCCEEECCBTTBCCBTTEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCccCcEecHH
Confidence            000000            01111  2456777777677777777765 78999999999999976554 1111 111222


Q ss_pred             HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeeccc
Q 022896          128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  207 (290)
Q Consensus       128 ~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~  207 (290)
                      ........+++++|||+|.+|+|+|..+...  +.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.+++++.
T Consensus       163 ~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  240 (458)
T 1lvl_A          163 EALAPKALPQHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN  240 (458)
T ss_dssp             HHTCCSSCCSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET
T ss_pred             HHhhhhccCCeEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe
Confidence            2222223478999999999999999999874  88999999999998888999999999999999999999999998876


Q ss_pred             CCCceeEEcCCC--cEEeccEEEEccCCCCCchhh--cccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          208 SEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       208 ~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~l--~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                       ++ +.+...+|  +++++|.|++|+|.+|+.+++  +..++  .++++ ++.||+++|+ +.|+|||+|||+..+..
T Consensus       241 -~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~--~~~~~-~i~vd~~~~t-~~~~Iya~GD~~~~~~~  312 (458)
T 1lvl_A          241 -GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDL--KMNGA-AIAIDERCQT-SMHNVWAIGDVAGEPML  312 (458)
T ss_dssp             -TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCC--CEETT-EECCCTTCBC-SSTTEEECGGGGCSSCC
T ss_pred             -CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCC--cccCC-EEeECCCCcC-CCCCEEEeeccCCCccc
Confidence             33 55664456  589999999999999998764  45444  45566 8999999997 79999999999986543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=1.8e-35  Score=258.51  Aligned_cols=262  Identities=16%  Similarity=0.123  Sum_probs=186.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC--------Ccccchhhhhh----------------------hcCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLRA----------------------MVEP   60 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~~~~~~~~~~----------------------~~~~   60 (290)
                      .++||+||||||+|+++|.+|++ |++|+|||+++        .+|+.|.....                      .+..
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            36899999999999999999976 99999999964        45654432200                      0000


Q ss_pred             ----ccccccccccc------------ccc--ccceEEeeeeeeeecceE--EecCce--EEeccEEEEccCCCCCCCCc
Q 022896           61 ----SFGKRSVINHT------------DYL--VNGRIVASPAINITENEV--LTAEGR--RVVYDYLVIATGHKDPVPKT  118 (290)
Q Consensus        61 ----~~~~~~~~~~~------------~~~--~~~~~~~~~v~~~~~~~v--~~~~~~--~~~~~~vi~a~G~~~~~p~~  118 (290)
                          .........+.            ..+  .+++++.+.+..+++..+  ...++.  ++.||++|+|||++|..|+.
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~i  190 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGI  190 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECCCCC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCCC
Confidence                00000000000            011  245778888888888754  334443  79999999999999776653


Q ss_pred             hHH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEE
Q 022896          119 RTE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  196 (290)
Q Consensus       119 ~~~--~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  196 (290)
                      .+.  ..............+++++|||+|.+|+|+|..+..  .+.+|+++.+. .+++.+++++.+.+.+.+++.||++
T Consensus       191 ~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~v  267 (519)
T 3qfa_A          191 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKF  267 (519)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecc-cccccCCHHHHHHHHHHHHHCCCEE
Confidence            221  111122222222356889999999999999999997  48899999985 6778889999999999999999999


Q ss_pred             EeCceEeecccCC----CceeE--EcCCC-c--EEeccEEEEccCCCCCchhhcccccccccC-CCCcEEecCCccccCC
Q 022896          197 KLGERVNLDSVSE----GSDTY--LTSTG-D--TINADCHFLCTGKPVGSDWLKDTILKDSLD-THGMLMVDENLRVKGQ  266 (290)
Q Consensus       197 ~~~~~v~~i~~~~----~~~~v--~~~~g-~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~-~~g~~~v~~~~~~~~~  266 (290)
                      +.++.+++++..+    +.+.+  ...+| +  ++++|.|++|+|..|+.+++.....+++++ ++|++.||+++|+ +.
T Consensus       268 ~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~T-s~  346 (519)
T 3qfa_A          268 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT-NV  346 (519)
T ss_dssp             EESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBC-SS
T ss_pred             EeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCcc-CC
Confidence            9998877775432    23333  33455 2  568999999999999988753333444667 5799999999998 89


Q ss_pred             CCeEEeccccC
Q 022896          267 KNIFAIGDITD  277 (290)
Q Consensus       267 ~~vfa~Gd~~~  277 (290)
                      |+|||+|||+.
T Consensus       347 ~~IyA~GD~~~  357 (519)
T 3qfa_A          347 PYIYAIGDILE  357 (519)
T ss_dssp             TTEEECGGGBS
T ss_pred             CCEEEEEeccC
Confidence            99999999983

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=2.5e-35  Score=256.10  Aligned_cols=261  Identities=16%  Similarity=0.099  Sum_probs=188.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC---------Ccccchhhhhh----------------------hcC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE---------YFEITWASLRA----------------------MVE   59 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~---------~~~~~~~~~~~----------------------~~~   59 (290)
                      .++||+|||||++|+++|++|++ |++|+|||+.+         .+|+.|.....                      .+.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~   87 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN   87 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence            46999999999999999999986 99999999421         25555432110                      000


Q ss_pred             C----cccccccccc-c-----------ccc--ccceEEeeeeeeeecce--EEecCc-eEEeccEEEEccCCCCCCCCc
Q 022896           60 P----SFGKRSVINH-T-----------DYL--VNGRIVASPAINITENE--VLTAEG-RRVVYDYLVIATGHKDPVPKT  118 (290)
Q Consensus        60 ~----~~~~~~~~~~-~-----------~~~--~~~~~~~~~v~~~~~~~--v~~~~~-~~~~~~~vi~a~G~~~~~p~~  118 (290)
                      .    ......+..+ .           ..+  .+++++.+.+..+++..  +...++ .++.||++|+|||+.|..|+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~i  167 (483)
T 3dgh_A           88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI  167 (483)
T ss_dssp             CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCSS
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCCC
Confidence            0    0000000000 0           001  24577788888887774  444455 479999999999998776652


Q ss_pred             hHH--HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEE
Q 022896          119 RTE--RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  196 (290)
Q Consensus       119 ~~~--~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  196 (290)
                      .+.  ...+..........+++++|+|+|.+++|+|..+..  .+.+|+++.+. .+++.+++++.+.+.+.+++.||++
T Consensus       168 ~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~Gv~i  244 (483)
T 3dgh_A          168 PGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKG--LGYEPTVMVRS-IVLRGFDQQMAELVAASMEERGIPF  244 (483)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHH--cCCEEEEEeCC-CCCcccCHHHHHHHHHHHHhCCCEE
Confidence            221  111122222222357899999999999999999987  48999999984 6777888999999999999999999


Q ss_pred             EeCceEeecccCCC-ceeEEcCCCc-----EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeE
Q 022896          197 KLGERVNLDSVSEG-SDTYLTSTGD-----TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIF  270 (290)
Q Consensus       197 ~~~~~v~~i~~~~~-~~~v~~~~g~-----~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vf  270 (290)
                      +.++.+++++.+++ .+.+.+.+++     ++++|.|++|+|..|+.+++.....++++++ |++.||+++|+ +.|+||
T Consensus       245 ~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t-~~~~Iy  322 (483)
T 3dgh_A          245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEAT-NVANIY  322 (483)
T ss_dssp             EETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBC-SSTTEE
T ss_pred             EeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCcc-CCCCEE
Confidence            99999998887544 3556554443     7899999999999999988743334446677 99999999997 799999


Q ss_pred             EeccccC
Q 022896          271 AIGDITD  277 (290)
Q Consensus       271 a~Gd~~~  277 (290)
                      |+|||+.
T Consensus       323 A~GD~~~  329 (483)
T 3dgh_A          323 AVGDIIY  329 (483)
T ss_dssp             ECSTTBT
T ss_pred             EEEcccC
Confidence            9999984

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=3e-34  Score=245.56  Aligned_cols=267  Identities=23%  Similarity=0.220  Sum_probs=188.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      .++|+|||||++|+++|.+|++   +++|+|||+++++.+.+.............+...++.++++  +++++.+.|+.+
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~I   81 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESI   81 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEE
Confidence            4689999999999999999974   58999999999876654333322222222333444455443  578899999999


Q ss_pred             ecc--eEEecCceEEeccEEEEccCCCC--CCCCch--------HHHHHHHHHHHHHHhcCCeEEEEcCch------hHH
Q 022896           88 TEN--EVLTAEGRRVVYDYLVIATGHKD--PVPKTR--------TERLNQYQAENQKIKSARSILIVGGGP------TGV  149 (290)
Q Consensus        88 ~~~--~v~~~~~~~~~~~~vi~a~G~~~--~~p~~~--------~~~~~~~~~~~~~~~~~~~v~iiG~g~------~~~  149 (290)
                      +++  +|.+++|.++.||+||+|||+++  .+|+..        .............+...+.++|+|++.      .+.
T Consensus        82 d~~~~~V~~~~g~~i~YD~LViAtG~~~~~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~  161 (430)
T 3hyw_A           82 DPDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAY  161 (430)
T ss_dssp             ETTTTEEEETTCCEEECSEEEECCCCEEECCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHH
T ss_pred             ECCCCEEEECCCCEEECCEEEEeCCCCccCCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHH
Confidence            976  68899999999999999999983  345421        122222233333344556666666542      233


Q ss_pred             HHHHHH----hhhC--CCCeEEEEecCccccc---cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC-
Q 022896          150 ELAGEI----AVDF--PEKKVTLVHKGSRLLE---FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-  219 (290)
Q Consensus       150 ~~a~~l----~~~~--~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g-  219 (290)
                      |++..+    ..+.  ...++++++..+.+..   ...+...+.+.+.++++||+++.++.|++++  ++++.+...+| 
T Consensus       162 e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~--~~~~~~~~~~g~  239 (430)
T 3hyw_A          162 EFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIE--PDKVIYEDLNGN  239 (430)
T ss_dssp             HHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEEC--SSEEEEECTTSC
T ss_pred             HHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEe--CCceEEEeeCCC
Confidence            444333    3221  2457888877664432   3445677888899999999999999997765  45566666555 


Q ss_pred             -cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          220 -DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       220 -~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                       +++++|.+++++|.+|+ +++...+..+..+.+|++.+|+++|++++|||||+|||++.|+..
T Consensus       240 ~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~  302 (430)
T 3hyw_A          240 THEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIE  302 (430)
T ss_dssp             EEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSS
T ss_pred             ceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcc
Confidence             47999999999999985 677776665555567889999999977999999999999987643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=5.8e-35  Score=241.39  Aligned_cols=254  Identities=17%  Similarity=0.178  Sum_probs=183.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc-CCccc----cccccccccccc--cceEEeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV-EPSFG----KRSVINHTDYLV--NGRIVASPA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~--~~~~~~~~v   84 (290)
                      ++||+|||||++|+++|++|++ |++|+|||++  .++.|....... .+.+.    .+....+.++..  ++++....|
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v   92 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIV   92 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESCE
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence            5899999999999999999976 9999999998  555544311100 01111    111111112111  345555788


Q ss_pred             eeeecc----eEEecCceEEeccEEEEccCCCCCCCC---chH---HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896           85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPK---TRT---ERLNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (290)
Q Consensus        85 ~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~  154 (290)
                      ..++..    .+.+.++..+.||++|+|+|..|..|.   ...   ..++...........+++++|+|+|.+++++|..
T Consensus        93 ~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~  172 (323)
T 3f8d_A           93 EKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEI  172 (323)
T ss_dssp             EEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHH
T ss_pred             EEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHH
Confidence            888765    467777789999999999999865443   211   1221112222344578999999999999999999


Q ss_pred             HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHH-hCCcEEEeCceEeecccCCCceeEEcCC---Cc--EEeccEEE
Q 022896          155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHF  228 (290)
Q Consensus       155 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~~~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv  228 (290)
                      +...  +.+|+++.+.+.+..  .+    .+.+.+. +.||+++.++.++++..+++...+.+.+   |+  ++++|.++
T Consensus       173 l~~~--g~~v~~~~~~~~~~~--~~----~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv  244 (323)
T 3f8d_A          173 LSSY--STKVYLIHRRDTFKA--QP----IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVF  244 (323)
T ss_dssp             HHHH--SSEEEEECSSSSCCS--CH----HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             HHHh--CCeEEEEEeCCCCCc--CH----HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEE
Confidence            9874  889999999887654  22    2333444 4599999999999888765444455443   65  79999999


Q ss_pred             EccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          229 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       229 ~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +|+|..|+.++++..++  +++++|++.+|+++++ +.|+|||+|||++.+
T Consensus       245 ~a~G~~p~~~~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  292 (323)
T 3f8d_A          245 IEIGFDPPTDFAKSNGI--ETDTNGYIKVDEWMRT-SVPGVFAAGDCTSAW  292 (323)
T ss_dssp             ECCCEECCHHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBSTT
T ss_pred             EEECCCCChhHHhhcCe--eecCCCcEecCCCcee-cCCCEEEcceecCCC
Confidence            99999999899888766  5678999999999998 799999999999863

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=9.9e-36  Score=244.93  Aligned_cols=258  Identities=17%  Similarity=0.199  Sum_probs=169.2

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Ccccc----cccccccccc-c-cceEE-
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGK----RSVINHTDYL-V-NGRIV-   80 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~-~-~~~~~-   80 (290)
                      ...+|||+||||||||++||.+|++ |++|+|||++.. ++.+.......+ +.+..    +......... + ...+. 
T Consensus         3 te~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~-gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
T 4gcm_A            3 TEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIP-GGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQY   81 (312)
T ss_dssp             -CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-TGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccc
Confidence            3457999999999999999999986 999999999754 332211111000 11100    0000001110 0 11121 


Q ss_pred             eeeeeeeecc--eEEecCceEEeccEEEEccCCCCCC---CCchH---HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896           81 ASPAINITEN--EVLTAEGRRVVYDYLVIATGHKDPV---PKTRT---ERLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (290)
Q Consensus        81 ~~~v~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~---p~~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a  152 (290)
                      ...+......  .....++.++.||++|+|||++|..   |+...   ..+............+++++|||+|++|+|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A  161 (312)
T 4gcm_A           82 GDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEG  161 (312)
T ss_dssp             CCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHH
T ss_pred             eeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHH
Confidence            1122222222  4556677899999999999998554   44211   11111222223345689999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce----eEEcC--CCcEEeccE
Q 022896          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD----TYLTS--TGDTINADC  226 (290)
Q Consensus       153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~----~v~~~--~g~~~~~d~  226 (290)
                      ..+..  .+.+|+++++.+.+...     .......++..++.......+......+...    .....  ++..+++|.
T Consensus       162 ~~l~~--~g~~Vtlv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  234 (312)
T 4gcm_A          162 TFLTK--FADKVTIVHRRDELRAQ-----RILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADG  234 (312)
T ss_dssp             HHHTT--TCSEEEEECSSSSCCSC-----HHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSE
T ss_pred             HHHHh--cCCEEEEEecccccCcc-----hhHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeee
Confidence            99985  69999999998876532     1223445677788888777776555444331    11222  334789999


Q ss_pred             EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          227 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       227 vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +++++|..|+..++...++   .+++|+|.||+++|| ++|+|||+|||++.+
T Consensus       235 v~~~~g~~~~~~~~~~~g~---~~~~G~I~vd~~~~T-s~pgIyA~GDv~~~~  283 (312)
T 4gcm_A          235 VFIYIGMKPLTAPFKDLGI---TNDVGYIVTKDDMTT-SVPGIFAAGDVRDKG  283 (312)
T ss_dssp             EEECSCEEESCGGGGGGTC---BCTTSCBCCCTTSBC-SSTTEEECSTTBSCS
T ss_pred             EEeecCCCcCchhHHhcce---ecCCCeEeeCCCCcc-CCCCEEEEeecCCCc
Confidence            9999999999988888765   367899999999998 799999999999743

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=2e-35  Score=242.18  Aligned_cols=253  Identities=15%  Similarity=0.177  Sum_probs=173.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCC-ccc-ccccc---ccccccccceEEeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEP-SFG-KRSVI---NHTDYLVNGRIVASPAIN   86 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~-~~~-~~~~~---~~~~~~~~~~~~~~~v~~   86 (290)
                      +|||+|||||||||+||++|++ |++|+|||++...+............ ... .+...   .....+....+....+..
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVM   85 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEE
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEE
Confidence            5999999999999999999976 99999999986544221111111100 000 01000   001112234555555555


Q ss_pred             eecc-----eEEecCceEEeccEEEEccCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchh-HHHHHHH
Q 022896           87 ITEN-----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPT-GVELAGE  154 (290)
Q Consensus        87 ~~~~-----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~iiG~g~~-~~~~a~~  154 (290)
                      +...     ++.+.++.++.||++|+|||++|..|+....      .+............+++++|||+|.. +.++|..
T Consensus        86 ~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~  165 (304)
T 4fk1_A           86 ITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKL  165 (304)
T ss_dssp             EEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHH
T ss_pred             eeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHH
Confidence            5432     5778888999999999999998665542211      11112222233446778888888765 5677777


Q ss_pred             HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCC
Q 022896          155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       155 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      +..  .+.+|+++.+.+.+        ...+.+.++++|++++.+. ++.+..+++. ..+.+.+|+++++|.+++++|.
T Consensus       166 ~~~--~~~~v~i~~~~~~~--------~~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~  234 (304)
T 4fk1_A          166 VYN--WSTDLVIATNGNEL--------SQTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTF  234 (304)
T ss_dssp             HTT--TCSCEEEECSSCCC--------CHHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEECCEE
T ss_pred             HHh--CCceEEEEeccccc--------hhhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceeeeecc
Confidence            764  58889988876543        3456677889999998765 5556555444 5678899999999999998887


Q ss_pred             CCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          234 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       234 ~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      .|+..++...++  +++++|+|.||+++|| +.|||||+|||++.+
T Consensus       235 ~~~~~~~~~~g~--~~~~~G~I~vd~~~~T-s~p~IyA~GDv~~~~  277 (304)
T 4fk1_A          235 FRPNQFIEQLGC--ELQSNGTFVIDDFGRT-SEKNIYLAGETTTQG  277 (304)
T ss_dssp             ECSSCHHHHTTC--CCCTTSSSCSSTTCBC-SSTTEEECSHHHHTS
T ss_pred             ccCChhhhhcCe--EECCCCCEEECcCCcc-CCCCEEEEeccCCCc
Confidence            766677877665  6789999999999998 799999999999754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=9.6e-35  Score=239.25  Aligned_cols=256  Identities=18%  Similarity=0.214  Sum_probs=170.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh---hcC--Ccccc-----ccccccccccc--cceE
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA---MVE--PSFGK-----RSVINHTDYLV--NGRI   79 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~---~~~--~~~~~-----~~~~~~~~~~~--~~~~   79 (290)
                      .|||+||||||||++||.+|++ |++|+|||++...+..+...-.   .+.  +.++.     +....+.+...  ...+
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~   83 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTI   83 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEE
Confidence            6999999999999999999976 9999999998753322211100   000  01110     01111111111  2234


Q ss_pred             Eeeeeeeeecc----eEEecCceEEeccEEEEccCCCCCCC---CchHHH---HHHHH--HHHHHHhcCCeEEEEcCchh
Q 022896           80 VASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVP---KTRTER---LNQYQ--AENQKIKSARSILIVGGGPT  147 (290)
Q Consensus        80 ~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p---~~~~~~---~~~~~--~~~~~~~~~~~v~iiG~g~~  147 (290)
                      ....+......    .+.+.++.++.||++|+|||++|..|   +.....   .....  ........+++++|+|+|++
T Consensus        84 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~i  163 (314)
T 4a5l_A           84 ITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDA  163 (314)
T ss_dssp             ECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHH
T ss_pred             EEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChH
Confidence            44444444332    46677888999999999999986544   422110   01111  11122346799999999999


Q ss_pred             HHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc---eeEE---cCCCcE
Q 022896          148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYL---TSTGDT  221 (290)
Q Consensus       148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~---~~~g~~  221 (290)
                      |+|+|..+..  .+.+|+++++.+....     ......+.....+++.+....+.++...+..   ..+.   ..++++
T Consensus       164 g~e~A~~l~~--~G~~Vt~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  236 (314)
T 4a5l_A          164 AMEEALHLTK--YGSKVIILHRRDAFRA-----SKTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKV  236 (314)
T ss_dssp             HHHHHHHHTT--TSSEEEEECSSSSCCS-----CHHHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHHH--hCCeeeeecccccccc-----cchhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeeccccccee
Confidence            9999999986  5899999998765421     1223344456678888888888777654443   2332   234568


Q ss_pred             EeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          222 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       222 ~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +++|.+++++|..|+.+++...   +.++++|.+ +|+++|| +.|+|||+|||++.+.
T Consensus       237 i~~d~vi~a~G~~pn~~~l~~~---~~~~~~G~i-v~~~~~T-s~pgIyA~GDv~~~~~  290 (314)
T 4a5l_A          237 VPVAGLFYAIGHSPNSKFLGGQ---VKTADDGYI-LTEGPKT-SVDGVFACGDVCDRVY  290 (314)
T ss_dssp             EECSEEEECSCEEESCGGGTTS---SCBCTTSCB-CCBTTBC-SSTTEEECSTTTCSSC
T ss_pred             eccccceEecccccChhHhccc---ceEcCCeeE-eCCCCcc-CCCCEEEEEeccCCcc
Confidence            9999999999999999998653   356788876 8889998 7999999999998763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=6.6e-35  Score=241.39  Aligned_cols=254  Identities=17%  Similarity=0.214  Sum_probs=178.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc-CCccc-----cccccccccccc--cceEEeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV-EPSFG-----KRSVINHTDYLV--NGRIVASP   83 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~--~~~~~~~~   83 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||++ .+++.+....... .+.+.     ......+.+...  ++++..+.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~   86 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMDE   86 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEECC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEeee
Confidence            5899999999999999999976 9999999998 4555443221100 01110     011111111111  34566677


Q ss_pred             eeeeecc-------eEEecCceEEeccEEEEccCCCCCCCC---chH---HHHHHHHHHHHHHhcCCeEEEEcCchhHHH
Q 022896           84 AINITEN-------EVLTAEGRRVVYDYLVIATGHKDPVPK---TRT---ERLNQYQAENQKIKSARSILIVGGGPTGVE  150 (290)
Q Consensus        84 v~~~~~~-------~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~  150 (290)
                      +..++..       .+.+.++..+.||++|+|+|..|..|+   ...   ..++.+.........+++++|+|+|.+++|
T Consensus        87 v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e  166 (325)
T 2q7v_A           87 VQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVE  166 (325)
T ss_dssp             EEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHH
T ss_pred             EEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHH
Confidence            7777643       356667788999999999999865543   211   111111122233456799999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHH-hCCcEEEeCceEeecccCCCceeEEcC---CCc--EEec
Q 022896          151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TINA  224 (290)
Q Consensus       151 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~~~~~~~v~~i~~~~~~~~v~~~---~g~--~~~~  224 (290)
                      +|..|..  .+.+|+++++.+.+.  ..    ..+.+.+. +.||+++.++.++++..++....+.+.   +|+  ++++
T Consensus       167 ~A~~l~~--~g~~Vtlv~~~~~~~--~~----~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~  238 (325)
T 2q7v_A          167 EGMFLTK--FADEVTVIHRRDTLR--AN----KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELAT  238 (325)
T ss_dssp             HHHHHTT--TCSEEEEECSSSSCC--SC----HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEEC
T ss_pred             HHHHHHh--cCCEEEEEeCCCcCC--cc----hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEc
Confidence            9999986  488999999987653  12    23334444 469999999999988765332244433   565  7899


Q ss_pred             cEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          225 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       225 d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      |.|++|+|+.|+.+++... +  .++++|++.||+++++ +.|+|||+|||++.+
T Consensus       239 D~vi~a~G~~p~~~~l~~~-~--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  289 (325)
T 2q7v_A          239 DGVFIFIGHVPNTAFVKDT-V--SLRDDGYVDVRDEIYT-NIPMLFAAGDVSDYI  289 (325)
T ss_dssp             SEEEECSCEEESCGGGTTT-S--CBCTTSCBCCBTTTBC-SSTTEEECSTTTCSS
T ss_pred             CEEEEccCCCCChHHHhhh-c--ccCCCccEecCCCCcc-CCCCEEEeecccCcc
Confidence            9999999999999888765 3  5678899999999997 799999999999863

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=2.5e-34  Score=236.79  Aligned_cols=257  Identities=15%  Similarity=0.150  Sum_probs=180.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEE-EcCCCCcccchhhhhhhc-CCccc-----cccccccccccc--cceEEe
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTL-IDPKEYFEITWASLRAMV-EPSFG-----KRSVINHTDYLV--NGRIVA   81 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~v-ie~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~--~~~~~~   81 (290)
                      .++||+|||||++||++|++|++ |++|+| +|+ +.+++.|....... .+.+.     .+....+.++..  ++.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   81 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEM   81 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEE
Confidence            36899999999999999999986 999999 999 45565543322110 01111     111111122221  345666


Q ss_pred             eeeeee-ec--ceE---EecCceEEeccEEEEccCCCCCCCC---chH---HHHHHHHHHHHHHhcCCeEEEEcCchhHH
Q 022896           82 SPAINI-TE--NEV---LTAEGRRVVYDYLVIATGHKDPVPK---TRT---ERLNQYQAENQKIKSARSILIVGGGPTGV  149 (290)
Q Consensus        82 ~~v~~~-~~--~~v---~~~~~~~~~~~~vi~a~G~~~~~p~---~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~~~~  149 (290)
                      +.+..+ +.  ..+   ...++ ++.||++|+|+|..|..|.   ...   ..++...........+++++|+|+|.+++
T Consensus        82 ~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~  160 (315)
T 3r9u_A           82 VGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTAL  160 (315)
T ss_dssp             CCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHH
T ss_pred             EEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHH
Confidence            677777 33  222   22334 8999999999999865543   211   22222222333445789999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc---eeEEcCCCc--EEec
Q 022896          150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTGD--TINA  224 (290)
Q Consensus       150 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~  224 (290)
                      ++|..+..  .+.+|+++.+.+.+.  ..   ...+.+.+++.||++++++.++++..+++.   +.+...+|+  ++++
T Consensus       161 e~a~~l~~--~g~~v~~~~~~~~~~--~~---~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~  233 (315)
T 3r9u_A          161 EEALYLAN--ICSKIYLIHRRDEFR--AA---PSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNV  233 (315)
T ss_dssp             HHHHHHHT--TSSEEEEECSSSSCB--SC---HHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECC
T ss_pred             HHHHHHHh--hCCEEEEEEeCCCCC--CC---HHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeec
Confidence            99999986  488999999988762  22   233445557889999999999998776543   334444775  7999


Q ss_pred             cEEEEccCCCCCchhhcc-cccc-cccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896          225 DCHFLCTGKPVGSDWLKD-TILK-DSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       225 d~vv~a~G~~~~~~~l~~-~~~~-~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                      |.+|+|+|..|+..++.. ..++ ++++++|++.||+++|+ ++|+|||+|||++.
T Consensus       234 D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t-~~~~v~a~GD~~~~  288 (315)
T 3r9u_A          234 PGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT-SVAGLFAAGDLRKD  288 (315)
T ss_dssp             SCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECGGGBTT
T ss_pred             CeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCccc-CCCCEEEeecccCC
Confidence            999999999999988876 2232 46788899999999998 89999999999864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=1.1e-34  Score=246.80  Aligned_cols=266  Identities=20%  Similarity=0.220  Sum_probs=188.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc-ccceEEeeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL-VNGRIVASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~   88 (290)
                      .++|+|||||++|+++|.+|++   +.+|+|||+++.+.+.+.................++..+. .+++++.+.|+.++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id   81 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID   81 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence            4789999999999999999964   5799999999876543322222111111122222233322 25788999999999


Q ss_pred             cc--eEEecCceEEeccEEEEccCCCCC---CCCch-------------HHHHHHHHHHHHHHhcCCeEEEEcCc-----
Q 022896           89 EN--EVLTAEGRRVVYDYLVIATGHKDP---VPKTR-------------TERLNQYQAENQKIKSARSILIVGGG-----  145 (290)
Q Consensus        89 ~~--~v~~~~~~~~~~~~vi~a~G~~~~---~p~~~-------------~~~~~~~~~~~~~~~~~~~v~iiG~g-----  145 (290)
                      ++  .+.+.++.++.||+|++|+|+.+.   +|+..             ................+..+++.++.     
T Consensus        82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~  161 (401)
T 3vrd_B           82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRC  161 (401)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBC
T ss_pred             ccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEe
Confidence            86  688889999999999999999854   33311             11222222233333344555554432     


Q ss_pred             -h----hHHHHHHHHhhhCCCCeEEEEecCcccc--ccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC
Q 022896          146 -P----TGVELAGEIAVDFPEKKVTLVHKGSRLL--EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST  218 (290)
Q Consensus       146 -~----~~~~~a~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~  218 (290)
                       .    .+.+++..+.......+|++++..+.+.  ..+++.+.+.+.+.+++.|++++.++.++.++.+.+...+.+.+
T Consensus       162 ~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~  241 (401)
T 3vrd_B          162 PPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSF  241 (401)
T ss_dssp             TTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETT
T ss_pred             ehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCC
Confidence             1    3455666666656678999999887653  22444555555666788999999999998888888888899999


Q ss_pred             CcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCc-cccc
Q 022896          219 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDI-RVSA  282 (290)
Q Consensus       219 g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~-~~~~  282 (290)
                      |+++++|.+++++|.+|+ +++...++   .+++|++.||++ +|++++|||||+|||++. +.++
T Consensus       242 g~~i~~D~vi~~~g~~~~-~~~~~~gl---~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk  303 (401)
T 3vrd_B          242 GETFKAAVINLIPPQRAG-KIAQSASL---TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPK  303 (401)
T ss_dssp             SCEEECSEEEECCCEEEC-HHHHHTTC---CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCB
T ss_pred             CcEEEeeEEEEecCcCCc-hhHhhccc---cccCCCEEECCCcceecCCCCEEEecccccCCCCCc
Confidence            999999999999999885 78888776   378899999987 788899999999999874 3344

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=2.9e-34  Score=236.08  Aligned_cols=256  Identities=18%  Similarity=0.197  Sum_probs=178.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCCcccchhhhhhhc-CCccc-----cccccccccccc--cceEEee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEYFEITWASLRAMV-EPSFG-----KRSVINHTDYLV--NGRIVAS   82 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~--~~~~~~~   82 (290)
                      ++||+|||||++|+++|.+|++ |+ +|+|||++. .++.+....... .+.++     ......+.+.+.  ++++...
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~   79 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMT   79 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECS
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            3799999999999999999976 99 999999964 444433211100 01110     011111111111  3455556


Q ss_pred             eeeeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896           83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (290)
Q Consensus        83 ~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a  152 (290)
                      .+..++..    .+.+.++..+.||++|+|+|..|..|+....      .++.+.........+++++|+|+|.+++|+|
T Consensus        80 ~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A  159 (311)
T 2q0l_A           80 AVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEA  159 (311)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHH
T ss_pred             EEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHH
Confidence            77777643    4656777889999999999998666542211      1111122223345689999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHH-hCCcEEEeCceEeecccCCCce-eEEcC---CCc--EEecc
Q 022896          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--TINAD  225 (290)
Q Consensus       153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~~~~~~~v~~i~~~~~~~-~v~~~---~g~--~~~~d  225 (290)
                      ..+..  .+.+|+++++.+.+.  ..+    .+.+.+. +.||+++.++.++++..+++.+ .+.+.   +|+  ++++|
T Consensus       160 ~~l~~--~g~~Vtlv~~~~~~~--~~~----~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D  231 (311)
T 2q0l_A          160 IYLAN--ICKKVYLIHRRDGFR--CAP----ITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVP  231 (311)
T ss_dssp             HHHHT--TSSEEEEECSSSSCC--SCH----HHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECS
T ss_pred             HHHHh--cCCEEEEEeeCCccC--CCH----HHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecC
Confidence            99986  488999999987652  222    3444554 4799999999999887654432 34433   565  78999


Q ss_pred             EEEEccCCCCCchhhcccc--cccccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896          226 CHFLCTGKPVGSDWLKDTI--LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       226 ~vv~a~G~~~~~~~l~~~~--~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                      .|++|+|+.|+.+++...+  .++.++++|++.||+++|+ +.|+|||+|||++.
T Consensus       232 ~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~  285 (311)
T 2q0l_A          232 GFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT-NVQGLFAAGDIRIF  285 (311)
T ss_dssp             EEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECSTTBTT
T ss_pred             EEEEEecCccChhhhhcccccceeEeccCCCEEeCCcccc-CCCCeEEcccccCc
Confidence            9999999999999988764  1235678899999999997 79999999999986

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=1.2e-34  Score=241.08  Aligned_cols=257  Identities=14%  Similarity=0.163  Sum_probs=179.2

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC----CcccchhhhhhhcC-Ccccc-----ccccccccccc--c
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE----YFEITWASLRAMVE-PSFGK-----RSVINHTDYLV--N   76 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~----~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~--~   76 (290)
                      ..+++||+|||||++||++|++|++ |++|+|||+++    ..++.|........ +.++.     +....+.+++.  +
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   98 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG   98 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence            3456999999999999999999976 99999999954    45555443221100 11111     11111111111  4


Q ss_pred             ceEEeeeeeeeecc--e--EEe---cCceEEeccEEEEccCCCCCCCCchHH------HHHHHHHHHHH--HhcCCeEEE
Q 022896           77 GRIVASPAINITEN--E--VLT---AEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQK--IKSARSILI  141 (290)
Q Consensus        77 ~~~~~~~v~~~~~~--~--v~~---~~~~~~~~~~vi~a~G~~~~~p~~~~~------~~~~~~~~~~~--~~~~~~v~i  141 (290)
                      +.+..+.+..++..  .  +.+   .++..+.||++|+|+|..|..|.....      .++........  ...+++++|
T Consensus        99 v~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  178 (338)
T 3itj_A           99 TEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAV  178 (338)
T ss_dssp             CEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred             CEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEE
Confidence            56666667777765  2  333   366789999999999998655542211      11111111222  346899999


Q ss_pred             EcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhC-CcEEEeCceEeecccCCCce-eEEcCC-
Q 022896          142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD-TYLTST-  218 (290)
Q Consensus       142 iG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~-~v~~~~-  218 (290)
                      +|+|.+++++|..|..  .+.+|+++.+.+.+..      ...+.+.+.+. ||+++.++.+++++.+++.+ .+.+.+ 
T Consensus       179 vG~G~~g~e~a~~l~~--~g~~v~~v~~~~~~~~------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~  250 (338)
T 3itj_A          179 IGGGDSACEEAQFLTK--YGSKVFMLVRKDHLRA------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNT  250 (338)
T ss_dssp             ECSSHHHHHHHHHHTT--TSSEEEEECSSSSCCS------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEET
T ss_pred             ECCCHHHHHHHHHHHh--cCCEEEEEEcCCccCC------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEEC
Confidence            9999999999999986  4889999999887643      34455556555 99999999999998776542 244433 


Q ss_pred             ----CcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEe-cCCccccCCCCeEEeccccCc
Q 022896          219 ----GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV-DENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       219 ----g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v-~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                          ++++++|.||+|+|..|+..++.. ++  .++++|++.+ |.++++ +.|+|||+|||++.
T Consensus       251 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l--~~~~~G~i~v~~~~~~t-~~~~vya~GD~~~~  311 (338)
T 3itj_A          251 KKNEETDLPVSGLFYAIGHTPATKIVAG-QV--DTDEAGYIKTVPGSSLT-SVPGFFAAGDVQDS  311 (338)
T ss_dssp             TTTEEEEEECSEEEECSCEEECCGGGBT-TB--CBCTTSCBCCCTTSSBC-SSTTEEECGGGGCS
T ss_pred             CCCceEEEEeCEEEEEeCCCCChhHhhC-ce--EecCCCcEEEcCccccc-CCCCEEEeeccCCC
Confidence                357999999999999999888876 44  6678999985 667776 89999999999984

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.8e-34  Score=236.97  Aligned_cols=256  Identities=18%  Similarity=0.206  Sum_probs=178.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc-CCcc---c-cccccccccccc--cceEEee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV-EPSF---G-KRSVINHTDYLV--NGRIVAS   82 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~~~--~~~~~~~   82 (290)
                      ..++||+|||||++|+++|++|++ |++|+|||+.. .++.+....... .+.+   . ......+.+...  ++++...
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   92 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGV   92 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETC
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEe
Confidence            345899999999999999999976 99999999954 444332211000 0111   0 011111111111  3455556


Q ss_pred             eeeeeecc----eEEecCceEEeccEEEEccCCCCCCCCchH------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896           83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRT------ERLNQYQAENQKIKSARSILIVGGGPTGVELA  152 (290)
Q Consensus        83 ~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a  152 (290)
                      .+..++..    .+.+ ++..+.||++|+|+|..|..|+...      ..++...........+++++|+|+|.+++|+|
T Consensus        93 ~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a  171 (319)
T 3cty_A           93 EVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAA  171 (319)
T ss_dssp             CEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHH
T ss_pred             eEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHH
Confidence            67776642    3444 5568999999999999865554111      11111111223345689999999999999999


Q ss_pred             HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEc---CCCc--EEeccE
Q 022896          153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADC  226 (290)
Q Consensus       153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~  226 (290)
                      ..+..  .+.+|+++++.+.+.  .    ...+.+.+++.||+++.++.++++..+++. ..+.+   .+|+  ++++|.
T Consensus       172 ~~l~~--~g~~V~~i~~~~~~~--~----~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~  243 (319)
T 3cty_A          172 ISMSE--YVKNVTIIEYMPKYM--C----ENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDG  243 (319)
T ss_dssp             HHHTT--TBSEEEEECSSSSCC--S----CHHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSE
T ss_pred             HHHHh--hCCcEEEEEcCCccC--C----CHHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCE
Confidence            99986  488999999887653  1    234556677899999999999988876542 23333   2564  689999


Q ss_pred             EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          227 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       227 vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      ||+|+|+.|+.+++...++  +++++|++.||+++++ +.|+|||+|||++.+
T Consensus       244 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  293 (319)
T 3cty_A          244 VFIYVGLIPQTSFLKDSGV--KLDERGYIVVDSRQRT-SVPGVYAAGDVTSGN  293 (319)
T ss_dssp             EEECCCEEECCGGGTTSCC--CBCTTSCBCCCTTCBC-SSTTEEECSTTBTTC
T ss_pred             EEEeeCCccChHHHhhccc--cccCCccEeCCCCCcc-CCCCEEEeecccCcc
Confidence            9999999999999987655  5678899999999997 799999999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=7.6e-34  Score=234.50  Aligned_cols=258  Identities=15%  Similarity=0.172  Sum_probs=183.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-cCCccc-----ccccccccccc--ccceEEeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-VEPSFG-----KRSVINHTDYL--VNGRIVASP   83 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~--~~~~~~~~~   83 (290)
                      ++||+|||||++|+++|++|++ |++|+|||+.. .++.+...... ..+.++     ......+..+.  .+.++..+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence            5899999999999999999986 99999999763 44433221100 001111     01111111111  134666667


Q ss_pred             eeeeecc--eEE-ecCceEEeccEEEEccCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896           84 AINITEN--EVL-TAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGE  154 (290)
Q Consensus        84 v~~~~~~--~v~-~~~~~~~~~~~vi~a~G~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~  154 (290)
                      +..++..  .+. +.++..+.||++++|+|..|..|+.....      ++...........+++++|+|+|.+++|+|..
T Consensus        84 v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~  163 (320)
T 1trb_A           84 INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALY  163 (320)
T ss_dssp             EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHH
T ss_pred             eeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHH
Confidence            7777754  222 56777899999999999987766532211      11111222334578999999999999999999


Q ss_pred             HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCC----C--cEEeccEE
Q 022896          155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST----G--DTINADCH  227 (290)
Q Consensus       155 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~----g--~~~~~d~v  227 (290)
                      |..  .+.+|+++++.+.+.  ..+.+.+.+.+.+++.||+++.++.++++..+++.+ .+.+.+    |  +++++|.|
T Consensus       164 l~~--~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~v  239 (320)
T 1trb_A          164 LSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL  239 (320)
T ss_dssp             HTT--TSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEE
T ss_pred             HHh--cCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEE
Confidence            986  488999999887653  355677788888999999999999999988766442 244332    4  57999999


Q ss_pred             EEccCCCCCchhhcccccccccCCCCcEEecCCc----cccCCCCeEEeccccCcc
Q 022896          228 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL----RVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       228 v~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~----~~~~~~~vfa~Gd~~~~~  279 (290)
                      |+|+|..|+.+++. .++  +++ +|++.+|+++    +.+++|+||++|||++.+
T Consensus       240 v~a~G~~p~~~~~~-~~l--~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~  291 (320)
T 1trb_A          240 FVAIGHSPNTAIFE-GQL--ELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI  291 (320)
T ss_dssp             EECSCEEESCGGGT-TTS--CEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSS
T ss_pred             EEEeCCCCChHHhc-ccc--ccc-CceEEECCCcccccccCCCCCEEEcccccCCc
Confidence            99999999988887 334  456 8999999986    334899999999999875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-34  Score=240.47  Aligned_cols=259  Identities=17%  Similarity=0.192  Sum_probs=183.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh----cCCccc----cccccccccccc--cceE-
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM----VEPSFG----KRSVINHTDYLV--NGRI-   79 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~--~~~~-   79 (290)
                      .++||+|||||++|+++|++|++ |++|+|||+++.+++.|......    ..+.+.    .+....+.+...  +..+ 
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYS   83 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEE
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            35899999999999999999975 99999999998887766432110    000000    011111111111  2233 


Q ss_pred             Eeeeeeeeecc----eEEecCceEEeccEEEEccCCC---CCCC---CchH---HHHHHHHHHHHHHhcCCeEEEEcCch
Q 022896           80 VASPAINITEN----EVLTAEGRRVVYDYLVIATGHK---DPVP---KTRT---ERLNQYQAENQKIKSARSILIVGGGP  146 (290)
Q Consensus        80 ~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~---~~~p---~~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~  146 (290)
                      ....|..++..    .+.+.++.++.||++|+|+|..   |..|   +...   ..++.... ......+++++|+|+|.
T Consensus        84 ~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~v~viG~G~  162 (335)
T 2zbw_A           84 LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVK-SKAEFQGKRVLIVGGGD  162 (335)
T ss_dssp             ESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCS-CGGGGTTCEEEEECSSH
T ss_pred             eCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecC-chhhcCCCEEEEECCCH
Confidence            35567777653    3666677789999999999994   4433   3110   00100000 00112579999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcC---CC--cE
Q 022896          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TG--DT  221 (290)
Q Consensus       147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~---~g--~~  221 (290)
                      +++|+|..|..  .+.+|+++.+.+.+..  .+.....+.+.+++.||+++.++.+++++.+++...+.+.   +|  ++
T Consensus       163 ~g~e~a~~l~~--~g~~V~~v~~~~~~~~--~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~  238 (335)
T 2zbw_A          163 SAVDWALNLLD--TARRITLIHRRPQFRA--HEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELA  238 (335)
T ss_dssp             HHHHHHHHTTT--TSSEEEEECSSSSCCS--CHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHHHh--hCCEEEEEEcCCccCc--cHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEE
Confidence            99999999986  4889999999887643  2467778888889999999999999988874332344443   66  57


Q ss_pred             EeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          222 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       222 ~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +++|.+++|+|+.|+.++++..++.  ++ +|++.||+++|+ +.|+|||+|||+..+
T Consensus       239 i~~D~vi~a~G~~p~~~~l~~~~~~--~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~  292 (335)
T 2zbw_A          239 LEVDAVLILAGYITKLGPLANWGLA--LE-KNKIKVDTTMAT-SIPGVYACGDIVTYP  292 (335)
T ss_dssp             EECSEEEECCCEEEECGGGGGSCCC--EE-TTEEECCTTCBC-SSTTEEECSTTEECT
T ss_pred             EecCEEEEeecCCCCchHhhhccee--cc-CCeeeeCCCCCC-CCCCEEEeccccccC
Confidence            9999999999999988888876664  34 689999999997 799999999999764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.1e-34  Score=237.57  Aligned_cols=268  Identities=17%  Similarity=0.204  Sum_probs=178.1

Q ss_pred             Ccchhhhh-ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-cCCccc-----ccccccccc
Q 022896            1 MESRRQQQ-SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-VEPSFG-----KRSVINHTD   72 (290)
Q Consensus         1 m~~~~~~~-~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~   72 (290)
                      |+.++..+ ++..++||+|||||++|+++|++|++ |++|+|||+.. .++.|...... ..+.+.     .+....+.+
T Consensus         1 m~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   79 (335)
T 2a87_A            1 MTAPPVHDRAHHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMTTTDVENYPGFRNGITGPELMDEMRE   79 (335)
T ss_dssp             ---------CCCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHH
T ss_pred             CCCCCCCccccCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceeccchhhhcCCCCCCCCHHHHHHHHHH
Confidence            55544433 23456899999999999999999976 99999999863 44433221100 001110     011111111


Q ss_pred             ccc--cceEEeeeeeeeecc---eE-EecCceEEeccEEEEccCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEE
Q 022896           73 YLV--NGRIVASPAINITEN---EV-LTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSIL  140 (290)
Q Consensus        73 ~~~--~~~~~~~~v~~~~~~---~v-~~~~~~~~~~~~vi~a~G~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~  140 (290)
                      +..  ++++..+.+..++..   .+ .+.++..+.||++|+|+|..|..|+....      .++.+.........+++++
T Consensus        80 ~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~  159 (335)
T 2a87_A           80 QALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIA  159 (335)
T ss_dssp             HHHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEE
T ss_pred             HHHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchhhcCCCEEE
Confidence            111  345666667777652   35 66777889999999999998766552221      1111122223345689999


Q ss_pred             EEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcC---
Q 022896          141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---  217 (290)
Q Consensus       141 iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~---  217 (290)
                      |+|+|.+++|+|..+..  .+.+|+++++.+.+..  .+.+.   .+.+++.||+++.++.+++++.+++...+.+.   
T Consensus       160 ViG~G~~g~e~a~~l~~--~g~~V~l~~~~~~~~~--~~~~~---~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~  232 (335)
T 2a87_A          160 VIGGGDSAMEEATFLTR--FARSVTLVHRRDEFRA--SKIML---DRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTN  232 (335)
T ss_dssp             EECSSHHHHHHHHHHTT--TCSEEEEECSSSSCSS--CTTHH---HHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEET
T ss_pred             EECCCHHHHHHHHHHHH--hCCeEEEEEcCCcCCc--cHHHH---HHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcC
Confidence            99999999999999986  4889999998876532  12222   23456789999999999988766543233332   


Q ss_pred             CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          218 TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       218 ~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +|  +++++|.|++|+|..|+.+++. .++  .++++|++.||++++.++.|+|||+|||++.+
T Consensus       233 ~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l--~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~  293 (335)
T 2a87_A          233 TGAETTLPVTGVFVAIGHEPRSGLVR-EAI--DVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRT  293 (335)
T ss_dssp             TSCCEEECCSCEEECSCEEECCTTTB-TTB--CBCTTSCBCCSTTSSBCSSTTEEECGGGTCCS
T ss_pred             CCceEEeecCEEEEccCCccChhHhh-ccc--ccCCCccEEeCCCCCccCCCCEEEeeecCCcc
Confidence            34  4799999999999999988886 333  56788999999975444899999999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=6.9e-34  Score=233.73  Aligned_cols=253  Identities=20%  Similarity=0.247  Sum_probs=177.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh---cCCccc--cccccccccccc--cceEEee-e
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM---VEPSFG--KRSVINHTDYLV--NGRIVAS-P   83 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~--~~~~~~~-~   83 (290)
                      ++||+|||||++|+++|.+|++ |++|+|||+.  .++.|......   ......  ......+.+++.  ++++..+ .
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQS   78 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC--CCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCE
Confidence            3799999999999999999986 9999999864  34444321110   000000  011111112211  3456655 7


Q ss_pred             eeeeecc-------eEEecCceEEeccEEEEccCCCCCCC---Cch---HHHHHHHHHHHHHHhcCCeEEEEcCchhHHH
Q 022896           84 AINITEN-------EVLTAEGRRVVYDYLVIATGHKDPVP---KTR---TERLNQYQAENQKIKSARSILIVGGGPTGVE  150 (290)
Q Consensus        84 v~~~~~~-------~v~~~~~~~~~~~~vi~a~G~~~~~p---~~~---~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~  150 (290)
                      +..+++.       .+.+.++..+.||++|+|+|..|..|   +..   ...++.+.........+++++|+|+|.+++|
T Consensus        79 v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e  158 (310)
T 1fl2_A           79 ASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVE  158 (310)
T ss_dssp             EEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHH
T ss_pred             EEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHH
Confidence            7777542       46677777899999999999885443   321   1111112222234457899999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEcC---CCc--EEe
Q 022896          151 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--TIN  223 (290)
Q Consensus       151 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~~---~g~--~~~  223 (290)
                      +|..|..  .+.+|+++++.+.+.  .+    ..+.+.+++ .||+++.++.++++..+++.+ .+.+.   +|+  +++
T Consensus       159 ~A~~l~~--~g~~Vtlv~~~~~~~--~~----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~  230 (310)
T 1fl2_A          159 AAIDLAG--IVEHVTLLEFAPEMK--AD----QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIE  230 (310)
T ss_dssp             HHHHHHT--TBSEEEEECSSSSCC--SC----HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHHH--hCCEEEEEEeCcccC--cc----HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEE
Confidence            9999986  488999999988762  22    345566776 699999999999888665542 34432   353  689


Q ss_pred             ccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          224 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       224 ~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +|.|++|+|..|+.+++...   +.++++|++.||+++|+ +.|+|||+|||+..+
T Consensus       231 ~D~vi~a~G~~p~~~~l~~~---l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  282 (310)
T 1fl2_A          231 LAGIFVQIGLLPNTNWLEGA---VERNRMGEIIIDAKCET-NVKGVFAAGDCTTVP  282 (310)
T ss_dssp             CSEEEECSCEEESCGGGTTT---SCBCTTSCBCCCTTCBC-SSTTEEECSTTBSCS
T ss_pred             cCEEEEeeCCccCchHHhcc---ccccCCCcEEcCCCCcc-CCCCEEEeecccCCc
Confidence            99999999999998888753   46678899999999996 899999999999976

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=2.9e-33  Score=238.48  Aligned_cols=262  Identities=18%  Similarity=0.199  Sum_probs=186.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc----CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~----g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      +||+|||||++|+++|.+|++    |++|+|||+++.+.+...............+....+.+++.  +++++.+.|+.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            689999999999999999954    89999999999765443222111111112222233333332  467778889988


Q ss_pred             ecc--eEEecCce----EEeccEEEEccCCCCCCC---CchH-----HHHHHHHHHHHHHhc-CCeEEEEcCch------
Q 022896           88 TEN--EVLTAEGR----RVVYDYLVIATGHKDPVP---KTRT-----ERLNQYQAENQKIKS-ARSILIVGGGP------  146 (290)
Q Consensus        88 ~~~--~v~~~~~~----~~~~~~vi~a~G~~~~~p---~~~~-----~~~~~~~~~~~~~~~-~~~v~iiG~g~------  146 (290)
                      +++  .+.+.++.    ++.||+||+|+|..|..|   +...     ....+.....+.+.. .++++|||+|.      
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~  161 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN  161 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCS
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCC
Confidence            876  56666554    489999999999986644   4211     111122222332222 36677899881      


Q ss_pred             -------------------hHHHHHHHHhhh--CCC----CeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCce
Q 022896          147 -------------------TGVELAGEIAVD--FPE----KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       147 -------------------~~~~~a~~l~~~--~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                                         .++|++..+...  ..+    .+|+++++.+ .++.+++.+.+.+.+.+++.||+++.++.
T Consensus       162 ~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~  240 (409)
T 3h8l_A          162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFK  240 (409)
T ss_dssp             SCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             ccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCc
Confidence                               366777554321  123    4899999987 66777889999999999999999999999


Q ss_pred             EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896          202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      |++++.+.    +.+.+|+++++|.+++++|..|+ +++...+..+ .+++|++.||+++|++++||||++|||++.+.+
T Consensus       241 v~~i~~~~----v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~  314 (409)
T 3h8l_A          241 IKEIREHE----IVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVP  314 (409)
T ss_dssp             EEEECSSE----EEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCS
T ss_pred             eEEECCCe----EEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCC
Confidence            98776532    67788999999999999999986 6777763333 467899999999999889999999999986544


Q ss_pred             c
Q 022896          282 A  282 (290)
Q Consensus       282 ~  282 (290)
                      +
T Consensus       315 ~  315 (409)
T 3h8l_A          315 K  315 (409)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=5.9e-33  Score=238.25  Aligned_cols=263  Identities=20%  Similarity=0.199  Sum_probs=182.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc----CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEEeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAIN   86 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~----g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~   86 (290)
                      ++||+|||||++|+++|.+|++    +++|+|||+++.+.+...............+....+.+++  .+++++.+.++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~   83 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQ   83 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEE
Confidence            5899999999999999999964    8999999999976544322222112111222223333333  256788889999


Q ss_pred             eecc--eEEecCceEEeccEEEEccCCCCC---CCCch--------HHHHHHHHHH---HHHHhcCCeEEEEcCchhH--
Q 022896           87 ITEN--EVLTAEGRRVVYDYLVIATGHKDP---VPKTR--------TERLNQYQAE---NQKIKSARSILIVGGGPTG--  148 (290)
Q Consensus        87 ~~~~--~v~~~~~~~~~~~~vi~a~G~~~~---~p~~~--------~~~~~~~~~~---~~~~~~~~~v~iiG~g~~~--  148 (290)
                      ++++  .+.++++.++.||++|+|+|+.|.   +|+..        .....+....   .......++++|||+|+.+  
T Consensus        84 id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~  163 (437)
T 3sx6_A           84 IDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASC  163 (437)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCC
T ss_pred             EEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCc
Confidence            9876  688888888999999999999854   44421        1122222222   2233335667888886543  


Q ss_pred             ----HHHHHHHhhh--CCCC----e-EEEEecCcccccc---CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896          149 ----VELAGEIAVD--FPEK----K-VTLVHKGSRLLEF---IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  214 (290)
Q Consensus       149 ----~~~a~~l~~~--~~~~----~-v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v  214 (290)
                          +|+|..+...  ..+.    + |+++++.+.+...   ..+.....+.+.+++.||+++.++.|++++.  +++.+
T Consensus       164 ~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v~~  241 (437)
T 3sx6_A          164 FGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVED--NKMYV  241 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEET--TEEEE
T ss_pred             CcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEEC--CeEEE
Confidence                7777544321  1233    3 9999998876321   1135778888999999999999999987764  34433


Q ss_pred             E--cCC-----CcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          215 L--TST-----GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       215 ~--~~~-----g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .  ..+     ++++++|.+++++|..+...+....++   .+++|++.||+++|++++|||||+|||++.+.
T Consensus       242 ~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl---~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~  311 (437)
T 3sx6_A          242 TQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL---CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPP  311 (437)
T ss_dssp             EEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT---BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCC
T ss_pred             EecccCCccccceEEEEeEEEEcCCCcCchhhhccccc---cCCCCcEEeChhccCCCCCCEEEEEEEeccCC
Confidence            3  233     457899999999998876555444454   47889999999999988999999999999764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=8.2e-33  Score=246.13  Aligned_cols=264  Identities=17%  Similarity=0.164  Sum_probs=183.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC-C-------Ccccchhhhhhh--------------------cCCc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK-E-------YFEITWASLRAM--------------------VEPS   61 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~-~-------~~~~~~~~~~~~--------------------~~~~   61 (290)
                      ..++||+||||||+|++||.+|++ |++|+|||+. +       .+|+.|......                    ....
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~  184 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS  184 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence            446999999999999999999976 9999999973 2       244432111000                    0000


Q ss_pred             ccc----cccccccc---------------cc--ccceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCCCCCC
Q 022896           62 FGK----RSVINHTD---------------YL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        62 ~~~----~~~~~~~~---------------~~--~~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~~~~p  116 (290)
                      ...    ..+..+.+               .+  .+++++.+.+..+++..+..  .+|  .++.||+||+|||++|..|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p  264 (598)
T 2x8g_A          185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP  264 (598)
T ss_dssp             CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCC
Confidence            000    00000000               01  14566777777777765443  445  4789999999999987766


Q ss_pred             CchHHH--HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCc
Q 022896          117 KTRTER--LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  194 (290)
Q Consensus       117 ~~~~~~--~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  194 (290)
                      +..+..  .............+++++|||+|.+|+|+|..+..  .+.+|+++++. .+++.+++.+...+.+.+++.||
T Consensus       265 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv  341 (598)
T 2x8g_A          265 EIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLAS--LGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGV  341 (598)
T ss_dssp             SSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCC
Confidence            522211  01111122222356899999999999999999987  48899999988 66777888999999999999999


Q ss_pred             EEEeCceEeeccc------CC---CceeE--EcCCCcEEe--ccEEEEccCCCCCchhhcccccccccCCCCcEEecCCc
Q 022896          195 DVKLGERVNLDSV------SE---GSDTY--LTSTGDTIN--ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL  261 (290)
Q Consensus       195 ~~~~~~~v~~i~~------~~---~~~~v--~~~~g~~~~--~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~  261 (290)
                      +++.++.++++..      ++   +.+.+  ...+|++++  +|.|++|+|..|+.+++.....+++++++|+|.||+++
T Consensus       342 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~  421 (598)
T 2x8g_A          342 KFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE  421 (598)
T ss_dssp             EEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTS
T ss_pred             EEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCC
Confidence            9999988776642      12   33333  345776555  99999999999998875433334466788999999999


Q ss_pred             cccCCCCeEEeccccCc
Q 022896          262 RVKGQKNIFAIGDITDI  278 (290)
Q Consensus       262 ~~~~~~~vfa~Gd~~~~  278 (290)
                      |+ +.|+|||+|||+..
T Consensus       422 ~t-s~~~VyA~GD~~~~  437 (598)
T 2x8g_A          422 QT-TVSNVYAIGDINAG  437 (598)
T ss_dssp             BC-SSTTEEECGGGBTT
T ss_pred             cC-CCCCEEEEeeecCC
Confidence            97 79999999999643

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=4.3e-34  Score=237.11  Aligned_cols=253  Identities=17%  Similarity=0.226  Sum_probs=180.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc----CCccc----cccccccccccc--cceEE-
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV----EPSFG----KRSVINHTDYLV--NGRIV-   80 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~--~~~~~-   80 (290)
                      ++||+|||||++|+++|++|++ |++|+|||+++.+++.|.......    .+.+.    .+....+.++..  +..+. 
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL   86 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence            5899999999999999999976 999999999999887774321100    01111    111111112221  23444 


Q ss_pred             eeeeeeeecc-----eEEecCceEEeccEEEEccCC---CCCCCC---chH---HHHHHHHHHHHHHhcCCeEEEEcCch
Q 022896           81 ASPAINITEN-----EVLTAEGRRVVYDYLVIATGH---KDPVPK---TRT---ERLNQYQAENQKIKSARSILIVGGGP  146 (290)
Q Consensus        81 ~~~v~~~~~~-----~v~~~~~~~~~~~~vi~a~G~---~~~~p~---~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~  146 (290)
                      ...|..++..     .+.+.++. +.||++|+|+|.   .|..|.   ...   ..++. .........+++++|+|+|.
T Consensus        87 ~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~  164 (332)
T 3lzw_A           87 EQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGD  164 (332)
T ss_dssp             SCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSH
T ss_pred             cCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCH
Confidence            5777777653     45666664 999999999999   655443   211   11111 00011122579999999999


Q ss_pred             hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC-----CcE
Q 022896          147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-----GDT  221 (290)
Q Consensus       147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~-----g~~  221 (290)
                      +++++|..+..  .+.+|+++.+.+.+...      ....+.+++.||+++.++.++++..+++...+.+.+     +++
T Consensus       165 ~~~e~a~~l~~--~~~~v~~~~~~~~~~~~------~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~  236 (332)
T 3lzw_A          165 SAVDWALMLEP--IAKEVSIIHRRDKFRAH------EHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEI  236 (332)
T ss_dssp             HHHHHHHHHTT--TBSEEEEECSSSSCSSC------HHHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEE
T ss_pred             hHHHHHHHHHh--hCCeEEEEEecCcCCcc------HHHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEE
Confidence            99999999986  47899999998876321      122345788999999999999988766555555443     357


Q ss_pred             EeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          222 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       222 ~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +++|.|++|+|..|+.++++..++.  + ++|++.||+++++ +.|+|||+|||+..+
T Consensus       237 ~~~D~vv~a~G~~p~~~~~~~~~~~--~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~  290 (332)
T 3lzw_A          237 LEIDDLIVNYGFVSSLGPIKNWGLD--I-EKNSIVVKSTMET-NIEGFFAAGDICTYE  290 (332)
T ss_dssp             EECSEEEECCCEECCCGGGGGSSCC--E-ETTEEECCTTSBC-SSTTEEECGGGEECT
T ss_pred             EECCEEEEeeccCCCchHHhhcCcc--c-cCCeEEeCCCCce-ecCCEEEccceecCC
Confidence            9999999999999999998887764  3 6799999999998 799999999999643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=2.3e-33  Score=235.31  Aligned_cols=259  Identities=21%  Similarity=0.206  Sum_probs=183.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh----cCCccc----cccccccccccc--cceEE
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM----VEPSFG----KRSVINHTDYLV--NGRIV   80 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~--~~~~~   80 (290)
                      .++||+|||||++|+++|++|++ |++|+|||+++.+++.|......    ..+.+.    ......+.+.+.  +..+.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   92 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVV   92 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEE
Confidence            36899999999999999999975 99999999998887766432110    000110    011111111111  23333


Q ss_pred             -eeeeeeeecc-----eEEecCceEEeccEEEEccCCC---CCCCCchH--HH-----HHHHHHHHHHHhcCCeEEEEcC
Q 022896           81 -ASPAINITEN-----EVLTAEGRRVVYDYLVIATGHK---DPVPKTRT--ER-----LNQYQAENQKIKSARSILIVGG  144 (290)
Q Consensus        81 -~~~v~~~~~~-----~v~~~~~~~~~~~~vi~a~G~~---~~~p~~~~--~~-----~~~~~~~~~~~~~~~~v~iiG~  144 (290)
                       ...|+.++..     .+.+.++..+.||++|+|+|..   |..|+...  ..     ++.... ......+++++|+|+
T Consensus        93 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~-~~~~~~~~~vvVvG~  171 (360)
T 3ab1_A           93 LNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVK-SVEDFKGKRVVIVGG  171 (360)
T ss_dssp             CSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCS-CGGGGTTCEEEEECS
T ss_pred             cCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecC-CHHHcCCCcEEEECC
Confidence             4567777643     4667777789999999999994   44333111  00     100000 001125799999999


Q ss_pred             chhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEc--CCC--
Q 022896          145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--STG--  219 (290)
Q Consensus       145 g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~--~~g--  219 (290)
                      |.+++++|..|..  .+.+|+++.+.+.+...  +.+.+.+.+.+++.||+++.++.++++..+++.+ .+.+  .+|  
T Consensus       172 G~~g~e~A~~l~~--~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~  247 (360)
T 3ab1_A          172 GDSALDWTVGLIK--NAASVTLVHRGHEFQGH--GKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSK  247 (360)
T ss_dssp             SHHHHHHHHHTTT--TSSEEEEECSSSSCSSC--SHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCE
T ss_pred             CHHHHHHHHHHHh--cCCEEEEEEcCCCCCCC--HHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCe
Confidence            9999999999986  48899999998766432  3566777888889999999999999888765532 3433  466  


Q ss_pred             cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          220 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       220 ~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      +++++|.||+|+|+.|+.++++..++.  ++ +|++.||+++++ +.|+|||+|||+..+
T Consensus       248 ~~i~~D~vi~a~G~~p~~~~l~~~~~~--~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~  303 (360)
T 3ab1_A          248 WTVEADRLLILIGFKSNLGPLARWDLE--LY-ENALVVDSHMKT-SVDGLYAAGDIAYYP  303 (360)
T ss_dssp             EEEECSEEEECCCBCCSCGGGGGSSCC--EE-TTEEECCTTSBC-SSTTEEECSTTEECT
T ss_pred             EEEeCCEEEECCCCCCCHHHHHhhccc--cc-cCeeeecCCCcC-CCCCEEEecCccCCC
Confidence            579999999999999998898876664  34 789999999998 799999999999764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=1.6e-33  Score=237.06  Aligned_cols=260  Identities=17%  Similarity=0.232  Sum_probs=178.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCCcccchhhhhhh---cCCccc------------------------
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEYFEITWASLRAM---VEPSFG------------------------   63 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~~~~~~~~~~~~---~~~~~~------------------------   63 (290)
                      ++||+|||||++|+++|++|++ |+ +|+|||+++ +|+.|......   ..+.+.                        
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   82 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE   82 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence            4899999999999999999976 88 999999998 66544321100   000000                        


Q ss_pred             ---c-ccc-cccccccc--cceEEe-eeeeeeecc----eEEecCceEEeccEEEEccCCC--CCCCCchHHHHHHHHHH
Q 022896           64 ---K-RSV-INHTDYLV--NGRIVA-SPAINITEN----EVLTAEGRRVVYDYLVIATGHK--DPVPKTRTERLNQYQAE  129 (290)
Q Consensus        64 ---~-~~~-~~~~~~~~--~~~~~~-~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~--~~~p~~~~~~~~~~~~~  129 (290)
                         . ..+ ..+..+..  ++.+.. ..|..+++.    .+.+.++ .+.||+||+|+|..  |.+|+  ...++. ...
T Consensus        83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~p~ip~--~~~~~~-~~~  158 (369)
T 3d1c_A           83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNFPKKPF--KYGIHY-SEI  158 (369)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTSBCCCS--SSCEEG-GGC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCccCCCC--Cceech-hhc
Confidence               0 000 00111111  234443 467777654    3555555 68999999999987  55664  111111 011


Q ss_pred             HH-HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-------cCChhHHHHHHHHHHhCC-cEEEeCc
Q 022896          130 NQ-KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------FIGPKAGDKTRDWLISKK-VDVKLGE  200 (290)
Q Consensus       130 ~~-~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g-i~~~~~~  200 (290)
                      .. ....+++++|+|+|.+|+|+|..|..  .+.+|+++++.+.+..       .+.+.+.+.+.+.+++.| |+++.++
T Consensus       159 ~~~~~~~~~~vvVvG~G~~g~e~a~~l~~--~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~  236 (369)
T 3d1c_A          159 EDFDNFNKGQYVVIGGNESGFDAAYQLAK--NGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHY  236 (369)
T ss_dssp             SCGGGSCSSEEEEECCSHHHHHHHHHHHH--TTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CChhhcCCCEEEEECCCcCHHHHHHHHHh--cCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCc
Confidence            11 11256799999999999999999987  4889999999877653       144566788888899997 9999999


Q ss_pred             eEeecccCCCceeEEcCCCcEEe-ccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          201 RVNLDSVSEGSDTYLTSTGDTIN-ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~~~-~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      .|.+++.+++...+.+.+|+++. +|.+|+|+|+.|+.+++....+  + +++|++.||++++.+++|+||++|||+..+
T Consensus       237 ~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~--~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~  313 (369)
T 3d1c_A          237 TVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLF--V-TTNQDIKLTTHDESTRYPNIFMIGATVEND  313 (369)
T ss_dssp             CEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHS--C-CTTSCCCBCTTSBBSSSTTEEECSTTCCCS
T ss_pred             EEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhc--c-CCCCCEEechhhcccCCCCeEEeccccccC
Confidence            99888655566677788887665 6999999999998866665444  3 678999999986666899999999999876


Q ss_pred             ccc
Q 022896          280 VSA  282 (290)
Q Consensus       280 ~~~  282 (290)
                      ...
T Consensus       314 ~~~  316 (369)
T 3d1c_A          314 NAK  316 (369)
T ss_dssp             SCC
T ss_pred             Cee
Confidence            654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=3.4e-33  Score=231.87  Aligned_cols=255  Identities=16%  Similarity=0.211  Sum_probs=175.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcC----CCCcccchhhhhhhc-CCccc-----ccccccccccc--ccceE
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDP----KEYFEITWASLRAMV-EPSFG-----KRSVINHTDYL--VNGRI   79 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~----~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~--~~~~~   79 (290)
                      ++||+|||||++|+++|++|++ |++|+|||+    ....++.+....... .+.++     ......+.++.  .++++
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~   87 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   87 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEE
Confidence            5899999999999999999976 999999999    444444332211000 01110     01111111111  13566


Q ss_pred             Eeeeeeeeecc----eEEecCceEEeccEEEEccCCCCCCCC---chH-------HHHHHHHHHHHHH--hcCCeEEEEc
Q 022896           80 VASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPK---TRT-------ERLNQYQAENQKI--KSARSILIVG  143 (290)
Q Consensus        80 ~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~~-------~~~~~~~~~~~~~--~~~~~v~iiG  143 (290)
                      ..+.+..++..    .+.+ ++..+.+|++|+|+|..|..|+   ...       ..++.+.......  ..+++++|+|
T Consensus        88 ~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  166 (333)
T 1vdc_A           88 FTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIG  166 (333)
T ss_dssp             ECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEEC
T ss_pred             EEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEEC
Confidence            66667777653    3555 6778999999999999855443   211       1111111122222  5689999999


Q ss_pred             CchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHH-HHHHhCCcEEEeCceEeecccCCC--ce-eEEcC--
Q 022896          144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR-DWLISKKVDVKLGERVNLDSVSEG--SD-TYLTS--  217 (290)
Q Consensus       144 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gi~~~~~~~v~~i~~~~~--~~-~v~~~--  217 (290)
                      +|.+++|+|..|..  .+.+|+++++.+.+..      ...+. +.+++.||+++.++.++++..+++  .+ .+.+.  
T Consensus       167 ~G~~g~e~A~~l~~--~g~~V~lv~~~~~~~~------~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~  238 (333)
T 1vdc_A          167 GGDSAMEEANFLTK--YGSKVYIIHRRDAFRA------SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNV  238 (333)
T ss_dssp             CSHHHHHHHHHHTT--TSSEEEEECSSSSCCS------CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEET
T ss_pred             CChHHHHHHHHHHh--cCCeEEEEecCCcCCc------cHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEec
Confidence            99999999999986  4889999999876521      12333 445678999999999998887654  32 24332  


Q ss_pred             -CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          218 -TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       218 -~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                       +|  +++++|.|++|+|..|+.++++ .++  .++++|++.+|++++.++.|+|||+|||++.+
T Consensus       239 ~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l--~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~  300 (333)
T 1vdc_A          239 VTGDVSDLKVSGLFFAIGHEPATKFLD-GGV--ELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKK  300 (333)
T ss_dssp             TTCCEEEEECSEEEECSCEEESCGGGT-TSS--CBCTTSCBCCCTTSCBCSSTTEEECGGGGCSS
T ss_pred             CCCceEEEecCEEEEEeCCccchHHhh-ccc--cccCCCCEEechhhcccCCCCEEEeeeccCCC
Confidence             45  4789999999999999988886 233  56788999999985334899999999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.98  E-value=9.9e-32  Score=234.87  Aligned_cols=256  Identities=20%  Similarity=0.268  Sum_probs=178.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh---cCCcc--ccccccccccccc--cceEEee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM---VEPSF--GKRSVINHTDYLV--NGRIVAS   82 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~--~~~~~~~   82 (290)
                      ...+||+|||||++|+++|.+|++ |++|+|+|+.  .|+.|......   .....  .......+.+.+.  ++++..+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~  287 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDS  287 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcC
Confidence            347899999999999999999976 9999999873  44444321110   00000  0011111111111  3455554


Q ss_pred             -eeeeeecc-------eEEecCceEEeccEEEEccCCCCC---CCCchH---HHHHHHHHHHHHHhcCCeEEEEcCchhH
Q 022896           83 -PAINITEN-------EVLTAEGRRVVYDYLVIATGHKDP---VPKTRT---ERLNQYQAENQKIKSARSILIVGGGPTG  148 (290)
Q Consensus        83 -~v~~~~~~-------~v~~~~~~~~~~~~vi~a~G~~~~---~p~~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~~~  148 (290)
                       .|..+++.       .+.+.++..+.||++|+|+|..|.   +|+...   ..+..+.........+++++|+|+|.+|
T Consensus       288 ~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g  367 (521)
T 1hyu_A          288 QSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSG  367 (521)
T ss_dssp             CCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHH
T ss_pred             CEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHH
Confidence             77777542       467778888999999999998754   344211   1111111111233468999999999999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEcC---CCc--E
Q 022896          149 VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--T  221 (290)
Q Consensus       149 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~~---~g~--~  221 (290)
                      +|+|..|...  +.+|+++++.+.+..  +    ..+.+.+++ .||+++.++.++++..+++.+ .+.+.   +|+  +
T Consensus       368 ~E~A~~L~~~--g~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~  439 (521)
T 1hyu_A          368 VEAAIDLAGI--VEHVTLLEFAPEMKA--D----QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHS  439 (521)
T ss_dssp             HHHHHHHHHH--BSEEEEECSSSSCCS--C----HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHhh--CCEEEEEEeCcccCc--C----HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEE
Confidence            9999999874  889999999877642  1    345666777 699999999999888765543 34432   354  6


Q ss_pred             EeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          222 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       222 ~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +++|.|++|+|..|+.+++...   ++++++|++.||+++++ +.|+|||+|||++.+.
T Consensus       440 i~~D~vi~a~G~~pn~~~l~~~---l~~~~~G~I~Vd~~~~t-s~p~VfA~GD~~~~~~  494 (521)
T 1hyu_A          440 VALAGIFVQIGLLPNTHWLEGA---LERNRMGEIIIDAKCET-SVKGVFAAGDCTTVPY  494 (521)
T ss_dssp             EECSEEEECCCEEESCGGGTTT---SCBCTTSCBCCCTTCBC-SSTTEEECSTTBCCSS
T ss_pred             EEcCEEEECcCCCCCchHHhhh---hccCCCCcEEeCCCCCC-CCCCEEEeecccCCCc
Confidence            8999999999999999888762   46678899999999998 7999999999998763

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.97  E-value=1.9e-31  Score=230.86  Aligned_cols=263  Identities=16%  Similarity=0.188  Sum_probs=170.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-----CcEEEEcCCCCcccchhhhhh--hc------------CCccccc-------
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-----ADVTLIDPKEYFEITWASLRA--MV------------EPSFGKR-------   65 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-----~~v~vie~~~~~~~~~~~~~~--~~------------~~~~~~~-------   65 (290)
                      .+||+|||||++|+++|.+|++ |     .+|+|||+++.++.....+..  .+            .+.....       
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~  109 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHK  109 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhh
Confidence            5799999999999999999976 7     999999999977633221100  00            0000000       


Q ss_pred             ---------------ccccccccc----c--cceE-Eeeeeeeeecc---------eEEecCce----EEeccEEEEccC
Q 022896           66 ---------------SVINHTDYL----V--NGRI-VASPAINITEN---------EVLTAEGR----RVVYDYLVIATG  110 (290)
Q Consensus        66 ---------------~~~~~~~~~----~--~~~~-~~~~v~~~~~~---------~v~~~~~~----~~~~~~vi~a~G  110 (290)
                                     ....+.+++    .  +..+ ....|+.++..         .+.+.++.    ++.||+||+|||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG  189 (463)
T 3s5w_A          110 HDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG  189 (463)
T ss_dssp             TTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCC
T ss_pred             cCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCC
Confidence                           000000111    1  1222 34557666543         45555554    899999999999


Q ss_pred             CCCCCCCch----H--HHHHHHHHHH--HHH----hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--
Q 022896          111 HKDPVPKTR----T--ERLNQYQAEN--QKI----KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--  176 (290)
Q Consensus       111 ~~~~~p~~~----~--~~~~~~~~~~--~~~----~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--  176 (290)
                      ..|.+|+..    .  ..++......  ..+    ..+++++|||+|.+|+|+|..|....++.+|+++.+.+.+.+.  
T Consensus       190 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~  269 (463)
T 3s5w_A          190 GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADD  269 (463)
T ss_dssp             CEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCC
T ss_pred             CCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccC
Confidence            998887621    1  1111111111  111    1588999999999999999999987678999999998866431  


Q ss_pred             ------------------CChhHHHHHHHHHHh--------------------------CCcEEEeCceEeecccCCCce
Q 022896          177 ------------------IGPKAGDKTRDWLIS--------------------------KKVDVKLGERVNLDSVSEGSD  212 (290)
Q Consensus       177 ------------------~~~~~~~~~~~~~~~--------------------------~gi~~~~~~~v~~i~~~~~~~  212 (290)
                                        +.+.....+.+.+..                          .|++++.++.|++++.+++++
T Consensus       270 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~  349 (463)
T 3s5w_A          270 SPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGI  349 (463)
T ss_dssp             CHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEE
T ss_pred             CccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEE
Confidence                              111111112221111                          699999999999998877776


Q ss_pred             eEEcC---CCc--EEeccEEEEccCCCCC--chhhcccccccccCCCCcEEecCCccccC----CCCeEEeccccCccc
Q 022896          213 TYLTS---TGD--TINADCHFLCTGKPVG--SDWLKDTILKDSLDTHGMLMVDENLRVKG----QKNIFAIGDITDIRV  280 (290)
Q Consensus       213 ~v~~~---~g~--~~~~d~vv~a~G~~~~--~~~l~~~~~~~~~~~~g~~~v~~~~~~~~----~~~vfa~Gd~~~~~~  280 (290)
                      .+.+.   +|+  ++++|.||+|+|+.|+  .+++......  .   |.+.||+++++..    .|+||++|||.....
T Consensus       350 ~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~--~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g  423 (463)
T 3s5w_A          350 ELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEY--L---GDHEIGRDYRLQTDERCKVAIYAQGFSQASHG  423 (463)
T ss_dssp             EEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGG--B---C--CCCTTSBCCBCTTBCSEEEESSCCHHHHC
T ss_pred             EEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHH--h---CCcccCcccccccCCCCCCeEEEcCCCcccCC
Confidence            66654   665  4899999999999998  6777665432  1   7899999988743    466999999986444

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.97  E-value=9.5e-32  Score=230.53  Aligned_cols=254  Identities=17%  Similarity=0.127  Sum_probs=165.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ...+||+||||||+||++|++|++ |++|+|||+++.+++.+..-  ........+......+++.  ++++..+...  
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g--ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v--  195 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG--IPGFKLEKSVVERRVKLLADAGVIYHPNFEV--  195 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT--SCTTTSCHHHHHHHHHHHHHTTCEEETTCCB--
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec--CCCccCCHHHHHHHHHHHHHCCcEEEeCCEe--
Confidence            356899999999999999999986 99999999998887654321  0011111111112222221  2333332221  


Q ss_pred             ecceEEecCceEEeccEEEEccCCC-C---CCCCchHHHH---HHHHHHH-----H----------HHhcCCeEEEEcCc
Q 022896           88 TENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERL---NQYQAEN-----Q----------KIKSARSILIVGGG  145 (290)
Q Consensus        88 ~~~~v~~~~~~~~~~~~vi~a~G~~-~---~~p~~~~~~~---~~~~~~~-----~----------~~~~~~~v~iiG~g  145 (290)
                      . ..+.+++. ...||+|++|+|+. |   .+|+.....+   ..+....     .          ....+++|+|||+|
T Consensus       196 ~-~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG  273 (456)
T 2vdc_G          196 G-RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG  273 (456)
T ss_dssp             T-TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSS
T ss_pred             c-cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCC
Confidence            1 12233332 35799999999996 3   3454221111   1111100     0          01357899999999


Q ss_pred             hhHHHHHHHHhhhCCCC-eEEEEecCccc-cccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC--ceeEE---c--
Q 022896          146 PTGVELAGEIAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYL---T--  216 (290)
Q Consensus       146 ~~~~~~a~~l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~--~~~v~---~--  216 (290)
                      .+|+|+|..+...  +. +|+++.+.+.. ++....    . .+.+++.||++++++.++++..++.  ++.+.   .  
T Consensus       274 ~~a~d~A~~~~r~--Ga~~Vtiv~r~~~~~~p~~~~----e-~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~  346 (456)
T 2vdc_G          274 DTAMDCVRTAIRQ--GATSVKCLYRRDRKNMPGSQR----E-VAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGV  346 (456)
T ss_dssp             HHHHHHHHHHHHT--TCSEEEEECSSCSTTCSSCHH----H-HHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEE
T ss_pred             hhHHHHHHHHHHc--CCCEEEEEEeCCccCCCCCHH----H-HHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecc
Confidence            9999999988753  54 69999988764 332221    2 3457788999999998877754211  12221   0  


Q ss_pred             --C---------CC--cEEeccEEEEccCCCCCch--hhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCccc
Q 022896          217 --S---------TG--DTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       217 --~---------~g--~~~~~d~vv~a~G~~~~~~--~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~  280 (290)
                        .         +|  .++++|.||+|+|+.|+..  ++...++  +++++|++.+|++ +++ +.|+|||+|||+..+.
T Consensus       347 ~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl--~~~~~G~i~vd~~~~~T-s~~~VfA~GD~~~g~~  423 (456)
T 2vdc_G          347 ADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPEL--KVTRWGTLLVDHRTKMT-NMDGVFAAGDIVRGAS  423 (456)
T ss_dssp             EEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTS--CBCTTSSBCCCTTTCBC-SSTTEEECGGGGSSCC
T ss_pred             cCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCe--eECCCCCEEECCCCCcC-CCCCEEEeccccCCch
Confidence              1         23  4789999999999999765  6776555  5688999999997 886 7999999999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=5e-31  Score=220.70  Aligned_cols=252  Identities=17%  Similarity=0.195  Sum_probs=161.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC----------Ccccc-----------cccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE----------PSFGK-----------RSVINH   70 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~----------~~~~~-----------~~~~~~   70 (290)
                      ++||+|||||++|+++|++|++ |++|+|||+++.+++.|........          +.+..           .....+
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL   82 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence            3899999999999999999975 9999999999988877653211100          00000           000001


Q ss_pred             ccccc--cceEE-eeeeeeeecc----e-EEecCceEEeccEEEEccCC--CCC---CCCchH---HHHHHHHHHHHHHh
Q 022896           71 TDYLV--NGRIV-ASPAINITEN----E-VLTAEGRRVVYDYLVIATGH--KDP---VPKTRT---ERLNQYQAENQKIK  134 (290)
Q Consensus        71 ~~~~~--~~~~~-~~~v~~~~~~----~-v~~~~~~~~~~~~vi~a~G~--~~~---~p~~~~---~~~~~~~~~~~~~~  134 (290)
                      .++..  +..+. ...|+.++..    . +.+.++ .+.||+||+|+|.  .|.   +|+...   ..++..........
T Consensus        83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  161 (357)
T 4a9w_A           83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPF  161 (357)
T ss_dssp             HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGG
T ss_pred             HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhhc
Confidence            11111  22333 4567777654    2 666666 8999999999995  344   343111   11111111111223


Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-ccccccC--ChhHHHHHHHHHH---------------------
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLEFI--GPKAGDKTRDWLI---------------------  190 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~-~~~~~~~--~~~~~~~~~~~~~---------------------  190 (290)
                      .+++++|+|+|.+++|+|..|...  + +++++.+. +.+.+..  ...+...+.+.+.                     
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~--~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTV--A-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMV  238 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTT--S-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhh--C-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccC
Confidence            679999999999999999999873  4 69999887 3443321  2222222222222                     


Q ss_pred             -------hCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC--c
Q 022896          191 -------SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN--L  261 (290)
Q Consensus       191 -------~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~--~  261 (290)
                             +.|+ +.....++++..    ..+.+.+|+++++|.|++|+|+.|+.++++..++  . +++|++.+|++  +
T Consensus       239 ~~~~~~~~~g~-i~~~~~v~~~~~----~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl--~-~~~G~i~vd~~~l~  310 (357)
T 4a9w_A          239 PPVLDARARGV-LAAVPPPARFSP----TGMQWADGTERAFDAVIWCTGFRPALSHLKGLDL--V-TPQGQVEVDGSGLR  310 (357)
T ss_dssp             HHHHHHHHTTC-CCEECCCSEEET----TEEECTTSCEEECSEEEECCCBCCCCGGGTTTTC--B-CTTSCBCBCTTSCB
T ss_pred             hhHHHHHhcCc-eEEecCcceEeC----CeeEECCCCEecCCEEEECCCcCCCCcccCcccc--c-CCCCCccccCCccc
Confidence                   2333 333444433332    2377889999999999999999999999988776  3 78899999999  5


Q ss_pred             cccCCCCeEEec--cccC
Q 022896          262 RVKGQKNIFAIG--DITD  277 (290)
Q Consensus       262 ~~~~~~~vfa~G--d~~~  277 (290)
                      ++ +.|+|||+|  ||++
T Consensus       311 ~t-~~~~vya~Gd~d~~~  327 (357)
T 4a9w_A          311 AL-AVPSVWLLGYGDWNG  327 (357)
T ss_dssp             BS-SCTTEEECSSCGGGS
T ss_pred             CC-CCCCeEEeccccccc
Confidence            65 899999999  6665

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.96  E-value=7.1e-30  Score=219.23  Aligned_cols=255  Identities=15%  Similarity=0.101  Sum_probs=166.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc--------CCcEEEEcCCCCcccchhhhhhhcCCcc--ccccccccccccc--cceEE
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF--------SADVTLIDPKEYFEITWASLRAMVEPSF--GKRSVINHTDYLV--NGRIV   80 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~--------g~~v~vie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~   80 (290)
                      .+||+|||||++|+++|.+|.+        +.+|+|||+.+.+++.|.   ....+..  ..+....+.+++.  +++++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~---~gv~p~~~~~~~~~~~~~~~~~~~~v~~~   79 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR---SGVAPDHPKIKSISKQFEKTAEDPRFRFF   79 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH---HTSCTTCTGGGGGHHHHHHHHTSTTEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc---cccCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            4899999999999999999965        899999999987765552   1221211  1122222222222  33444


Q ss_pred             eeeeeeeecceEEecCceEEeccEEEEccCCC-C---CCCCchHHHHHHHHHHHH----------HH--hcCCeEEEEcC
Q 022896           81 ASPAINITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQ----------KI--KSARSILIVGG  144 (290)
Q Consensus        81 ~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~-~---~~p~~~~~~~~~~~~~~~----------~~--~~~~~v~iiG~  144 (290)
                      .+ + .+. ..+.++++ .+.||+||+|||+. +   .+|+.....+.+...+..          ..  ..+++++|||+
T Consensus        80 ~~-v-~v~-~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~  155 (456)
T 1lqt_A           80 GN-V-VVG-EHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGN  155 (456)
T ss_dssp             ES-C-CBT-TTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECC
T ss_pred             ee-E-EEC-CEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECC
Confidence            33 2 132 23444444 47899999999997 3   355532111111111111          11  14789999999


Q ss_pred             chhHHHHHHHHhhh-------------------CCCCeEEEEecCccccccCCh-------------------hH-----
Q 022896          145 GPTGVELAGEIAVD-------------------FPEKKVTLVHKGSRLLEFIGP-------------------KA-----  181 (290)
Q Consensus       145 g~~~~~~a~~l~~~-------------------~~~~~v~~~~~~~~~~~~~~~-------------------~~-----  181 (290)
                      |++|+|+|..|...                   ....+|+++.+...+...+.+                   ++     
T Consensus       156 G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~  235 (456)
T 1lqt_A          156 GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITD  235 (456)
T ss_dssp             SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCH
T ss_pred             CHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchh
Confidence            99999999998852                   123599999998765432221                   11     


Q ss_pred             -------------HHHHHHHHHh------CCcEEEeCceEeecccCCCceeEEcC----------------CC--cEEec
Q 022896          182 -------------GDKTRDWLIS------KKVDVKLGERVNLDSVSEGSDTYLTS----------------TG--DTINA  224 (290)
Q Consensus       182 -------------~~~~~~~~~~------~gi~~~~~~~v~~i~~~~~~~~v~~~----------------~g--~~~~~  224 (290)
                                   .+.+.+.+++      +||++++++.+.++..++....+.+.                +|  ++++|
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~  315 (456)
T 1lqt_A          236 EDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPA  315 (456)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEEC
T ss_pred             hhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEc
Confidence                         2334444555      79999999999888765322223222                34  46899


Q ss_pred             cEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          225 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       225 d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      |.|++|+|++|+. +   .++  +++++|++.+|+++|.++.|+|||+|||+..|.
T Consensus       316 d~vi~a~G~~p~~-l---~gl--~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~  365 (456)
T 1lqt_A          316 QLVVRSVGYRGVP-T---PGL--PFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPT  365 (456)
T ss_dssp             SEEEECSCEECCC-C---TTS--CCBTTTTBCCEETTEETTCSSEEECTHHHHCSC
T ss_pred             CEEEEccccccCC-C---CCC--cccCCCCeeECCCCcCCCCCCEEEEeccCCCCc
Confidence            9999999999976 3   233  567889999999999558999999999987654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.96  E-value=4.1e-29  Score=215.45  Aligned_cols=244  Identities=15%  Similarity=0.184  Sum_probs=159.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhc----cCCc---EEEEcCCCCcccchhhhhhh----------------cC----------
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ----FSAD---VTLIDPKEYFEITWASLRAM----------------VE----------   59 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~----~g~~---v~vie~~~~~~~~~~~~~~~----------------~~----------   59 (290)
                      .+||+|||||++|+++|.+|+    +|.+   |+|||+++.+|+.|......                ..          
T Consensus         2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~   81 (464)
T 2xve_A            2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEF   81 (464)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCB
T ss_pred             CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhccc
Confidence            379999999999999999995    4899   99999998888777532100                00          


Q ss_pred             Ccccc--------cccc-------ccccccc--cce--E-Eeeeeeeeecc------eEEecC---c--eEEeccEEEEc
Q 022896           60 PSFGK--------RSVI-------NHTDYLV--NGR--I-VASPAINITEN------EVLTAE---G--RRVVYDYLVIA  108 (290)
Q Consensus        60 ~~~~~--------~~~~-------~~~~~~~--~~~--~-~~~~v~~~~~~------~v~~~~---~--~~~~~~~vi~a  108 (290)
                      ..++.        ..+.       .+.++..  +..  + .+..|..++..      .|.+.+   +  .++.||+||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA  161 (464)
T 2xve_A           82 ADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC  161 (464)
T ss_dssp             TTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence            00000        0000       0111111  111  2 35667776532      355543   3  57899999999


Q ss_pred             cC--CCCCCCCchH------HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChh
Q 022896          109 TG--HKDPVPKTRT------ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK  180 (290)
Q Consensus       109 ~G--~~~~~p~~~~------~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~  180 (290)
                      +|  +.|.+|...+      ..++...........+++|+|||+|.+|+|+|..|..  .+.+|+++.+.+.++....  
T Consensus       162 tG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~--~g~~V~li~~~~~~~~~~~--  237 (464)
T 2xve_A          162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYK--YGAKKLISCYRTAPMGYKW--  237 (464)
T ss_dssp             CCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHH--TTCSEEEEECSSCCCCCCC--
T ss_pred             CCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHH--hCCeEEEEEECCCCCCCCC--
Confidence            99  5666554111      1111111111122368999999999999999999997  4889999998877644311  


Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-  259 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-  259 (290)
                                ..||+++  ..|+++.  ++  .+.+.+|+++++|.||+|+|++|+.+++... +.+.+++++++ ++. 
T Consensus       238 ----------~~~V~~~--~~V~~i~--~~--~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~-~gl~~~~~~~v-~~~~  299 (464)
T 2xve_A          238 ----------PENWDER--PNLVRVD--TE--NAYFADGSSEKVDAIILCTGYIHHFPFLNDD-LRLVTNNRLWP-LNLY  299 (464)
T ss_dssp             ----------CTTEEEC--SCEEEEC--SS--EEEETTSCEEECSEEEECCCBCCCCTTBCTT-TCCCCCSSSCC-SSEE
T ss_pred             ----------CCceEEc--CCeEEEe--CC--EEEECCCCEEeCCEEEECCCCCCCCCCcCcc-cccccCCCccc-cccc
Confidence                      2478877  6676664  23  4677899999999999999999999998852 23344555455 332 


Q ss_pred             -C-ccccCCCCeEEeccccCcc
Q 022896          260 -N-LRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       260 -~-~~~~~~~~vfa~Gd~~~~~  279 (290)
                       + +++ +.|+||++||++...
T Consensus       300 ~~~~~t-~~p~i~aiGd~~~~~  320 (464)
T 2xve_A          300 KGVVWE-DNPKFFYIGMQDQWY  320 (464)
T ss_dssp             TTTEES-SSTTEEECSCSCCSS
T ss_pred             ceEecC-CCCCEEEEeCccccc
Confidence             2 344 799999999998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.96  E-value=2.8e-30  Score=232.83  Aligned_cols=249  Identities=16%  Similarity=0.136  Sum_probs=170.3

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc---cceEEeeeee
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV---NGRIVASPAI   85 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~   85 (290)
                      ....+||+|||||++||++|++|++ |++|+|||+++.+++.+..................+...+.   ++++..    
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~----  463 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYR----  463 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEES----
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEE----
Confidence            3456899999999999999999986 99999999999888776543222111111111111111111   122221    


Q ss_pred             eeecceEEecCceEEeccEEEEccCCCC-----------CCCCchHHHHHHHHHHHH-HHhcCCeEEEEc--CchhHHHH
Q 022896           86 NITENEVLTAEGRRVVYDYLVIATGHKD-----------PVPKTRTERLNQYQAENQ-KIKSARSILIVG--GGPTGVEL  151 (290)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~vi~a~G~~~-----------~~p~~~~~~~~~~~~~~~-~~~~~~~v~iiG--~g~~~~~~  151 (290)
                         ...+...++.++.||++|+|||+.|           .+|+.....+.+...... ....+++++|+|  +|.+|+|+
T Consensus       464 ---~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~  540 (690)
T 3k30_A          464 ---ESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVV  540 (690)
T ss_dssp             ---SCCCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHH
T ss_pred             ---CCeecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHH
Confidence               1223344455678999999999873           233322111111222222 334578899999  89999999


Q ss_pred             HHHHhhhCCCCeEEEEecCccccccCC-hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE---cCCCcEEeccEE
Q 022896          152 AGEIAVDFPEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TSTGDTINADCH  227 (290)
Q Consensus       152 a~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~---~~~g~~~~~d~v  227 (290)
                      |..|..  .+.+|+++++.+.+..... +.....+.+.+++.||+++.++.|++++.+  +..+.   +.+++++++|.|
T Consensus       541 A~~L~~--~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~v~~~~~~~~~~i~aD~V  616 (690)
T 3k30_A          541 AELLAQ--KGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAG--GVTVRDTYASIERELECDAV  616 (690)
T ss_dssp             HHHHHH--TTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETT--EEEEEETTTCCEEEEECSEE
T ss_pred             HHHHHh--CCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECC--eEEEEEccCCeEEEEECCEE
Confidence            999997  4889999999887766543 456778889999999999999999888753  33343   234568999999


Q ss_pred             EEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          228 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       228 v~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      |+|+|..|+..++......      +.       ++ +.|+||++|||+..+...+
T Consensus       617 V~A~G~~p~~~l~~~l~~~------~~-------~t-~~~~VyaiGD~~~~~~~~~  658 (690)
T 3k30_A          617 VMVTARLPREELYLDLVAR------RD-------AG-EIASVRGIGDAWAPGTIAA  658 (690)
T ss_dssp             EEESCEEECCHHHHHHHHH------HH-------HT-SCSEEEECGGGTSCBCHHH
T ss_pred             EECCCCCCChHHHHHHhhh------hc-------cc-CCCCEEEEeCCCchhhHHH
Confidence            9999999998877664321      11       44 7999999999998765543

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.96  E-value=4.6e-29  Score=214.45  Aligned_cols=256  Identities=15%  Similarity=0.093  Sum_probs=163.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhhhhhhcCCccc--cccccccccccc--cceEEeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYLV--NGRIVASPAI   85 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~v~   85 (290)
                      .+||+|||||++|+++|.+|++ +  .+|+|||+++.+++.|.   ....+.+.  ......+.+++.  ++.+..+.. 
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~---~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~-   81 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR---FGVAPDHPEVKNVINTFTQTARSDRCAFYGNVE-   81 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH---HTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCC-
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee---cccCCCCccHHHHHHHHHHHHHhCCcEEEeeeE-
Confidence            5899999999999999999976 6  99999999987765442   11212221  111122222222  233332211 


Q ss_pred             eeecceEEecCceEEeccEEEEccCCCC----CCCCchHHHHHHHHHHHHH------------HhcCCeEEEEcCchhHH
Q 022896           86 NITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLNQYQAENQK------------IKSARSILIVGGGPTGV  149 (290)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~~~~~~~~~------------~~~~~~v~iiG~g~~~~  149 (290)
                       +. ..+.+.+. .+.||+||+|||+.+    .+|+.....+..+..+...            ...+++++|||+|++|+
T Consensus        82 -v~-~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~  158 (460)
T 1cjc_A           82 -VG-RDVTVQEL-QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVAL  158 (460)
T ss_dssp             -BT-TTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHH
T ss_pred             -Ee-eEEEeccc-eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHH
Confidence             11 22333332 468999999999983    3454322222222222111            11478999999999999


Q ss_pred             HHHHHHhhh------------------CCCC-eEEEEecCccccccCC-------------------hh-----------
Q 022896          150 ELAGEIAVD------------------FPEK-KVTLVHKGSRLLEFIG-------------------PK-----------  180 (290)
Q Consensus       150 ~~a~~l~~~------------------~~~~-~v~~~~~~~~~~~~~~-------------------~~-----------  180 (290)
                      |+|..|...                  ..+. +|+++.+.+.....+.                   .+           
T Consensus       159 e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~  238 (460)
T 1cjc_A          159 DVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEA  238 (460)
T ss_dssp             HHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTS
T ss_pred             HHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhc
Confidence            999998830                  1344 7999998875411110                   00           


Q ss_pred             ------HHHHHHHHHHh--------------CCcEEEeCceEeecccCC-C-ce-eEEcC---------------CC--c
Q 022896          181 ------AGDKTRDWLIS--------------KKVDVKLGERVNLDSVSE-G-SD-TYLTS---------------TG--D  220 (290)
Q Consensus       181 ------~~~~~~~~~~~--------------~gi~~~~~~~v~~i~~~~-~-~~-~v~~~---------------~g--~  220 (290)
                            +.+.+.+.+++              +||++++++.+.++..++ + .+ .+.+.               +|  +
T Consensus       239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~  318 (460)
T 1cjc_A          239 ARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVE  318 (460)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceE
Confidence                  23334445555              889999999998887553 3 21 22221               34  5


Q ss_pred             EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          221 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       221 ~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      ++++|.|++|+|++|+. +   .++ .+++++|++.+|+++|++..|+|||+|||+..+.
T Consensus       319 ~i~~d~Vi~a~G~~p~~-l---~gl-~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~  373 (460)
T 1cjc_A          319 DLPCGLVLSSIGYKSRP-I---DPS-VPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT  373 (460)
T ss_dssp             EEECSEEEECCCEECCC-C---CTT-SCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT
T ss_pred             EEEcCEEEECCCCCCCC-C---CCC-cccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC
Confidence            79999999999999976 3   232 0457788999999999844799999999997553

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.96  E-value=1.1e-29  Score=229.80  Aligned_cols=248  Identities=19%  Similarity=0.163  Sum_probs=164.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc-cceEE---eeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV-NGRIV---ASPAI   85 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~v~   85 (290)
                      ...+||+|||||++||++|++|++ |++|+|||+++.+++.+.......  ...  .+....+++. ....+   ...+.
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~p--g~~--~~~~~~~~~~~~i~~~~~~~~~~v  462 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALP--GLG--EWSYHRDYRETQITKLLKKNKESQ  462 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTST--TCG--GGHHHHHHHHHHHHHHHHHSTTCE
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCC--ChH--HHHHHHHHHHHHHHHhhcccCCce
Confidence            446899999999999999999975 999999999998887665432211  110  0111111110 00000   00112


Q ss_pred             eeec-ceEEecCceEEeccEEEEccCCCC-----------CCCCch--HHHHHHHHHHHH-HHhcCCeEEEEc--CchhH
Q 022896           86 NITE-NEVLTAEGRRVVYDYLVIATGHKD-----------PVPKTR--TERLNQYQAENQ-KIKSARSILIVG--GGPTG  148 (290)
Q Consensus        86 ~~~~-~~v~~~~~~~~~~~~vi~a~G~~~-----------~~p~~~--~~~~~~~~~~~~-~~~~~~~v~iiG--~g~~~  148 (290)
                      .+.. ..+..+++..+.||+||+|||+.|           .+|+..  ...+.+....+. ....+++++|||  +|.+|
T Consensus       463 ~i~~~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g  542 (729)
T 1o94_A          463 LALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMA  542 (729)
T ss_dssp             EECSCCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHH
T ss_pred             EEEeCeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchH
Confidence            2222 234444555688999999999972           234422  111222222222 233578999999  89999


Q ss_pred             HHHHHHHhhhCCCCeEEEEecCcccccc--CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE--cCCC-cE--
Q 022896          149 VELAGEIAVDFPEKKVTLVHKGSRLLEF--IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL--TSTG-DT--  221 (290)
Q Consensus       149 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~--~~~g-~~--  221 (290)
                      +|+|..|..  .+.+|+++++.+ +...  +... ...+.+.+++.||+++.++.++++..+  +..+.  ..++ ++  
T Consensus       543 ~e~A~~l~~--~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~~~~~~~~~~~~~~  616 (729)
T 1o94_A          543 PSLAEKLAT--AGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPG--RMEIYNIWGDGSKRTY  616 (729)
T ss_dssp             HHHHHHHHH--TTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEETT--EEEEEETTCSCSCCCC
T ss_pred             HHHHHHHHH--cCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEECC--eEEEEEecCCceEEec
Confidence            999999987  488999999987 5432  2222 466778889999999999999887643  33333  1232 22  


Q ss_pred             ----------------EeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          222 ----------------INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       222 ----------------~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                                      +++|.||+|+|..|+..++.....          .+|+++++ ++|+|||+|||+...
T Consensus       617 ~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~----------~vd~~~~t-~~~~VyAiGD~~~~~  679 (729)
T 1o94_A          617 RGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA----------RESEWAEN-DIKGIYLIGDAEAPR  679 (729)
T ss_dssp             CCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH----------TGGGTGGG-TCCEEEECGGGTSCC
T ss_pred             ccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh----------hccccccc-CCCCeEEEeCccchh
Confidence                            899999999999999887764321          15778887 799999999999743

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.96  E-value=6.9e-29  Score=231.74  Aligned_cols=253  Identities=17%  Similarity=0.203  Sum_probs=165.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCCcccchhhhhhhcCCcc--ccccccccccccc--cceEEeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEYFEITWASLRAMVEPSF--GKRSVINHTDYLV--NGRIVASPAI   85 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~v~   85 (290)
                      ..+||+||||||+|+++|.+|++ |+ +|+|||+.+.+|+.+..   .+ +.+  .........+++.  ++++..+...
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~---~i-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  261 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS---EI-PQFRLPYDVVNFEIELMKDLGVKIICGKSL  261 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH---TS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCB
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccc---cC-CcccCCHHHHHHHHHHHHHCCcEEEcccEe
Confidence            36899999999999999999976 98 79999999887765421   11 111  1111111111211  3444444332


Q ss_pred             eeecceEEecCceEEeccEEEEccCCC-CCCC----Cch-HHHH---HHHHHHHHH-------------HhcCCeEEEEc
Q 022896           86 NITENEVLTAEGRRVVYDYLVIATGHK-DPVP----KTR-TERL---NQYQAENQK-------------IKSARSILIVG  143 (290)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~vi~a~G~~-~~~p----~~~-~~~~---~~~~~~~~~-------------~~~~~~v~iiG  143 (290)
                      .  ...+.++++..+.||+||+|||+. |..+    +.. ...+   .++......             ...+++++|||
T Consensus       262 ~--~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIG  339 (1025)
T 1gte_A          262 S--ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG  339 (1025)
T ss_dssp             S--TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEEC
T ss_pred             c--cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEEC
Confidence            2  123444455557899999999994 5533    211 1111   122111111             12357999999


Q ss_pred             CchhHHHHHHHHhhhCCC-CeEEEEecCcc-ccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEc----
Q 022896          144 GGPTGVELAGEIAVDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT----  216 (290)
Q Consensus       144 ~g~~~~~~a~~l~~~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~----  216 (290)
                      +|.+|+|+|..+..  .+ .+|+++++.+. .++.+++++     +.+++.||+++.++.++++..+++.+ .+.+    
T Consensus       340 gG~~g~e~A~~~~~--~G~~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~  412 (1025)
T 1gte_A          340 AGDTAFDCATSALR--CGARRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE  412 (1025)
T ss_dssp             SSHHHHHHHHHHHH--TTCSEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CChHHHHHHHHHHH--cCCCEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeE
Confidence            99999999999886  35 48999998873 333333222     46778899999999988876544432 2222    


Q ss_pred             --CCC---------cEEeccEEEEccCCCC-Cchhhcc-cccccccCCCCcEEecC-CccccCCCCeEEeccccCccc
Q 022896          217 --STG---------DTINADCHFLCTGKPV-GSDWLKD-TILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       217 --~~g---------~~~~~d~vv~a~G~~~-~~~~l~~-~~~~~~~~~~g~~~v~~-~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                        .+|         .++++|.||+|+|..| +..++.. .++  +++++|++.||+ +++| +.|+|||+|||++.+.
T Consensus       413 ~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl--~~~~~G~I~vd~~~~~T-s~~~VfA~GD~~~~~~  487 (1025)
T 1gte_A          413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPI--KFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMAN  487 (1025)
T ss_dssp             ECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTS--CBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCC
T ss_pred             EcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCc--eECCCCCEEECCCCCcc-CCCCEEEeCCCCCCch
Confidence              122         3689999999999975 4556554 244  567889999997 7887 7999999999998654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.95  E-value=1.8e-28  Score=227.48  Aligned_cols=250  Identities=16%  Similarity=0.164  Sum_probs=167.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh-hhcCCcccccccccccc-c--cccceEE-eeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR-AMVEPSFGKRSVINHTD-Y--LVNGRIV-ASPAIN   86 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~v~~   86 (290)
                      ++||+||||||+|++||.+|++ |++|+|||+++.+++.+.... ..+......+......+ +  ..++++. ...|..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            5899999999999999999976 999999999988876655210 11111100111111111 1  1133333 234544


Q ss_pred             eecc-------------eEEe------cCceEEeccEEEEccCCCCC---CCCchHHHH---HHHHHHHHH--HhcCCeE
Q 022896           87 ITEN-------------EVLT------AEGRRVVYDYLVIATGHKDP---VPKTRTERL---NQYQAENQK--IKSARSI  139 (290)
Q Consensus        87 ~~~~-------------~v~~------~~~~~~~~~~vi~a~G~~~~---~p~~~~~~~---~~~~~~~~~--~~~~~~v  139 (290)
                      ++..             .+..      .++.++.||++|+|||+.|.   +|+.....+   ..+......  ...++++
T Consensus       208 i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~v  287 (965)
T 2gag_A          208 SYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARI  287 (965)
T ss_dssp             EETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSE
T ss_pred             eecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeE
Confidence            4432             1111      12347899999999999754   343222111   122222221  1246899


Q ss_pred             EEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEEcC
Q 022896          140 LIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLTS  217 (290)
Q Consensus       140 ~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~~~  217 (290)
                      +|+|+|++++|+|..|...  +.+|+++++.+.+..    .     .+.+++.||+++.++.++++..+ ++. ..+.+.
T Consensus       288 vViGgG~~g~E~A~~L~~~--G~~Vtvv~~~~~~~~----~-----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~  356 (965)
T 2gag_A          288 AVATTNDSAYELVRELAAT--GGVVAVIDARSSISA----A-----AAQAVADGVQVISGSVVVDTEADENGELSAIVVA  356 (965)
T ss_dssp             EEEESSTTHHHHHHHHGGG--TCCSEEEESCSSCCH----H-----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEcCCHHHHHHHHHHHHc--CCcEEEEECCCccch----h-----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEE
Confidence            9999999999999999874  778999999887542    1     56688999999999999988763 332 234333


Q ss_pred             C-------C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCcc----ccCCCCeEEeccccCcccc
Q 022896          218 T-------G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLR----VKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       218 ~-------g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~----~~~~~~vfa~Gd~~~~~~~  281 (290)
                      +       |  +++++|.|++|+|..|+.+++...        .+.+.+|++++    .++.|+|||+|||++.+..
T Consensus       357 ~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~--------~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l  425 (965)
T 2gag_A          357 ELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR--------QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDT  425 (965)
T ss_dssp             EECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT--------TCCEEEETTTTEEEECSCCTTEEECGGGGTCCSH
T ss_pred             eccccCCCCceEEEEcCEEEECCCcCcChHHHHhC--------CCcEEEcCcccccccCCCCCCEEEEEecCCchhH
Confidence            2       4  579999999999999998887653        35788888776    2479999999999987643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.95  E-value=3.6e-28  Score=209.19  Aligned_cols=245  Identities=17%  Similarity=0.236  Sum_probs=158.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCCCcccchhhhhhhc---------------------------CC-
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLRAMV---------------------------EP-   60 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~~~~~~~~~~~~~~---------------------------~~-   60 (290)
                      +.+||+|||||++||++|.+|++ |.  +|+|||+++..++.|.......                           .. 
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            36899999999999999999976 88  9999999987776664321000                           00 


Q ss_pred             ----------------cc--ccc--------cc-cccccccc--cc-eEEeeeeeeeecc----eEEecC---ce---EE
Q 022896           61 ----------------SF--GKR--------SV-INHTDYLV--NG-RIVASPAINITEN----EVLTAE---GR---RV  100 (290)
Q Consensus        61 ----------------~~--~~~--------~~-~~~~~~~~--~~-~~~~~~v~~~~~~----~v~~~~---~~---~~  100 (290)
                                      .+  ...        .+ ..+.++..  .. -.++..|+.++..    .+.+.+   |.   .+
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~  164 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKD  164 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEE
Confidence                            00  000        00 00001111  11 2245677776543    355544   55   78


Q ss_pred             eccEEEEccCC--CCCCCCchH-HHH--------HHHHHHHH-HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCe-EEEE
Q 022896          101 VYDYLVIATGH--KDPVPKTRT-ERL--------NQYQAENQ-KIKSARSILIVGGGPTGVELAGEIAVDFPEKK-VTLV  167 (290)
Q Consensus       101 ~~~~vi~a~G~--~~~~p~~~~-~~~--------~~~~~~~~-~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~-v~~~  167 (290)
                      .||+||+|+|.  .|.+|...+ ...        .+...... ....+++|+|||+|.+|+|+|..|..  .+.+ |+++
T Consensus       165 ~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~--~~~~~V~l~  242 (447)
T 2gv8_A          165 IFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTP--VAKHPIYQS  242 (447)
T ss_dssp             EESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEE
T ss_pred             EeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHH--HhCCcEEEE
Confidence            99999999998  566554221 110        00011111 12368999999999999999999986  3677 9999


Q ss_pred             ecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcE-EeccEEEEccCCCCCchh-----hc
Q 022896          168 HKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT-INADCHFLCTGKPVGSDW-----LK  241 (290)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~-----l~  241 (290)
                      .+.+.+               ++..||++  ...|+++..+++  .+.+.+|++ +++|.||+|+|++|+.++     ++
T Consensus       243 ~r~~~~---------------l~~~~i~~--~~~v~~~~~~~~--~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~  303 (447)
T 2gv8_A          243 LLGGGD---------------IQNESLQQ--VPEITKFDPTTR--EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLK  303 (447)
T ss_dssp             CTTCCS---------------CBCSSEEE--ECCEEEEETTTT--EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCC
T ss_pred             eCCCCc---------------CCCCCeEE--ecCeEEEecCCC--EEEECCCCEeccCCEEEECCCCCcCCCCCcccccc
Confidence            988754               33457764  466766654333  567778876 689999999999999999     76


Q ss_pred             ccccccccCCCCcEEecCCccc--cCCCCeEEeccccCcc
Q 022896          242 DTILKDSLDTHGMLMVDENLRV--KGQKNIFAIGDITDIR  279 (290)
Q Consensus       242 ~~~~~~~~~~~g~~~v~~~~~~--~~~~~vfa~Gd~~~~~  279 (290)
                      ..+..+  ..++.+.++.+.+.  ++.|+||++||+....
T Consensus       304 ~~~~~i--~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~  341 (447)
T 2gv8_A          304 SPETKL--IDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV  341 (447)
T ss_dssp             STTTCC--CSSSSSCCSEETTTEETTCTTEEESSCCBSSC
T ss_pred             cccCce--ecCCCcccccccccccCCCCcEEEEecccccc
Confidence            543222  23455555544331  4799999999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.95  E-value=3.3e-28  Score=211.40  Aligned_cols=230  Identities=17%  Similarity=0.140  Sum_probs=159.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccchhhhhhhc-C-Cccccccccccccc-cccceE-Eeeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMV-E-PSFGKRSVINHTDY-LVNGRI-VASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~   88 (290)
                      ++||+|||||++|+++|++|++.++|+|||+++.+++.+....... . +....+....+.+. ..++++ ....+..++
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i~  187 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGVF  187 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTTCCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCCE
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            5799999999999999999964499999999998877654322110 0 00011111111111 123333 245555555


Q ss_pred             cc--eE--Ee-cCce--EEeccEEEEccCCCCCCC---CchHH---HHHHHHHHHHH--HhcCCeEEEEcCchhHHHHHH
Q 022896           89 EN--EV--LT-AEGR--RVVYDYLVIATGHKDPVP---KTRTE---RLNQYQAENQK--IKSARSILIVGGGPTGVELAG  153 (290)
Q Consensus        89 ~~--~v--~~-~~~~--~~~~~~vi~a~G~~~~~p---~~~~~---~~~~~~~~~~~--~~~~~~v~iiG~g~~~~~~a~  153 (290)
                      ..  .+  .. .++.  .+.||++++|||+.|..|   +....   ....+......  ...+++++|+|+|..+++   
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle---  264 (493)
T 1y56_A          188 DKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI---  264 (493)
T ss_dssp             ECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH---
T ss_pred             cCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH---
Confidence            43  11  11 3343  689999999999985543   32211   11222222222  234689999999999877   


Q ss_pred             HHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          154 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       154 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                                                       +.+++.|++++.++.+++++.+++...+.+.+|+++++|.||+|+|.
T Consensus       265 ---------------------------------~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~  311 (493)
T 1y56_A          265 ---------------------------------QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGR  311 (493)
T ss_dssp             ---------------------------------HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCE
T ss_pred             ---------------------------------HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCc
Confidence                                             45677899999999999888665545667788889999999999999


Q ss_pred             CCCchhhcccccccccCCCCcEE-ecCCccccCCCCeEEeccccCccc
Q 022896          234 PVGSDWLKDTILKDSLDTHGMLM-VDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       234 ~~~~~~l~~~~~~~~~~~~g~~~-v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +|+.+++...++.+.++++|++. +|++++  +.|+||++|||++.+.
T Consensus       312 ~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~--s~~~vya~GD~~~~~~  357 (493)
T 1y56_A          312 RPDINPITQAGGKLRFRRGYYSPVLDEYHR--IKDGIYVAGSAVSIKP  357 (493)
T ss_dssp             EECCHHHHHTTCCEEEETTEEEECCCTTSE--EETTEEECSTTTCCCC
T ss_pred             CcCchHHHhcCCCccccCCceeeccccccC--cCCCEEEEeccCCccC
Confidence            99999999988876667789888 899988  6899999999998653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.94  E-value=2.2e-27  Score=207.67  Aligned_cols=158  Identities=20%  Similarity=0.187  Sum_probs=103.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-c-CCcEEEEcCCCCcccchhhhhhh----------cCCccc----------c------
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASLRAM----------VEPSFG----------K------   64 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~~~~~~~~~~~----------~~~~~~----------~------   64 (290)
                      ++||+|||||++|+++|.+|+ + |.+|+|||+++.+|+.|.....-          ....+.          .      
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            589999999999999999998 6 99999999999888776532100          000000          0      


Q ss_pred             ccccccccccc--c---ceEEeeeeeeeecc------eEEecCceEEeccEEEEccCC--CCCCC---Cch---HHHHHH
Q 022896           65 RSVINHTDYLV--N---GRIVASPAINITEN------EVLTAEGRRVVYDYLVIATGH--KDPVP---KTR---TERLNQ  125 (290)
Q Consensus        65 ~~~~~~~~~~~--~---~~~~~~~v~~~~~~------~v~~~~~~~~~~~~vi~a~G~--~~~~p---~~~---~~~~~~  125 (290)
                      +....+.....  +   .-.....|+.++..      .+.+.+|.++.||+||+|+|.  .|..|   +..   ...++.
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~  167 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHT  167 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEEEe
Confidence            00000000110  1   12345566666532      477788888999999999994  55544   321   111222


Q ss_pred             HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      ..........+++|+|||+|.+|+|+|..|..  .+.+|+++.+.+.
T Consensus       168 ~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          168 AAWPEGKSLAGRRVGVIGTGSTGQQVITSLAP--EVEHLTVFVRTPQ  212 (540)
T ss_dssp             GGCCSSCCCTTSEEEEECCSHHHHHHHHHHTT--TCSEEEEEESSCC
T ss_pred             ecCCCccccccceEEEECCCchHHHHHHHHHh--hCCEEEEEECCCC
Confidence            21111222467999999999999999999986  4899999999887

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.94  E-value=2.1e-26  Score=207.13  Aligned_cols=238  Identities=16%  Similarity=0.187  Sum_probs=157.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~   87 (290)
                      ...+||+|||||++|+++|.+|++ |++|+|||+++.+++.+.............+....+..++.  ++++..+..   
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~---  447 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT---  447 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC---
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcE---
Confidence            346899999999999999999976 99999999999888776533221111110111111111111  233332221   


Q ss_pred             ecceEEecCceEE-eccEEEEccCCCCCCCC---chHHHHHHHHHHHH-HHhcCCeEEEEcCchhHHHHHHHHhhhCC--
Q 022896           88 TENEVLTAEGRRV-VYDYLVIATGHKDPVPK---TRTERLNQYQAENQ-KIKSARSILIVGGGPTGVELAGEIAVDFP--  160 (290)
Q Consensus        88 ~~~~v~~~~~~~~-~~~~vi~a~G~~~~~p~---~~~~~~~~~~~~~~-~~~~~~~v~iiG~g~~~~~~a~~l~~~~~--  160 (290)
                          +..   ..+ .||+||+|||+.|..|+   .....+.++..... ....+++++|||+|.+|+|+|..|.....  
T Consensus       448 ----v~~---~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~v  520 (671)
T 1ps9_A          448 ----VTA---DQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGEST  520 (671)
T ss_dssp             ----CCS---SSSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ----ecH---HHhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCc
Confidence                111   123 89999999999866554   22111112222222 22357999999999999999999875310  


Q ss_pred             ---------------------------------CCeEEEEecCcccc-ccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          161 ---------------------------------EKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       161 ---------------------------------~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                                                       ..+++++.+.+... ..+++.....+.+.+++.||+++.++.+++++
T Consensus       521 tv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  600 (671)
T 1ps9_A          521 SQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID  600 (671)
T ss_dssp             GGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE
T ss_pred             ccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEe
Confidence                                             14677777765443 23556677778888999999999999998776


Q ss_pred             cCCCceeEEcCCC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          207 VSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       207 ~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .  +++.+. .+|  +++++|.||+|+|..|+..++....                  . ..++||++|||+....
T Consensus       601 ~--~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~------------------~-~g~~v~aiGD~~~~~~  654 (671)
T 1ps9_A          601 D--DGLHVV-INGETQVLAVDNVVICAGQEPNRALAQPLI------------------D-SGKTVHLIGGCDVAME  654 (671)
T ss_dssp             T--TEEEEE-ETTEEEEECCSEEEECCCEEECCTTHHHHH------------------T-TTCCEEECGGGTCCSS
T ss_pred             C--CeEEEe-cCCeEEEEeCCEEEECCCccccHHHHHHHH------------------h-cCCCEEEECCcCccCc
Confidence            3  344444 566  5799999999999999988776421                  1 2479999999998764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.93  E-value=6.6e-26  Score=198.49  Aligned_cols=160  Identities=19%  Similarity=0.193  Sum_probs=102.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh--------------cCC------cccccc--cc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM--------------VEP------SFGKRS--VI   68 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~--------------~~~------~~~~~~--~~   68 (290)
                      .++||+|||||++|+++|.+|++ |.+|+|||+++.+|+.|.....-              ..+      .+....  ..
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~   87 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP   87 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence            46899999999999999999976 99999999999888776421110              000      000000  00


Q ss_pred             cccccc----cc-----ceEEeeeeeeeecc------eEEecCceEEeccEEEEccC--CCCCCC---Cch---HHHHHH
Q 022896           69 NHTDYL----VN-----GRIVASPAINITEN------EVLTAEGRRVVYDYLVIATG--HKDPVP---KTR---TERLNQ  125 (290)
Q Consensus        69 ~~~~~~----~~-----~~~~~~~v~~~~~~------~v~~~~~~~~~~~~vi~a~G--~~~~~p---~~~---~~~~~~  125 (290)
                      ....++    ..     .-.+...|+.++.+      .|.+++|.++.||+||+|+|  +.|..|   +..   ...++.
T Consensus        88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~  167 (545)
T 3uox_A           88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHS  167 (545)
T ss_dssp             HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEc
Confidence            000111    00     11234566666532      57788888999999999999  565544   421   111222


Q ss_pred             HHHHHH-------HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          126 YQAENQ-------KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       126 ~~~~~~-------~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ......       ....+++|+|||+|.+|+|+|..|..  .+.+|+++.+.+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~--~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          168 SRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAE--TAKELYVFQRTPNW  220 (545)
T ss_dssp             GGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTT--TBSEEEEEESSCCC
T ss_pred             ccccccccccccccccCCCeEEEECCCccHHHHHHHHHh--hCCEEEEEEcCCCc
Confidence            211111       12357999999999999999999996  48899999998863

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.91  E-value=4e-25  Score=193.70  Aligned_cols=160  Identities=18%  Similarity=0.249  Sum_probs=104.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh-----hc-----CCcccc---------ccc---c
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-----MV-----EPSFGK---------RSV---I   68 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~-----~~-----~~~~~~---------~~~---~   68 (290)
                      .++||+|||||++|+++|.+|++ |.+|+|||+++.+|+.|.....     ..     ...+..         ..+   .
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~   99 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQP   99 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHH
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHH
Confidence            45899999999999999999976 9999999999988877652211     00     000000         000   0


Q ss_pred             cccccc----c--c---ceEEeeeeeeeecc------eEEecCceEEeccEEEEccC--CCCCCC---Cch---HHHHHH
Q 022896           69 NHTDYL----V--N---GRIVASPAINITEN------EVLTAEGRRVVYDYLVIATG--HKDPVP---KTR---TERLNQ  125 (290)
Q Consensus        69 ~~~~~~----~--~---~~~~~~~v~~~~~~------~v~~~~~~~~~~~~vi~a~G--~~~~~p---~~~---~~~~~~  125 (290)
                      ...+++    .  +   .-.+...|+.++.+      .+.+.+|.++.||+||+|+|  +.|..|   +..   ...++.
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~  179 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHT  179 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEe
Confidence            000111    0  1   11234566666432      57778888899999999999  555544   421   111222


Q ss_pred             HHHH-HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          126 YQAE-NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       126 ~~~~-~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      .... ......+++|+|||+|.+|+|+|..|...  +.+|+++.|.+.+
T Consensus       180 ~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~--~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          180 ARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQ--AEQLFVFQRSANY  226 (549)
T ss_dssp             GGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSCCC
T ss_pred             ccccccccccCCCEEEEECCCchHHHHHHHHHhh--CCEEEEEECCCCc
Confidence            1111 01123689999999999999999999974  7899999998863

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.89  E-value=1.7e-23  Score=183.88  Aligned_cols=160  Identities=18%  Similarity=0.261  Sum_probs=101.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh----------cCCcccc---------cccc---
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM----------VEPSFGK---------RSVI---   68 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~----------~~~~~~~---------~~~~---   68 (290)
                      .++||+|||||++|+++|.+|++ |.+|+|||+++.+|+.|.....-          ....+..         ..+.   
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            35899999999999999999976 99999999999888776421100          0000000         0000   


Q ss_pred             ccccccc--------cce-EEeeeeeeeecc------eEEecCceEEeccEEEEccCC--CCCCCCch------HHHHHH
Q 022896           69 NHTDYLV--------NGR-IVASPAINITEN------EVLTAEGRRVVYDYLVIATGH--KDPVPKTR------TERLNQ  125 (290)
Q Consensus        69 ~~~~~~~--------~~~-~~~~~v~~~~~~------~v~~~~~~~~~~~~vi~a~G~--~~~~p~~~------~~~~~~  125 (290)
                      .+.+++.        ... .....|..++.+      .+.+.+|.++.+|+||+|+|.  .|..|...      +..++.
T Consensus        95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~hs  174 (542)
T 1w4x_A           95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHT  174 (542)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEC
Confidence            0011110        111 234556665432      466777878999999999995  45554311      111222


Q ss_pred             HHHHHH-HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          126 YQAENQ-KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       126 ~~~~~~-~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ...... ....+++++|||+|.+|++++..+...  +.+|+++.+.+.+
T Consensus       175 ~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~--~~~vtv~~r~~~~  221 (542)
T 1w4x_A          175 GNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRTPHF  221 (542)
T ss_dssp             GGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSCCC
T ss_pred             CCCCCchhccCCCEEEEECCCccHHHHHHHHhhc--CceEEEEEcCCcc
Confidence            111101 113579999999999999999999874  7899999987755

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.88  E-value=6.2e-21  Score=165.84  Aligned_cols=179  Identities=13%  Similarity=0.171  Sum_probs=110.2

Q ss_pred             eEEeccEEEEccCCCCCCCC---chHHHHHHHHHH------HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEe
Q 022896           98 RRVVYDYLVIATGHKDPVPK---TRTERLNQYQAE------NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVH  168 (290)
Q Consensus        98 ~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~~~~------~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~  168 (290)
                      .++.++.||+|+|..|.+|+   ..+..+|+....      ......+|+|+|||+|.||+|++..|.+...+.+|+++.
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~  278 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIM  278 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred             EEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEe
Confidence            46889999999999888886   222222222211      112247899999999999999999998766788999999


Q ss_pred             cCcccccc---------CChhHHH-------------------------------HHHHHH-----H-----hCCcEEEe
Q 022896          169 KGSRLLEF---------IGPKAGD-------------------------------KTRDWL-----I-----SKKVDVKL  198 (290)
Q Consensus       169 ~~~~~~~~---------~~~~~~~-------------------------------~~~~~~-----~-----~~gi~~~~  198 (290)
                      |++.+.+.         +.+....                               .+.+.+     .     .....+..
T Consensus       279 R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~  358 (501)
T 4b63_A          279 RDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILP  358 (501)
T ss_dssp             SSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEEC
T ss_pred             CCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecC
Confidence            98754321         1111111                               111111     1     01224556


Q ss_pred             CceEeecccCCCc--e------------eEEcCCCcEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEecCCccc
Q 022896          199 GERVNLDSVSEGS--D------------TYLTSTGDTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDENLRV  263 (290)
Q Consensus       199 ~~~v~~i~~~~~~--~------------~v~~~~g~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~~~~~~  263 (290)
                      +..+..+......  +            .+.+.+|+++++|.||+|||++++. ++|....-.+..+.+|.+.|+++++.
T Consensus       359 ~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~  438 (501)
T 4b63_A          359 ERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRV  438 (501)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBB
T ss_pred             CcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEE
Confidence            6666555433221  2            2345678899999999999998864 33333222335577788889887654


Q ss_pred             c-------CCCCeEEecccc
Q 022896          264 K-------GQKNIFAIGDIT  276 (290)
Q Consensus       264 ~-------~~~~vfa~Gd~~  276 (290)
                      .       ..++||+.|-+-
T Consensus       439 ~~~~~~~~~~~~i~~qg~~~  458 (501)
T 4b63_A          439 EMDPSKVSSEAGIWLQGCNE  458 (501)
T ss_dssp             CCCTTTBCTTCEEEECSCCH
T ss_pred             eecCCccCCCceEEecCCCc
Confidence            1       246799998553

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.82  E-value=1.3e-19  Score=136.58  Aligned_cols=133  Identities=22%  Similarity=0.206  Sum_probs=112.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cC-----ChhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FI-----GPKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      +++|||+|++|+++|..|.+  .+.+|+++++.+..+.         .+     .+++.+.+.+.+++.|++++.+ +++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~   79 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVK   79 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCC
T ss_pred             eEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEE
Confidence            68999999999999999997  4889999998875442         12     3578888999999999999999 998


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      +++.+++.+.+.+.+| ++++|.||+|+|..|+  +++..++  +++ +|++.||+++|+ +.|+|||+|||+..+.
T Consensus        80 ~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~--~~~-~g~i~vd~~~~t-~~~~i~a~GD~~~~~~  149 (180)
T 2ywl_A           80 GVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT--LPSLLGL--TRR-GAYIDTDEGGRT-SYPRVYAAGVARGKVP  149 (180)
T ss_dssp             EEEECSSSEEEECSSC-EEEEEEEEECCTTCCH--HHHHHTC--CEE-TTEECCCTTCBC-SSTTEEECGGGGTCCS
T ss_pred             EEEEcCCEEEEEECCC-EEEECEEEECCCCCCC--ccccCCC--Ccc-CceEEeCCCCCc-CCCCEEEeecccCcch
Confidence            8887777788888888 8999999999999973  4555555  456 889999999998 7999999999999764

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.57  E-value=4.9e-16  Score=134.10  Aligned_cols=159  Identities=13%  Similarity=0.085  Sum_probs=91.0

Q ss_pred             ceEEeccEEEEccCCCCCCCC-------chHHHHHHHHHHHHHHh-----cCC-eEEEEcCchhHHHHHHHHhhhCCCCe
Q 022896           97 GRRVVYDYLVIATGHKDPVPK-------TRTERLNQYQAENQKIK-----SAR-SILIVGGGPTGVELAGEIAVDFPEKK  163 (290)
Q Consensus        97 ~~~~~~~~vi~a~G~~~~~p~-------~~~~~~~~~~~~~~~~~-----~~~-~v~iiG~g~~~~~~a~~l~~~~~~~~  163 (290)
                      +.++.++.+|+|||..+..+.       .....+.-.......+.     ... .++++|++  +.+++..+..  .+..
T Consensus       160 ~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~--~G~~  235 (472)
T 2e5v_A          160 GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRG--EGAQ  235 (472)
T ss_dssp             EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHH--TTCE
T ss_pred             CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcC--CceE
Confidence            345789999999999843322       22223222211100011     112 23344554  5556665654  3556


Q ss_pred             EEEEecCccccccCChhH--------HHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEe-ccEEEEccCCC
Q 022896          164 VTLVHKGSRLLEFIGPKA--------GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN-ADCHFLCTGKP  234 (290)
Q Consensus       164 v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~-~d~vv~a~G~~  234 (290)
                      + +..++++|+..+++..        ...+.+.+++.|. ++.+...  +  ++    +    .+.++ .+.++++.|..
T Consensus       236 ~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~--~~----~----~~~~~~~~~~~~~~G~d  301 (472)
T 2e5v_A          236 I-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I--ED----F----ERKFPVVAKYLARHGHN  301 (472)
T ss_dssp             E-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C--TT----H----HHHCHHHHHHHHHTTCC
T ss_pred             E-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h--HH----H----HHHhHHHHHHHHHhCcC
Confidence            6 6777888876555433        5566666766653 3322210  1  00    0    01233 46778888998


Q ss_pred             CCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccC
Q 022896          235 VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  277 (290)
Q Consensus       235 ~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~  277 (290)
                      |+ .+++....  .....|.|.||.++|+ +.|+|||+|||+.
T Consensus       302 p~-~~i~v~p~--~~~~~GGI~vd~~~~t-~ipgLyAaGd~a~  340 (472)
T 2e5v_A          302 YK-VKIPIFPA--AHFVDGGIRVNIRGES-NIVNLYAIGEVSD  340 (472)
T ss_dssp             TT-SCEECEEE--EEEESCEEECCTTCBC-SSBTEEECGGGEE
T ss_pred             cc-cceEeehh--hceeCCCeEECCCCcc-ccCCEEecchhcc
Confidence            87 55543221  1234689999999998 7999999999987

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.55  E-value=8.7e-16  Score=131.51  Aligned_cols=97  Identities=12%  Similarity=0.025  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccC--------CCCCchhhcccccccccCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--------KPVGSDWLKDTILKDSLDT  251 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--------~~~~~~~l~~~~~~~~~~~  251 (290)
                      .+...+...+++.| +++++++|++++.+++++.+.+.+|+++.+|.||+|+|        +.|+.+......+.. ...
T Consensus       205 g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~-~~~  282 (431)
T 3k7m_X          205 GSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE-GHG  282 (431)
T ss_dssp             CTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH-CCC
T ss_pred             cHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh-CCC
Confidence            44555566666677 99999999999988888889888888899999999999        667665544433322 123


Q ss_pred             CCcEEecCCccccCCCCeEEeccccCcc
Q 022896          252 HGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       252 ~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      ...+.|+..+++ ..+++|+.||+....
T Consensus       283 ~~~~kv~~~~~~-~~~~i~~~~d~~~~~  309 (431)
T 3k7m_X          283 GQGLKILIHVRG-AEAGIECVGDGIFPT  309 (431)
T ss_dssp             CCEEEEEEEEES-CCTTEEEEBSSSSSE
T ss_pred             cceEEEEEEECC-CCcCceEcCCCCEEE
Confidence            345888988888 579999999985543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.49  E-value=6.1e-18  Score=139.49  Aligned_cols=40  Identities=18%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc--c-CCcEEEEcCCCCcccch
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ--F-SADVTLIDPKEYFEITW   51 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~--~-g~~v~vie~~~~~~~~~   51 (290)
                      ..+||+||||||+||+||++|+  + |++|+|||+++.+|+..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~  106 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceE
Confidence            4689999999999999999995  3 99999999999887654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.48  E-value=4.3e-13  Score=113.68  Aligned_cols=57  Identities=14%  Similarity=0.066  Sum_probs=50.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      ..+...+.+.+++.|++++.++.|+++..+++++.+.+.+| ++.+|.||+|+|..+.
T Consensus       132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~  188 (417)
T 3v76_A          132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSI  188 (417)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccC
Confidence            36788888999999999999999999988777788888887 8999999999998763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.47  E-value=2.5e-13  Score=114.19  Aligned_cols=61  Identities=8%  Similarity=-0.096  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      ..+...+.+.+++.|++++.+++|++++.+++++.+.+.+| ++.+|.||+|+|.+. ..++.
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s-~~l~~  214 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC-DAIAG  214 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH-HHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH-HHHHH
Confidence            36888899999999999999999999988777788888887 899999999999874 33443

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.39  E-value=3.3e-12  Score=107.44  Aligned_cols=63  Identities=10%  Similarity=-0.106  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT  243 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~  243 (290)
                      ..+...+.+.+++.|++++.+++|+++..+++.+.+.+.+| ++.+|.||+|+|... ..++...
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s-~~l~~~~  226 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS-GMFFKQL  226 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT-HHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH-HHHHHhc
Confidence            46888899999999999999999999988777777777777 899999999999874 3454443

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.37  E-value=1.5e-11  Score=103.65  Aligned_cols=80  Identities=20%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             CCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          161 EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       161 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      .....++.+......  ...+...+.+.+++.|++++.+++|++++.+++++.+.+.+| ++.+|.||+|+|.+. ..++
T Consensus       134 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~-~~l~  209 (389)
T 2gf3_A          134 ENYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN-SKLL  209 (389)
T ss_dssp             TTEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH-HHHG
T ss_pred             CCceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH-HHHh
Confidence            345666665543322  247888899999999999999999999988777777777666 799999999999875 3454


Q ss_pred             cccc
Q 022896          241 KDTI  244 (290)
Q Consensus       241 ~~~~  244 (290)
                      ...+
T Consensus       210 ~~~g  213 (389)
T 2gf3_A          210 SKLN  213 (389)
T ss_dssp             GGGT
T ss_pred             hhhc
Confidence            4433

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.37  E-value=8.9e-12  Score=104.83  Aligned_cols=56  Identities=11%  Similarity=-0.147  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.|++++.+++|++++.+++.+. +.+.+| ++.+|.||+|+|.+.
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            36788888999999999999999999988777765 777777 799999999999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.36  E-value=2e-11  Score=110.23  Aligned_cols=63  Identities=6%  Similarity=0.044  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc-EEeccEEEEccCCCCCchhhcc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      ..+...+.+.+++.|++++.+++|+++..+++++.+.+.+|+ ++.+|.||+|+|... ..++..
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s-~~l~~~  475 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL-PEWEQT  475 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT-TCSTTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch-hccccc
Confidence            478888999999999999999999999988888888888887 899999999999874 334433

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.36  E-value=1.3e-12  Score=109.39  Aligned_cols=64  Identities=6%  Similarity=-0.123  Sum_probs=53.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCC--cEEeccEEEEccCCCCCchhhccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG--DTINADCHFLCTGKPVGSDWLKDT  243 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g--~~~~~d~vv~a~G~~~~~~~l~~~  243 (290)
                      ..+...+.+.+++.|++++.+++|++++.++++ +.+.+.+|  .++.+|.||+|+|.+. ..++...
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s-~~l~~~~  216 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA-PGLARRI  216 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH-HHHHHTE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch-HHHHHHh
Confidence            378888999999999999999999999887665 77888887  3899999999999884 4565554

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.36  E-value=1.4e-12  Score=102.09  Aligned_cols=97  Identities=21%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-----------------ccccC-------ChhHHHHHHHHHHhC
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-----------------LLEFI-------GPKAGDKTRDWLISK  192 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~-----------------~~~~~-------~~~~~~~~~~~~~~~  192 (290)
                      .+++|||+|++|+++|..|.+  .+.+|+++++...                 +...+       ...+...+.+.+++.
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~   81 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGL   81 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcC
Confidence            579999999999999999997  4889999998721                 11111       125667788888887


Q ss_pred             -CcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCC
Q 022896          193 -KVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       193 -gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                       |++++ ++.++++..+++. ..+.+.+|+++.+|.||+|+|..++
T Consensus        82 ~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           82 RPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             TTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             CCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence             99999 5689888776665 3577788888999999999999554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.34  E-value=4.3e-11  Score=107.98  Aligned_cols=63  Identities=6%  Similarity=0.021  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      ..+...+.+.+++.|++++.+++|+++..+++++.+.+.+|.++.+|.||+|+|... ..++..
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s-~~l~~~  479 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI-SRFSQT  479 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG-GCSTTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch-hccccc
Confidence            478888999999999999999999999988888888888888899999999999874 334433

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.31  E-value=1e-11  Score=108.32  Aligned_cols=56  Identities=9%  Similarity=-0.081  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+++.|++|+++++|++|..+++++ .|++.+|+++.+|.||++++...
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            688889999999999999999999999888874 48899999999999999887653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.29  E-value=2.5e-11  Score=104.04  Aligned_cols=57  Identities=21%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCc---eEeecccCCCcee-EEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGE---RVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~---~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.|++++.++   .|+++..+++.+. +.+.+|+++.+|.||+|+|.+.
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            3678889999999999999999   9999988777766 8888888899999999999874

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.28  E-value=5.3e-11  Score=102.14  Aligned_cols=57  Identities=14%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.|++++.++.|+++..+++. +.+.+.+|+++.+|.||+|+|..+
T Consensus       134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            367788888999999999999999999876665 778888887899999999999876

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.28  E-value=8.4e-11  Score=99.63  Aligned_cols=55  Identities=16%  Similarity=-0.067  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.+++|+++..+++. ..+.+.+| ++.+|.||+|+|.+.
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            67888899999999999999999999876665 56777777 799999999999874

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.28  E-value=6.2e-11  Score=100.09  Aligned_cols=58  Identities=7%  Similarity=-0.095  Sum_probs=48.8

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccC----CCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVS----EGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~----~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      ...+...+.+.+++.|++++.++.++++..+    ++.+.+.+.+| ++.+|.||+|+|..+.
T Consensus       108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccC
Confidence            3477888889999999999999999988765    45577777766 7999999999999874

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.26  E-value=7.2e-12  Score=106.84  Aligned_cols=61  Identities=13%  Similarity=0.092  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      ..+.+.+.+.+++.|++++++++|++++.+++++ + ..+|+++.+|.||+|+|.+....++.
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll~  249 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVKLIG  249 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHHhcC
Confidence            4788899999999999999999999999887777 5 45677899999999999875545554

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.25  E-value=1e-11  Score=108.20  Aligned_cols=67  Identities=18%  Similarity=0.257  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCc--hhhccccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGS--DWLKDTIL  245 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~--~~l~~~~~  245 (290)
                      ..+...+.+.+++.|+++++++.|+++..+++. ..+.+.+|+++.+|.||+|+|.++..  .++...++
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi  289 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGV  289 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCC
Confidence            467788888899999999999999999887765 45788889899999999999998742  34444443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.24  E-value=4.2e-11  Score=101.29  Aligned_cols=61  Identities=18%  Similarity=0.091  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      .+...+.+.+++.|++++.+++|++++.+++++.+.+.+| ++.+|.||+|+|.+. ..++..
T Consensus       154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s-~~l~~~  214 (397)
T 2oln_A          154 GTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYT-NDLLEP  214 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGH-HHHHGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcCh-HHHhhh
Confidence            5777888888999999999999999987776777777665 799999999999874 334443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.22  E-value=3.3e-11  Score=102.70  Aligned_cols=56  Identities=18%  Similarity=0.046  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCc--EEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++.|++++.++++  +.+.+.+|+  ++.+|.||.|+|..+
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            67777888888889999999999999877665  455667887  699999999999875

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.22  E-value=4.9e-11  Score=100.95  Aligned_cols=57  Identities=9%  Similarity=0.032  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCce--eEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD--TYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~--~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++. |++++.++++++++.+++++  .+.+.+|+++.+|.||.|+|..+.
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASY  167 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChH
Confidence            6778888888887 99999999999998887777  888888989999999999998764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.21  E-value=4.5e-11  Score=101.99  Aligned_cols=62  Identities=11%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      ..+.+.+.+.+++.|++++++++|+++..+++++. +.+ +|+++.+|.||+|+|.+....++.
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHHHhcC
Confidence            36888899999999999999999999988777654 555 477899999999999765445543

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.21  E-value=1.3e-10  Score=97.34  Aligned_cols=55  Identities=16%  Similarity=0.042  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.+++|++++.+++++.+.+.+| ++.+|.||+|+|.+.
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence            6788888899999999999999999988777777887777 599999999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.20  E-value=4.9e-10  Score=94.14  Aligned_cols=54  Identities=15%  Similarity=0.097  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++.|++++.++.+++++. + + .+.+.+|+++.+|.||.|+|..+.
T Consensus       108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A          108 HLHDALVNRARALGVDISVNSEAVAADP-V-G-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEET-T-T-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C-EEEECCCCEEEcCEEEECCCccHH
Confidence            6788888889899999999999998877 3 3 788888889999999999998764

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.20  E-value=3.5e-11  Score=105.21  Aligned_cols=53  Identities=11%  Similarity=-0.052  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      .+.+.+.+.+++.|++++.++.|+++..+++.  +++.+|+++.||.||.++...
T Consensus       223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~  275 (513)
T 4gde_A          223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVD  275 (513)
T ss_dssp             HHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHH
T ss_pred             HHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHH
Confidence            56777777788889999999999999876654  567789999999999987643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.19  E-value=2.8e-10  Score=96.17  Aligned_cols=55  Identities=9%  Similarity=-0.095  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+  .|++++.++.+++++.+++++.+.+.+|+++.+|.||.|.|..+.
T Consensus       100 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          100 SIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             HHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             HHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            3444455444  589999999999998888888898899989999999999998754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.18  E-value=2.6e-10  Score=96.73  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+...+.+.+++  ++++++++|++++.+++++.+.+.+|+++.+|.||.|.|.....
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~v  183 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL  183 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSS
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHH
Confidence            577777777766  89999999999998888888999999999999999999987543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.17  E-value=1e-11  Score=108.70  Aligned_cols=46  Identities=13%  Similarity=-0.088  Sum_probs=39.8

Q ss_pred             HhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          190 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       190 ~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      +..|++++.++.|++++.+++++.+.+.+|+++.+|.||++++...
T Consensus       223 ~~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          223 DLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             HHcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            3347899999999999988888888888998999999999998653

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.13  E-value=7e-10  Score=102.33  Aligned_cols=62  Identities=21%  Similarity=0.021  Sum_probs=50.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      ..+...+.+.+++.|++++.+++|++++.+++.+ .+.+.+| ++.+|.||+|+|.+. ..+...
T Consensus       151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s-~~l~~~  213 (830)
T 1pj5_A          151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG-AKIGAM  213 (830)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH-HHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch-HHHHHH
Confidence            3688889999999999999999999998766653 5677777 799999999999875 344443

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.13  E-value=1.8e-10  Score=95.44  Aligned_cols=42  Identities=17%  Similarity=0.090  Sum_probs=37.9

Q ss_pred             CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          192 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       192 ~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .|+++++++.|++++.+++++.+.+.+|+++.+|.||+|++.
T Consensus       122 ~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          122 SGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             cCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            389999999999999888888898888887899999999974

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.12  E-value=8.4e-11  Score=88.13  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=62.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC--Ccc-ccccccccccccc--cceEEeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE--PSF-GKRSVINHTDYLV--NGRIVASPAIN   86 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~--~~~~~~~~v~~   86 (290)
                      ++|++|||||++|+.+|..|++ |.+|+|+|+++........+.....  ... ..+....+.+.+.  +++++...++.
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~~v~~   80 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKG   80 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeCEEEE
Confidence            3799999999999999999976 9999999998732211000000000  000 0111111112111  34555557777


Q ss_pred             eecc----eEEecCceEEeccEEEEccCCCC
Q 022896           87 ITEN----EVLTAEGRRVVYDYLVIATGHKD  113 (290)
Q Consensus        87 ~~~~----~v~~~~~~~~~~~~vi~a~G~~~  113 (290)
                      ++.+    .+.++++ ++.+|.+|+|+|..|
T Consensus        81 i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           81 VRDMGGVFEVETEEG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             EEECSSSEEEECSSC-EEEEEEEEECCTTCC
T ss_pred             EEEcCCEEEEEECCC-EEEECEEEECCCCCC
Confidence            7653    4666677 899999999999986

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.12  E-value=7e-11  Score=104.14  Aligned_cols=56  Identities=11%  Similarity=0.105  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc--CCC-cEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--STG-DTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~--~~g-~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.+++|+.++.+++++.+.+  .+| +++.+|.||.|.|..+
T Consensus       149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          149 RTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             HHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            6777888888888999999999999998888877776  678 6899999999999875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.12  E-value=7.2e-11  Score=101.47  Aligned_cols=63  Identities=19%  Similarity=0.084  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeeccc---------------CCCc-eeEEcCCCcEE--eccEEEEccCCCCCchhhc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSV---------------SEGS-DTYLTSTGDTI--NADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~---------------~~~~-~~v~~~~g~~~--~~d~vv~a~G~~~~~~~l~  241 (290)
                      .+...+.+.+++.|++++.+++|+++..               +++. ..+.+.+| ++  .+|.||+|+|.+. ..++.
T Consensus       182 ~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s-~~l~~  259 (448)
T 3axb_A          182 KVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS-NRLLN  259 (448)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH-HHHHG
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH-HHHHH
Confidence            7888899999999999999999999876               4444 35777777 68  9999999999874 34555


Q ss_pred             ccc
Q 022896          242 DTI  244 (290)
Q Consensus       242 ~~~  244 (290)
                      ..+
T Consensus       260 ~~g  262 (448)
T 3axb_A          260 PLG  262 (448)
T ss_dssp             GGT
T ss_pred             HcC
Confidence            433

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.11  E-value=2e-10  Score=96.84  Aligned_cols=56  Identities=11%  Similarity=-0.061  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE-E-cCCC--cEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-L-TSTG--DTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v-~-~~~g--~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++.++.+..+++.+.. . ..++  .++.+|.||.|.|..+
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence            56677788888899999999999888777665332 2 2233  3689999999999764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.11  E-value=1.2e-10  Score=90.98  Aligned_cols=101  Identities=18%  Similarity=0.047  Sum_probs=62.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh----------hhhcC-Cc--ccccccccccccc---c
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL----------RAMVE-PS--FGKRSVINHTDYL---V   75 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~----------~~~~~-~~--~~~~~~~~~~~~~---~   75 (290)
                      ++||+|||||++|+++|.+|++ |.+|+|||++....+.+...          ...+. ..  ........+.+.+   .
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~   82 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR   82 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCC
Confidence            5899999999999999999986 99999999983211111000          00000 00  0000011111111   2


Q ss_pred             cceEEeeeeeeeecc-----eEEecCceEEeccEEEEccCCCC
Q 022896           76 NGRIVASPAINITEN-----EVLTAEGRRVVYDYLVIATGHKD  113 (290)
Q Consensus        76 ~~~~~~~~v~~~~~~-----~v~~~~~~~~~~~~vi~a~G~~~  113 (290)
                      ++.++...++.+..+     .+.+.++.++.+|.||+|+|...
T Consensus        83 gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           83 PLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             TEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             CcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            455666777777543     35667777899999999999963

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.10  E-value=3.2e-11  Score=104.26  Aligned_cols=41  Identities=22%  Similarity=0.182  Sum_probs=37.2

Q ss_pred             cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          194 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       194 i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      ++++.++.|++++.+++++.+.+.+|+++.+|.||+|++..
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~  288 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHK  288 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHH
Confidence            79999999999998888888999999889999999999754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.08  E-value=5.8e-10  Score=96.55  Aligned_cols=55  Identities=18%  Similarity=0.061  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+++.|++++++++|++++.++++ +.+.+ ++.++.+|.||+|++...
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPASV  290 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHHH
Confidence            68888999999999999999999999887766 77766 455799999999998643

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.08  E-value=4.8e-10  Score=99.08  Aligned_cols=56  Identities=16%  Similarity=0.025  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccC-CCceeEEcC-CC--cEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTS-TG--DTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~~~v~~~-~g--~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++.|+++..+ ++.+.+.+. +|  .++.+|.||.|+|..+
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            67778888888999999999999998875 444667665 66  5799999999999875

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.07  E-value=1.2e-09  Score=95.03  Aligned_cols=56  Identities=11%  Similarity=0.184  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc---EEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD---TINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~---~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++++++++.+++++.+.+.++.   ++.+|.||.|.|..+
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            67788888888899999999999999888888888776664   799999999999875

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.07  E-value=1.6e-10  Score=101.58  Aligned_cols=56  Identities=11%  Similarity=-0.050  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCC----ceeEEcCCC---cEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG----SDTYLTSTG---DTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~----~~~v~~~~g---~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|+++++++++++++.+++    ++.+.+.++   .++.+|.||.|.|...
T Consensus       121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            6788888999999999999999999988877    777776665   6899999999999875

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.05  E-value=2e-10  Score=100.23  Aligned_cols=57  Identities=18%  Similarity=0.034  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc---eeEEcCCCc--EEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++.|++++.+++|+++..+++.   +.+...+|+  ++.+|.||.|+|....
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR  173 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH
Confidence            67778888888899999999999999887664   455566775  7999999999998753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.05  E-value=2.6e-10  Score=100.38  Aligned_cols=141  Identities=17%  Similarity=0.154  Sum_probs=79.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC-Ccccchh--------------hhhhhcC----------------
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE-YFEITWA--------------SLRAMVE----------------   59 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~-~~~~~~~--------------~~~~~~~----------------   59 (290)
                      ..+||+|||||++|++||+.|++ |.+|+|||++. .++....              .+.....                
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            36899999999999999999986 99999999974 2221000              0000000                


Q ss_pred             -----Cccc------c--cccccccccc---ccceEEeeeeeeeec--c---eEEecCceEEeccEEEEccCCCCCCCCc
Q 022896           60 -----PSFG------K--RSVINHTDYL---VNGRIVASPAINITE--N---EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (290)
Q Consensus        60 -----~~~~------~--~~~~~~~~~~---~~~~~~~~~v~~~~~--~---~v~~~~~~~~~~~~vi~a~G~~~~~p~~  118 (290)
                           +...      +  .....+.+.+   .++.++.+.|+.+..  .   .|.+.+|..+.++.||+|+|..+..+..
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEE
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCccc
Confidence                 0000      0  0000011111   245677788888743  2   2566778889999999999998543321


Q ss_pred             hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEe
Q 022896          119 RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVH  168 (290)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~  168 (290)
                      .+..  .+        ...+   +| +..+.+++..+..  .+.+++.+.
T Consensus       187 ~G~~--~~--------~~gr---iG-g~~a~eLA~~L~~--lG~~v~~~~  220 (651)
T 3ces_A          187 IGLD--NY--------SGGR---AG-DPPSIPLSRRLRE--LPLRVGRLK  220 (651)
T ss_dssp             CC---------------------------CCHHHHHHHT--TTCCEEEEC
T ss_pred             cCcc--cC--------CCCC---cc-chhhhHHHHHHHh--cCCeEEEec
Confidence            1110  11        1222   45 5677888888875  477777664

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.05  E-value=8.4e-10  Score=94.91  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcC---CCc--EEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTS---TGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~---~g~--~~~~d~vv~a~G~~~~  236 (290)
                      .+.+.+.+.+++.|++++.++.|+++..+++.+. +.+.   +|+  ++.+|.||.|+|..+.
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            5777888888889999999999999887666533 4332   665  7899999999998754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.05  E-value=7.2e-10  Score=89.25  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=92.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------C
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------I  177 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~  177 (290)
                      ..+++|||+|.+|+.+|..+.+ .++.+|+++++.+.+...                                      .
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~-~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  117 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  117 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             ccCEEEECccHHHHHHHHHHHH-cCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecC
Confidence            3589999999999999999986 238899999987654210                                      1


Q ss_pred             ChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEcC---------CC-----cEEeccEEEEccCCCCCch---
Q 022896          178 GPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---------TG-----DTINADCHFLCTGKPVGSD---  238 (290)
Q Consensus       178 ~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~~---------~g-----~~~~~d~vv~a~G~~~~~~---  238 (290)
                      ...+...+.+.+.+ .|++++.++.++++..+++.+ .+...         +|     .++.+|.||+|+|..+...   
T Consensus       118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            12455566666765 699999999999998765542 33321         22     4799999999999876532   


Q ss_pred             --hhcccccccccCCCCcEEecC-------CccccCCCCeEEeccccC
Q 022896          239 --WLKDTILKDSLDTHGMLMVDE-------NLRVKGQKNIFAIGDITD  277 (290)
Q Consensus       239 --~l~~~~~~~~~~~~g~~~v~~-------~~~~~~~~~vfa~Gd~~~  277 (290)
                        ++...++.....+...+.++.       +.++ ..|++|++|+++.
T Consensus       198 ~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~-~~p~i~a~G~~~~  244 (284)
T 1rp0_A          198 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE-VVPGMIVTGMEVA  244 (284)
T ss_dssp             HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEE-EETTEEECTHHHH
T ss_pred             HHHhhhccCCCCcCCcCCchhhhhhHHHhhcccc-ccCCEEEEeeehh
Confidence              221112111222233333332       2333 5799999999864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.04  E-value=1.5e-10  Score=92.94  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=35.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~   51 (290)
                      |.+||+||||||+||+||+.|++ |++|+||||++.+|+..
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~   41 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRM   41 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            35899999999999999999986 99999999999887554

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.02  E-value=1.2e-09  Score=95.04  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc---EEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD---TINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~---~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++++++++.+++++.+.+.++.   ++.+|.||.|.|...
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence            67788888888899999999999999888888777776664   799999999999875

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.02  E-value=9.2e-10  Score=96.93  Aligned_cols=63  Identities=13%  Similarity=-0.026  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcC---CC--cEEeccEEEEccCCCCCchhhcc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS---TG--DTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~---~g--~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                      ..+...+.+.+++.|++++.+++|+++..++++ ..+.+.   +|  .++.++.||.|+|.+. ..+...
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s-~~l~~~  238 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV-DTLREK  238 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH-HHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch-HHHHHh
Confidence            468888888899999999999999999887665 335443   34  3789999999999874 344443

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.01  E-value=2.6e-09  Score=90.12  Aligned_cols=58  Identities=9%  Similarity=-0.104  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCC-CceeEEc-CCCc--EEeccEEEEccCCCCCc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDTYLT-STGD--TINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~-~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~  237 (290)
                      .+...+.+.+.+.|++++.++.+++++.++ +.+.+.+ .+|+  ++.+|.||.|.|..+..
T Consensus       104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~v  165 (394)
T 1k0i_A          104 EVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGIS  165 (394)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCST
T ss_pred             HHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence            566677777888899999999999987754 4566766 6786  79999999999987643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.98  E-value=2.6e-09  Score=91.30  Aligned_cols=56  Identities=9%  Similarity=-0.107  Sum_probs=47.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeeccc-CCCc-eeEEcCCCcEEeccEEEEccCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGS-DTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~-~~~~-~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      .++.+.+.+.+++.|++++.+++|+++.. +++. ..|.+.+|+++.||.||.++++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            37899999999999999999999999987 4444 66788888899999999999988

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.97  E-value=7.1e-09  Score=87.80  Aligned_cols=55  Identities=15%  Similarity=0.117  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEe---------ecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVN---------LDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~---------~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.+++|+         ++..+++.+.+.+.+| ++.+|.||+|+|.+.
T Consensus       173 ~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          173 SLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence            688888899999999999999998         8877766666666666 799999999999874

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.96  E-value=7.8e-09  Score=91.46  Aligned_cols=57  Identities=16%  Similarity=0.109  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCC-Cc---eeEEcCCCc--EEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS---DTYLTSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~-~~---~~v~~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.|+++++++.++++..++ +.   +.+...+|+  ++.+|.||+|+|...
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            3677888899999999999999999998765 44   233333665  689999999999754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.95  E-value=9.7e-09  Score=89.37  Aligned_cols=57  Identities=18%  Similarity=0.057  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc---CCCc--EEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.|++++.+++|+++..+++.+.+.+   .+|+  ++.+|.||.|+|.+.
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            36888888999999999999999999987665555655   3565  789999999999875

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.94  E-value=1.1e-10  Score=103.96  Aligned_cols=61  Identities=13%  Similarity=0.099  Sum_probs=46.0

Q ss_pred             hCCcEEEeCceEeecccCCC--c-eeEEc---CCCc--EEeccEEEEccCCCCCchhhcccccccccCC
Q 022896          191 SKKVDVKLGERVNLDSVSEG--S-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDT  251 (290)
Q Consensus       191 ~~gi~~~~~~~v~~i~~~~~--~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~  251 (290)
                      +.|++++.++.|+++..+++  . ..|..   .+|+  ++.+|.||+|+|..+++.+|..++++.....
T Consensus       272 ~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~~l  340 (623)
T 3pl8_A          272 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRP  340 (623)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCCSSC
T ss_pred             CCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCccccc
Confidence            34899999999999987653  2 33332   3454  6889999999999999999988887655333

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.94  E-value=2e-08  Score=88.69  Aligned_cols=58  Identities=24%  Similarity=0.165  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCC-Cc-eeEE--cCCCc--EEeccEEEEccCCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS-DTYL--TSTGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~-~~-~~v~--~~~g~--~~~~d~vv~a~G~~~~  236 (290)
                      ..+...+.+.+++.|+++++++.++++..++ +. ..+.  ..+|+  ++.+|.||+|+|....
T Consensus       250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            3577888889999999999999999998766 54 2233  34675  6899999999997653

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.93  E-value=8.2e-09  Score=90.84  Aligned_cols=56  Identities=23%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHhC-CcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++. |++++.+ .|+++..++++  ..+.+.+|+++.+|.||.|+|..+.
T Consensus       195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          195 LVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            6788888889888 9999999 99888765544  6677888888999999999998653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.87  E-value=3.6e-08  Score=85.99  Aligned_cols=61  Identities=15%  Similarity=0.073  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEEcC-CCc--EEecc-EEEEccCCCC-Cchhh
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLTS-TGD--TINAD-CHFLCTGKPV-GSDWL  240 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~~~-~g~--~~~~d-~vv~a~G~~~-~~~~l  240 (290)
                      .+...+.+.+++.|+++++++.++++..+ ++. ..+... +++  ++.+| .||+|+|-.. +.+++
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~  270 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMI  270 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHH
Confidence            67888899999999999999999999877 343 334332 332  58896 9999999655 33443

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.87  E-value=3.4e-09  Score=93.10  Aligned_cols=34  Identities=32%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+||+|||||++|++||+.|++ |.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            35899999999999999999986 99999999974

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.87  E-value=6.4e-09  Score=88.24  Aligned_cols=56  Identities=13%  Similarity=0.027  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHh-CC-cEEEeCceEeecccCCCceeEEcCC---C--cEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~-~g-i~~~~~~~v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++ .| ++++.++.+++++. ++++.+.+.+   |  +++.+|.||.|.|..+.
T Consensus       108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccch
Confidence            567777777766 35 68999999999987 6667776654   6  47899999999998754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.86  E-value=3.9e-09  Score=84.96  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~   48 (290)
                      .++||+|||||++|+++|++|++  |.+|+|||+++..+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~g   76 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   76 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence            45899999999999999999964  89999999998765

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.85  E-value=5.9e-08  Score=85.66  Aligned_cols=62  Identities=8%  Similarity=-0.151  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcC---CCc--EEeccEEEEccCCCCCchhhc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS---TGD--TINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~---~g~--~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      ..+...+.+.+++.|++++.+++|+++..+++. ..+...   +|+  ++.+|.||+|+|.+. ..++.
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws-~~l~~  255 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV-DKVRN  255 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH-HHHHT
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH-HHHHH
Confidence            467777888889999999999999999876654 334421   343  699999999999874 34443

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.83  E-value=1.8e-07  Score=82.71  Aligned_cols=57  Identities=19%  Similarity=0.204  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCC-Cc-eeEEc--CCCc--EEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS-DTYLT--STGD--TINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~-~~-~~v~~--~~g~--~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++.|+++++++.++++..++ +. ..+..  .+|+  ++.+|.||+|+|..+.
T Consensus       256 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          256 HVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            677888889999999999999999987665 44 23433  3664  6899999999996653

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.82  E-value=4.1e-09  Score=92.81  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...+||+|||||++|++||+.|++ |.+|+|+|++.
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            346999999999999999999986 99999999984

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.82  E-value=2.7e-08  Score=82.52  Aligned_cols=96  Identities=11%  Similarity=-0.020  Sum_probs=79.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------C-----------ChhHHHH
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------I-----------GPKAGDK  184 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------~-----------~~~~~~~  184 (290)
                      .+++|||+|..|+.+|..|.++  +.+|+++++.+.+...                     +           ...+...
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRS--GLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAY   81 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHS--SCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHH
Confidence            4799999999999999999974  8899999987653110                     0           0467778


Q ss_pred             HHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCCcEEeccEEEEccCCCC
Q 022896          185 TRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       185 ~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      +.+.+++.|++++.++.|++++.+++.+. +.+.+| ++.+|.+|+|+|..+
T Consensus        82 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           82 LAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence            88888999999999999999988887788 888887 899999999999643

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.82  E-value=8.4e-09  Score=87.15  Aligned_cols=35  Identities=37%  Similarity=0.549  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +.+||+|||||++|+++|..|++ |.+|+|||+++.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            35899999999999999999986 999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.80  E-value=2.8e-08  Score=81.27  Aligned_cols=99  Identities=18%  Similarity=0.048  Sum_probs=78.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC--cccc--------ccC----ChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG--SRLL--------EFI----GPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~--~~~~--------~~~----~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      .+++|||+|..|+.+|..|.++  +.+|+++++.  ..+.        +.+    ..++...+.+.+++.|++++. +.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   92 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARY--MLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIV   92 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCE
T ss_pred             cCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            5899999999999999999974  7899999985  1110        111    235677788888899999999 889


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      +.+..+++.+.+.+.+|+++.+|.+|+|+|..|..+
T Consensus        93 ~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           93 EKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccC
Confidence            888888778888888888999999999999987544

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.80  E-value=6.7e-09  Score=90.19  Aligned_cols=101  Identities=17%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----C-----------------------------ChhH
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----I-----------------------------GPKA  181 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----~-----------------------------~~~~  181 (290)
                      ...+|+|||+|++|+.+|..|..  .+.+|+++++.+.+...    .                             ...+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l  168 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELAL--LGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQL  168 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHH--CCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHH
Confidence            35789999999999999999997  48999999987654210    0                             0355


Q ss_pred             HHHHHHHHHhCCcEEEeCceEeecccC---CCceeEEc--C-CC--cEEeccEEEEccCCCCCc
Q 022896          182 GDKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLT--S-TG--DTINADCHFLCTGKPVGS  237 (290)
Q Consensus       182 ~~~~~~~~~~~gi~~~~~~~v~~i~~~---~~~~~v~~--~-~g--~~~~~d~vv~a~G~~~~~  237 (290)
                      ...+.+.+++.|++++.++.+++++.+   ++.+.+.+  . +|  +++.+|.||+|+|..+..
T Consensus       169 ~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          169 QLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             HHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            667788888899999999999988764   23456655  4 56  479999999999988754

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.80  E-value=2.8e-08  Score=87.90  Aligned_cols=57  Identities=14%  Similarity=-0.015  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-e-eEEcC------CC---------cEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLTS------TG---------DTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~-~v~~~------~g---------~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++.|+++++++.++++..++++ + .+.+.      +|         .++.+|.||.|.|..+.
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            67778888888999999999999998876543 3 36554      33         57999999999998764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.80  E-value=4.5e-09  Score=91.26  Aligned_cols=38  Identities=29%  Similarity=0.481  Sum_probs=34.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ...+||+|||||++||++|..|++ |.+|+|||+++..+
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g  128 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS  128 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccC
Confidence            457999999999999999999986 99999999987654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.78  E-value=2.5e-08  Score=87.58  Aligned_cols=56  Identities=21%  Similarity=0.313  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++.|++++.+ .|+++..++++  ..+.+.+|+++.+|.||.|+|..+.
T Consensus       166 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          166 LVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            67888888898999999999 79888775544  5677788888999999999998654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.75  E-value=5.6e-08  Score=81.61  Aligned_cols=99  Identities=19%  Similarity=0.277  Sum_probs=76.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCCh-------------hHHHHHHHHHHhCCcEEEeCce
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP-------------KAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      ..-+++|||+|..|+.+|..|.  ..+.+++++++.+.+. +..+             ++.....+++++.|++++.++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~--~~~~~itlie~~~~~~-y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~   84 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLP-YYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEF   84 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHT--TTCSCEEEECSSSSCC-BCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHh--CCCCEEEEEECCCCCC-cccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCE
Confidence            4568999999999999999994  4688999999876532 1111             1222345667889999999999


Q ss_pred             EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      |+.++.+..  .+.+.+|+++.+|.+|+|||..|..+
T Consensus        85 V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           85 ATSIDPNNK--LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             EEEEETTTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEEEECCCC--EEEECCCCEEECCEEEEecCCCcCCC
Confidence            988876554  56778888999999999999887644

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.75  E-value=6.4e-08  Score=79.68  Aligned_cols=96  Identities=19%  Similarity=0.134  Sum_probs=77.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------cC----ChhHHHHHHHHHHhCCcEEE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------FI----GPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~gi~~~  197 (290)
                      .+++|||+|+.|+.+|..|..  .+.+|+++++.+.+..               .+    ..++...+.+.+++.+++++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYS   83 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            579999999999999999986  4789999998764311               00    13556667777888899999


Q ss_pred             eCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          198 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       198 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      .++.|+.++.+++.+.+.+.+|+++.+|.+|+|+|..
T Consensus        84 ~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           84 LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             ESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             eCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            9999998887666677888888889999999999984

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.74  E-value=3.5e-08  Score=81.02  Aligned_cols=94  Identities=15%  Similarity=0.153  Sum_probs=77.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------C----ChhHHHHHHHHHHhCCcEEE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------I----GPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~gi~~~  197 (290)
                      .+++|||+|..|+.+|..|..  .+.+|+++++.+.+...               +    ..++...+.+.+++.|++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGM--RQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTIC   85 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence            589999999999999999987  48899999987643210               1    23567778888888899999


Q ss_pred             eCceEeecccCCC-ceeEEcCCCcEEeccEEEEccCC
Q 022896          198 LGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       198 ~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .++.|+.++.+++ .+.+.+.+|+ +.+|.+|+|+|.
T Consensus        86 ~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           86 LEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             CSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             ccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence            9999999987766 5778888875 999999999999

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.73  E-value=1e-07  Score=84.30  Aligned_cols=57  Identities=12%  Similarity=-0.022  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEE---cCCCc--EEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYL---TSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~---~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.|++++.++.++++..+ ++. ..+.   ..+|+  .+.++.||+|+|-..
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            367778888888899999999999999875 443 3333   25665  689999999999753

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.72  E-value=6.5e-08  Score=85.11  Aligned_cols=54  Identities=9%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC---C--cEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++.   +++++++++++.+++++.+++.+   |  +++.+|.||.|.|....
T Consensus       139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSP  197 (549)
T ss_dssp             HHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH
Confidence            4666777777766   88999999998888877776544   6  47999999999998753

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.72  E-value=1.9e-07  Score=77.74  Aligned_cols=98  Identities=19%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------cC----ChhHHHHHHHHHHhCCcEE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------FI----GPKAGDKTRDWLISKKVDV  196 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~gi~~  196 (290)
                      ..+++|||+|+.|+.+|..|..  .+.+|+++++.+.+..               .+    ...+...+.+.+++.++++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   91 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDV   91 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEE
Confidence            4689999999999999999986  4889999998764311               01    1356677788888889999


Q ss_pred             EeCceEeecccCCC-ceeEEcCCCcEEeccEEEEccCCCC
Q 022896          197 KLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       197 ~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      +.++.|+.++.+++ .+.+.+.+|+++.+|.+|+|+|..+
T Consensus        92 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           92 VLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             ECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             EcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence            99999998887655 5778888888899999999999843

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.71  E-value=7.4e-08  Score=84.10  Aligned_cols=56  Identities=18%  Similarity=0.144  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++.|++++.+ .|++++.++++  ..+.+.+|+++.+|.||.|+|.+..
T Consensus       174 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          174 EVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            67788888888999999999 89888875554  6677888888999999999998753

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.70  E-value=3.3e-08  Score=83.54  Aligned_cols=103  Identities=19%  Similarity=0.168  Sum_probs=73.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------CChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------IGPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      .+|||+|||+|+.|+.+|..|.....+.+|+++++.+.+...          ...+....-.+.+.++|++++.+ .++.
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~   79 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALG   79 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEE
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEE
Confidence            379999999999999999999876667899999987653211          01111111124456789999876 5655


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      ++.+  ...+.+.+|.++.||.+|+|+|.+++.+-+
T Consensus        80 id~~--~~~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           80 IDPD--KKLVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             EETT--TTEEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             EEcc--CcEEEecccceeecceeeeccCCccccCCc
Confidence            5543  445677889999999999999998765433

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.69  E-value=8.9e-08  Score=77.28  Aligned_cols=99  Identities=20%  Similarity=0.151  Sum_probs=77.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------cC-------ChhHHHHHHHHHHhC-CcEEEeCceE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------FI-------GPKAGDKTRDWLISK-KVDVKLGERV  202 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~-gi~~~~~~~v  202 (290)
                      .+++|||+|+.|+.+|..|...  +.+|+++++.+....      .+       ..++...+.+.+++. +++++.+ .+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v   79 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRA--RKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RV   79 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CE
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EE
Confidence            4799999999999999999874  789999997542210      01       125666777777776 7888765 88


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.+++.+.+.+.+|+++.+|.+|+|+|..|..+
T Consensus        80 ~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           80 TDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            888877777888888998999999999999987543

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.67  E-value=3.5e-08  Score=87.55  Aligned_cols=56  Identities=14%  Similarity=0.016  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHhCC-cEEEeCceEeecccCCCc-eeE--E-cCCCc--EEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTY--L-TSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~-~~v--~-~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.| ++++.++.++++..+++. ..+  . ..+|+  .+.++.||+|+|...
T Consensus       135 ~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s  197 (602)
T 1kf6_A          135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (602)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence            56777888888888 999999999998876553 222  2 36776  689999999999743

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.67  E-value=3.6e-08  Score=84.08  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=71.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhH-------------HHHHHHHHHhCCcEEEeCceEe
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA-------------GDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      |+|+|||+|..|+.+|..|.+..++.+|+++++.+.+.  +.+.+             ...+.+.+++.|++++.+ +++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~--~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~   79 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG--FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAE   79 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE--CGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc--cCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEE
Confidence            68999999999999999998876678999999887642  11111             112345566779999876 576


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .++.+.  .+|.+++|++++||.+|+|+|.++
T Consensus        80 ~Id~~~--~~V~~~~g~~i~YD~LViAtG~~~  109 (430)
T 3hyw_A           80 SIDPDA--NTVTTQSGKKIEYDYLVIATGPKL  109 (430)
T ss_dssp             EEETTT--TEEEETTCCEEECSEEEECCCCEE
T ss_pred             EEECCC--CEEEECCCCEEECCEEEEeCCCCc
Confidence            666544  457788999999999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.67  E-value=9e-08  Score=78.76  Aligned_cols=101  Identities=19%  Similarity=0.149  Sum_probs=80.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc----ccc------------ccC-----ChhHHHHHHHHHHhCC
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS----RLL------------EFI-----GPKAGDKTRDWLISKK  193 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~----~~~------------~~~-----~~~~~~~~~~~~~~~g  193 (290)
                      ..++++|||+|..|+.+|..|..+  +.+|+++++.+    .+.            +.+     ..++...+.+.+++.|
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   98 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARA--EIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG   98 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999974  88999999843    111            011     2367778888899999


Q ss_pred             cEEEeCceEeecccCCCceeEEc---CCCcEEeccEEEEccCCCCCch
Q 022896          194 VDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       194 i~~~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      ++++.++ ++.++.+++.+.+.+   .++.++.+|.+|+|+|.+|..+
T Consensus        99 v~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A           99 TEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             CEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             CEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            9999998 888888777777766   3667899999999999977543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.66  E-value=3.6e-08  Score=83.47  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      ++|+||||||+||++|..|++ |++|+||||.+..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            689999999999999999986 9999999997643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.64  E-value=5.7e-08  Score=83.09  Aligned_cols=103  Identities=16%  Similarity=0.188  Sum_probs=76.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHhh-hCCCCeEEEEecCcccccc----------C-ChhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          136 ARSILIVGGGPTGVELAGEIAV-DFPEKKVTLVHKGSRLLEF----------I-GPKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~-~~~~~~v~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      .++++|||+|..|+.+|..|.. ...+.+|+++++.+.+.-.          . ..++...+.+.+++.|++++. ..++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   82 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAE   82 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEE
Confidence            4789999999999999999986 2247899999988764210          0 112223356777889999985 5787


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      .++.+.+  .+.+.+|+++.+|.+|+|+|.+|+.+.++
T Consensus        83 ~id~~~~--~V~~~~g~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           83 QIDAEAQ--NITLADGNTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             EEETTTT--EEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred             EEEcCCC--EEEECCCCEEECCEEEECCCCCcCcccCC
Confidence            7765544  56777888899999999999988655443

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.61  E-value=2.5e-08  Score=85.64  Aligned_cols=55  Identities=9%  Similarity=-0.198  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccC--CCce-eEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~--~~~~-~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+++.|++++++++|+++..+  ++.+ .+.+ +|+++.+|.||+|+|.++
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFP  300 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccc
Confidence            78889999999999999999999999876  5553 4555 577899999999999875

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.60  E-value=2.7e-07  Score=75.01  Aligned_cols=98  Identities=22%  Similarity=0.229  Sum_probs=75.6

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc--cc---------cc---CChhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR--LL---------EF---IGPKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~--~~---------~~---~~~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      +++|||+|+.|+.+|..+..  .+.+++++++...  ..         ..   ..+.+...+.+.+++.|++++.++.++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   80 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSAR--KGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSAS   80 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEE
Confidence            68999999999999999986  4788998865310  00         00   113567778888888999999999998


Q ss_pred             ecccCC---CceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          204 LDSVSE---GSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       204 ~i~~~~---~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .+..+.   +...+.+.+|+++.+|.+|+|+|.+|..
T Consensus        81 ~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           81 KLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             EEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            886543   2577788888889999999999987654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.60  E-value=3.2e-07  Score=74.63  Aligned_cols=99  Identities=17%  Similarity=0.184  Sum_probs=76.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCcc---c--------cccC----C-hhHHHHHHHHHHhCCcEEEeC
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSR---L--------LEFI----G-PKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~---~--------~~~~----~-~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      .+++|||+|+.|+.+|..+.+.  +. +|+++++...   .        .+.+    . ..+...+.+.+++.|++++. 
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~--g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-   78 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRG--GVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-   78 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-
T ss_pred             ceEEEECccHHHHHHHHHHHHC--CCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-
Confidence            3689999999999999999873  77 9999997521   0        0111    1 35667777888889999998 


Q ss_pred             ceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          200 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.++.+++.+.+.+.+|+++.+|.+|+|+|.+|..+
T Consensus        79 ~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           79 TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCC
Confidence            788888776666777777888999999999999876543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.60  E-value=1.4e-07  Score=80.99  Aligned_cols=102  Identities=20%  Similarity=0.189  Sum_probs=77.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---cC----Ch------hHHHHHHHHHHhCCcEEEeCceEe
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FI----GP------KAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---~~----~~------~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      ++++|||+|..|+.+|..|.++.++.+|+++++.+.+..   ..    ..      .+.....+.+++.|++++.++.++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            589999999999999999998666899999998876431   00    00      111114566788999999999999


Q ss_pred             ecccCCCceeEE-cCCCcEEeccEEEEccCCCCCch
Q 022896          204 LDSVSEGSDTYL-TSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       204 ~i~~~~~~~~v~-~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      .++.+.+.+.+. ..+++++.+|.+|+|+|.+|..+
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCC
Confidence            888877766664 33556899999999999988654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.59  E-value=5.5e-07  Score=77.52  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=73.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhC-CCCe---EEEEecCcccccc------------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDF-PEKK---VTLVHKGSRLLEF------------------------------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~-~~~~---v~~~~~~~~~~~~------------------------------------  176 (290)
                      ++++|||+|++|+.+|..|.... .+.+   |+++++.+.+...                                    
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            58999999999999999998611 3667   9999987543110                                    


Q ss_pred             -C---------------ChhHHHHHHHHHHhCCcE--EEeCceEeecccCCC--ceeEEcCC---C--cEEeccEEEEcc
Q 022896          177 -I---------------GPKAGDKTRDWLISKKVD--VKLGERVNLDSVSEG--SDTYLTST---G--DTINADCHFLCT  231 (290)
Q Consensus       177 -~---------------~~~~~~~~~~~~~~~gi~--~~~~~~v~~i~~~~~--~~~v~~~~---g--~~~~~d~vv~a~  231 (290)
                       +               ...+...+.+.+++.|++  ++.++.|+.++.+++  .+.+.+.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence             0               023455667777778998  999999998876655  45565543   4  478999999999


Q ss_pred             C--CCCCch
Q 022896          232 G--KPVGSD  238 (290)
Q Consensus       232 G--~~~~~~  238 (290)
                      |  ..|+.+
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  555543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.58  E-value=3.4e-08  Score=82.10  Aligned_cols=44  Identities=25%  Similarity=0.486  Sum_probs=38.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC-CCcccchhhh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK-EYFEITWASL   54 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~-~~~~~~~~~~   54 (290)
                      ...+||+|||||++||++|++|++ |++|+|+|++ +.+|+.+...
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~   87 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF   87 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeee
Confidence            446899999999999999999976 9999999999 8888765543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.58  E-value=3.5e-08  Score=85.96  Aligned_cols=42  Identities=31%  Similarity=0.399  Sum_probs=36.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~   52 (290)
                      ...+||+|||||++||++|++|++ |++|+|+|+++.+|+.+.
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   53 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   53 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence            346899999999999999999986 999999999998886543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.58  E-value=3.3e-07  Score=75.32  Aligned_cols=98  Identities=22%  Similarity=0.094  Sum_probs=76.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEec----Cccccc------------cC-----ChhHHHHHHHHHHhCCcE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK----GSRLLE------------FI-----GPKAGDKTRDWLISKKVD  195 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~----~~~~~~------------~~-----~~~~~~~~~~~~~~~gi~  195 (290)
                      .+++|||+|+.|+.+|..|..  .+.+|+++++    ......            .+     ...+...+.+.+++.|++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~   86 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   86 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCE
Confidence            579999999999999999987  3789999987    222110            11     135667778888899999


Q ss_pred             EEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          196 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       196 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      ++.++ ++.++.+++.+.+.+ +|+++.+|.+|+|+|.+|..+
T Consensus        87 ~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~  127 (333)
T 1vdc_A           87 IFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRL  127 (333)
T ss_dssp             EECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred             EEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence            99987 877877777777877 777899999999999886543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.57  E-value=5.2e-07  Score=76.44  Aligned_cols=99  Identities=22%  Similarity=0.354  Sum_probs=74.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHH-------------HHHHHHHhCCcEEEeCceEe
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD-------------KTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gi~~~~~~~v~  203 (290)
                      ++++|||+|..|+.+|..|.++....+|+++++.+... +..+.+..             ...+.+++.|++++.++.++
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~-y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP-YDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS-BCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC-cCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence            58999999999999999999864445699999876532 11111111             22355678899999999998


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      .++.+.  ..+.+.+|+++.+|.+|+|||..|..+
T Consensus        82 ~id~~~--~~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           82 ALDVQT--RTISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EEETTT--TEEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEECCC--CEEEECCCCEEECCEEEEccCCcccCC
Confidence            776554  356777888999999999999887543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.57  E-value=3.6e-07  Score=76.21  Aligned_cols=96  Identities=21%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCccccc---------------------c------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLE---------------------F------------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~~~~---------------------~------------------  176 (290)
                      .+++|||+|..|+.+|..|...  +. +|+++++.+ +..                     .                  
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~--g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   81 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDF--GITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN   81 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred             CcEEEECcCHHHHHHHHHHHHc--CCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence            4799999999999999999873  66 899999875 100                     0                  


Q ss_pred             ---CC-hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          177 ---IG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       177 ---~~-~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                         .. ..+...+.+.+++.|++++.++.|++++.+++.+.+.+.++ ++.+|.||+|+|..+.
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence               00 23445566777889999999999988887766777877776 6999999999998764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.56  E-value=1.3e-07  Score=80.17  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=74.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhh-hCCCCeEEEEecCcccccc-----------CChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          137 RSILIVGGGPTGVELAGEIAV-DFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~-~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      ++++|||+|..|+.+|..|.+ ...+.+|+++++.+.+...           ...++...+.+.+++.|++++.+ .++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            589999999999999999987 3358899999988754211           11234445677777889999988 8877


Q ss_pred             cccCCCceeEEcCCC--cEEeccEEEEccCCCCCchhh
Q 022896          205 DSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       205 i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      ++.++..+.+...++  .++.+|.+|+|+|..|+.+.+
T Consensus        81 i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~i  118 (409)
T 3h8l_A           81 IDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELV  118 (409)
T ss_dssp             EETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGS
T ss_pred             EeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCC
Confidence            776655444443222  248999999999998765433

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.56  E-value=2.4e-07  Score=81.26  Aligned_cols=101  Identities=17%  Similarity=0.190  Sum_probs=79.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------------------------------------CC
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------------------------------------IG  178 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-------------------------------------~~  178 (290)
                      ..+++|||+|.+|+.+|..|.+  .+.+++++++.+.+...                                     ..
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~   98 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ   98 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred             CCCEEEECchHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence            3589999999999999999987  57899999986543210                                     01


Q ss_pred             hhHHHHHHHHHHhCCc--EEEeCceEeecccCCC--ceeEEcCCCcEEeccEEEEccC--CCCCch
Q 022896          179 PKAGDKTRDWLISKKV--DVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTG--KPVGSD  238 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G--~~~~~~  238 (290)
                      +++...+.+.+++.|+  +++.++.|++++.+++  .+.+.+.+|+++.+|.||+|+|  ..|..+
T Consensus        99 ~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p  164 (549)
T 4ap3_A           99 PEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTP  164 (549)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCC
Confidence            2556677778888898  8999999999987665  4788888998999999999999  455433

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.55  E-value=4e-07  Score=79.74  Aligned_cols=95  Identities=14%  Similarity=0.083  Sum_probs=77.0

Q ss_pred             CeEEEEcCchhHHHHHHHHh-hhCCCCeEEEEecCcccccc---------------------C----------------C
Q 022896          137 RSILIVGGGPTGVELAGEIA-VDFPEKKVTLVHKGSRLLEF---------------------I----------------G  178 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~-~~~~~~~v~~~~~~~~~~~~---------------------~----------------~  178 (290)
                      .+++|||+|.+|+.+|..|. +  .+.+++++++.+.+...                     +                .
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~--~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~   86 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHE--LGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQ   86 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEH
T ss_pred             CCEEEECcCHHHHHHHHHHHHc--CCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCH
Confidence            57999999999999999998 5  57899999986543210                     0                1


Q ss_pred             hhHHHHHHHHHHhCCc--EEEeCceEeecccCCC--ceeEEcCCCcEEeccEEEEccCC
Q 022896          179 PKAGDKTRDWLISKKV--DVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      +++...+.+.+++.|+  .++.++.|++++.+++  .+.+.+.+|+++.+|.||+|+|.
T Consensus        87 ~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A           87 PEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL  145 (540)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence            2456677788888898  8999999999987665  57888889989999999999995

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.54  E-value=5.3e-08  Score=82.94  Aligned_cols=53  Identities=9%  Similarity=-0.031  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      +........+..+.+++.+++|++++.+++++.+.+.+|+ +.+|.||+|++..
T Consensus       205 ~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          205 TQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             HHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred             HHHHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence            3444444445556688999999999888778888888875 9999999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.54  E-value=5.8e-08  Score=81.33  Aligned_cols=44  Identities=23%  Similarity=0.315  Sum_probs=38.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL   54 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~   54 (290)
                      ...+|++|||||++||++|++|++ |.+|+|+|+++.+|+.+...
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~   71 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDC   71 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCE
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCcccee
Confidence            346899999999999999999976 99999999999988776543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.54  E-value=7e-07  Score=73.11  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=75.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------ccC-----ChhHHHHHHHHHHhCCcEEEeC
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------EFI-----GPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------------~~~-----~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      .+++|||+|+.|+.+|..+.+  .+.+|+++++.. +.            +.+     ...+...+.+.+++.|++++. 
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-   84 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKGM-PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-   84 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC-TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-
T ss_pred             CCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCCC-CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-
Confidence            579999999999999999987  378999999872 20            111     125667778888899999987 


Q ss_pred             ceEeecccC--CCc-eeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          200 ERVNLDSVS--EGS-DTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       200 ~~v~~i~~~--~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      ..++.+..+  ++. +.+.+.+|+++.+|.+|+|+|.+|..+
T Consensus        85 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~  126 (325)
T 2q7v_A           85 DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKL  126 (325)
T ss_dssp             CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCC
T ss_pred             eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCC
Confidence            578777665  333 667677888999999999999876543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.54  E-value=4.4e-07  Score=77.40  Aligned_cols=103  Identities=20%  Similarity=0.204  Sum_probs=74.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---CC----------hhHHHHHHHHHHhCCcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---IG----------PKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---~~----------~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      ..+++|||+|..|+.+|..|.......+|+++++.+.+.-.   +.          ..+.....+.+++.|++++.++.+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            46899999999999999999875333489999976543110   00          011112245677899999999999


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      +.++.++.  .+.+.+|+++.+|.+|+|+|..|..+.+
T Consensus        84 ~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p~~~~i  119 (431)
T 1q1r_A           84 TAINRDRQ--QVILSDGRALDYDRLVLATGGRPRPLPV  119 (431)
T ss_dssp             EEEETTTT--EEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred             EEEECCCC--EEEECCCCEEECCEEEEcCCCCccCCCC
Confidence            88876543  5666788899999999999998765443

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.53  E-value=3.9e-07  Score=78.12  Aligned_cols=101  Identities=21%  Similarity=0.194  Sum_probs=74.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCC--eEEEEecCcccccc--C---------------------------------
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEF--I---------------------------------  177 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~--~v~~~~~~~~~~~~--~---------------------------------  177 (290)
                      ...+|+|||+|++|+.+|..|...  +.  +|+++++.+.+...  .                                 
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~--G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAE--KAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT--TCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc--CCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            357899999999999999999864  66  99999986532100  0                                 


Q ss_pred             -------------------------------ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC---Cc---
Q 022896          178 -------------------------------GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD---  220 (290)
Q Consensus       178 -------------------------------~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~---g~---  220 (290)
                                                     ...+.+.+.+.+++.+..++.++.|+.++.+++.+.+++.+   |+   
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence                                           01334555566666678899999999998776666676654   66   


Q ss_pred             EEeccEEEEccCC--CCCc
Q 022896          221 TINADCHFLCTGK--PVGS  237 (290)
Q Consensus       221 ~~~~d~vv~a~G~--~~~~  237 (290)
                      ++.+|.||+|+|.  .|+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEEESEEEECCCSSSSBCB
T ss_pred             EEEeCEEEECCCCCCCCCC
Confidence            7999999999998  4443

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.51  E-value=8.6e-08  Score=80.92  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=38.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-c-CCcEEEEcCCCCcccchhhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASL   54 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~~~~~~~~   54 (290)
                      .++||+|||||++||++|++|+ + |++|+|+|+++.+|+.+...
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~   50 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE   50 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeec
Confidence            3689999999999999999996 4 89999999999998876543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.50  E-value=4.4e-08  Score=85.64  Aligned_cols=41  Identities=24%  Similarity=0.477  Sum_probs=36.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCCcccchhh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~~~~~~~~   53 (290)
                      .+||+|||||++||+||++|++ | .+|+|+|+++.+|+....
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t   50 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT   50 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceee
Confidence            4899999999999999999976 8 999999999999876543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.50  E-value=6.8e-08  Score=80.50  Aligned_cols=36  Identities=33%  Similarity=0.351  Sum_probs=32.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+++||+|||||++|+++|++|++ |.+|+|||++..
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            446899999999999999999975 999999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.49  E-value=6.9e-07  Score=78.33  Aligned_cols=100  Identities=17%  Similarity=0.107  Sum_probs=76.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------------------------------c--CC
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------------------------------F--IG  178 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----------------------------------~--~~  178 (290)
                      ..+++|||+|.+|+.+|..|.+  .+.+++++++.+.+..                                   .  ..
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~--~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~   86 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQ--AGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ   86 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred             CCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence            3579999999999999999986  5789999998754310                                   0  12


Q ss_pred             hhHHHHHHHHHHhCCc--EEEeCceEeecccCCC--ceeEEcCCCcEEeccEEEEccC--CCCCc
Q 022896          179 PKAGDKTRDWLISKKV--DVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTG--KPVGS  237 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G--~~~~~  237 (290)
                      +++...+.+.+++.|+  .++.++.|++++.+++  .+.+.+.+|+++.||.||+|+|  ..|..
T Consensus        87 ~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           87 PEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            3566677777788887  7899999998877654  4688888998999999999999  45443

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.48  E-value=5.3e-08  Score=83.66  Aligned_cols=40  Identities=20%  Similarity=0.323  Sum_probs=36.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~   52 (290)
                      ++||+|||||++||+||++|++ |++|+|+|+++.+|+...
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   45 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            5899999999999999999976 999999999998886654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.48  E-value=9.5e-08  Score=82.93  Aligned_cols=42  Identities=31%  Similarity=0.277  Sum_probs=37.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~   52 (290)
                      ...+||+|||||++||+||++|++ |++|+|+|+++..|+...
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~   51 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVW   51 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCcee
Confidence            346899999999999999999976 999999999998887643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.47  E-value=5.9e-07  Score=77.05  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=72.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---C---------ChhHHHHHHHHH-HhCCcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---I---------GPKAGDKTRDWL-ISKKVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---~---------~~~~~~~~~~~~-~~~gi~~~~~~~v  202 (290)
                      .++++|||+|..|+.+|..|....++.+|+++++.+.+...   +         ..++.....+.+ ++.|++++.++.+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            46899999999999999999986568899999988753210   0         011222222334 6789999999999


Q ss_pred             eecccCCCceeEEcCCC-cEEeccEEEEccCCCCCchh
Q 022896          203 NLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPVGSDW  239 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~  239 (290)
                      +.++.  +...+.+.++ .++.+|.+|+|||..|..+-
T Consensus        83 ~~i~~--~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~  118 (449)
T 3kd9_A           83 IEVDT--GYVRVRENGGEKSYEWDYLVFANGASPQVPA  118 (449)
T ss_dssp             EEECS--SEEEEECSSSEEEEECSEEEECCCEEECCCS
T ss_pred             EEEec--CCCEEEECCceEEEEcCEEEECCCCCCCCCC
Confidence            76654  3456677777 38999999999998776443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.46  E-value=9.6e-07  Score=71.85  Aligned_cols=102  Identities=13%  Similarity=0.066  Sum_probs=75.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc----c------------ccC-----ChhHHHHHHHHHHhCCcE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL----L------------EFI-----GPKAGDKTRDWLISKKVD  195 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~----~------------~~~-----~~~~~~~~~~~~~~~gi~  195 (290)
                      ..++|||+|+.|+.+|..++.  .+.+|+++++...-    .            +.+     .+++...+.+.+++.+++
T Consensus         5 yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~   82 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTT   82 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcE
Confidence            579999999999999999986  48899999875420    0            011     135667778888899999


Q ss_pred             EEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          196 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       196 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                      +.... +.....+.+...+.+.++.++.+|.+|+|||..|..+.++
T Consensus        83 ~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ip  127 (314)
T 4a5l_A           83 IITET-IDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVP  127 (314)
T ss_dssp             EECCC-EEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCT
T ss_pred             EEEeE-EEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCC
Confidence            87654 4445555666677778888999999999999887654443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.46  E-value=6.9e-07  Score=79.34  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=79.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-----------ccC-C--hhHHHHHHHHHHhCCcEEEeCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----------EFI-G--PKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-----------~~~-~--~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      ..++++|||+|..|+.+|..|..+.++.+|+++++.+.+.           ... .  ..+...+....++.|++++.++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            4579999999999999999999866689999999887632           000 1  1123345566678899999999


Q ss_pred             eEeecccCCCceeEEc-CCCc--EEeccEEEEccCCCCCch
Q 022896          201 RVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       201 ~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      .++.++.+++.+.+.. .+|+  .+.+|.+|+|||..|..+
T Consensus       115 ~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          115 EVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            9999988777766653 4565  789999999999877544

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.46  E-value=6.5e-08  Score=82.51  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++||+||||||+|+++|+.|++ |++|+|||+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            56899999999999999999986 99999999987

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.45  E-value=1.2e-06  Score=71.11  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=70.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------cc------C-ChhHHHHHHHHHHhCC-cEEEeCceE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EF------I-GPKAGDKTRDWLISKK-VDVKLGERV  202 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------~~------~-~~~~~~~~~~~~~~~g-i~~~~~~~v  202 (290)
                      -.|+|||+|+.|+.+|..++.  .+.+|+++++...-.      +.      . .+++.....+.+.+.+ +.++....+
T Consensus         7 yDVvIIGaGpAGlsAA~~lar--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (304)
T 4fk1_A            7 IDCAVIGAGPAGLNASLVLGR--ARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVV   84 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEE
T ss_pred             cCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEE
Confidence            469999999999999988875  588999998753210      00      1 1244455555555554 556555544


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      .....+.+...+.+.+|+++.+|.+|+|||.+|..+
T Consensus        85 ~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p  120 (304)
T 4fk1_A           85 MITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFP  120 (304)
T ss_dssp             EEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred             EeeecCCCcEEEEECCCCEEEeCEEEEccCCccccc
Confidence            434445556788889999999999999999987544

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.45  E-value=1.1e-07  Score=82.17  Aligned_cols=52  Identities=13%  Similarity=0.045  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc---CCCcEEeccEEEEccCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~  234 (290)
                      .+.+.+.+.+   |.+++.+++|++++.+++++.+.+   .+|+++.+|.||+|++..
T Consensus       239 ~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~  293 (478)
T 2ivd_A          239 VLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  293 (478)
T ss_dssp             HHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHH
Confidence            4555555554   679999999999988877788877   677789999999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.45  E-value=1e-07  Score=81.47  Aligned_cols=101  Identities=17%  Similarity=0.101  Sum_probs=72.1

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------CC-h--hHHHHHHHHHHhCCcEEEeCceEe
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IG-P--KAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------~~-~--~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      ||+|||+|+.|+.+|..+++.....+|+++++.+...-.           .. .  .+.....+.+++.|++++.+++++
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            699999999999999999876556789999987643110           00 0  011112345677899999999998


Q ss_pred             ecccCCCceeEEcC---CCcEEeccEEEEccCCCCCch
Q 022896          204 LDSVSEGSDTYLTS---TGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       204 ~i~~~~~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      .+..+.....+...   ++.++.+|.+|+|||.+|+.+
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p  119 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL  119 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCC
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccc
Confidence            88776666555432   234688999999999987653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.44  E-value=1.6e-07  Score=78.34  Aligned_cols=41  Identities=17%  Similarity=0.295  Sum_probs=36.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~   53 (290)
                      ++|++|||||++|+++|++|++ |++|+|+|+++.+|+....
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   42 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence            3799999999999999999987 9999999999988876543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.44  E-value=9.4e-07  Score=72.12  Aligned_cols=98  Identities=15%  Similarity=0.180  Sum_probs=74.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-----------cccC-----ChhHHHHHHHHHHhCCcEEEeCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-----------LEFI-----GPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      .+++|||+|+.|+.+|..|.+  .+.+++++++...-           .+.+     .+.+...+.+.+++.|++++.++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence            579999999999999999986  47889999853210           0111     23566677788889999999886


Q ss_pred             eEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          201 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                       ++.++.+++.+.+ +.++.++.+|.+|+|+|.+|..+
T Consensus        84 -v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~~  119 (320)
T 1trb_A           84 -INKVDLQNRPFRL-NGDNGEYTCDALIIATGASARYL  119 (320)
T ss_dssp             -EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEECCC
T ss_pred             -eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCcCCC
Confidence             8777776666666 56777899999999999876543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.44  E-value=3.4e-07  Score=76.33  Aligned_cols=98  Identities=22%  Similarity=0.354  Sum_probs=71.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------CC-hhHHHHHHHHHHhCCcEEEeCceE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IG-PKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      .+.+++|||+|+.|+.+|..+.+.  + +|+++++.+.....           .+ ..+.....+.+++.|++++.++.+
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~--g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v   83 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQT--Y-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEA   83 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTT--S-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhc--C-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEE
Confidence            578999999999999999999863  5 99999987643210           01 112222345677889999999988


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.+.  ..+. .+|+++.+|.+|+|||.+|..+
T Consensus        84 ~~id~~~--~~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           84 KLIDRGR--KVVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EEEETTT--TEEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EEEECCC--CEEE-ECCcEEECCEEEECCCCCCCCC
Confidence            7776543  3455 5778899999999999987654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.44  E-value=8.6e-07  Score=76.54  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=67.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------cc-C------ChhH------HHHHHHHH-HhCCcE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EF-I------GPKA------GDKTRDWL-ISKKVD  195 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------~~-~------~~~~------~~~~~~~~-~~~gi~  195 (290)
                      .++++|||+|..|+.+|..|.++.++.+|+++++.+.+.      +. .      ...+      .....+.+ +..|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            368999999999999999999866689999999887641      10 0      0111      11122333 357999


Q ss_pred             EEeCceEeecccCCCceeEEc-CCCc--EEeccEEEEccCCCCCch
Q 022896          196 VKLGERVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       196 ~~~~~~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      ++.++.++.++.+.+.+.+.. .+|+  .+.+|.+|+|+|..|..+
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999998888777666653 3455  789999999999877543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.43  E-value=4.5e-07  Score=80.13  Aligned_cols=102  Identities=17%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------CC--hh-HHHHHHHHHHhCCcEEEeCceE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IG--PK-AGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------~~--~~-~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      ++++|||+|+.|+.+|..|..+.++.+|+++++.+.+.-.           ..  .. +........++.|++++.++.|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5899999999999999999986668899999988764210           00  01 1112333344579999999999


Q ss_pred             eecccCCCceeEEc-CCCc--EEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.+.+.+.+.. .+|+  ++.+|.+|+|||..|..+
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence            99988777666653 3344  789999999999977554

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.43  E-value=1.1e-06  Score=71.74  Aligned_cols=98  Identities=19%  Similarity=0.110  Sum_probs=74.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-----------cccC----ChhHHHHHHHHHHhCCcEEEeCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-----------LEFI----GPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++...-           .+.+    ...+...+.+.+++.|++++. .
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~   92 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAAR--SGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-V   92 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-C
T ss_pred             CCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-e
Confidence            4689999999999999999987  37899999974210           0111    135566777888889999988 6


Q ss_pred             eEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          201 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .++.++.+++.+.+.+ ++.++.+|.+|+|+|..|..
T Consensus        93 ~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           93 EVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             CEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             eEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence            7887876666566665 56689999999999987654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.43  E-value=5.6e-07  Score=76.08  Aligned_cols=100  Identities=15%  Similarity=0.189  Sum_probs=73.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---C----------ChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---I----------GPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      .++++|||+|..|+.+|..|.++....+|+++++.+...-.   +          ...+.....+.+.+.+++++. +.+
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v   79 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRM   79 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCE
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEE
Confidence            36899999999999999999985344489999987632110   0          112223345677889999999 888


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.+..  .+.+.+|+++.+|.+|+|||..|..+
T Consensus        80 ~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  113 (404)
T 3fg2_P           80 VSIDREGR--KLLLASGTAIEYGHLVLATGARNRML  113 (404)
T ss_dssp             EEEETTTT--EEEESSSCEEECSEEEECCCEEECCC
T ss_pred             EEEECCCC--EEEECCCCEEECCEEEEeeCCCccCC
Confidence            77766543  56677888999999999999876543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.42  E-value=5.9e-07  Score=76.25  Aligned_cols=101  Identities=19%  Similarity=0.161  Sum_probs=75.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-------cC------ChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------FI------GPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      ..+++|||+|..|+.+|..|.++....+|+++++.+.+.-       .+      ...+.....+.+++.|++++.++.+
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            4689999999999999999998544446999998764311       00      1122233456778899999999999


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.+.  ..+.+.+|+.+.+|.+|+|||..|..+
T Consensus        89 ~~id~~~--~~v~~~~g~~~~~d~lvlAtG~~~~~~  122 (415)
T 3lxd_A           89 VSLDPAA--HTVKLGDGSAIEYGKLIWATGGDPRRL  122 (415)
T ss_dssp             EEEETTT--TEEEETTSCEEEEEEEEECCCEECCCC
T ss_pred             EEEECCC--CEEEECCCCEEEeeEEEEccCCccCCC
Confidence            8776544  456677888999999999999887654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.41  E-value=1.8e-06  Score=71.05  Aligned_cols=99  Identities=22%  Similarity=0.271  Sum_probs=75.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc-----------cccC-----ChhHHHHHHHHHHhCCcEEEeC
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL-----------LEFI-----GPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      ..+++|||+|+.|+.+|..|..  .+.+++++++...-           .+.+     .+++...+.+.+++.|++++.+
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~   91 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRME   91 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECC
T ss_pred             cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEe
Confidence            4689999999999999999987  37889998853110           0111     1356677778888899999998


Q ss_pred             ceEeecccCCCceeE-EcCCCcEEeccEEEEccCCCCCch
Q 022896          200 ERVNLDSVSEGSDTY-LTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       200 ~~v~~i~~~~~~~~v-~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      + ++.++. .+.+.+ .+.+|+++.+|.+|+|+|..|..+
T Consensus        92 ~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~  129 (335)
T 2a87_A           92 D-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAARYL  129 (335)
T ss_dssp             C-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             e-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCccCC
Confidence            7 777766 455667 777888999999999999876543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.41  E-value=1e-06  Score=75.54  Aligned_cols=102  Identities=17%  Similarity=0.140  Sum_probs=75.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------cC-C-hhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------FI-G-PKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----------~~-~-~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      .+++|||+|..|+.+|..+.+..++.+|+++++.+.+..           .. . .++.....+.+++.|++++.++.++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            379999999999999999987656899999998765310           00 1 1122233566778899999999998


Q ss_pred             ecccCCCceeEEc-CCCc--EEeccEEEEccCCCCCch
Q 022896          204 LDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       204 ~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      .+..+++.+.+.. .+|+  ++.+|.+|+|||.+|..+
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  118 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL  118 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCC
Confidence            8877766666654 3465  489999999999887654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.41  E-value=1.8e-07  Score=80.91  Aligned_cols=42  Identities=21%  Similarity=0.154  Sum_probs=37.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCCcccchhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~~~~~~~~   53 (290)
                      +.+|++|||||++||++|++|++ | .+|+|+|+++.+|+.+..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            46899999999999999999976 7 799999999998877665

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.41  E-value=1.7e-06  Score=75.63  Aligned_cols=101  Identities=23%  Similarity=0.239  Sum_probs=77.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc--cc---------c---cCChhHHHHHHHHHHhCCcEEEeCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR--LL---------E---FIGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~--~~---------~---~~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      ...+++|||+|+.|+.+|..+..  .+.+++++++...  ..         .   ...+.+...+.+.+++.|++++.++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~  288 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQ  288 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSC
T ss_pred             CcccEEEECCcHHHHHHHHHHHh--CCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCC
Confidence            34679999999999999999987  4789999875311  00         0   0123567778888889999999999


Q ss_pred             eEeecccC---CCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          201 RVNLDSVS---EGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       201 ~v~~i~~~---~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      .++.+..+   ++...+.+.+|+++.+|.+|+|+|.+|..
T Consensus       289 ~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          289 SASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             CEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            99888653   23577888888899999999999987643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.39  E-value=1.4e-06  Score=73.83  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=72.5

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHH----------HHHHhCCcEEEeCceEeec
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR----------DWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~gi~~~~~~~v~~i  205 (290)
                      ..+++|||+|..|+.+|..|.+.....+|+++++.+.+. ...+.+...+.          +.+++.|++++.++.++.+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   85 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP-YDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   85 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC-BCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc-ccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEE
Confidence            468999999999999999999864444799999876532 11111111111          0355679999999999877


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      +.+.  ..+.+.+|+++.+|.+|+|+|.+|..+
T Consensus        86 ~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~  116 (408)
T 2gqw_A           86 DPQA--HTVALSDGRTLPYGTLVLATGAAPRAL  116 (408)
T ss_dssp             ETTT--TEEEETTSCEEECSEEEECCCEEECCC
T ss_pred             ECCC--CEEEECCCCEEECCEEEECCCCCCCCC
Confidence            6543  356667788999999999999987653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.39  E-value=1.8e-06  Score=70.15  Aligned_cols=97  Identities=20%  Similarity=0.158  Sum_probs=72.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEE-EecCcccc------------ccCC-----hhHHHHHHHHHHhCCcEEE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTL-VHKGSRLL------------EFIG-----PKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~-~~~~~~~~------------~~~~-----~~~~~~~~~~~~~~gi~~~  197 (290)
                      ..+++|||+|+.|+.+|..|...  +.++++ +++. .+.            +.+.     .++...+.+.+++.|++++
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~--g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRG--GLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHE   80 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH--TCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEE
Confidence            46899999999999999999974  788888 8863 221            1111     3677778888888999999


Q ss_pred             eCceEeecccCC--CceeE-EcCCCcEEeccEEEEccCCCCCch
Q 022896          198 LGERVNLDSVSE--GSDTY-LTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       198 ~~~~v~~i~~~~--~~~~v-~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      .+ .+..+ .++  +.+.+ ...++ ++.+|.+|+|+|..|..+
T Consensus        81 ~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           81 MV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             CC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             EE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence            88 77777 555  55664 33344 899999999999877544

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.37  E-value=7.7e-07  Score=76.41  Aligned_cols=102  Identities=17%  Similarity=0.110  Sum_probs=74.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------cC---Ch-hHHHHHHHHHHhCCcEEEeCce
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------FI---GP-KAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----------~~---~~-~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      .+++|||+|..|+.+|..+.+..++.+|+++++.+.+..           ..   ++ .+...+.+.+++.|++++.++.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   80 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ   80 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence            368999999999999999987656899999998864210           00   11 1222335667788999999999


Q ss_pred             EeecccCCCceeEEc-CC--CcEEeccEEEEccCCCCCch
Q 022896          202 VNLDSVSEGSDTYLT-ST--GDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       202 v~~i~~~~~~~~v~~-~~--g~~~~~d~vv~a~G~~~~~~  238 (290)
                      ++.++.+++.+.+.. .+  ++++.+|.+|+|+|.+|..+
T Consensus        81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p  120 (452)
T 2cdu_A           81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVP  120 (452)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCC
Confidence            988876666666543 22  45799999999999887644

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.37  E-value=3e-07  Score=77.14  Aligned_cols=41  Identities=20%  Similarity=0.472  Sum_probs=37.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~   53 (290)
                      ++|++|||||++|+++|++|++ |++|+|+|+++..|+.+..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence            3799999999999999999986 9999999999998877654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.36  E-value=2.2e-07  Score=80.35  Aligned_cols=41  Identities=22%  Similarity=0.228  Sum_probs=36.4

Q ss_pred             cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          194 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       194 i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+++.++.|++++.+++++.+.+.+| ++.+|.||+|++...
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~  289 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQ  289 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHH
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHH
Confidence            79999999999988888888999888 799999999998643

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.36  E-value=2.3e-07  Score=80.63  Aligned_cols=56  Identities=9%  Similarity=-0.052  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+++.| ++++.+++|++++.+++++.+.+.+|+++.+|.||+|+|...
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            67778888888888 999999999999888778888888888899999999999643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.36  E-value=2.7e-07  Score=75.34  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~   48 (290)
                      ..+||+|||||++|+++|++|++   |++|+|||++...+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            36899999999999999999975   99999999988755

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.35  E-value=1.6e-06  Score=74.97  Aligned_cols=102  Identities=18%  Similarity=0.126  Sum_probs=74.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---C----------ChhHHHHHHHHH-HhCCcEEEeCceE
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---I----------GPKAGDKTRDWL-ISKKVDVKLGERV  202 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---~----------~~~~~~~~~~~~-~~~gi~~~~~~~v  202 (290)
                      .+++|||+|..|+.+|..+.+...+.+|+++++.+.....   .          ...+.....+.+ +..|++++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5899999999999999999875458899999987653100   0          011222233445 3459999999999


Q ss_pred             eecccCCCceeEEc-CCCc--EEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.+++.+.+.. .+|+  ++.+|.+|+|+|.+|..+
T Consensus       117 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (480)
T 3cgb_A          117 TKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP  155 (480)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence            88887776666654 4566  799999999999887644

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.34  E-value=3e-07  Score=79.97  Aligned_cols=42  Identities=29%  Similarity=0.308  Sum_probs=37.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~   52 (290)
                      ...+||+|||||++||++|+.|++ |.+|+|+|+++..|+...
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~   73 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR   73 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence            346899999999999999999986 999999999998887543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.30  E-value=3.8e-07  Score=77.79  Aligned_cols=57  Identities=9%  Similarity=-0.097  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+.+.+.+.+++.|++++++++|+++..+++++.....+|+++.+|.||+++|.++
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCc
Confidence            378888999999999999999999999877766553335788899999999999876

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.30  E-value=3.5e-07  Score=75.84  Aligned_cols=45  Identities=18%  Similarity=0.051  Sum_probs=35.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ..+...+.+.+++.|++++. +.|++++..+           .+.+|.||+|+|.+.
T Consensus       142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s  186 (351)
T 3g3e_A          142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWA  186 (351)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcCh
Confidence            36888899999999999998 8887665321           267999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.29  E-value=1.4e-06  Score=75.05  Aligned_cols=102  Identities=15%  Similarity=0.064  Sum_probs=73.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCC---CeEEEEecCcccccc-------------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPE---KKVTLVHKGSRLLEF-------------------------------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~---~~v~~~~~~~~~~~~-------------------------------------  176 (290)
                      .+++|||+|++|+.+|..|.+....   .+|+++++.+.+...                                     
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~  110 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKH  110 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHT
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhc
Confidence            3799999999999999999875211   799999987642200                                     


Q ss_pred             --------------CChhHHHHHHHHHHhCCcEEEeCceEeecccC---CCc--eeEEcCCCc----EEeccEEEEccCC
Q 022896          177 --------------IGPKAGDKTRDWLISKKVDVKLGERVNLDSVS---EGS--DTYLTSTGD----TINADCHFLCTGK  233 (290)
Q Consensus       177 --------------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~---~~~--~~v~~~~g~----~~~~d~vv~a~G~  233 (290)
                                    ...++...+....++.+++++++++|+.++.+   ++.  +.+.+.+|+    ++.+|.||+|+|.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          111 DRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             TCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             CceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence                          01123344455556678999999999988765   222  366666665    8999999999998


Q ss_pred             CCCch
Q 022896          234 PVGSD  238 (290)
Q Consensus       234 ~~~~~  238 (290)
                      .|..+
T Consensus       191 ~p~~p  195 (463)
T 3s5w_A          191 TPRIP  195 (463)
T ss_dssp             EECCC
T ss_pred             CCCCc
Confidence            77543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.28  E-value=9.5e-07  Score=75.91  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||++|+.+|..|++ |.+|+++|+.+.+....       .+.........+.+  .++++. ...+..++..
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~-------~~~~~~~l~~~l~~--~Gv~i~~~~~V~~i~~~  237 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTM-------DLEVSRAAERVFKK--QGLTIRTGVRVTAVVPE  237 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS-------CHHHHHHHHHHHHH--HTCEEECSCCEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccccc-------CHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence            4789999999999999999976 99999999987643110       00110000011111  134444 3456666532


Q ss_pred             ----eEEecCceEEeccEEEEccCCCCCCC
Q 022896           91 ----EVLTAEGRRVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p  116 (290)
                          .+.+.++.++.+|.|++|+|.+|+.+
T Consensus       238 ~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          238 AKGARVELEGGEVLEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             TTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred             CCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence                24555778899999999999997654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.25  E-value=6.2e-06  Score=67.06  Aligned_cols=100  Identities=17%  Similarity=0.229  Sum_probs=70.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---cc--------cc----CChhHHHHHHHHHHhCCcEEEeCce
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---LL--------EF----IGPKAGDKTRDWLISKKVDVKLGER  201 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---~~--------~~----~~~~~~~~~~~~~~~~gi~~~~~~~  201 (290)
                      -.++|||+|+.|+.+|..++.  .+.+|+++++...   ..        +.    ..+++.........+.+..+..+..
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~--~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASR--ANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDI   84 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceee
Confidence            479999999999999999986  4889999987531   00        01    1235666677777888888887766


Q ss_pred             EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      ......  ........+++++.+|.+|+|||.+|..+-+
T Consensus        85 ~~~~~~--~~~~~~~~~~~~~~~d~liiAtGs~~~~~~i  121 (312)
T 4gcm_A           85 KSVEDK--GEYKVINFGNKELTAKAVIIATGAEYKKIGV  121 (312)
T ss_dssp             CEEEEC--SSCEEEECSSCEEEEEEEEECCCEEECCCCC
T ss_pred             eeeeee--ecceeeccCCeEEEeceeEEcccCccCcCCC
Confidence            543332  2233445567799999999999988765433

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.23  E-value=6.5e-07  Score=72.65  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-c--CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~~   48 (290)
                      ..+||+|||||++|+++|++|+ .  |++|+|+|++...+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g  103 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence            3479999999999999999996 3  89999999988765

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.22  E-value=1.9e-06  Score=74.81  Aligned_cols=99  Identities=21%  Similarity=0.304  Sum_probs=70.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHH--------H---------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT--------R---------------------  186 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~---------------------  186 (290)
                      ..+++|||+|..|+.+|..|.....+.+|+++++.+.+. ...+.+.+.+        .                     
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~-y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP-YMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   89 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC-BCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC-CCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence            367999999999999999998766789999999876431 1000000000        0                     


Q ss_pred             -----HH---HHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          187 -----DW---LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       187 -----~~---~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                           +.   +.+.|++++.++.++.++.+..  .+.+.+|+++.+|.+|+|||.+|..
T Consensus        90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~--~V~~~~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEECC
T ss_pred             hhcchhhhhhhhcCCeEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCCCC
Confidence                 00   1246899999999987765443  5667788899999999999988753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.22  E-value=8.3e-07  Score=77.79  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~   48 (290)
                      ..+||+|||||++||++|++|++|.+|+|+||....+
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~G~~V~vlEk~~~~~   43 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTE   43 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHhcCCcEEEEECCCCCC
Confidence            3589999999999999999997799999999998654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.19  E-value=8.5e-07  Score=79.30  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      .+||+|||||.+||+||++|++ |.+|+||||....
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            5899999999999999999986 9999999998754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.19  E-value=1e-05  Score=71.10  Aligned_cols=96  Identities=17%  Similarity=0.162  Sum_probs=72.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------------------cCC----------------h
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------FIG----------------P  179 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------------------~~~----------------~  179 (290)
                      .+++|||+|.+|+.+|..|.+.  +.+++++++.+.+..                     .+.                +
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~--G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLREL--GRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCEEEECccHHHHHHHHHHHhC--CCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            4799999999999999999974  789999998654310                     001                1


Q ss_pred             hHHHHHHHHHHhCC--cEEEeCceEeecccCCC--ceeEEcCCCcEEeccEEEEccCCC
Q 022896          180 KAGDKTRDWLISKK--VDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       180 ~~~~~~~~~~~~~g--i~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      ++...+....++.+  .+++.+++|++++.+++  .+.+.+.+|+++.+|.||+|+|..
T Consensus        95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence            34445555566665  67899999998887554  477888889899999999999964

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.19  E-value=2.7e-06  Score=73.88  Aligned_cols=100  Identities=13%  Similarity=0.108  Sum_probs=68.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------cCCh-hHHHHHHHHH--HhCCcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGP-KAGDKTRDWL--ISKKVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------~~~~-~~~~~~~~~~--~~~gi~~~~~~~v  202 (290)
                      .++|+|||+|..|+.+|..|..  .+.+|+++++.+.+.-          .+.+ .+...+.+.+  +..+++++.+ .+
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~--~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v  118 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDT--KKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EA  118 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCT--TTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EE
T ss_pred             CCCEEEECCcHHHHHHHHHhhh--CCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EE
Confidence            4689999999999999999975  4789999999875421          0111 1112233333  2347888755 67


Q ss_pred             eecccCCCceeEE------------------cCCCcEEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYL------------------TSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~------------------~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      +.++.+.+.+.+.                  ..++.+++||.+|+|+|..|+..
T Consensus       119 ~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          119 TSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             EEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            7777666555443                  24566899999999999987653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.17  E-value=2.5e-06  Score=73.17  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~   88 (290)
                      ..+++|||||+.|+.+|..|++ |.+|+++++.+.+....       .+..    ...+.+.+  .+++++ ...+..+.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~----~~~l~~~l~~~Gv~i~~~~~v~~i~  235 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-------DPMI----SETLVEVMNAEGPQLHTNAIPKAVV  235 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHH----HHHHHHHHHHHSCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhh-------hHHH----HHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            5789999999999999999976 99999999987543110       1111    01111111  133443 23555554


Q ss_pred             cc-----eEEecCceEEeccEEEEccCCCCCCC
Q 022896           89 EN-----EVLTAEGRRVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        89 ~~-----~v~~~~~~~~~~~~vi~a~G~~~~~p  116 (290)
                      ..     .+.+.+|.++.+|.+++|+|.+|+.+
T Consensus       236 ~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~  268 (450)
T 1ges_A          236 KNTDGSLTLELEDGRSETVDCLIWAIGREPAND  268 (450)
T ss_dssp             ECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred             EeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence            32     46677888899999999999998765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.17  E-value=2.3e-06  Score=73.69  Aligned_cols=94  Identities=27%  Similarity=0.322  Sum_probs=61.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~   88 (290)
                      ..+++|||||++|+.+|..|++ |.+|+|+|+.+.+....       .+..    ...+.+.+  .+++++ ...+..++
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~----~~~l~~~l~~~gV~i~~~~~v~~i~  237 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQG-------DPET----AALLRRALEKEGIRVRTKTKAVGYE  237 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHH----HHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccccc-------CHHH----HHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            4789999999999999999976 99999999987643210       0001    00111111  134444 33555554


Q ss_pred             cc----eEEec-C--ce--EEeccEEEEccCCCCCCCC
Q 022896           89 EN----EVLTA-E--GR--RVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        89 ~~----~v~~~-~--~~--~~~~~~vi~a~G~~~~~p~  117 (290)
                      ..    .+.+. +  |.  ++.+|.|++|+|.+|+.+.
T Consensus       238 ~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  275 (464)
T 2eq6_A          238 KKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG  275 (464)
T ss_dssp             EETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred             EeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence            32    24443 4  65  7999999999999987654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.17  E-value=1e-06  Score=73.88  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=30.9

Q ss_pred             CcEEEEcCChHHHHHHHHhc-c--CCcEEEEcCCCCc
Q 022896           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF   47 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~   47 (290)
                      +||+|||||++|+++|..|+ .  |.+|+|||+++..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            48999999999999999996 4  8999999998765

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.16  E-value=2.7e-06  Score=73.17  Aligned_cols=94  Identities=17%  Similarity=0.288  Sum_probs=60.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~   88 (290)
                      ..+++|||||++|+.+|..|++ |.+|+++++.+.+....       .+...    ..+.+.+  .++++. ...+..++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~----~~l~~~l~~~gv~i~~~~~v~~i~  239 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY-------DSELT----APVAESLKKLGIALHLGHSVEGYE  239 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS-------CHHHH----HHHHHHHHHHTCEEETTCEEEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccccc-------CHHHH----HHHHHHHHHCCCEEEECCEEEEEE
Confidence            4789999999999999999986 99999999987653211       01110    0111111  133333 23455554


Q ss_pred             cceE--EecCc--eEEeccEEEEccCCCCCCCC
Q 022896           89 ENEV--LTAEG--RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        89 ~~~v--~~~~~--~~~~~~~vi~a~G~~~~~p~  117 (290)
                      ...+  ...+|  .++.+|.+++|+|.+|+.+.
T Consensus       240 ~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~  272 (458)
T 1lvl_A          240 NGCLLANDGKGGQLRLEADRVLVAVGRRPRTKG  272 (458)
T ss_dssp             TTEEEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred             eCCEEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence            3222  22245  58999999999999987653

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.15  E-value=1.6e-06  Score=71.57  Aligned_cols=34  Identities=35%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++||+|||||++|+.+|++|++ |.+|+|+|++..
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            3799999999999999999986 999999998763

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.15  E-value=3.6e-06  Score=70.59  Aligned_cols=93  Identities=19%  Similarity=0.297  Sum_probs=62.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~   88 (290)
                      ..+++|||||+.|+.+|..|++ |.+|+++|+.+.+....      .....    ...+.+.+  .++++. ...+..+.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------~~~~~----~~~l~~~l~~~gv~i~~~~~v~~i~  214 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL------LHPAA----AKAVQAGLEGLGVRFHLGPVLASLK  214 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT------SCHHH----HHHHHHHHHTTTCEEEESCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc------cCHHH----HHHHHHHHHHcCCEEEeCCEEEEEE
Confidence            5899999999999999999976 99999999987643211      00000    01111111  134443 33455554


Q ss_pred             cc----eEEecCceEEeccEEEEccCCCCCC
Q 022896           89 EN----EVLTAEGRRVVYDYLVIATGHKDPV  115 (290)
Q Consensus        89 ~~----~v~~~~~~~~~~~~vi~a~G~~~~~  115 (290)
                      ..    .+.+.++.++.+|.+++|+|..|+.
T Consensus       215 ~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          215 KAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             EETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             ecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence            32    4667788889999999999998764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.14  E-value=1.4e-06  Score=78.22  Aligned_cols=42  Identities=36%  Similarity=0.529  Sum_probs=37.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~   52 (290)
                      ...+||+|||||++||++|++|.+ |++|+|+|+++..|+...
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~  147 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA  147 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            456899999999999999999975 999999999998886543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.14  E-value=3e-06  Score=72.95  Aligned_cols=93  Identities=17%  Similarity=0.302  Sum_probs=62.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~   88 (290)
                      ..+++|||||.+|+.+|..|++ |.+|+++++.+.+....       .+...    ..+.+.+  .++++. ...+..+.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~-------~~~~~----~~l~~~l~~~gv~i~~~~~v~~i~  234 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQF-------DPLLS----ATLAENMHAQGIETHLEFAVAALE  234 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHHH----HHHHHHHHHTTCEEESSCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccccc-------CHHHH----HHHHHHHHHCCCEEEeCCEEEEEE
Confidence            4789999999999999999976 99999999987543111       01110    0111111  134443 23455554


Q ss_pred             cc----eEEecCce-EEeccEEEEccCCCCCCC
Q 022896           89 EN----EVLTAEGR-RVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        89 ~~----~v~~~~~~-~~~~~~vi~a~G~~~~~p  116 (290)
                      ..    .+.+.+|. ++.+|.+++|+|..|+.+
T Consensus       235 ~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~  267 (463)
T 2r9z_A          235 RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR  267 (463)
T ss_dssp             EETTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred             EeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence            32    46677887 899999999999998765

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.13  E-value=1.6e-06  Score=74.92  Aligned_cols=54  Identities=15%  Similarity=0.047  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHhC--------CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          180 KAGDKTRDWLISK--------KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       180 ~~~~~~~~~~~~~--------gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .+.+.+.+.+.+.        |.+++.++.|++++.+++++.|.+.+|+++.+|.||+|++.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCH
Confidence            4555555555443        67899999999999888888899999989999999999875

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.13  E-value=1.4e-06  Score=78.09  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~   46 (290)
                      .+||+||||||+||++|..|++  |.+|+|||+.+.
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            5899999999999999999965  999999999875

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.13  E-value=2.3e-05  Score=69.38  Aligned_cols=98  Identities=19%  Similarity=0.144  Sum_probs=73.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-ccc-----------------------c----------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LLE-----------------------F----------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~-~~~-----------------------~----------------  176 (290)
                      .+|+|||+|..|+++|..++.  .+.+|.++++... +..                       .                
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAAR--MGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CCEEEECChHHHHHHHHHHHh--CCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            479999999999999999986  4889999997631 100                       0                


Q ss_pred             --------------CC-hhHHHHHHHHHHh-CCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          177 --------------IG-PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       177 --------------~~-~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                                    .+ ..+...+.+.+++ .|++++ ++.++.+..+++. ..|.+.+|.++.+|.||+|+|..+..
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~  183 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDG  183 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCC
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccC
Confidence                          00 1345566777777 699995 5688888766665 46777888889999999999987643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.12  E-value=1.8e-06  Score=78.61  Aligned_cols=42  Identities=17%  Similarity=0.128  Sum_probs=38.0

Q ss_pred             CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          192 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       192 ~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .|+++++++.|++++.+++++.+.+.+|+++.+|.||+|++.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence            488999999999999888889999889989999999999864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.11  E-value=1.4e-06  Score=76.22  Aligned_cols=56  Identities=14%  Similarity=0.087  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHh-CCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+...+.+.+++ .|++++.+ .|++++.++++  +.+.+.+|+++.+|.||.|+|..+.
T Consensus       176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            677888888888 89999999 59888766544  4677778778999999999998753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.11  E-value=1.9e-06  Score=78.98  Aligned_cols=41  Identities=34%  Similarity=0.523  Sum_probs=36.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~   51 (290)
                      ...+||+|||||++||++|++|.+ |++|+|||+++.+|+.+
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~  317 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  317 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence            346899999999999999999975 99999999999888654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=98.11  E-value=6.7e-06  Score=70.39  Aligned_cols=34  Identities=24%  Similarity=0.551  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +.++++|+|+|-.|.++|..|.. |++|+++|+++
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            35789999999999999999975 99999999987

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.10  E-value=2.9e-05  Score=67.50  Aligned_cols=100  Identities=24%  Similarity=0.263  Sum_probs=71.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCC-CCeEEEEecCccccc-----------------------------cC---------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLE-----------------------------FI---------  177 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~-~~~v~~~~~~~~~~~-----------------------------~~---------  177 (290)
                      .+++|||+|..|+.+|..+.++.+ +.+|+++++.+ +..                             .+         
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            479999999999999999987544 78999999874 100                             00         


Q ss_pred             Ch-h-----------HHHHHHHHHHhCCcEEEeCceEeecccC----CCceeEEcCCCc--EEeccEEEEccCCCCCch
Q 022896          178 GP-K-----------AGDKTRDWLISKKVDVKLGERVNLDSVS----EGSDTYLTSTGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       178 ~~-~-----------~~~~~~~~~~~~gi~~~~~~~v~~i~~~----~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      +. .           +...+.+.+++.|++++.++ ++.+..+    ++.+.+...+|+  .+.+|.+|+|+|..|..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p  159 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL  159 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            00 1           12234566788899999986 5444431    144677777776  799999999999887644

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.10  E-value=1.5e-05  Score=67.22  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=72.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------CCh-h---H-----------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGP-K---A-----------------------  181 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-------~~~-~---~-----------------------  181 (290)
                      ..+|+|||+|..|+.+|..|..  .+.+|+++++.+.....       +.+ .   .                       
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~  103 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIAD  103 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEEC
Confidence            4689999999999999999986  48899999987542110       000 0   0                       


Q ss_pred             -----------------------HHHHHHHHHhC--CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          182 -----------------------GDKTRDWLISK--KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       182 -----------------------~~~~~~~~~~~--gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                                             ...+.+.|.+.  +++++.+++|++++.+++++.+.+.+|+++.+|.||.|.|..+.
T Consensus       104 ~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          104 EKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             SSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             CCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence                                   00122222221  36788999999998887778888889988999999999998654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.09  E-value=1.9e-05  Score=64.55  Aligned_cols=101  Identities=20%  Similarity=0.150  Sum_probs=71.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------C
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------I  177 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~  177 (290)
                      ..+++|||+|..|+.+|..+..+.++.+|.++++.+.+...                                      .
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            46899999999999999999875458899999987543200                                      0


Q ss_pred             ChhHHHHHHHHHHh-CCcEEEeCceEeecccCC-----------------C--c-eeEEc------C--------CCcEE
Q 022896          178 GPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSE-----------------G--S-DTYLT------S--------TGDTI  222 (290)
Q Consensus       178 ~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~-----------------~--~-~~v~~------~--------~g~~~  222 (290)
                      ..++...+.+.+++ .|++++.++.++++..++                 +  . ..+..      .        +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            12344666777777 599999999998886654                 2  1 12211      1        22479


Q ss_pred             eccEEEEccCCCCC
Q 022896          223 NADCHFLCTGKPVG  236 (290)
Q Consensus       223 ~~d~vv~a~G~~~~  236 (290)
                      .++.||.|+|....
T Consensus       239 ~Ak~VV~ATG~~s~  252 (344)
T 3jsk_A          239 NAPVIISTTGHDGP  252 (344)
T ss_dssp             ECSEEEECCCSSSS
T ss_pred             EcCEEEECCCCCch
Confidence            99999999998653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.09  E-value=1.8e-06  Score=76.69  Aligned_cols=34  Identities=24%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+||||||||++||+||++|++ |.+|+||||...
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~   52 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            5899999999999999999986 999999999874

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.08  E-value=9.1e-06  Score=70.64  Aligned_cols=95  Identities=14%  Similarity=0.194  Sum_probs=62.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||+.|+.+|..|++ |.+|+++++.+.+....       .+.........+.+  .++++. ...+..+...
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------d~~~~~~l~~~l~~--~gv~i~~~~~v~~i~~~  246 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF-------DESVINVLENDMKK--NNINIVTFADVVEIKKV  246 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTS-------CHHHHHHHHHHHHH--TTCEEECSCCEEEEEES
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCccc-------chhhHHHHHHHHHh--CCCEEEECCEEEEEEEc
Confidence            5789999999999999999976 99999999987643110       11110100011111  133443 3345555432


Q ss_pred             -----eEEecCceE-EeccEEEEccCCCCCCC
Q 022896           91 -----EVLTAEGRR-VVYDYLVIATGHKDPVP  116 (290)
Q Consensus        91 -----~v~~~~~~~-~~~~~vi~a~G~~~~~p  116 (290)
                           .+.+.+|.+ +.+|.+++|+|.+|+.+
T Consensus       247 ~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~  278 (500)
T 1onf_A          247 SDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE  278 (500)
T ss_dssp             STTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred             CCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence                 466677877 99999999999998764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.08  E-value=5.2e-06  Score=72.54  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=61.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeec
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITE   89 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~   89 (290)
                      ...+++|||||+.|+-.|..+++ |.+|+|++++..+...        .++........+..  .++.+. ...+..+..
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~--------D~ei~~~l~~~l~~--~gi~~~~~~~v~~~~~  291 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGF--------DQQCAVKVKLYMEE--QGVMFKNGILPKKLTK  291 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTS--------CHHHHHHHHHHHHH--TTCEEEETCCEEEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccccc--------chhHHHHHHHHHHh--hcceeecceEEEEEEe
Confidence            35889999999999999999987 9999999986543211        11111111111111  122332 223333332


Q ss_pred             c----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           90 N----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        90 ~----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      .    .+...++..+.+|.|++|+|.+|+...
T Consensus       292 ~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~  323 (542)
T 4b1b_A          292 MDDKILVEFSDKTSELYDTVLYAIGRKGDIDG  323 (542)
T ss_dssp             ETTEEEEEETTSCEEEESEEEECSCEEESCGG
T ss_pred             cCCeEEEEEcCCCeEEEEEEEEcccccCCccc
Confidence            2    466777888899999999999998765

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.07  E-value=3.2e-05  Score=68.35  Aligned_cols=100  Identities=18%  Similarity=0.187  Sum_probs=73.6

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-ccc-----------------------c-------------
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LLE-----------------------F-------------  176 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~-~~~-----------------------~-------------  176 (290)
                      ....+|+|||+|..|+++|..++.  .+.+|.++++... +..                       .             
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f   96 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVAR--GGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQF   96 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             cCcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence            344689999999999999999987  4889999997631 100                       0             


Q ss_pred             -----------------CC-hhHHHHHHHHHHh-CCcEEEeCceEeecccCCCcee-EEcCCCcEEeccEEEEccCCCCC
Q 022896          177 -----------------IG-PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       177 -----------------~~-~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                                       .+ ..+...+.+.+++ .|++++. ..++.+..+++.+. +.+.+|+++.+|.||+|+|..++
T Consensus        97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A           97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                             00 1345566777777 4999965 47877776666644 77888889999999999998754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.07  E-value=1.5e-05  Score=68.75  Aligned_cols=98  Identities=24%  Similarity=0.194  Sum_probs=70.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------------------------------------CC
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------------------------------------IG  178 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-------------------------------------~~  178 (290)
                      ..+++|||+|+.|+.+|..+.+.  +.+|+++++.+.+...                                     .+
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEID   83 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            46899999999999999999874  7899999988643110                                     00


Q ss_pred             h-h-----------HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCCch
Q 022896          179 P-K-----------AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       179 ~-~-----------~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~  238 (290)
                      . .           +...+.+.+++.|++++.++.+.   .+.+.+.+.+.+|  +++.+|.+|+|+|..|..+
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p  154 (470)
T 1dxl_A           84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSL  154 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---EETTEEEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence            0 0           11123455677899999998763   3445567776677  6899999999999887543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.06  E-value=5.7e-06  Score=70.92  Aligned_cols=89  Identities=16%  Similarity=0.120  Sum_probs=67.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-------c--CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------F--IGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      ..++|+|||+|+.|+.+|..|...  +.+|+++++.+.+..       .  +..++.....+.+++.|++++.++.+.  
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~--G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~--  196 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAK--GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG--  196 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec--
Confidence            357899999999999999999974  789999998876421       1  244566777888899999999998762  


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                          ..  +.+.++ .+.+|.||+|+|..
T Consensus       197 ----~~--v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          197 ----RD--ASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             ----TT--BCHHHH-HSSCSEEEECCCCC
T ss_pred             ----cE--EEhhHh-HhhCCEEEEecCCC
Confidence                11  222222 35799999999986

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.05  E-value=1.9e-05  Score=68.21  Aligned_cols=97  Identities=20%  Similarity=0.162  Sum_probs=69.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------CC
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------IG  178 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~~  178 (290)
                      .+++|||+|+.|+.+|..+.+.  +.+|+++++.+.+...                                      .+
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~   84 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQL--GFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLN   84 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccC
Confidence            5799999999999999999874  8899999988643110                                      00


Q ss_pred             -hh-----------HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC-C-cEEeccEEEEccCCCCCch
Q 022896          179 -PK-----------AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-G-DTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       179 -~~-----------~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~-g-~~~~~d~vv~a~G~~~~~~  238 (290)
                       +.           +...+.+.+++.|++++.++...   .+.+.+.+.+.+ | +++.+|.+|+|||..|..+
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p  155 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKI---TGKNQVTATKADGGTQVIDTKNILIATGSEVTPF  155 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---EETTEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCC
Confidence             00           11123566778899999987642   244567777776 4 5799999999999887543

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.04  E-value=2.1e-06  Score=77.12  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc------CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF------SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~------g~~v~vie~~~~   46 (290)
                      ++||+||||||+||++|..|++      |.+|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            5899999999999999999965      999999999764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=1.8e-05  Score=67.96  Aligned_cols=96  Identities=27%  Similarity=0.269  Sum_probs=69.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------------------------------------CCh-
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------------------------------------IGP-  179 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------------------------------------~~~-  179 (290)
                      .+++|||+|+.|+.+|..+.+  .+.+|+++++. .+...                                    .+. 
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFA   80 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            479999999999999999987  38899999986 22100                                    000 


Q ss_pred             -----------hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC-cEEeccEEEEccCCCCCch
Q 022896          180 -----------KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       180 -----------~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~  238 (290)
                                 .+...+.+.+++.|++++.++.+.   .+.+.+.+.+.+| +++.+|.+|+|+|..|..+
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~  148 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF---VDANTVRVVNGDSAQTYTFKNAIIATGSRPIEL  148 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE---EETTEEEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCC
Confidence                       022224556778899999998663   3455677777777 6899999999999987543

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.02  E-value=5.1e-05  Score=66.94  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-ccc-----------------------c---------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LLE-----------------------F---------------  176 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~-~~~-----------------------~---------------  176 (290)
                      ..+|+|||+|..|+++|..++.  .+.+|.++++... +..                       .               
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~  104 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKM  104 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceee
Confidence            3589999999999999999986  4889999997631 100                       0               


Q ss_pred             ---------------CC-hhHHHHHHHHHHh-CCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          177 ---------------IG-PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       177 ---------------~~-~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                                     .+ ..+...+.+.+++ .|++++ ++.|+.+..+++. ..|.+.+|.++.+|.||+|+|..++.
T Consensus       105 l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          105 LNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             cccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence                           00 1245566777777 599995 6789888776665 45778888899999999999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.02  E-value=2.3e-05  Score=67.72  Aligned_cols=94  Identities=22%  Similarity=0.225  Sum_probs=68.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------CC
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------IG  178 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~~  178 (290)
                      .+++|||+|+.|+.+|..+.+.  +.+|+++++.+.+...                                      ++
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~   83 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKIN   83 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            5799999999999999999874  7899999985433100                                      00


Q ss_pred             -h-----------hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cE------EeccEEEEccCCCC
Q 022896          179 -P-----------KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DT------INADCHFLCTGKPV  235 (290)
Q Consensus       179 -~-----------~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~------~~~d~vv~a~G~~~  235 (290)
                       .           .+...+.+.+++.|++++.++.+.   .+++.+.+.+.+|  ++      +.+|.+|+|+|.+|
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A           84 VANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF---EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence             0           011124456778899999998774   2455677777777  56      99999999999876

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.01  E-value=1.4e-05  Score=68.80  Aligned_cols=97  Identities=13%  Similarity=0.158  Sum_probs=69.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------------------------------CCh-h----
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------------------------------IGP-K----  180 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-------------------------------~~~-~----  180 (290)
                      .+++|||+|+.|+.+|..+.+  .+.+|+++++.+.+...                               ++. .    
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDR   82 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHH
Confidence            479999999999999999987  48899999976654211                               000 0    


Q ss_pred             ---H---H--HHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcE--EeccEEEEccCCCCCch
Q 022896          181 ---A---G--DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT--INADCHFLCTGKPVGSD  238 (290)
Q Consensus       181 ---~---~--~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~--~~~d~vv~a~G~~~~~~  238 (290)
                         +   .  ..+.+.+++.|++++.+ .++.+  +.+.+.+...+|++  +.+|.+|+|+|..|..+
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~i--d~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           83 KDYVQELRFKQHKRNMSQYETLTFYKG-YVKIK--DPTHVIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEE--ETTEEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             HHhheeccccchHHHHHHhCCCEEEEe-EEEEe--cCCeEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence               0   0  33344455679999877 45433  35567777788888  99999999999877644

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.01  E-value=1.8e-05  Score=68.20  Aligned_cols=97  Identities=20%  Similarity=0.171  Sum_probs=70.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------CC
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------IG  178 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~~  178 (290)
                      .+++|||+|..|+.+|..+.+  .+.+|+++++.+.+...                                      .+
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQ--LGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMD   80 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            479999999999999999987  48899999988543110                                      00


Q ss_pred             -hh-----------HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCCch
Q 022896          179 -PK-----------AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       179 -~~-----------~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~  238 (290)
                       ..           +...+.+.+++.|++++.++.+.   .+.+.+.+.+.+|  +++.+|.+|+|||..|..+
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p  151 (468)
T 2qae_A           81 SAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF---ETAHSIRVNGLDGKQEMLETKKTIIATGSEPTEL  151 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE---EETTEEEEEETTSCEEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---eeCCEEEEEecCCceEEEEcCEEEECCCCCcCCC
Confidence             00           11123455677899999887652   3455677777777  6899999999999887543

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.01  E-value=2.5e-06  Score=76.33  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-------CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-------g~~v~vie~~~~   46 (290)
                      .+||||||||+|||+||++|++       |.+|+||||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            5899999999999999999964       899999999753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.01  E-value=3.5e-06  Score=73.75  Aligned_cols=36  Identities=42%  Similarity=0.566  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~   47 (290)
                      ..||+||||||++|+.+|.+|.+  +++|+|||++...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            37999999999999999999975  7899999998753

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.00  E-value=2.3e-05  Score=67.48  Aligned_cols=95  Identities=14%  Similarity=0.099  Sum_probs=69.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------------------------------------CCh-
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------------------------------------IGP-  179 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------------------------------------~~~-  179 (290)
                      .+++|||+|+.|+.+|..+.+  .+.+|+++++.. +...                                    .+. 
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQ--LGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYG   80 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHH
Confidence            479999999999999999987  488999999862 2100                                    000 


Q ss_pred             -----------hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCCc
Q 022896          180 -----------KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGS  237 (290)
Q Consensus       180 -----------~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~  237 (290)
                                 .+...+.+.+++.|++++.++.+.   .+++.+.+.+.+|  +++.+|.+|+|+|..|..
T Consensus        81 ~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           81 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence                       011223566778899999888653   4555677777777  689999999999998754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.00  E-value=1.4e-05  Score=69.25  Aligned_cols=94  Identities=22%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc-cceEE-eeeeeeeec
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV-NGRIV-ASPAINITE   89 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~   89 (290)
                      ..+++|||||+.|+.+|..|++ |.+|+++++.+.+....       .+....    .+.+.+. .+.+. ...+..+..
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------d~~~~~----~l~~~l~~~V~i~~~~~v~~i~~  242 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ-------DEEMKR----YAEKTFNEEFYFDAKARVISTIE  242 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCC-------CHHHHH----HHHHHHHTTSEEETTCEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccC-------CHHHHH----HHHHHHhhCcEEEECCEEEEEEE
Confidence            5889999999999999999986 99999999988653211       001100    0111110 12332 234444433


Q ss_pred             c----eEEec--Cc--eEEeccEEEEccCCCCCCCC
Q 022896           90 N----EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        90 ~----~v~~~--~~--~~~~~~~vi~a~G~~~~~p~  117 (290)
                      .    .+.+.  +|  .++.+|.|++|+|..|+.+.
T Consensus       243 ~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~  278 (492)
T 3ic9_A          243 KEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK  278 (492)
T ss_dssp             CSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred             cCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence            2    24432  56  68999999999999976553

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.98  E-value=4.7e-06  Score=74.58  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc---c--CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ---F--SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~---~--g~~v~vie~~~~   46 (290)
                      ..+||||||||++||+||++|+   +  |.+|+|+||...
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            3589999999999999999998   3  999999999874

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.98  E-value=8e-06  Score=70.85  Aligned_cols=99  Identities=19%  Similarity=0.110  Sum_probs=70.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------CC---hhHHHHHHHHHHhCCcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------IG---PKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      ..+++|||+|..|+.+|..|.++   .+|+++++.+.+...          +.   .++...+.+.+ +.|++++.++.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v  183 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA  183 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred             cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence            45799999999999999999863   899999987754221          11   12222333333 569999999999


Q ss_pred             eecccCCCceeEEc-CCCc--EEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                      ..+..+++.+.+.. .+++  .+.+|.+|+|+|..|..+
T Consensus       184 ~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          184 LGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             CCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            77776655544433 3453  689999999999877543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.96  E-value=1.8e-05  Score=68.47  Aligned_cols=96  Identities=21%  Similarity=0.222  Sum_probs=67.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------------------------------------CCh-
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------------------------------------IGP-  179 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------------------------------------~~~-  179 (290)
                      .+++|||+|..|+.+|..+..  .+.+|+++++.+.+...                                    .+. 
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDID   84 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            479999999999999999987  48899999985543100                                    000 


Q ss_pred             h-----------HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC------------cEEeccEEEEccCCCCC
Q 022896          180 K-----------AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG------------DTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ~-----------~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g------------~~~~~d~vv~a~G~~~~  236 (290)
                      .           +...+.+.+++.|++++.++.+.   .+++.+.+.+.+|            .++.+|.+|+|+|.+|.
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A           85 MLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence            0           11123456677899999888653   3444566655455            57999999999999875


Q ss_pred             c
Q 022896          237 S  237 (290)
Q Consensus       237 ~  237 (290)
                      .
T Consensus       162 ~  162 (482)
T 1ojt_A          162 K  162 (482)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.95  E-value=9.3e-05  Score=64.12  Aligned_cols=95  Identities=23%  Similarity=0.269  Sum_probs=69.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------------------------C---------C
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------------------------I---------G  178 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------------------------~---------~  178 (290)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++.+.+...                            +         +
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  102 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQ--LGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLN  102 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccC
Confidence            3689999999999999999987  48899999986543210                            0         0


Q ss_pred             ------------hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCC
Q 022896          179 ------------PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ------------~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~  235 (290)
                                  ..+...+...+++.+++++.+...   ..+.+.+.+...+|  .++.+|.+|+|||..|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~---~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p  170 (491)
T 3urh_A          103 LQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGK---VLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV  170 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE---ECSSSEEEEECTTSCEEEEECSEEEECCCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE---EecCCEEEEEeCCCceEEEEeCEEEEccCCCC
Confidence                        011122445567789999988755   24556677887777  4799999999999876

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.94  E-value=5.5e-06  Score=72.82  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      ..+|++|||||++|+.+|.+|.+ |.+|+|+|++...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            46999999999999999999976 9999999998753

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.93  E-value=8e-06  Score=70.10  Aligned_cols=92  Identities=14%  Similarity=0.043  Sum_probs=68.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--------ccC--ChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------EFI--GPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      ...+++|||+|+.|+.+|..|....++.+|+++++.+.+.        +.+  ...+...+.+.+++.|++++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3579999999999999999998763448999999887653        111  23456667788888999999987662 


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                           ..  +.+.+ ..+.+|.+|+|||..+
T Consensus        84 -----~~--V~~~~-~~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 -----RD--VTVQE-LQDAYHAVVLSYGAED  106 (460)
T ss_dssp             -----TT--BCHHH-HHHHSSEEEECCCCCE
T ss_pred             -----eE--EEecc-ceEEcCEEEEecCcCC
Confidence                 11  22223 2478999999999874

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.92  E-value=0.0001  Score=63.61  Aligned_cols=97  Identities=23%  Similarity=0.228  Sum_probs=69.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------------------------------------
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------------------------------  175 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------------------------------------  175 (290)
                      ..+++|||+|+.|+.+|..+..  .+.+|+++++.+ +..                                        
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   87 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAAS--YGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKE   87 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGG
T ss_pred             cCCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccc
Confidence            3589999999999999999987  488999999864 100                                        


Q ss_pred             --cCCh------------hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCch
Q 022896          176 --FIGP------------KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       176 --~~~~------------~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~  238 (290)
                        ..+.            .+...+.+.+++.|++++.++ ++.+  +.+.+.+.+.+|+  ++.+|.+|+|+|..|..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  163 (479)
T 2hqm_A           88 HLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN--KDGNVEVQKRDNTTEVYSANHILVATGGKAIFP  163 (479)
T ss_dssp             GCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC--TTSCEEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe--eCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence              0000            111223455677899999885 4333  4455777777776  799999999999887654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.92  E-value=0.00012  Score=61.64  Aligned_cols=96  Identities=18%  Similarity=0.148  Sum_probs=69.0

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-------CChhHH----------------------------
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IGPKAG----------------------------  182 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-------~~~~~~----------------------------  182 (290)
                      +|+|||+|+.|+-+|..|..  .+.+|+++++.+.+...       +.+...                            
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~--~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~   80 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRK--HGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRF   80 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEE
T ss_pred             EEEEECcCHHHHHHHHHHHh--CCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeE
Confidence            79999999999999999997  48999999876543110       001000                            


Q ss_pred             -------------------------------HHHHHHHHh-CCcEEEeCceEeecccCCC-ceeEEcCCCcEEeccEEEE
Q 022896          183 -------------------------------DKTRDWLIS-KKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFL  229 (290)
Q Consensus       183 -------------------------------~~~~~~~~~-~gi~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~  229 (290)
                                                     ..+.+.|.+ .+.++++++.+++++..++ .+.+.+.||+++++|.||-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVg  160 (412)
T 4hb9_A           81 YNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVG  160 (412)
T ss_dssp             ECTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEE
T ss_pred             ecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEE
Confidence                                           113333322 2456888999988875444 5889999999999999999


Q ss_pred             ccCCCC
Q 022896          230 CTGKPV  235 (290)
Q Consensus       230 a~G~~~  235 (290)
                      |-|..+
T Consensus       161 ADG~~S  166 (412)
T 4hb9_A          161 ADGSNS  166 (412)
T ss_dssp             CCCTTC
T ss_pred             CCCCCc
Confidence            999865

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.91  E-value=2.8e-05  Score=67.29  Aligned_cols=94  Identities=18%  Similarity=0.286  Sum_probs=63.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEEe-eeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVA-SPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~~~   88 (290)
                      ..+++|||+|+.|+.+|..|++ |.+|+++++.+.+....       .+..    ...+.+.+  .+++++. ..+..+.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~----~~~l~~~l~~~Gv~i~~~~~V~~i~  259 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNF-------DYDL----RQLLNDAMVAKGISIIYEATVSQVQ  259 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHH----HHHHHHHHHHHTCEEESSCCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccccc-------CHHH----HHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            5789999999999999999976 99999999987543110       0111    11111111  1344443 4566665


Q ss_pred             cc----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           89 EN----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        89 ~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      ..    .+.+.++.++.+|.|++|+|..|....
T Consensus       260 ~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~  292 (484)
T 3o0h_A          260 STENCYNVVLTNGQTICADRVMLATGRVPNTTG  292 (484)
T ss_dssp             ECSSSEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred             eeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCC
Confidence            43    477778888999999999999876553

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.90  E-value=5.3e-06  Score=71.16  Aligned_cols=90  Identities=12%  Similarity=-0.004  Sum_probs=67.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhh-hCC----CCeEEEEecCccccc--------c--CChhHHHHHHHHHHhCCcEEEeCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAV-DFP----EKKVTLVHKGSRLLE--------F--IGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~-~~~----~~~v~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      .++++|||+|+.|+.+|..|.. ..+    +.+|+++++.+.+..        .  ...++...+.+.+++.|++++.++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999986 433    789999998865432        1  123566777788888999999885


Q ss_pred             eEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896          201 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      .+      +..  +.+.++ .+.+|.||+|+|..
T Consensus        83 ~v------~~~--v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV------GEH--VQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB------TTT--BCHHHH-HHHSSEEEECCCCC
T ss_pred             EE------CCE--EEECCC-eEeCCEEEEeeCCC
Confidence            43      112  333344 47899999999996

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.88  E-value=4.4e-06  Score=74.79  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C--------CcEEEEcCCC-Cc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S--------ADVTLIDPKE-YF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g--------~~v~vie~~~-~~   47 (290)
                      .++|+|||||++||++|++|++ |        ++|+|||+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            4789999999999999999975 7        9999999998 77

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.87  E-value=1.8e-05  Score=69.14  Aligned_cols=92  Identities=18%  Similarity=0.255  Sum_probs=61.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeeec
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINITE   89 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~~   89 (290)
                      .+++|||||..|+.+|..|++ |.+|+++++.+.+....       .+..    ...+.+.+  .+++++ ...+..+..
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~-------~~~~----~~~l~~~l~~~GV~i~~~~~V~~i~~  283 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIK-------DNET----RAYVLDRMKEQGMEIISGSNVTRIEE  283 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCC-------SHHH----HHHHHHHHHHTTCEEESSCEEEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccc-------cHHH----HHHHHHHHHhCCcEEEECCEEEEEEE
Confidence            889999999999999999976 99999999987543210       0111    11111111  134443 335555543


Q ss_pred             --c------eEEecCce-EEeccEEEEccCCCCCCC
Q 022896           90 --N------EVLTAEGR-RVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        90 --~------~v~~~~~~-~~~~~~vi~a~G~~~~~p  116 (290)
                        +      .+.+.+|. ++.+|.|++|+|..|+.+
T Consensus       284 ~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          284 DANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             CTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred             cCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence              1      25566776 899999999999998754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.85  E-value=6.7e-05  Score=64.60  Aligned_cols=98  Identities=20%  Similarity=0.246  Sum_probs=67.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc--------------------------cccc---C-------C-
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR--------------------------LLEF---I-------G-  178 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~--------------------------~~~~---~-------~-  178 (290)
                      ..+++|||+|..|+.+|..+.+  .+.+|+++++...                          ..+.   +       + 
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR   81 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence            4689999999999999999987  4789999998731                          0000   0       0 


Q ss_pred             hhHHH-------H-----HHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCCch
Q 022896          179 PKAGD-------K-----TRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       179 ~~~~~-------~-----~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~  238 (290)
                      ..+..       .     ..+.+++. |++++.+. ++.+  +.+.+.+.+.+|  +++.+|.+|+|||.+|..+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  153 (467)
T 1zk7_A           82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFK--DDQSLTVRLNEGGERVVMFDRCLVATGASPAVP  153 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEE--ETTEEEEEETTSSEEEEECSEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEc--cCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCC
Confidence            11111       1     12345556 99998874 4333  345677777777  6799999999999887644

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.84  E-value=8.8e-06  Score=71.24  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~   47 (290)
                      ..+|+||||||++|+.+|.+|.++.+|+|+|++...
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCc
Confidence            359999999999999999999889999999998764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.83  E-value=2.4e-05  Score=67.85  Aligned_cols=93  Identities=19%  Similarity=0.269  Sum_probs=62.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-c---CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAI   85 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~   85 (290)
                      ..+++|||||..|+.+|..|+ .   |.+|+++++.+.+....       .+..    ...+.+.+  .+++++ ...+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~-------d~~~----~~~l~~~l~~~GV~i~~~~~v~  259 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGF-------DETI----REEVTKQLTANGIEIMTNENPA  259 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTS-------CHHH----HHHHHHHHHHTTCEEEESCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccccc-------CHHH----HHHHHHHHHhCCCEEEeCCEEE
Confidence            478999999999999999995 4   89999999987643110       1111    11111111  134443 33556


Q ss_pred             eeecc-----eEEecCceEEeccEEEEccCCCCCCC
Q 022896           86 NITEN-----EVLTAEGRRVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        86 ~~~~~-----~v~~~~~~~~~~~~vi~a~G~~~~~p  116 (290)
                      .+...     .+.+.+|.++.+|.|++|+|.+|+.+
T Consensus       260 ~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          260 KVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred             EEEEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence            66432     46677888899999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.82  E-value=1.2e-05  Score=70.80  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~   45 (290)
                      ..||+||||||.||+.+|.+|.+  +.+|+|||++.
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            46999999999999999999985  79999999987

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.82  E-value=5.2e-05  Score=68.32  Aligned_cols=87  Identities=24%  Similarity=0.267  Sum_probs=65.2

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------CC-----hhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IG-----PKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      .++++|||+|+.|+.+|..+..  .+.+|+++++.+.+...      ..     .++...+.+.+++.|++++.++.++.
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH
Confidence            4789999999999999999986  48899999987654221      11     12344566777888999999986632


Q ss_pred             cccCCCceeEEcCCCcEE-eccEEEEccCCCCCchh
Q 022896          205 DSVSEGSDTYLTSTGDTI-NADCHFLCTGKPVGSDW  239 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~-~~d~vv~a~G~~~~~~~  239 (290)
                      .               .+ .+|.+|+|||..|..+-
T Consensus       451 ~---------------~~~~~d~lviAtG~~p~~~~  471 (671)
T 1ps9_A          451 D---------------QLQAFDETILASGIVPRTPP  471 (671)
T ss_dssp             S---------------SSCCSSEEEECCCEEECCCC
T ss_pred             H---------------HhhcCCEEEEccCCCcCCCC
Confidence            1               13 89999999999876543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.79  E-value=1.4e-05  Score=70.32  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (290)
                      ..||+||||||.||+.+|.+|.+ + .+|+|||++..
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35999999999999999999986 4 79999999876

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.78  E-value=8.8e-05  Score=64.05  Aligned_cols=96  Identities=18%  Similarity=0.234  Sum_probs=67.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------------------------------------CC-
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------------------------------------IG-  178 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------------------------------------~~-  178 (290)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++.. +...                                    ++ 
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~--~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAE--LGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW   96 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            4689999999999999999997  488999999663 2100                                    00 


Q ss_pred             -----------hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896          179 -----------PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       179 -----------~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                                 ..+...+...++..|++++.+...   ..+.....+. .+++++.+|.+|+|||..|..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~---~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p  163 (478)
T 3dk9_A           97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAA---FTSDPKPTIE-VSGKKYTAPHILIATGGMPSTP  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEE---ECSCSSCEEE-ETTEEEECSCEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEE---EeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCC
Confidence                       012233455667789999988643   2233334455 4667899999999999877554

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.78  E-value=7.2e-05  Score=65.26  Aligned_cols=97  Identities=22%  Similarity=0.116  Sum_probs=66.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--------cccc---------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--------RLLE---------------------------------  175 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~--------~~~~---------------------------------  175 (290)
                      .+++|||+|+.|+.+|..+.+  .+.+|+++++.+        .+..                                 
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            589999999999999999987  488999999743        1100                                 


Q ss_pred             ----cCCh------------hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCc
Q 022896          176 ----FIGP------------KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGS  237 (290)
Q Consensus       176 ----~~~~------------~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~  237 (290)
                          ..+.            .+...+...++..+++++.+...   ..+...+.+...+|+  ++.+|.+|+|||..|..
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~---~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQ---FIGPHRIKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEE---EEETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE---EeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence                0000            11112234566789999877532   234455777777774  79999999999988765


Q ss_pred             h
Q 022896          238 D  238 (290)
Q Consensus       238 ~  238 (290)
                      +
T Consensus       188 p  188 (519)
T 3qfa_A          188 L  188 (519)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.78  E-value=3.7e-05  Score=66.16  Aligned_cols=92  Identities=15%  Similarity=0.199  Sum_probs=61.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEEe-eeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVA-SPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~~~   88 (290)
                      ..+++|||+|+.|+.+|..|.+ |.+|+++++.+.+....       .+..    ...+.+.+  .+++++. ..+..+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~-------~~~~----~~~l~~~l~~~Gv~i~~~~~v~~i~  238 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRF-------DQDM----RRGLHAAMEEKGIRILCEDIIQSVS  238 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHH----HHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccccc-------CHHH----HHHHHHHHHHCCCEEECCCEEEEEE
Confidence            5789999999999999999976 99999999987543110       0111    11111111  1344443 4566665


Q ss_pred             cc-----eEE-ecCceEEeccEEEEccCCCCCCC
Q 022896           89 EN-----EVL-TAEGRRVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        89 ~~-----~v~-~~~~~~~~~~~vi~a~G~~~~~p  116 (290)
                      ..     .+. +.++. +.+|.+++|+|..|+.+
T Consensus       239 ~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~  271 (463)
T 4dna_A          239 ADADGRRVATTMKHGE-IVADQVMLALGRMPNTN  271 (463)
T ss_dssp             ECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred             EcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence            43     366 67776 99999999999987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.78  E-value=7.3e-05  Score=64.52  Aligned_cols=95  Identities=15%  Similarity=0.152  Sum_probs=68.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc------c----------------------------ccC-----
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL------L----------------------------EFI-----  177 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~------~----------------------------~~~-----  177 (290)
                      .+++|||+|+.|+.+|..+.+.  +.+|+++++.+.+      .                            ..+     
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            5799999999999999999974  8899999987511      0                            000     


Q ss_pred             ----C------------hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCC
Q 022896          178 ----G------------PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVG  236 (290)
Q Consensus       178 ----~------------~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~  236 (290)
                          +            ..+...+...+++.|++++.+....   .+.+.+.+...+|  .++.+|.+|+|||..|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~  155 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL---LAGKKVEVTAADGSSQVLDTENVILASGSKPV  155 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE---CSTTCEEEECTTSCEEEECCSCEEECCCEEEC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEEEEEcCCCceEEEEcCEEEEcCCCCCC
Confidence                0            0112223355667799999887552   4556678887777  47999999999998875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.76  E-value=1.8e-05  Score=74.61  Aligned_cols=92  Identities=14%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i  205 (290)
                      +++|+|||+|+.|+.+|..|...  +. +|+++++.+.+..         ....+......+.+++.|++++.++.+.. 
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~--G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE-  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST-
T ss_pred             CCEEEEECccHHHHHHHHHHHhc--CCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc-
Confidence            57899999999999999999974  66 7999998765432         12334555566788899999999987731 


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCC-CCC
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGK-PVG  236 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~-~~~  236 (290)
                          .  .+.+.++.++.+|.||+|||. .|.
T Consensus       264 ----~--~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 ----N--EITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             ----T--SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             ----c--eEEhhhcCccCCCEEEEecCCCCCC
Confidence                1  123334445789999999998 354

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.70  E-value=0.00014  Score=68.09  Aligned_cols=101  Identities=18%  Similarity=0.077  Sum_probs=69.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------C----ChhHHHHHHHHHHhC-CcEEEeCceE
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------I----GPKAGDKTRDWLISK-KVDVKLGERV  202 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~-gi~~~~~~~v  202 (290)
                      ..+++|||+|+.|+.+|..+..  .+.+|+++++.+.+...        +    ..++...+.+.+.+. +++++.++.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V  205 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASR--SGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTV  205 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence            4689999999999999999987  47899999987654211        1    113334455556664 9999999988


Q ss_pred             eecccCCC---------ceeEEc------CCCcEEeccEEEEccCCCCCch
Q 022896          203 NLDSVSEG---------SDTYLT------STGDTINADCHFLCTGKPVGSD  238 (290)
Q Consensus       203 ~~i~~~~~---------~~~v~~------~~g~~~~~d~vv~a~G~~~~~~  238 (290)
                      ..+.....         .+.+..      .++.++.+|.+|+|||..|..+
T Consensus       206 ~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~  256 (965)
T 2gag_A          206 FGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPI  256 (965)
T ss_dssp             EEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCC
T ss_pred             EeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCC
Confidence            76653221         111111      1123689999999999977543

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.69  E-value=0.00049  Score=55.83  Aligned_cols=100  Identities=18%  Similarity=0.147  Sum_probs=70.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------C
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------I  177 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~  177 (290)
                      ..+++|||+|..|+.+|..|....++.+|.++++.+.....                                      .
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~  144 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH  144 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence            34899999999999999999875458899999986543210                                      0


Q ss_pred             ChhHHHHHHHHHHh-CCcEEEeCceEeecccCC----C--c-eeEEc------C--------CCcEEec-----------
Q 022896          178 GPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSE----G--S-DTYLT------S--------TGDTINA-----------  224 (290)
Q Consensus       178 ~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~----~--~-~~v~~------~--------~g~~~~~-----------  224 (290)
                      ...+...+.+.+.+ .|++++.++.++++..++    +  . ..+..      .        ++.++.+           
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~  224 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL  224 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred             hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence            12345556666776 499999999998887663    2  2 22221      1        3357899           


Q ss_pred             ----cEEEEccCCCC
Q 022896          225 ----DCHFLCTGKPV  235 (290)
Q Consensus       225 ----d~vv~a~G~~~  235 (290)
                          +.||.|+|...
T Consensus       225 ~~~~~~VV~ATG~~~  239 (326)
T 2gjc_A          225 SQKHGVILSTTGHDG  239 (326)
T ss_dssp             STTCCEEEECCCCC-
T ss_pred             cccCCEEEECcCCCc
Confidence                99999999764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.67  E-value=0.00019  Score=62.17  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEec--------Cccccc---------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK--------GSRLLE---------------------------------  175 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~--------~~~~~~---------------------------------  175 (290)
                      .+++|||+|+.|+.+|..+.+. .+.+|+++++        ...+..                                 
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASL-HKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             ccEEEECCCHHHHHHHHHHHHH-cCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            4799999999999999999861 3889999992        222211                                 


Q ss_pred             -----cCC-hh-----------HHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEc---CCC---cEEeccEEEEcc
Q 022896          176 -----FIG-PK-----------AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLT---STG---DTINADCHFLCT  231 (290)
Q Consensus       176 -----~~~-~~-----------~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~---~~g---~~~~~d~vv~a~  231 (290)
                           ..+ +.           +...+.+.+++. |++++.++ ++.+  +.+.+.+..   .+|   +++.+|.+|+||
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i--~~~~v~v~~~~~~~g~~~~~~~~d~lviAt  159 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQ--DNHTVLVRESADPNSAVLETLDTEYILLAT  159 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEE--ETTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEe--eCCEEEEEeeccCCCCceEEEEcCEEEEeC
Confidence                 000 01           112234445677 99999886 4333  334455543   356   689999999999


Q ss_pred             CCCCCch
Q 022896          232 GKPVGSD  238 (290)
Q Consensus       232 G~~~~~~  238 (290)
                      |..|..+
T Consensus       160 Gs~p~~p  166 (490)
T 1fec_A          160 GSWPQHL  166 (490)
T ss_dssp             CEEECCC
T ss_pred             CCCCCCC
Confidence            9887654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.66  E-value=0.00025  Score=61.38  Aligned_cols=97  Identities=23%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--------cccc---------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--------RLLE---------------------------------  175 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~--------~~~~---------------------------------  175 (290)
                      .+++|||+|+.|+.+|..+.+  .+.+|.++++.+        .+..                                 
T Consensus         7 ~DvvVIG~G~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            7 FDLLVIGGGSGGLACAKEAAQ--LGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHh--CCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            479999999999999999987  488999998521        1100                                 


Q ss_pred             ----cCCh------------hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCCc
Q 022896          176 ----FIGP------------KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGS  237 (290)
Q Consensus       176 ----~~~~------------~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~  237 (290)
                          ..+.            .+...+...++..+++++.+...   ..+.+.+.+.+.+|  .++.+|.+|+|||..|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKAS---FVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEE---ESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE---EccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence                0000            11112334566789999866532   23455677777777  479999999999988765


Q ss_pred             h
Q 022896          238 D  238 (290)
Q Consensus       238 ~  238 (290)
                      +
T Consensus       162 p  162 (488)
T 3dgz_A          162 P  162 (488)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.65  E-value=3.5e-05  Score=68.18  Aligned_cols=56  Identities=9%  Similarity=-0.102  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCC--Cc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS-DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~--~~-~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.++..|.++++++.|++|..++  +. ..+...+|+++.+|.||....+.|
T Consensus       379 ~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp  437 (650)
T 1vg0_A          379 ELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLS  437 (650)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcC
Confidence            789999999999999999999999998766  44 344557799999999999776654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.63  E-value=2.2e-05  Score=68.92  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~   47 (290)
                      .||+||||||.+|+.+|.+|.+  +.+|+|||++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999975  8999999998765

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.62  E-value=0.00015  Score=60.71  Aligned_cols=88  Identities=18%  Similarity=0.216  Sum_probs=66.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-----------------------cc-----------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----------------------EF-----------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-----------------------~~-----------------  176 (290)
                      .+|+|||+|..|+.+|..|..+.++.+|+++++.+.+.                       ..                 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            37999999999999999999755589999999765430                       00                 


Q ss_pred             ---------------CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          177 ---------------IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       177 ---------------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                                     ....+...+.+.+++.|++++++++|++++..           .++.+|.||.|.|..+
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S  143 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNH  143 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCc
Confidence                           01245667788888889999999999777642           1357899999999764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.61  E-value=3.3e-05  Score=67.14  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      .+|++|||+|++|+.+|.+|.+ +.+|+|+|++....
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            5899999999999999999976 99999999988544

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.58  E-value=5.9e-05  Score=68.20  Aligned_cols=87  Identities=20%  Similarity=0.209  Sum_probs=66.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------CChhHHHHHHHHHHhC-CcEEEeCceEe
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTRDWLISK-KVDVKLGERVN  203 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-gi~~~~~~~v~  203 (290)
                      .++|+|||+|+.|+.+|..|..+  +.+|+++++.+.+...           ....+...+.+.+++. |++++.++.++
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~--G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  468 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVR--GYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT  468 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC
T ss_pred             cceEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec
Confidence            47899999999999999999985  8899999987654321           1124566677778887 99999887652


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .            .+++++.+|.+|+|+|..|.
T Consensus       469 ~------------~~~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          469 G------------DDIVEFGFEHVITATGATWR  489 (690)
T ss_dssp             H------------HHHHHTTCCEEEECCCEEEC
T ss_pred             H------------HHHhhcCCCEEEEcCCCccc
Confidence            1            23346789999999998853

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.57  E-value=4.2e-05  Score=66.53  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      ..+|++|||+|++|+.+|.+|.+ +.+|+|+|++...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            46999999999999999999976 9999999998753

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.56  E-value=0.00024  Score=61.38  Aligned_cols=98  Identities=21%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---------cc-------------------------------c
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---------LL-------------------------------E  175 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---------~~-------------------------------~  175 (290)
                      ..+++|||+|+.|+.+|..+.+  .+.+|+++++.+.         +.                               -
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~   86 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVL--NGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW   86 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence            3589999999999999999987  4889999973100         00                               0


Q ss_pred             ------cCCh-h-----------HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc-EEeccEEEEccCCCCC
Q 022896          176 ------FIGP-K-----------AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPVG  236 (290)
Q Consensus       176 ------~~~~-~-----------~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~~  236 (290)
                            ..+. .           +...+...++..+++++.+...   ..+.+.+.+.+.+|+ ++.+|.+|+|||..|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~---~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~  163 (483)
T 3dgh_A           87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGS---FVDSHTLLAKLKSGERTITAQTFVIAVGGRPR  163 (483)
T ss_dssp             CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEE---EEETTEEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE---EccCCEEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence                  0010 0           1112234466789998876543   224455777777775 7999999999998876


Q ss_pred             ch
Q 022896          237 SD  238 (290)
Q Consensus       237 ~~  238 (290)
                      .+
T Consensus       164 ~p  165 (483)
T 3dgh_A          164 YP  165 (483)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.53  E-value=7e-05  Score=65.71  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~   48 (290)
                      ..+|++|||+|++|+.+|.+|.+  +.+|+|+|++....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~   50 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR   50 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCC
Confidence            46999999999999999999975  79999999997654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.45  E-value=8.1e-05  Score=65.89  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~   47 (290)
                      ..+|++|||+|++|+++|.+|.+  +.+|+|+|++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            46999999999999999999965  8999999998754

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.43  E-value=0.00069  Score=60.67  Aligned_cols=99  Identities=23%  Similarity=0.347  Sum_probs=71.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------------------------------------  174 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------------------------------------------  174 (290)
                      .+|+|||+|++|+-+|..|... .+.+|.++++.+...                                          
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~-~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~  111 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAF-PDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDP  111 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-TTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECT
T ss_pred             CcEEEECcCHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCC
Confidence            4799999999999999999851 377888887543210                                          


Q ss_pred             ---c-------------c--------C-ChhHHHHHHHHHHhCCc--EEEeCceEeecccCCC----ceeEEcC------
Q 022896          175 ---E-------------F--------I-GPKAGDKTRDWLISKKV--DVKLGERVNLDSVSEG----SDTYLTS------  217 (290)
Q Consensus       175 ---~-------------~--------~-~~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~~----~~~v~~~------  217 (290)
                         .             .        . ...+...+.+.+++.|+  ++++++++++++.+++    .+.+.+.      
T Consensus       112 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~  191 (639)
T 2dkh_A          112 GQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAH  191 (639)
T ss_dssp             TSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGG
T ss_pred             CCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccC
Confidence               0             0        0 11456677788888876  9999999999987652    4566543      


Q ss_pred             CC--cEEeccEEEEccCCCCC
Q 022896          218 TG--DTINADCHFLCTGKPVG  236 (290)
Q Consensus       218 ~g--~~~~~d~vv~a~G~~~~  236 (290)
                      +|  +++.+|.||.|.|....
T Consensus       192 ~G~~~~i~a~~vVgADG~~S~  212 (639)
T 2dkh_A          192 AGQIETVQARYVVGCDGARSN  212 (639)
T ss_dssp             TTCEEEEEEEEEEECCCTTCH
T ss_pred             CCCeEEEEeCEEEECCCcchH
Confidence            45  47899999999998753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.41  E-value=0.00047  Score=61.25  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-cc-------ccc-------------------------------
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SR-------LLE-------------------------------  175 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~-~~-------~~~-------------------------------  175 (290)
                      ...+++|||+|+.|+.+|..+..  .+.+|+++++. +.       +..                               
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~--~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~  183 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAK--YGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGW  183 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccEEEECCCccHHHHHHHHHh--CCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCc
Confidence            34689999999999999999987  48899999862 11       100                               


Q ss_pred             cCCh--------hHHHH-----------HHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCC
Q 022896          176 FIGP--------KAGDK-----------TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKP  234 (290)
Q Consensus       176 ~~~~--------~~~~~-----------~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~  234 (290)
                      ...+        ++.+.           ....++..+++++.+.. +.  .+...+.+...+|  .++.+|.+|+|||.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~--~~~~~v~v~~~~g~~~~~~~d~lviAtGs~  260 (598)
T 2x8g_A          184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKG-RL--ISPHEVQITDKNQKVSTITGNKIILATGER  260 (598)
T ss_dssp             CCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEE-EE--EETTEEEEECTTCCEEEEEEEEEEECCCEE
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EE--cCCCEEEEEeCCCCeEEEEeCEEEEeCCCC
Confidence            0000        11111           12235567888876542 11  2233455666667  468999999999988


Q ss_pred             CCch
Q 022896          235 VGSD  238 (290)
Q Consensus       235 ~~~~  238 (290)
                      |..+
T Consensus       261 p~~p  264 (598)
T 2x8g_A          261 PKYP  264 (598)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            7654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.35  E-value=0.003  Score=55.19  Aligned_cols=37  Identities=35%  Similarity=0.613  Sum_probs=31.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhC----------CCCeEEEEecCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDF----------PEKKVTLVHKGS  171 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~----------~~~~v~~~~~~~  171 (290)
                      ...+|+|||+|..|+-+|..|....          .+.+|+++++.+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            3578999999999999999998621          588999999764

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.31  E-value=0.00091  Score=57.58  Aligned_cols=54  Identities=13%  Similarity=-0.024  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEE--cCCCcEEeccEEEEccCCCCC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL--TSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~--~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      +...+.+.+++.|++++.++.+ ++..+++.+ .+.  ..+| ++.+|.||+|+|..+.
T Consensus       121 l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g-~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          121 IFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGL-VEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEE-ECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCC-eEEeeeEEECCCCCcc
Confidence            3455666667789999999999 887665543 233  2333 5789999999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.21  E-value=0.0002  Score=65.15  Aligned_cols=87  Identities=21%  Similarity=0.208  Sum_probs=56.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC---------C--hhHHHHHHHHHHh------CCcEEEe
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI---------G--PKAGDKTRDWLIS------KKVDVKL  198 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~------~gi~~~~  198 (290)
                      .++++|||+|+.|+.+|..|..  .+.+|+++++.+.+...+         .  ..+...+.+.++.      .++++..
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~--~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~  466 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALG  466 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECS
T ss_pred             CceEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEe
Confidence            4789999999999999999997  488999999877643211         0  1222223333332      2455543


Q ss_pred             CceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      ++.            +...++..+.+|.||+|||..|.
T Consensus       467 ~~~------------v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          467 QKP------------MTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             CCC------------CCHHHHHTSCCSEEEECCCEEEC
T ss_pred             CeE------------EehhhccccCCCEEEEcCCCCcc
Confidence            322            22234456889999999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.19  E-value=0.00039  Score=49.18  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+.+++|||+|..|..+|..|.+ |++|+++|+++.
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            3446789999999999999999975 999999999763

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.10  E-value=0.0028  Score=54.98  Aligned_cols=102  Identities=15%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhC------------CCCeEEEEecCcccccc----------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEF----------------------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~------------~~~~v~~~~~~~~~~~~----------------------------  176 (290)
                      ..|+|||+|++++.+|..|.+..            ......++++.+.+...                            
T Consensus        40 ~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~  119 (501)
T 4b63_A           40 HDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSF  119 (501)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTT
T ss_pred             CcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCcc
Confidence            46999999999999998886531            12345566665432100                            


Q ss_pred             ---------------------C--ChhHHHHHHHHHHhCCcEEEeCceEeecccCCC--------ceeEEcCCC-----c
Q 022896          177 ---------------------I--GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--------SDTYLTSTG-----D  220 (290)
Q Consensus       177 ---------------------~--~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~--------~~~v~~~~g-----~  220 (290)
                                           +  ..++...+....++.+..+.+++.|++++..+.        .+.|++.++     +
T Consensus       120 sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~  199 (501)
T 4b63_A          120 TFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEIS  199 (501)
T ss_dssp             SHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEE
T ss_pred             chHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEE
Confidence                                 0  113445555556666778999999998865332        255655433     3


Q ss_pred             EEeccEEEEccCCCCCch
Q 022896          221 TINADCHFLCTGKPVGSD  238 (290)
Q Consensus       221 ~~~~d~vv~a~G~~~~~~  238 (290)
                      ++.++.||+|+|..|..+
T Consensus       200 ~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          200 ARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             EEEEEEEEECCCCEECCC
T ss_pred             EEEeCEEEECcCCCCCCC
Confidence            688999999999877544

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.09  E-value=0.0026  Score=57.14  Aligned_cols=34  Identities=35%  Similarity=0.573  Sum_probs=25.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhh---CCCCeEEEEecC
Q 022896          137 RSILIVGGGPTGVELAGEIAVD---FPEKKVTLVHKG  170 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~---~~~~~v~~~~~~  170 (290)
                      .+|+|||+|+.|+-+|..|...   ..+.+|.++++.
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            3689999999999999888861   037788888754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.07  E-value=0.00046  Score=49.74  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=31.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....+++|||+|..|..+|..|.+ |++|+++|+++.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            345789999999999999999975 999999999753

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.00  E-value=0.0058  Score=55.79  Aligned_cols=35  Identities=31%  Similarity=0.592  Sum_probs=30.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      .+|+|||+|.+|+.+|..|...  +.+|+++++.+.+
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~  371 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNF--GIKVTVLEAKDRI  371 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCcEEEEecccce
Confidence            6899999999999999999874  7899999876543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.81  E-value=0.0009  Score=47.26  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +.+++|+|+|..|..+|..|.+ |++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999975 99999999965

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.77  E-value=0.0011  Score=46.60  Aligned_cols=33  Identities=33%  Similarity=0.456  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++++|||+|..|..+|..|.+ |++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999975 99999999865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.70  E-value=0.0011  Score=44.96  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~   45 (290)
                      +++++|+|+|..|..++..|.+ | ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            4689999999999999999965 8 8999999964

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.62  E-value=0.0023  Score=45.83  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +.+++|+|+|..|...|..|.+ |++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4689999999999999999975 99999999964

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.54  E-value=0.0021  Score=54.16  Aligned_cols=38  Identities=13%  Similarity=0.168  Sum_probs=31.7

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      .....++|.|||+|..|+..|..|++|++|+++|+++.
T Consensus        32 r~~~~mkIaVIGlG~mG~~lA~~La~G~~V~~~D~~~~   69 (432)
T 3pid_A           32 RGSEFMKITISGTGYVGLSNGVLIAQNHEVVALDIVQA   69 (432)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             cccCCCEEEEECcCHHHHHHHHHHHcCCeEEEEecCHH
Confidence            33446799999999999999999988999999998763

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.48  E-value=0.0034  Score=47.86  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..++|+|||||..|...|..|.+ |++|+|++++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            46899999999999999999976 99999999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.47  E-value=0.027  Score=50.11  Aligned_cols=56  Identities=9%  Similarity=-0.047  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEc---CCCc--EEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~~  235 (290)
                      .+...+.+.+++.|++++.++.++++..+++. ..+..   .+|+  .+.++.||+|+|-..
T Consensus       156 ~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          156 SLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            34455666667789999999999888765554 22322   4665  689999999999654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=96.34  E-value=0.0065  Score=52.51  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=35.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~   52 (290)
                      +||+|||||++||+||++|++ |++|+|+|+++.+|+...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence            799999999999999999976 999999999998886543

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.29  E-value=0.0022  Score=50.56  Aligned_cols=34  Identities=35%  Similarity=0.567  Sum_probs=30.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+.|+|||||..|+..|..|.+ |++|+|++++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            46889999999999999999976 99999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.27  E-value=0.0032  Score=44.30  Aligned_cols=33  Identities=36%  Similarity=0.475  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +.+++|+|+|..|..+|..|.+ |++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999975 99999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.21  E-value=0.0043  Score=50.65  Aligned_cols=38  Identities=26%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      |..+.++|+|||||..|.++|..|+. |+ +|+++|.++.
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            34445799999999999999999975 87 9999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.19  E-value=0.0044  Score=49.93  Aligned_cols=35  Identities=37%  Similarity=0.499  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35679999999999999999975 999999999753

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.18  E-value=0.021  Score=48.77  Aligned_cols=83  Identities=17%  Similarity=0.109  Sum_probs=59.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  214 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v  214 (290)
                      .++++.|+|.|.+|..+|..|.+  .+.+|+..+..+..        .....+.|++.|+++..+.....+.        
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~~~--------~~~~~~~L~~~gi~~~~g~~~~~~~--------   69 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKPFD--------ENPTAQSLLEEGIKVVCGSHPLELL--------   69 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSCGG--------GCHHHHHHHHTTCEEEESCCCGGGG--------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCccc--------CChHHHHHHhCCCEEEECCChHHhh--------
Confidence            57899999999999999998887  49999998876521        1123456778899988775421000        


Q ss_pred             EcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          215 LTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       215 ~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                         ++   .+|.||+++|..+..+.+.
T Consensus        70 ---~~---~~d~vv~spgi~~~~p~~~   90 (451)
T 3lk7_A           70 ---DE---DFCYMIKNPGIPYNNPMVK   90 (451)
T ss_dssp             ---GS---CEEEEEECTTSCTTSHHHH
T ss_pred             ---cC---CCCEEEECCcCCCCChhHH
Confidence               00   2799999999988766554

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.17  E-value=0.013  Score=51.23  Aligned_cols=49  Identities=14%  Similarity=-0.012  Sum_probs=34.7

Q ss_pred             HHHHh-CCcEEEeCceEeeccc-CCC------c-eeEEc---CCCc--EEeccEEEEccCCCC
Q 022896          187 DWLIS-KKVDVKLGERVNLDSV-SEG------S-DTYLT---STGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       187 ~~~~~-~gi~~~~~~~v~~i~~-~~~------~-~~v~~---~~g~--~~~~d~vv~a~G~~~  235 (290)
                      +.+++ .|++++.++.++++.. +++      . ..+..   .+|+  .+.++.||+|+|-..
T Consensus       146 ~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          146 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            34455 6899999999988876 333      3 23433   3565  689999999999654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.13  E-value=0.0032  Score=53.64  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .++|+|||.|.+|+++|..|++ |++|+++|.+..
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            4689999999999999999965 999999998765

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.13  E-value=0.0047  Score=51.44  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|+|||+|.+|+.+|..|+. |.+|+++|++..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5789999999999999999976 999999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.11  E-value=0.0039  Score=53.28  Aligned_cols=33  Identities=39%  Similarity=0.423  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++++|||.|.+|+++|..|++ |++|++.|++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            5789999999999999999975 99999999965

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.06  E-value=0.0064  Score=44.92  Aligned_cols=33  Identities=21%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-c-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~~~   45 (290)
                      ..+++|||+|..|..+|..|. . |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            468999999999999999996 5 99999999975

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.06  E-value=0.0049  Score=50.11  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++|+|||+|..|.+.|..|.+ |++|++++|++
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            3689999999999999999976 99999999975

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.04  E-value=0.004  Score=47.49  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++++|||+|..|..+|..|.+ |++|+++|+++.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            369999999999999999975 999999998653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.012  Score=47.82  Aligned_cols=39  Identities=28%  Similarity=0.473  Sum_probs=33.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ....|+|||+|+.|+.+|..|..++.+.+|+++++.+.+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            456899999999999999999876679999999987654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.02  E-value=0.0051  Score=50.78  Aligned_cols=34  Identities=26%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|+|||+|..|+.+|..|+. |.+|+++|++..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999976 999999999763

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.01  E-value=0.0075  Score=49.73  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      |....++|.|||+|.-|.+.|..|++ |++|+++++++.
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            33345799999999999999999976 999999999753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.93  E-value=0.028  Score=42.82  Aligned_cols=74  Identities=23%  Similarity=0.356  Sum_probs=51.0

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  214 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v  214 (290)
                      .+++++|||+|..|...+..|...  +.+|+++.+..          ...+.+..++.+++++...      ..+     
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~----------~~~l~~l~~~~~i~~i~~~------~~~-----   86 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTV----------SAEINEWEAKGQLRVKRKK------VGE-----   86 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSC----------CHHHHHHHHTTSCEEECSC------CCG-----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCC----------CHHHHHHHHcCCcEEEECC------CCH-----
Confidence            579999999999999999999874  88999988642          1224445556667765321      111     


Q ss_pred             EcCCCcEEeccEEEEccCCCC
Q 022896          215 LTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       215 ~~~~g~~~~~d~vv~a~G~~~  235 (290)
                          +.--.+|.||.||+...
T Consensus        87 ----~dL~~adLVIaAT~d~~  103 (223)
T 3dfz_A           87 ----EDLLNVFFIVVATNDQA  103 (223)
T ss_dssp             ----GGSSSCSEEEECCCCTH
T ss_pred             ----hHhCCCCEEEECCCCHH
Confidence                11124899999998764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.87  E-value=0.0058  Score=49.45  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+++.|||+|..|.+.|..|.+ |++|++++|++
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            3689999999999999999976 89999999965

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.83  E-value=0.006  Score=49.28  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||||.-|...|..++. |++|+++|.++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4689999999999999999875 999999998763

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.83  E-value=0.0085  Score=48.07  Aligned_cols=34  Identities=24%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .++|.|||.|..|...|..|.+ |++|+++|+++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5789999999999999999976 999999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.63  E-value=0.0092  Score=48.40  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      .++|+|||+|..|.+.|..|.. |+  +|+++|+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999975 77  999999975

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.62  E-value=0.0087  Score=42.28  Aligned_cols=33  Identities=18%  Similarity=0.411  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+++|||+|..|..+|..|.. |.+|++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            6789999999999999999975 88899999865

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=95.60  E-value=0.0061  Score=51.80  Aligned_cols=44  Identities=18%  Similarity=0.376  Sum_probs=38.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR   55 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~   55 (290)
                      ..+|++|||||++|+++|..|++ |.+|+|+|+++.+|+.+....
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~   49 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT   49 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccc
Confidence            35899999999999999999976 999999999999887765443

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.59  E-value=0.0082  Score=48.12  Aligned_cols=33  Identities=33%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++++|||+|..|.+.|..|.+ |++|++++|+.
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            3689999999999999999976 99999999975

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.54  E-value=0.0086  Score=48.55  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=31.8

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCC
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~   45 (290)
                      ..+.++|.|||.|..|.+.|..|.+ | ++|+++|+++
T Consensus        21 ~~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           21 QSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             HTSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            3456789999999999999999976 9 9999999975

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.53  E-value=0.011  Score=47.76  Aligned_cols=37  Identities=19%  Similarity=0.175  Sum_probs=32.4

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+++|.|||.|..|...|..|.+ |++|+++|+++.
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3446889999999999999999975 999999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.52  E-value=0.012  Score=46.82  Aligned_cols=34  Identities=35%  Similarity=0.378  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|.-|.+.|..|++ |++|+++|+++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4689999999999999999975 999999999763

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.46  E-value=0.014  Score=47.40  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      .++|.|||+|..|.+.|..|.. |+ +|+++|+++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            4689999999999999999975 87 9999999763

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.46  E-value=0.011  Score=49.50  Aligned_cols=34  Identities=32%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|+|||+|.+|+.+|..|+. |.+|+++|++..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5789999999999999999975 999999999764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.46  E-value=0.013  Score=47.32  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      .++|.|||+|..|.+.|..|++ |+  +|+++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            4789999999999999999975 88  999999976

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.45  E-value=0.011  Score=48.03  Aligned_cols=34  Identities=26%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHH-HHHHhc-cCCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~-~A~~L~-~g~~v~vie~~~~   46 (290)
                      .+++.|||.|.+|++ +|..|. +|++|++.|++..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            578999999999997 777775 5999999999764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.45  E-value=0.011  Score=47.67  Aligned_cols=32  Identities=34%  Similarity=0.492  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++|.|||+|..|.+.|..|.+ |++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            589999999999999999975 99999999865

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.43  E-value=0.065  Score=43.56  Aligned_cols=81  Identities=20%  Similarity=0.078  Sum_probs=57.3

Q ss_pred             cCCeEEEEcCchhHHH-HHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee
Q 022896          135 SARSILIVGGGPTGVE-LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  213 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~-~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~  213 (290)
                      ..+++.++|-|.+|+. +|..|.+  .+.+|+..+..+..      .    ..+.+++.|++++.+.....+..      
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~~~------~----~~~~L~~~gi~v~~g~~~~~l~~------   64 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKMYP------P----MSTQLEALGIDVYEGFDAAQLDE------   64 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSCCT------T----HHHHHHHTTCEEEESCCGGGGGS------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCCCc------H----HHHHHHhCCCEEECCCCHHHcCC------
Confidence            3578999999999997 7777776  49999998876531      1    23457778999886643211100      


Q ss_pred             EEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          214 YLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       214 v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                              ..+|.||.++|..+..+.+.
T Consensus        65 --------~~~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A           65 --------FKADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             --------CCCSEEEECTTCCTTCHHHH
T ss_pred             --------CCCCEEEECCCcCCCCHHHH
Confidence                    24899999999988766554

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.34  E-value=0.013  Score=49.94  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=30.2

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|.|||+|..|+..|..|++ |++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            689999999999999999976 999999999863

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.34  E-value=0.015  Score=48.57  Aligned_cols=35  Identities=31%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+|+|||+|.+|+.+|..|+. |.+|+++|++..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46889999999999999999975 999999998764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.28  E-value=0.014  Score=46.41  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +|.|||+|..|.+.|..|.+ |++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            69999999999999999975 999999999764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.27  E-value=0.015  Score=48.07  Aligned_cols=34  Identities=35%  Similarity=0.500  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ...+|+|+|||.+|+++|..|.. |. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            46899999999999999999975 88 999999974

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.27  E-value=0.017  Score=46.58  Aligned_cols=33  Identities=33%  Similarity=0.573  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (290)
                      +++++|||+|..|.+.|..|..|++|++++|++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~~g~~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHhcCCceEEEECCH
Confidence            468999999999999999998889999999975

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.26  E-value=0.014  Score=48.22  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +++|+|||||..|..+|+.+++ |++|+++|+++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4789999999999999999987 999999998764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.26  E-value=0.017  Score=43.76  Aligned_cols=34  Identities=18%  Similarity=0.427  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+++.|||+|..|.+.|..|.+ |++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5789999999999999999975 999999998764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=95.22  E-value=0.12  Score=46.18  Aligned_cols=54  Identities=7%  Similarity=-0.106  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhC-Cc-EEEeCceEeecccCCC---c-eeE---EcCCCc--EEeccEEEEccCCCC
Q 022896          182 GDKTRDWLISK-KV-DVKLGERVNLDSVSEG---S-DTY---LTSTGD--TINADCHFLCTGKPV  235 (290)
Q Consensus       182 ~~~~~~~~~~~-gi-~~~~~~~v~~i~~~~~---~-~~v---~~~~g~--~~~~d~vv~a~G~~~  235 (290)
                      ...+.+.+++. |+ +++.++.++++..+++   . ..+   ...+|+  .+.++.||+|+|-..
T Consensus       154 ~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          154 KPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             HHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            34455556666 99 9999999998876655   4 222   235665  689999999999654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.22  E-value=0.019  Score=44.87  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ..|+|||+|++|+.+|..|.+  .+.+|+++++.+.+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~--~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCC
Confidence            369999999999999999997  48999999987654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.20  E-value=0.018  Score=46.59  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|..|...|..|.+ |++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            4789999999999999999975 999999998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.16  E-value=0.019  Score=46.98  Aligned_cols=31  Identities=16%  Similarity=0.522  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (290)
                      ++|.|||+|..|.+.|..|.+ |++|++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            689999999999999999976 9999999985

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.14  E-value=0.018  Score=46.63  Aligned_cols=34  Identities=26%  Similarity=0.517  Sum_probs=28.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      ++.+|+|||+|..|.++|..|.. +.  ++.++|.++
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            35799999999999999999975 55  899999875

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.09  E-value=0.022  Score=48.64  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=38.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~   53 (290)
                      ..+||+|||||++||+||.+|++ |++|+|+|+++.+|+....
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            45899999999999999999986 9999999999999987654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.08  E-value=0.02  Score=47.42  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=30.4

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCC
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (290)
                      +...+++|+|+|||..|-.+|.+|++.++|++.+++.
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~   48 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNN   48 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCH
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCH
Confidence            4455789999999999999999999889999998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.07  E-value=0.018  Score=47.40  Aligned_cols=33  Identities=36%  Similarity=0.404  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPK   44 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~   44 (290)
                      ...+|+|+|||.+|..+|..|.. |. +|+++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            46899999999999999999975 87 89999997

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.05  E-value=0.021  Score=46.51  Aligned_cols=34  Identities=35%  Similarity=0.441  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      +.+|.|||||..|.+.|..|+. |+ +|+++|.++.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            4689999999999999999975 77 8999999764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.04  E-value=0.018  Score=49.49  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++|.|||+|..|+..|..|++ |++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4899999999999999999976 99999999875

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.01  E-value=0.022  Score=48.17  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.+.++.|||.|..||..|..|++ |++|+.+|-++
T Consensus        18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           18 GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             TCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            3456899999999999999999985 99999999775

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.01  E-value=0.022  Score=46.18  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      ...+|.|||+|..|.++|..|.. ++  +++++|.++
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            35789999999999999999975 65  899999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.00  E-value=0.018  Score=47.64  Aligned_cols=31  Identities=29%  Similarity=0.421  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +|.|||+|..|.+.|..|.+ |++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999976 89999999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.97  E-value=0.021  Score=46.07  Aligned_cols=34  Identities=41%  Similarity=0.546  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ...+|.|||+|..|.++|..|.. ++ +++++|.++
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            35789999999999999999975 88 999999973

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.93  E-value=0.024  Score=45.97  Aligned_cols=34  Identities=26%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ..+|.|||||..|.++|..|+. |+ +|.++|.++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            4689999999999999999974 76 8999998763

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.93  E-value=0.022  Score=47.95  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|+|||.|..|..+|..|.+ |++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4679999999999999999975 999999999874

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.91  E-value=0.022  Score=44.34  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ..+|+|||+|-.|..+|..|.+ |. +++|+|++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            4789999999999999999987 85 8999999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.85  E-value=0.025  Score=44.84  Aligned_cols=34  Identities=9%  Similarity=0.153  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++++|+|.|||..|-.++.+|.+ |++|+++.|+.
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            35789999999999999999965 99999999865

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.83  E-value=0.024  Score=45.61  Aligned_cols=34  Identities=21%  Similarity=0.069  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .++|.|||.|..|...|..|.+ |++|+++|+++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            4789999999999999999975 999999999763

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.82  E-value=0.021  Score=47.25  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+|+|+|+|.+|+.++..|+. |.+|+++|++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3789999999999999999975 99999999975

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.79  E-value=0.024  Score=46.73  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++|.|||+|..|...|..|.+ |++|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            689999999999999999975 99999999865

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.74  E-value=0.02  Score=47.61  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-------CcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-------ADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-------~~v~vie~~~~   46 (290)
                      +++|.|||+|..|.+.|..|.+ |       ++|+++++++.
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            4689999999999999999975 8       99999999765

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.71  E-value=0.027  Score=45.40  Aligned_cols=33  Identities=36%  Similarity=0.519  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ++|.|||||..|.+.|..|.. |+ ++.++|.++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~   37 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   37 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCcc
Confidence            689999999999999999964 65 8999998753

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.70  E-value=0.029  Score=47.11  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHhccCCcEEEEcCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (290)
                      +|.|||+|..|+..|..|.+|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhCCCEEEEEECCH
Confidence            6999999999999999997799999999875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.70  E-value=0.025  Score=45.60  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~   46 (290)
                      ++|.|||+|..|.+.|..|+.   +++|+++|+++.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            379999999999999999964   789999999864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.65  E-value=0.02  Score=44.06  Aligned_cols=33  Identities=15%  Similarity=0.182  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+++|+|+|..|...|..|.+ |+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            5789999999999999999975 88 999998753

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.63  E-value=0.027  Score=45.35  Aligned_cols=32  Identities=34%  Similarity=0.558  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      ++|+|||+|..|.+.|..|+. |+  +|.++|.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            379999999999999999975 77  899999975

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.55  E-value=0.026  Score=44.92  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|.|||.|..|...|..|.+ |++|+++|+++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            579999999999999999976 999999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.54  E-value=0.029  Score=46.47  Aligned_cols=33  Identities=36%  Similarity=0.520  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...|+|+|+|..|..+|..|+. |++|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789999999999999999975 99999999865

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.52  E-value=0.03  Score=46.55  Aligned_cols=34  Identities=38%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...+|+|||+|..|..+|..|+. |++|+++|++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            35789999999999999999975 99999999865

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.50  E-value=0.024  Score=48.48  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++|+|||+|.+|...|..|.+ |++|+|++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            5789999999999999999975 99999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.44  E-value=0.033  Score=47.30  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..++.|||.|..|+..|..|++ |++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999976 999999999875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.43  E-value=0.031  Score=44.52  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|.|||.|..|...|..|.+ |++|+++|+++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            579999999999999999975 999999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.43  E-value=0.044  Score=44.11  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+|.|||.|..|...|..|.+ |++|+++|+++.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35789999999999999999975 999999999763

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.42  E-value=0.038  Score=44.00  Aligned_cols=33  Identities=18%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++|.|||+ |..|.+.|..|.+ |++|+++++++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            468999999 9999999999975 89999999865

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.40  E-value=0.036  Score=42.08  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+++.|||+|..|.+.|..|.+ |++|++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999975 89999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.40  E-value=0.034  Score=45.81  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...++|.|||.|..|...|..|.+ |++|+++|+++.
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            335799999999999999999975 999999999763

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.39  E-value=0.041  Score=47.07  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|..|...|..|.+ |++|+++|+++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4679999999999999999976 999999998763

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.38  E-value=0.034  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..++|.|||+|..|.+.|..|.+ |++|+++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            46889999999999999999975 999999998753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.37  E-value=0.046  Score=46.72  Aligned_cols=36  Identities=31%  Similarity=0.531  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      ....+++|+|||-.|..+|..|.++++|.++|++..
T Consensus       233 ~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~  268 (461)
T 4g65_A          233 KPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQ  268 (461)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHH
T ss_pred             ccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHH
Confidence            345789999999999999999988899999999764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.37  E-value=0.034  Score=45.12  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..++|.|||.|..|...|..|.+ |++|+++|+++.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            34689999999999999999975 999999999763

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.37  E-value=0.039  Score=46.60  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=31.8

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....++|+|+|+|..|..++..+++ |++|.++|.++.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            3346789999999999999999987 999999997654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.36  E-value=0.034  Score=45.38  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=30.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +..++.|||+|.-|.+.|..|.+ |++|+++++++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            35889999999999999999975 99999999974

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.32  E-value=0.038  Score=44.33  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~~   46 (290)
                      ..+|.|||||..|.+.|+.|.. ++  ++.++|.++.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            4789999999999999999864 77  8999999764

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.32  E-value=0.055  Score=43.35  Aligned_cols=35  Identities=23%  Similarity=0.544  Sum_probs=30.7

Q ss_pred             CCCcEEEEc-CChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIG-GGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIG-aG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +..+|.||| +|..|.+.|..|++ |++|+++++++.
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            346899999 99999999999976 999999998763

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.31  E-value=0.04  Score=46.82  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|.-|.+.|..|++ |++|+++|+++.
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4789999999999999999975 999999999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.31  E-value=0.023  Score=43.32  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEE-EcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTL-IDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~v-ie~~~~   46 (290)
                      ++++.|||+|..|.+.|..|.+ |++|++ +++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            4789999999999999999975 999999 888754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=94.27  E-value=0.035  Score=47.60  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=35.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCCcccchhh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEYFEITWAS   53 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~~~~~~~~   53 (290)
                      .+||+|||||++|+++|++|++ |. +|+|+|+++.+|+.+..
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~   46 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK   46 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence            5899999999999999999976 88 89999999988876543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.26  E-value=0.043  Score=43.14  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .++++|||+|-+|-++|+.|.+ |.+|+|+.|+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999975 899999999764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.24  E-value=0.03  Score=47.59  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +|.|||+|..|+..|..|++ |++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999999999999999976 99999999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.19  E-value=0.043  Score=43.34  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.++|+|+|-+|.++|..|.+ |.+|++++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5789999999999999999975 99999999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.15  E-value=0.039  Score=44.71  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=28.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..++|.|||+|..|.+.|..|++ |++|+++ +++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            35789999999999999999976 9999999 654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.07  E-value=0.049  Score=44.15  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ..+|.|||+|..|.++|..|.. ++ ++.++|.++.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            4689999999999999999964 66 9999999764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.07  E-value=0.031  Score=45.07  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=28.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhc-c-----C-CcEEEEcC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQ-F-----S-ADVTLIDP   43 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~-~-----g-~~v~vie~   43 (290)
                      .++++|.|||+|..|.+.|..|. .     | ++|+++++
T Consensus         6 ~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            6 QQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            33468999999999999999995 4     7 89999998

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.01  E-value=0.037  Score=44.30  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++++.|||+|..|...|..|.+ |++|+++|+++.
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            3689999999999999999975 899999998753

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.00  E-value=0.043  Score=44.34  Aligned_cols=33  Identities=30%  Similarity=0.356  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      +++|.|||.|..|...|..|.+ |+ +|+++|++.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            5789999999999999999976 99 999999963

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.98  E-value=0.043  Score=44.65  Aligned_cols=29  Identities=24%  Similarity=0.385  Sum_probs=27.3

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDP   43 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~   43 (290)
                      +|.|||+|..|.+.|..|.+ |++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            69999999999999999976 999999999

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.98  E-value=0.056  Score=43.12  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      +++|.|||+|.-|-..|..|+.|++|+++|+++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~laaG~~V~v~d~~~~   45 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIASKHEVVLQDVSEK   45 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             CCeEEEEeeCHHHHHHHHHHHcCCEEEEEECCHH
Confidence            5889999999999999988778899999999763

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.95  E-value=0.046  Score=44.04  Aligned_cols=32  Identities=34%  Similarity=0.534  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~   45 (290)
                      ++|.|||+|..|.+.|..|.. |  .+|+++|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            579999999999999999975 7  7899999975

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.95  E-value=0.05  Score=46.59  Aligned_cols=35  Identities=20%  Similarity=0.133  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-c-CC-cEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SA-DVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-~-g~-~v~vie~~~~   46 (290)
                      ..++|.|||+|..|+..|..|+ . |+ +|+++|+++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3578999999999999999995 6 89 9999999876

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.90  E-value=0.06  Score=43.11  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      .++++|||+|.+|.++|..|.+ |. +|+|++|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            5789999999999999999976 87 899999974

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=93.90  E-value=0.052  Score=45.12  Aligned_cols=35  Identities=34%  Similarity=0.532  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..++|+|||+|..|..++..+++ |++|.++|+++.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46789999999999999999987 999999998764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=93.90  E-value=0.045  Score=47.25  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~  174 (290)
                      |+|+|||+|.+|+-+|..|++  .+.+|+++++.+.+.
T Consensus         2 k~VvVIGaG~~GL~aA~~La~--~G~~V~VlEa~~~~G   37 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQA--AGIPVLLLEQRDKPG   37 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH--TTCCEEEECCC----
T ss_pred             CCEEEECCcHHHHHHHHHHHH--CCCcEEEEccCCCCC
Confidence            789999999999999999997  489999999887654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.88  E-value=0.047  Score=44.23  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      ++|.|||+|..|.+.|..|.. |+  +|+++|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            369999999999999999975 88  999999975

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.88  E-value=0.049  Score=43.69  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+++.|||+|..|..+|..|+. |++|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35789999999999999999975 99999999864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.85  E-value=0.065  Score=43.41  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      ...+|.|||+|..|.++|+.|+. +.  ++.++|.++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            45799999999999999999965 65  899999865

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.82  E-value=0.051  Score=43.43  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+++.|||+|..|..+|..|+. |.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35789999999999999999975 99999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.77  E-value=0.06  Score=46.25  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|.-|.+.|..|.+ |++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            4689999999999999999975 999999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.74  E-value=0.06  Score=40.61  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=28.1

Q ss_pred             cEEEEc-CChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           15 RVVVIG-GGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIG-aG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++||| +|..|...|..|.+ |++|+++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999 99999999999975 89999999864

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=93.73  E-value=0.042  Score=43.88  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~~   46 (290)
                      ++|.|||+|..|.++|..|.. ++  ++.++|.++.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~   36 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChH
Confidence            379999999999999999975 66  8999998763

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=93.71  E-value=0.07  Score=41.69  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++++.|||+|..|...|..|.+ |++|.++++++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            4689999999999999999976 89999999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.67  E-value=0.049  Score=43.60  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++++.|||+|..|...|..|.+ |++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999975 99999999865

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.64  E-value=0.059  Score=43.71  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C----CcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S----ADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g----~~v~vie~~~~   46 (290)
                      .++|.|||+|..|.+.|..|.+ |    ++|+++++++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            4689999999999999999965 7    89999998763

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.59  E-value=0.054  Score=41.55  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCCCC
Q 022896           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (290)
                      ..++++|.|| |..|..++.+|. +|++|++++|+..
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            3578999998 999999999996 4999999999753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.56  E-value=0.057  Score=41.06  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +++|+|.|| |..|..++.+|.+ |++|++++|++.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            478999996 9999999999965 999999999753

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=93.55  E-value=0.052  Score=45.47  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+.++|||.|..|..+|..|+. |.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46899999999999999999975 99999999865

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.54  E-value=0.071  Score=43.20  Aligned_cols=34  Identities=21%  Similarity=0.504  Sum_probs=29.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      ...+|+|||+|..|.++|+.|.. +.  ++.++|.++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            35789999999999999999964 55  899999864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.54  E-value=0.064  Score=45.78  Aligned_cols=34  Identities=29%  Similarity=0.282  Sum_probs=30.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+.++|+|+|..|.++|..|+. |.+|+++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35889999999999999999975 99999999865

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.53  E-value=0.075  Score=42.08  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-cCCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (290)
                      +++|+|.|+|..|..++.+|. +|++|++++|+..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            368999999999999999996 4999999999754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.49  E-value=0.16  Score=43.83  Aligned_cols=61  Identities=20%  Similarity=0.323  Sum_probs=45.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCC------------------hhHHHHHHHHHHhCCcEE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG------------------PKAGDKTRDWLISKKVDV  196 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~gi~~  196 (290)
                      ...+|+|||+|.+|+.+|..|.+.  +.+|+++++.+++.....                  ......+.+.+++.|+++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~--g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~  109 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL  109 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCc
Confidence            357899999999999999999974  889999998876543210                  011355677788888865


Q ss_pred             E
Q 022896          197 K  197 (290)
Q Consensus       197 ~  197 (290)
                      .
T Consensus       110 ~  110 (498)
T 2iid_A          110 N  110 (498)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=93.48  E-value=0.26  Score=42.48  Aligned_cols=79  Identities=15%  Similarity=0.181  Sum_probs=55.9

Q ss_pred             hcCCeEEEEcCchhHHH-HHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce
Q 022896          134 KSARSILIVGGGPTGVE-LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD  212 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~-~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~  212 (290)
                      ...+++.++|-|.+|+. +|..|.+  .+.+|+..+..+.       .    ..+.|++.|+++..+.....        
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~--~G~~V~~~D~~~~-------~----~~~~l~~~gi~~~~g~~~~~--------   78 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLAN--EGYQISGSDLAPN-------S----VTQHLTALGAQIYFHHRPEN--------   78 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHH--TTCEEEEECSSCC-------H----HHHHHHHTTCEEESSCCGGG--------
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHh--CCCeEEEEECCCC-------H----HHHHHHHCCCEEECCCCHHH--------
Confidence            35689999999999996 7888886  4899998875532       1    23457788999886632210        


Q ss_pred             eEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896          213 TYLTSTGDTINADCHFLCTGKPVGSDWLK  241 (290)
Q Consensus       213 ~v~~~~g~~~~~d~vv~a~G~~~~~~~l~  241 (290)
                              ...+|.||+++|..+..+.+.
T Consensus        79 --------~~~~d~vV~Spgi~~~~p~~~   99 (494)
T 4hv4_A           79 --------VLDASVVVVSTAISADNPEIV   99 (494)
T ss_dssp             --------GTTCSEEEECTTSCTTCHHHH
T ss_pred             --------cCCCCEEEECCCCCCCCHHHH
Confidence                    013899999999988666553

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.48  E-value=0.072  Score=43.06  Aligned_cols=33  Identities=39%  Similarity=0.590  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~   45 (290)
                      ..+|+|||+|..|.+.|+.|+. +  .++.++|.++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4789999999999999999964 5  3899999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.45  E-value=0.079  Score=41.09  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC----cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA----DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~----~v~vie~~~~   46 (290)
                      ++++.|||+|..|.+.|..|.+ |+    +|+++|+++.
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            3689999999999999999975 87    9999999753

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.44  E-value=0.068  Score=43.47  Aligned_cols=34  Identities=24%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +++|+|.|| |..|..++.+|.+ |++|++++++..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   48 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSS   48 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence            358999996 9999999999964 999999998753

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=93.44  E-value=0.081  Score=44.08  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=33.3

Q ss_pred             hccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896            8 QSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus         8 ~~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ||.++.++|+|+|+|..|...+..+++ |++|.+++..+.
T Consensus         6 pm~~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~   45 (391)
T 1kjq_A            6 ALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (391)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            455567899999999999999999986 999999998653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.38  E-value=0.076  Score=42.98  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ..+|.|||+|..|.++|..|.. +. ++.++|.++.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            3689999999999999999964 66 9999999764

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.37  E-value=0.02  Score=43.90  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (290)
                      ..++|.|||+|-.|-+.|..|++ |++|+.+++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            35789999999999999999976 9999999984

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.36  E-value=0.067  Score=42.28  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      .++++|||+|-+|-++|..|.+ |. +|+|+.|+..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            5789999999999999999976 87 8999998753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.33  E-value=0.077  Score=43.33  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+|.|||.|..|-+.|..|++ |++|+++|+++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999975 99999999876

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.30  E-value=0.076  Score=42.16  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      ++|.|||+|..|...|..|.+|++|+++++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~g~~V~~~~~~~~   34 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFE   34 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCEEEECSSTH
T ss_pred             CeEEEEcccHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            479999999999999999844999999998764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.29  E-value=0.048  Score=43.08  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++++|+|+|-+|.++|..|.+ |.+|+|++|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5789999999999999999975 89999999974

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.29  E-value=0.073  Score=42.92  Aligned_cols=33  Identities=33%  Similarity=0.528  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~~   46 (290)
                      ++|.|||+|..|.++|+.|.. +.  ++.++|.++.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            479999999999999999964 55  8999999773

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.28  E-value=0.07  Score=42.17  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++.|||+|..|.+.|..|.+ |++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999999999975 89999999865

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.27  E-value=0.076  Score=44.28  Aligned_cols=35  Identities=26%  Similarity=0.521  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..++|+|||+|..|..+|..+++ |++|.++|.++.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            45789999999999999999986 999999998653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.26  E-value=0.076  Score=42.04  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=28.4

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      ++|.|||+|..|.+.|..|.+ |+  +|+++|+++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            479999999999999999975 87  899999865

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.24  E-value=0.072  Score=41.66  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~   45 (290)
                      ++.|||+|..|.+.|..|.+ | ++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            68999999999999999975 8 9999999865

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.14  E-value=0.072  Score=45.83  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~   45 (290)
                      .++|.|||+|..|+..|..|++   |++|+++|+++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4689999999999999999964   68999999865

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=93.14  E-value=0.084  Score=42.49  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCC-hHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGG-VAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG-~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...+++|||+| +.|-.+|..|.. |.+|++++++.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~  211 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN  211 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCch
Confidence            46899999999 679999999965 99999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=93.12  E-value=0.079  Score=45.48  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ....|+|||+|..|..+|..|+. |++|+++|+++
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46889999999999999999975 99999999865

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.10  E-value=0.075  Score=42.41  Aligned_cols=32  Identities=28%  Similarity=0.203  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +|.|||+|..|...|..|.+ |++|+++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            69999999999999999965 999999999763

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.02  E-value=0.067  Score=44.87  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=27.0

Q ss_pred             CcEEEEcCChHHHHHHHHhc-c-CCcEEEEcC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDP   43 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~   43 (290)
                      ++|.|||+|..|.+.|..|+ . |++|+++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            58999999999999999995 3 899999993

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.00  E-value=0.09  Score=41.09  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C----CcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S----ADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g----~~v~vie~~~~   46 (290)
                      ++|.|||+|..|.+.|..|.+ |    ++|+++++++.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            589999999999999999975 7    79999998764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.98  E-value=0.083  Score=41.75  Aligned_cols=33  Identities=30%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .++++|||+|..|-++|..|.+ |.+|++++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4789999999999999999975 88999999864

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=92.92  E-value=0.11  Score=43.01  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      .|+|||+|++|+-+|..|++  .+.+|+++++.+.+
T Consensus         6 DViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSST
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            69999999999999999997  48999999987654

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=92.91  E-value=0.091  Score=44.10  Aligned_cols=34  Identities=35%  Similarity=0.444  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ....++|||+|..|..+|..|+. |. +|+++++..
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            46789999999999999999975 88 899999864

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.89  E-value=0.1  Score=42.23  Aligned_cols=33  Identities=39%  Similarity=0.532  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~   45 (290)
                      ..+|+|||+|..|.++|..|.. +  .++.++|.++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4799999999999999999964 5  4899999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.88  E-value=0.086  Score=43.01  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           11 GKNKRVVVIGG-GVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        11 ~~~~dvvIIGa-G~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+.|+|.|| |..|..++.+|.+ |++|+++++...
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            34688999999 9999999999964 999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.87  E-value=0.087  Score=46.33  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      .+++|||+|..|..+|..|.+ |++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            789999999999999999975 9999999998753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.86  E-value=0.095  Score=42.37  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=28.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~   45 (290)
                      +.+|+|||||..|.++|+.|.. +.  ++.++|.++
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            4799999999999999999964 43  799999854

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=92.85  E-value=0.14  Score=44.30  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~  175 (290)
                      ..|+|||+|.+|+-+|..|.++ .+.+|+++++.+++..
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETPGG   48 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSCCG
T ss_pred             CCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCCcC
Confidence            4699999999999999999863 5889999998877643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=92.82  E-value=0.2  Score=41.71  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ..+|+|||+|..|+.+|..|.+  .+.+|+++++.+..
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~   40 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQP   40 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence            4689999999999999999997  48999999988654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.81  E-value=0.11  Score=44.67  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=30.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +++|.|||.|..|.+.|..|.+ |++|+++|+++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999975 999999999874

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.80  E-value=0.12  Score=46.91  Aligned_cols=34  Identities=38%  Similarity=0.547  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+|.|||+|.-|...|..|.+ |++|+++|+++.
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4679999999999999999976 999999999863

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.79  E-value=0.093  Score=39.59  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             cEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCCC
Q 022896           15 RVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (290)
                      +|+|.|| |..|..++.+|. +|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6999996 999999999996 599999999975

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.77  E-value=0.11  Score=44.64  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++|.|||+|.-|.+.|..|.+ |++|+++++++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            5789999999999999999976 99999999975

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=92.74  E-value=0.1  Score=42.97  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+.|+|+|+|..|..+|..|.+ |++|++.|++.
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~  206 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK  206 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45889999999999999999975 99999999753

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=92.73  E-value=0.23  Score=44.21  Aligned_cols=42  Identities=31%  Similarity=0.563  Sum_probs=38.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~   53 (290)
                      ++||++|||+|..|..+|..|++ |.+|++||+++++|+.|..
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~   49 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   49 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence            46999999999999999999986 9999999999999988753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.72  E-value=0.057  Score=44.38  Aligned_cols=33  Identities=33%  Similarity=0.372  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C-------CcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S-------ADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g-------~~v~vie~~~~   46 (290)
                      ++|.|||+|..|.+.|..|.+ |       ++|+++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            589999999999999999975 7       89999999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.69  E-value=0.11  Score=42.20  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=29.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhc-cCC--cEEEEcCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (290)
                      ....+|.|||+|..|.++|+.|. ++.  ++.++|.+.
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            34689999999999999999986 465  899999864

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=92.68  E-value=0.11  Score=41.21  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=29.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ..++++|+|+|-+|-++|..|.+ |. +|+|++|+.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            35789999999999999999975 87 699999875

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=92.65  E-value=0.21  Score=44.18  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      ..+|+|||+|..|+-+|..|+.  .+.+|+++++.+.
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar--~G~~V~LiEr~~~   57 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAF   57 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHc--CCCCEEEEcCCCC
Confidence            4799999999999999999987  4889999998753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.63  E-value=0.091  Score=45.02  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-c--CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-~--g~~v~vie~~~   45 (290)
                      +++|.|||+|..|+..|..|+ .  |++|+++|+++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            368999999999999999996 4  69999999875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.63  E-value=0.11  Score=42.24  Aligned_cols=34  Identities=26%  Similarity=0.552  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (290)
                      ..+|+|||+|-.|..+|.+|.+ | .+++++|.+..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            6899999999999999999986 6 58999998764

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=92.62  E-value=0.11  Score=43.05  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhcc-CC---cEEEEcCCC
Q 022896           12 KNKRVVVIGG-GVAGSLVAKSLQF-SA---DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGa-G~aGl~~A~~L~~-g~---~v~vie~~~   45 (290)
                      ...+|+|||| |.+|+.|+..+.. |.   +|+++|.+.
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            3679999999 9999999999976 97   999999865

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.61  E-value=0.13  Score=41.00  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.++|+|+|-.|.++|..|.+ | +|++++|+.
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            4789999999999999999976 9 999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	1e-08
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	3e-04
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	1e-07
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	7e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	2e-07
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-07
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-07
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	6e-05
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	8e-07
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	2e-05
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	6e-06
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.003
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	1e-05
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	1e-05
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	2e-05
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	2e-05
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	3e-05
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	3e-05
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	6e-05
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	0.004
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	8e-05
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	3e-04
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	3e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	7e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	9e-04
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.001
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	0.001
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	0.001
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	0.002
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	0.003
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.003
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	0.004
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.004
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	0.004

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 3/113 (2%)

Query: 123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEFIGP- 179
           +  +++  +  +  +SI I+GGG  G ELA  +         +V  +      +  I P 
Sbjct: 24  IGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPE 83

Query: 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 232
              + T + +  + V V     V    VS G        G  +  D      G
Sbjct: 84  YLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-----QFSADVTLIDPKEYFEITWA--SL 54
           + R  ++   + K + +IGGG  GS +A +L         +V  + P++          L
Sbjct: 26  DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYL 85

Query: 55  RAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
                    +  V           IV S  ++  +  +   +GR+V  D++V A G
Sbjct: 86  SNWTMEKVRREGVKVMP-----NAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 110 GHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK 169
           G   PV   RT  L   +     ++    +LIVGGG  G+ELA           V+LV  
Sbjct: 6   GATMPVHTLRT--LEDARRIQAGLRPQSRLLIVGGGVIGLELAATA--RTAGVHVSLVET 61

Query: 170 GSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHF 228
             RL+         D    +  ++ VD++    V            L   G  I AD   
Sbjct: 62  QPRLMSRAAPATLADFVARYHAAQGVDLRFERSVT----GSVDGVVLLDDGTRIAADMVV 117

Query: 229 LCTG 232
           +  G
Sbjct: 118 VGIG 121

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITW--ASLRAMV 58
           ++RR Q       R++++GGGV G  +A +       V+L++ +         A+L   V
Sbjct: 19  DARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFV 78

Query: 59  EPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
                 + V    +  V G           +  VL  +G R+  D +V+  G
Sbjct: 79  ARYHAAQGVDLRFERSVTG---------SVDGVVLLDDGTRIAADMVVVGIG 121

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 48.3 bits (113), Expect = 2e-07
 Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 13/155 (8%)

Query: 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EFIGPKAGDKTRD 187
           + R +++VGGG  G   A  I +  P  +VTL+   +             G +  +  + 
Sbjct: 1   AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKH 60

Query: 188 WLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK- 246
                +         +   +        T+ G     D   +  G  +  D ++    K 
Sbjct: 61  GYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKI 120

Query: 247 -----DSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276
                 + D     +  +       K I  IGD +
Sbjct: 121 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDAS 155

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINH 70
           ++VVV+GGG  G+  AK ++    S +VTLI+P   +   + S   +      +     +
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62

Query: 71  TDYLVNGRIVASP---AINITENEVLTAEGRRVVYDYLVIATGHK 112
                +G  V       I+  +  V TA G    YD  V+A G +
Sbjct: 63  DGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIE 107

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 9/151 (5%)

Query: 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-------LLEFIGPKAGDKTRDWLI 190
            ++++G G   V    E+     +  +T+V   +        L +        +      
Sbjct: 5   PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDC 64

Query: 191 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS-L 249
            +  +V+    V   S    + T   S G T+      L TG    +    D + + + L
Sbjct: 65  KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGL 124

Query: 250 DTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280
                + VD   R     +++A+GD+T  R 
Sbjct: 125 ACDDGIFVDAYGR-TTCPDVYALGDVTRQRN 154

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 30/167 (17%)

Query: 14  KRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD 72
             VVV+G G+A       L Q      +    +  E  +       +      +     D
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 73  YLVNGRI-----VASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ 127
                 +     V + + +   + V  ++GR + Y  LV+ATG     P+         +
Sbjct: 64  CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGA---APRAVLANDALAR 120

Query: 128 AENQKIK---------------------SARSILIVGGGPTGVELAG 153
           A                             R    + G    +E   
Sbjct: 121 AAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWS 167

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 45.9 bits (107), Expect = 8e-07
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 8/146 (5%)

Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----EFIGPKAGDKTRDWLISKKV 194
           ++IVG GP G ELA +++  +   +VT++ K               AG   R+ L    +
Sbjct: 3   VVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59

Query: 195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 254
           D      + +    E                     T          D   +  + T   
Sbjct: 60  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119

Query: 255 LMVDENLRVKGQKNIFAIGDITDIRV 280
           +++D+N R    K+++AIGD  +   
Sbjct: 120 ILIDDNFRTS-AKDVYAIGDCAEYSG 144

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 24/163 (14%)

Query: 15  RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITW-----ASLRAMVEPSFGKRSVIN 69
           +VV++G G  G  +AK L  + +VT+ID +     +           +        S+  
Sbjct: 2   KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW 61

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDP--------------- 114
           +    +  R+     +     +V+  E   V YD LV+ATG  +                
Sbjct: 62  YRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGIL 121

Query: 115 -VPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA 156
                RT   + Y   +       S +I G     +E A  +A
Sbjct: 122 IDDNFRTSAKDVYAIGDCA---EYSGIIAGTAKAAMEQARVLA 161

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 20/160 (12%)

Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------------EFIGPKAGDKT 185
           ++++G    G E   E+    P+ ++    KG  +                        T
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62

Query: 186 RDWLISKKVDVKL---GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK----PVGSD 238
            + + S+ V+V        +            ++      N D   +  G       G  
Sbjct: 63  GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVR 122

Query: 239 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278
                +          L+  +      + ++FA+GD T I
Sbjct: 123 PNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLI 162

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 15 RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF 47
          +V+V+G    G        +L   A++   +  ++ 
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI 190
           + I+++   +I+GGG  G+ELAG +        V L+H+G+  L     +  +  +D L 
Sbjct: 27  ESIENSGEAIIIGGGFIGLELAGNL--AEAGYHVKLIHRGAMFLGL-DEELSNMIKDMLE 83

Query: 191 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 232
              V   L        + E ++  + +    I         G
Sbjct: 84  ETGVKFFLNSE-----LLEANEEGVLTNSGFIEGKVKICAIG 120

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 195
           R +L VGGG   VE AG      P+  +VTL ++G  +L        ++    L +  + 
Sbjct: 21  RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQ 80

Query: 196 VKLGERV-NLDSVSEGSDTYLTSTGDTINADC 226
           +   E    ++  ++GS +    +G  ++ D 
Sbjct: 81  ILTKENPAKVELNADGSKSVTFESGKKMDFDL 112

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTRD 187
           ++IVG G  GVE+A  +     E  + LV   + +                       R 
Sbjct: 6   VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65

Query: 188 WLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCT-GKPV--GSDWLKDTI 244
                  +++L     + +++      + S G  ++ D   L T G+P+    +      
Sbjct: 66  PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAG 125

Query: 245 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280
               L     ++++E+++      I A+GD      
Sbjct: 126 ----LQVDNGIVINEHMQT-SDPLIMAVGDCARFHS 156

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 10/172 (5%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINH 70
               V+++G G +GS  A+ L +    V L D  E        + A+             
Sbjct: 48  NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYR 107

Query: 71  TDYLVN-GRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAE 129
              +    +      + + +  +   +  +   D ++IATG  +       +      AE
Sbjct: 108 ETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAE 167

Query: 130 NQKI------KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE 175
           N          +    LI     TG  +A EI       ++ + +K   +  
Sbjct: 168 NDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEA--NPQIAIPYKRETIAW 217

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI 68
           ++ + K VV+IG G+ G               +            L   VE   G  +  
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDE 60

Query: 69  NHTDYLVNGRIVASPAINITENEVLTAEGRRV 100
                     IVASP I +    +  A    +
Sbjct: 61  WLMAA---DLIVASPGIALAHPSLSAAADAGI 89

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193
                + +VG G  GVE      ++    K  L       L    P   +   + + ++ 
Sbjct: 19  ALPERVAVVGAGYIGVE--LGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEG 76

Query: 194 VDVKLGERV-NLDSVSEGSDTYLTSTGDTINADCHFLCTG 232
             +        +   ++GS T     G +   DC     G
Sbjct: 77  PQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 39.4 bits (91), Expect = 6e-05
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 137 RSILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 195
           +  L VGGG   +E AG          +V L ++G  +L     +   +  + L +  ++
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 196 VKLGERV-NLDSVSEGSDTYLTSTGDTINADCHFLCTG 232
           V+  E    +   ++G+   +  +G   + D   L  G
Sbjct: 79  VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 1/98 (1%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD 72
           KR + +GGG      A       A    +D     ++      + +     ++   N  +
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 73  YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
              +               V+   G    YD +++A G
Sbjct: 79  VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 28/178 (15%), Positives = 50/178 (28%), Gaps = 40/178 (22%)

Query: 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL--------------------- 173
           S    L++GGG      A  I    P  +V +V +   L                     
Sbjct: 3   SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTK 62

Query: 174 ---------------LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST 218
                           +        +    + +  V V  G++V    +    +    + 
Sbjct: 63  TLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKV--VQLDVRDNMVKLND 120

Query: 219 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276
           G  I  +   + TG    +  L  T   +     G   V+  L+   + NI+  GD  
Sbjct: 121 GSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQ--ARSNIWVAGDAA 176

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 24/159 (15%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLIDPKEYFEITWASLRAMV 58
           E++       + K + V+G G AG   A +         +     +   +   A      
Sbjct: 32  ETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPG- 90

Query: 59  EPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT 118
                K        Y     ++    + +  N  +TA+  +  +D  ++A+G  +     
Sbjct: 91  -----KEEFYETLRYYRR--MIEVTGVTLKLNHTVTADQLQ-AFDETILASGIPNRALA- 141

Query: 119 RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAV 157
                         I S +++ ++GG    +EL    A+
Sbjct: 142 -----------QPLIDSGKTVHLIGGCDVAMELDARRAI 169

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 6/131 (4%)

Query: 12  KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINH 70
           K+KR+++IGGG V  + + K +     +TL+ P         S+          +   ++
Sbjct: 12  KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD-----LHKSIIPKFGKFIQNKDQPDY 66

Query: 71  TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAEN 130
            +                  E + ++ +    D           +        +      
Sbjct: 67  REDAKRFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHL 126

Query: 131 QKIKSARSILI 141
            K +  +  L+
Sbjct: 127 CKERFGKQQLV 137

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKE 45
          ++   VVIGGG+ GS +A  L + + +  L +   
Sbjct: 3  RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 37.8 bits (86), Expect = 9e-04
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15 RVVVIGGGVAGSLVAKSL--QFSADVTLIDPKEYFEITWASLRA 56
          R+V+IG G+ G+ +A  L  +   ++T++D         ++  A
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHA 46

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 13 NKRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKE 45
           KRVVV+G GV G   A  L      V ++    
Sbjct: 6  QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV 196
           + +++VGGG  G+EL    A      +V++V    R+L     +      + L    + +
Sbjct: 22  QHLVVVGGGYIGLELGI--AYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIAL 79

Query: 197 KLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTG 232
            LG  V  +    G        G    + AD   +  G
Sbjct: 80  HLGHSV--EGYENGCLLANDGKGGQLRLEADRVLVAVG 115

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLID 42
          K+K+++++G G +G+++ + L +    V +ID
Sbjct: 1  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIID 32

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 191
            IK ++ I IVG G   VEL   I     +    +  +G+R+L        +   + +  
Sbjct: 18  NIKESKKIGIVGSGYIAVELINVIKRLGIDS--YIFARGNRILRKFDESVINVLENDMKK 75

Query: 192 KKVDVKLGERV-NLDSVSEGSDTYLTSTGDTI 222
             +++     V  +  VS+ + +   S G   
Sbjct: 76  NNINIVTFADVVEIKKVSDKNLSIHLSDGRIY 107

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWASLRAMV 58
           ++   ++    + R+VVIGGG  G  VA           +     +    +T   + A  
Sbjct: 24  DAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFY 83

Query: 59  EPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
           E    +  V   T   V G  +++    +T   VL  +G R+  D ++   G
Sbjct: 84  EHLHREAGVDIRTGTQVCGFEMSTDQQKVT--AVLCEDGTRLPADLVIAGIG 133

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 21/158 (13%)

Query: 139 ILIVGGGPTGVELA--------------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 184
           +LI+G GP G   A              G            + +      +  GP   ++
Sbjct: 8   LLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMER 67

Query: 185 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
             +     + ++       +D   +     L         D   + TG           I
Sbjct: 68  MHEHATKFETEIIFDHINKVD--LQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAI 125

Query: 245 LKDSLDT-HGMLMVDENLRVKGQKN----IFAIGDITD 277
            +  L+  +G + V   +     +     +FA GD+ D
Sbjct: 126 FEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMD 163

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LLEFIGPKAGDKTRDWLISK 192
               +++++G G  G+E A   A     KKVT++    R L  ++  +  D   + + + 
Sbjct: 28  PEVNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 85

Query: 193 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINAD 225
            + +  GE V      +G    + +  +  +AD
Sbjct: 86  NITIATGETVE-RYEGDGRVQKVVTDKNAYDAD 117

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 10 EGKNKRVVVIGGGVAGSLVAKSL--QFSADVTLIDPKEYFEITWA 52
          E  + ++ ++G G A    A  L     +D+T+ + +EY      
Sbjct: 1  EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST 45

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLID 42
          K  +V++IG GV+G   A+ L  F  DVTL++
Sbjct: 4  KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.84
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.81
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.8
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.8
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.78
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.77
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.77
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.76
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.74
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.73
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.73
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.73
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.72
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.72
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.71
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.7
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.7
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.7
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.7
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.69
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.67
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.67
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.67
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.66
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.66
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.66
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.65
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.65
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.65
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.64
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.63
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.62
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.62
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.61
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.61
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.61
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.61
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.6
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.6
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.59
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.59
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.58
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.57
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.51
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.51
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.5
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.5
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.5
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.49
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.48
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.43
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.42
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.38
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.37
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.34
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.33
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.3
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.3
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.3
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.28
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.19
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.16
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.15
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.15
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.14
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.14
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.14
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.13
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.12
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.11
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.09
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.06
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.02
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.02
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.02
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.01
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.0
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.0
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.99
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.99
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.98
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.97
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.93
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.92
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.91
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.91
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.88
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.88
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.88
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.88
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.87
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.87
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.86
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.85
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.85
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.85
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.85
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.85
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.83
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.82
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.82
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.77
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.73
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.7
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.67
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.67
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.65
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.64
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.62
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.59
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.55
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.54
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.52
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.51
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.51
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.51
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.48
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.44
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.4
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.31
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.26
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.23
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.15
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.14
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.14
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.06
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.06
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.05
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.04
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.0
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.93
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.91
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.9
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.82
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.74
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.73
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.71
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.7
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.69
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.63
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.62
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.59
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.58
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.51
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.5
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.44
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.4
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.37
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.29
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.28
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.26
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.26
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.22
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.08
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.98
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	96.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.92
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.92
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	96.8
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.79
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.77
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.77
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.77
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.72
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.69
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.68
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.64
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.58
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.44
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.39
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	96.38
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.32
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.24
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.12
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.1
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.86
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.85
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.8
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.73
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.73
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.72
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.66
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.62
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.49
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.47
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.46
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.45
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.41
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.37
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.27
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.25
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.24
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.22
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.12
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.04
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.96
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	94.93
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.92
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.85
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.82
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.8
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.78
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.75
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.74
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.73
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.71
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.71
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.66
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.63
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.62
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.6
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.57
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	94.56
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.52
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.43
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.42
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.09
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.06
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.01
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.01
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.96
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.87
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.81
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.75
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.71
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	93.69
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.66
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.64
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.61
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.41
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.4
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.39
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.31
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.3
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.24
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.21
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.21
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.2
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.16
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.15
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.14
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.05
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.98
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.88
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.88
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.75
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	92.58
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	92.57
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.49
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.47
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.45
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.44
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.44
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	92.42
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.11
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.95
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.91
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.81
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.8
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.74
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.72
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.37
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.32
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.3
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.27
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.25
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.09
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.05
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.97
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	90.75
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.63
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.61
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.58
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	90.51
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.41
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.4
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.35
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.23
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	90.12
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	90.01
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.85
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	89.83
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	89.79
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.77
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.63
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.52
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	89.28
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.25
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	89.02
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	89.01
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	89.01
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	88.81
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.81
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	88.81
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	88.7
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	88.69
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	88.59
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	88.52
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	88.5
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.49
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.38
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.3
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.25
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	88.06
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	87.74
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.64
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.52
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	87.33
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.31
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	87.27
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.2
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.62
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	86.47
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.45
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	86.43
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.18
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	86.06
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.0
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.76
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	85.19
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	85.19
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	84.79
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.7
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	84.3
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	84.29
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	84.26
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.22
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.11
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	83.9
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.68
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	83.19
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	83.14
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	83.06
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	82.99
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	82.99
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	82.83
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	82.82
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	82.75
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	82.74
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	82.57
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.3
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	82.3
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	82.2
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.17
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	82.03
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	81.95
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	81.84
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	81.78
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	81.75
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.58
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	81.56
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	81.44
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	81.29
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	80.98
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	80.95
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	80.89
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	80.72
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	80.7
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	80.66
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.49
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	80.33
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	80.29
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	80.09

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.84  E-value=4.2e-21  Score=147.84  Aligned_cols=94  Identities=18%  Similarity=0.196  Sum_probs=65.1

Q ss_pred             HHHHHHhCCcEEEeCceEeecccCCCceeE--EcCCCcEEeccEEEEccCC-----CCCchhhcccccccccCCCCcEEe
Q 022896          185 TRDWLISKKVDVKLGERVNLDSVSEGSDTY--LTSTGDTINADCHFLCTGK-----PVGSDWLKDTILKDSLDTHGMLMV  257 (290)
Q Consensus       185 ~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v--~~~~g~~~~~d~vv~a~G~-----~~~~~~l~~~~~~~~~~~~g~~~v  257 (290)
                      +...++..+++++.....  + .++.....  ...++..+.+|.||+|||.     .|+.+.+....++++++++|++.|
T Consensus        99 ~~~~~~~~~v~~i~~~~~--~-~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~i~v  175 (221)
T d1dxla1          99 IEGLFKKNKVTYVKGYGK--F-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILV  175 (221)
T ss_dssp             HHHHHHHHTCEEEESCEE--E-EETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSCBCC
T ss_pred             HHHhhhcCCeEEEEeccc--c-ccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCcEEe
Confidence            344556667877755433  1 11111111  2233457899999999994     456665554556668899999999


Q ss_pred             cCCccccCCCCeEEeccccCccccc
Q 022896          258 DENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       258 ~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      |+++|| ++|+|||+|||++.|...
T Consensus       176 d~~~~T-~v~gi~A~GDv~~g~~l~  199 (221)
T d1dxla1         176 NERFST-NVSGVYAIGDVIPGPMLA  199 (221)
T ss_dssp             CTTCBC-SSTTEEECSTTSSSCCCH
T ss_pred             CCCccc-CCCCEEEEeccCCCcccH
Confidence            999998 799999999999887643

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=2.9e-21  Score=148.97  Aligned_cols=95  Identities=24%  Similarity=0.261  Sum_probs=65.9

Q ss_pred             HHHHHHhCCcEEEeCceEeecccCCCceeE-EcCCCcEEeccEEEEcc--------CCCCCchhhcccccccccCCCCcE
Q 022896          185 TRDWLISKKVDVKLGERVNLDSVSEGSDTY-LTSTGDTINADCHFLCT--------GKPVGSDWLKDTILKDSLDTHGML  255 (290)
Q Consensus       185 ~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v-~~~~g~~~~~d~vv~a~--------G~~~~~~~l~~~~~~~~~~~~g~~  255 (290)
                      ....++..+++++.+...  +.. +....+ ...++..+.++.+++++        |..|+.+.|....++++++++|+|
T Consensus        97 ~~~~~~~~~V~~i~G~a~--f~~-~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~~~G~I  173 (223)
T d1ebda1          97 VEGLLKGNKVEIVKGEAY--FVD-ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLI  173 (223)
T ss_dssp             HHHHHHTTTCEEEESEEE--EEE-TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBCTTSCB
T ss_pred             HHHhhhccceeeeccEEE--Ecc-CcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhcCceECCCCCE
Confidence            444556667777766422  221 222222 23334578899999986        677777765544556678999999


Q ss_pred             EecCCccccCCCCeEEeccccCcccccc
Q 022896          256 MVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       256 ~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      .||+++|| +.|+|||+|||++.+...+
T Consensus       174 ~vd~~~~T-~~~gvyA~GDv~~~~~~~~  200 (223)
T d1ebda1         174 EVDQQCRT-SVPNIFAIGDIVPGPALAH  200 (223)
T ss_dssp             CCCTTCBC-SSTTEEECGGGSSSCCCHH
T ss_pred             eECCCCCC-CCCCEEEEeccCCCcccHH
Confidence            99999998 8999999999999876443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=1.6e-19  Score=136.32  Aligned_cols=138  Identities=23%  Similarity=0.356  Sum_probs=107.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCC--------------hhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG--------------PKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      ||+|||+|++|+++|..|.+..+..+|+++++.+.+ ....              ..+.....+.++++|++++.++.|+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI-SFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS-SBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc-cccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            699999999999999999987778899999987654 1111              1222223567889999999999999


Q ss_pred             ecccCCCceeEE-cCCCc--EEeccEEEEccCCCCC--------chhhcccccccccCCCCcEEecCCccccCCCCeEEe
Q 022896          204 LDSVSEGSDTYL-TSTGD--TINADCHFLCTGKPVG--------SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI  272 (290)
Q Consensus       204 ~i~~~~~~~~v~-~~~g~--~~~~d~vv~a~G~~~~--------~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~  272 (290)
                      +++.+++.+.+. ..+|+  ++++|.+++|+|..|+        ..+++.   ...++++|++.+|+++|+ +.|+|||+
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~---~~~~~~~G~i~vd~~~~T-~~~~IyA~  156 (198)
T d1nhpa1          81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG---TLELHPNGLIKTDEYMRT-SEPDVFAV  156 (198)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT---TSCBCTTSCBCCCTTCBC-SSTTEEEC
T ss_pred             eEeeccccceeeecccccccccccceeeEeecceeecccccccccccccc---cceeccCCceecCCcccc-cccceEEe
Confidence            998887777665 45554  5789999999997654        333333   225678999999999998 79999999


Q ss_pred             ccccCccc
Q 022896          273 GDITDIRV  280 (290)
Q Consensus       273 Gd~~~~~~  280 (290)
                      |||+..+.
T Consensus       157 GD~a~~~~  164 (198)
T d1nhpa1         157 GDATLIKY  164 (198)
T ss_dssp             GGGSCEEE
T ss_pred             cceeeccc
Confidence            99998654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.80  E-value=2.4e-20  Score=144.24  Aligned_cols=95  Identities=17%  Similarity=0.232  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCCch---------hhcccccccccC
Q 022896          182 GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD---------WLKDTILKDSLD  250 (290)
Q Consensus       182 ~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~---------~l~~~~~~~~~~  250 (290)
                      ...+...++..|++++.+....   .+..........+  ..+.++.+++++|..|...         ++...  .+.++
T Consensus       102 ~~~~~~~~~~~gV~vi~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~--gv~l~  176 (229)
T d3lada1         102 TGGVASLIKANGVTLFEGHGKL---LAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADS--GVTLD  176 (229)
T ss_dssp             HHHHHHHHHHHTCEEEESEEEE---CSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCC--SCCBC
T ss_pred             hhhHHHHhhcCCeEEEEeEEcc---cccceeeccccCccceeeecccccccCCcccccccccccccccchHhc--Ceeec
Confidence            3445566777899998776652   2233333333333  3678999999999877432         33333  44778


Q ss_pred             CCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          251 THGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       251 ~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      ++|++.+|+++|| +.|+|||+|||+..+...
T Consensus       177 ~~G~i~vd~~~~T-~vpgiyA~GDv~~g~~l~  207 (229)
T d3lada1         177 ERGFIYVDDYCAT-SVPGVYAIGDVVRGAMLA  207 (229)
T ss_dssp             TTSCBCCCTTSBC-SSTTEEECGGGSSSCCCH
T ss_pred             CCCcEEecccccC-CCCCEEEEeCCcchHHHH
Confidence            9999999999998 899999999999887544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=7e-20  Score=142.25  Aligned_cols=95  Identities=18%  Similarity=0.117  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCchh--------hcccccccccC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDW--------LKDTILKDSLD  250 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~--------l~~~~~~~~~~  250 (290)
                      +...+...+++.+|+++.+...   -.+.+...+...+++  .+.++.+++++|..|....        +......+.++
T Consensus       103 l~~g~~~~l~~~~V~vi~G~~~---~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~  179 (235)
T d1h6va1         103 LNWGYRVALREKKVVYENAYGK---FIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKIN  179 (235)
T ss_dssp             HHHHHHHHHHHHTCEEECCEEE---EEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCC
T ss_pred             ccchhhhhhhccCceEEEeEEe---eccccceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeec
Confidence            3344555677789998877654   233444556555654  5889999999998886422        12222334556


Q ss_pred             C-CCcEEecCCccccCCCCeEEeccccCcc
Q 022896          251 T-HGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       251 ~-~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      . .|+|.||+++|| |.|+|||+|||++.+
T Consensus       180 ~~~g~I~vd~~~~T-svpgIyA~GDv~~g~  208 (235)
T d1h6va1         180 EKTGKIPVTDEEQT-NVPYIYAIGDILEGK  208 (235)
T ss_dssp             SSSCCBCCCTTSBC-SSTTEEECGGGBTTS
T ss_pred             cccCccccCCcccc-CCCCEEEEEeccCCC
Confidence            5 599999999998 899999999999754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-19  Score=137.14  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      +||++||||||+|++||.++++ |.+|+|+|++...
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~G   38 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLG   38 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence            5999999999999999999987 9999999997653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.77  E-value=6.4e-19  Score=138.80  Aligned_cols=65  Identities=23%  Similarity=0.341  Sum_probs=54.8

Q ss_pred             CCcEEeccEEEEccCCCCCchhhcccc--------cccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          218 TGDTINADCHFLCTGKPVGSDWLKDTI--------LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       218 ~g~~~~~d~vv~a~G~~~~~~~l~~~~--------~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      +|+++++|.+++|+|.+|+.+.+....        ++++++++|+|.||+++|| +.|+|||+|||++.|...+
T Consensus       168 ~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~T-s~~~IyA~GDv~~~~~l~~  240 (261)
T d1mo9a1         168 AGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIGGPMEMF  240 (261)
T ss_dssp             TTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGCSSCSHH
T ss_pred             ccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCCCccc-CCCCEEEEEEeCCCcccHH
Confidence            577899999999999999876665432        3457889999999999998 7999999999998876544

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=2.2e-18  Score=133.34  Aligned_cols=100  Identities=24%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             HHHHHHHHhCCcEEEeCceEeecccC---CCceeEEcCCCc--EEeccEEEEccCCCCCchhh------c---ccccccc
Q 022896          183 DKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLTSTGD--TINADCHFLCTGKPVGSDWL------K---DTILKDS  248 (290)
Q Consensus       183 ~~~~~~~~~~gi~~~~~~~v~~i~~~---~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l------~---~~~~~~~  248 (290)
                      ..+.+.++..|++++.+.........   ...+.+...+|+  ++++|.+++|+|..|.....      +   ....+++
T Consensus        98 ~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~  177 (233)
T d1xdia1          98 ADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQ  177 (233)
T ss_dssp             HHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCC
T ss_pred             cceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhc
Confidence            34556678889999877543211111   122556667775  68999999999988754211      1   1223456


Q ss_pred             cCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          249 LDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       249 ~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      ++++|+|.||+++|| +.|+|||+|||++.+...+
T Consensus       178 ~~~~G~I~vd~~~~T-~~~gIyA~GDv~~~~~l~~  211 (233)
T d1xdia1         178 LGRGNYLTVDRVSRT-LATGIYAAGDCTGLLPLAS  211 (233)
T ss_dssp             CBTTTBCCCCSSSBC-SSTTEEECSGGGTSCSCHH
T ss_pred             ccCCCcCCcCCCccc-CCCCEEEEEEeCCCchhHH
Confidence            788999999999998 7999999999998775543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.1e-17  Score=114.27  Aligned_cols=104  Identities=17%  Similarity=0.148  Sum_probs=92.6

Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .........+++++|||+|+.|+|+|..+..  .+.+|+++++.+++++.+++++.+.+.+.++++||+++.++.++.+.
T Consensus        12 ~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~   89 (116)
T d1gesa2          12 DGFFALPALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVV   89 (116)
T ss_dssp             HHHHHCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEE
T ss_pred             HHHhChhhCCCEEEEECCChhhHHHHHHhhc--cccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            3334444567999999999999999999986  58999999999999999999999999999999999999999999988


Q ss_pred             cCCCc-eeEEcCCCcEEeccEEEEccC
Q 022896          207 VSEGS-DTYLTSTGDTINADCHFLCTG  232 (290)
Q Consensus       207 ~~~~~-~~v~~~~g~~~~~d~vv~a~G  232 (290)
                      .++++ +.+.+++|+++++|.|++|+|
T Consensus        90 ~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          90 KNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             ECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            76554 788899999999999999998

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.73  E-value=4.1e-18  Score=131.57  Aligned_cols=62  Identities=19%  Similarity=0.338  Sum_probs=45.7

Q ss_pred             EEeccEEEEccCC-CCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          221 TINADCHFLCTGK-PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       221 ~~~~d~vv~a~G~-~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      ...++.++++.|. .|....+....++++++++|+|.||+++|| |.|+|||+|||++.+...+
T Consensus       146 ~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~T-svpgVyAaGDv~~~~~l~~  208 (229)
T d1ojta1         146 IVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQPMLAH  208 (229)
T ss_dssp             EEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTCSSCCHH
T ss_pred             ceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccC-CCCCEEEEEecCCCcchHH
Confidence            4556666666664 444444333445557899999999999998 8999999999998875443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=9.6e-18  Score=129.81  Aligned_cols=58  Identities=19%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             cEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          225 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       225 d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      +..+.++|..|+.+.|....+++++++.|++.||++++| +.|+|||+||++..+...+
T Consensus       155 ~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T-~~~~v~A~GD~~~g~~l~~  212 (233)
T d1v59a1         155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDVTFGPMLAH  212 (233)
T ss_dssp             EEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGGSSSCCCHH
T ss_pred             cccceecccccCCCCcCchhcCeEEcCCCcEEECCeEec-CCCCEEEEcCCcccHHHHH
Confidence            344448888888876665556668899999999999998 7999999999998876543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.73  E-value=9.8e-18  Score=124.81  Aligned_cols=141  Identities=20%  Similarity=0.218  Sum_probs=97.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-ChhHHHHHH----------HHHHhCCcEEEeCceEeec
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-GPKAGDKTR----------DWLISKKVDVKLGERVNLD  205 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~gi~~~~~~~v~~i  205 (290)
                      .+|+|||+|++|+|+|..|........++++.+.  ....+ .+.+...+.          +.....+++++.+..++++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   81 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE--AERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   81 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS--CSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc--cccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccc
Confidence            5699999999999999999876334444444433  22221 122222221          2234568999999999776


Q ss_pred             ccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhccccc-ccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL-KDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~-~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      ..+.  ..+.+.+|+++++|.+++|+|..|+..++..... ...+..++.|.||+++|+ +.|+|||+|||+..++..
T Consensus        82 ~~~~--~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~~t-s~~~IyA~GD~a~~~~~~  156 (183)
T d1d7ya1          82 DPQA--HTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGRT-TCPDVYALGDVTRQRNPL  156 (183)
T ss_dssp             ETTT--TEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTCBC-SSTTEEECGGGEEEECTT
T ss_pred             cccc--ceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEeccceec-cccccchhhhhhccceee
Confidence            6544  3566789999999999999999987644432211 001234567999999998 799999999999877654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.72  E-value=4.7e-17  Score=111.68  Aligned_cols=106  Identities=25%  Similarity=0.364  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeC
Q 022896          121 ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      +.+.++..+.+.....++++|||+|+.|+|+|..+.+  .+.+|+++++.+++++ .+++.+.+.+.+.++++||+++.+
T Consensus        15 rtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~   92 (121)
T d1d7ya2          15 RTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFE   92 (121)
T ss_dssp             CSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEES
T ss_pred             CCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhc--ccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeC
Confidence            4556666677777788999999999999999999997  4999999999999886 578999999999999999999999


Q ss_pred             ceEeecccCCCceeEEcCCCcEEeccEEEEccC
Q 022896          200 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG  232 (290)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G  232 (290)
                      +.++++..  +  .+.+.+|+++++|.|++|+|
T Consensus        93 ~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          93 RSVTGSVD--G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             CCEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred             CEEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence            99977653  2  46778999999999999997

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.72  E-value=2.8e-20  Score=144.13  Aligned_cols=164  Identities=17%  Similarity=0.127  Sum_probs=99.6

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccc-eEEeeeeee
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNG-RIVASPAIN   86 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~   86 (290)
                      +....++|+||||||+||++|.+|++ |++|+|+|+++.+|+.|......................+... .........
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLA  124 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeeee
Confidence            34467999999999999999999976 9999999999999987765433211110000000000000000 000000011


Q ss_pred             eecceEEecCceEEeccEEEEccCCCCCCCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHHhhhCC
Q 022896           87 ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQ------KIKSARSILIVGGGPTGVELAGEIAVDFP  160 (290)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~~~~~~~~~~------~~~~~~~v~iiG~g~~~~~~a~~l~~~~~  160 (290)
                      .....+..++..++.||++|+|||..+..|...............      ....+++++|+|+|.+|+|+|..|..  .
T Consensus       125 ~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~  202 (233)
T d1djqa3         125 LGQKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEE--A  202 (233)
T ss_dssp             CSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTS--S
T ss_pred             cccccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHh--c
Confidence            111123333344678999999999987655422222221111111      11356899999999999999999996  4


Q ss_pred             CCeEEEEecCcccc
Q 022896          161 EKKVTLVHKGSRLL  174 (290)
Q Consensus       161 ~~~v~~~~~~~~~~  174 (290)
                      +.+|+++++++.+.
T Consensus       203 g~~Vtli~r~~~~~  216 (233)
T d1djqa3         203 NPQIAIPYKRETIA  216 (233)
T ss_dssp             CTTSCCCCCCCCCC
T ss_pred             CCceEEEEeccccc
Confidence            88899999887754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.71  E-value=8.1e-17  Score=117.95  Aligned_cols=131  Identities=24%  Similarity=0.445  Sum_probs=98.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhH-------------HHHHHHHHHhCCcEEEeCceEe
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA-------------GDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      .|++|||+|+.|+|+|..|..   +.+|+++++.+.+. ...+.+             .....+.+++.+++++.++.++
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   76 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVPY-YSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK   76 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT---TSEEEEECSSSSCC-CCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred             CeEEEECCcHHHHHHHHHHHc---CCCEEEEecccccc-ccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccc
Confidence            389999999999999999974   66999998765432 111111             2223456778899999999997


Q ss_pred             ecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896          204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      .++...  . +...+++++++|.+++|+|.+| .+++...++..    ++.+.+|+++|+ +.|+|||+|||+..+.
T Consensus        77 ~i~~~~--~-~~~~~~~~i~~D~li~a~G~~~-~~~~~~~gl~~----~~~i~v~~~~~t-~~~~i~aiGD~~~~~~  144 (167)
T d1xhca1          77 LIDRGR--K-VVITEKGEVPYDTLVLATGAPN-VDLARRSGIHT----GRGILIDDNFRT-SAKDVYAIGDCAEYSG  144 (167)
T ss_dssp             EEETTT--T-EEEESSCEEECSEEEECCCEEC-CHHHHHTTCCB----SSSEECCTTSBC-SSTTEEECGGGEEBTT
T ss_pred             cccccc--c-cccccccccccceeEEEEEecC-CchhhhcCcee----CCceeeccccEe-cCCCeEEeeecccCCC
Confidence            775432  2 3344666899999999999986 56777766632    345999999998 7999999999987654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.2e-17  Score=127.18  Aligned_cols=140  Identities=21%  Similarity=0.288  Sum_probs=104.1

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhH-----------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA-----------------------------------  181 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------------------  181 (290)
                      .+++|||+|..|+++|..|+++.+..+|+++.+.+.+ ++..+.+                                   
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~-py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL-PYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   83 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC-CBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC-CccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence            4689999999999999999987777889999865432 1110000                                   


Q ss_pred             --HHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC-CchhhcccccccccCCCCcEEec
Q 022896          182 --GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV-GSDWLKDTILKDSLDTHGMLMVD  258 (290)
Q Consensus       182 --~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~-~~~~l~~~~~~~~~~~~g~~~v~  258 (290)
                        .......+++.||+++.++.|++++.+++  .+.+++|++++||.+|+|+|..| +.++....++.+. +..|.+.||
T Consensus        84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~-~~~~~i~vd  160 (213)
T d1m6ia1          84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEID-SDFGGFRVN  160 (213)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBC-TTTCSEECC
T ss_pred             hhhhhhHHHHHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeeeecchhhhhhccchhhh-hhhhhhhhh
Confidence              11112335678999999999988866544  57788999999999999999654 4466666666432 345789999


Q ss_pred             CCccccCCCCeEEeccccCccccc
Q 022896          259 ENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       259 ~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +++|+ + ++|||+|||+..++..
T Consensus       161 ~~l~~-~-~~VyA~GD~a~~~~~~  182 (213)
T d1m6ia1         161 AELQA-R-SNIWVAGDAACFYDIK  182 (213)
T ss_dssp             TTCEE-E-TTEEECGGGEEEEETT
T ss_pred             HhcCc-C-CceEEeeeeeeecccc
Confidence            99997 4 9999999999877654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.70  E-value=1.4e-16  Score=109.13  Aligned_cols=100  Identities=19%  Similarity=0.283  Sum_probs=89.3

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-  211 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-  211 (290)
                      ..+++++|+|+|+.|+|+|..+... ..+.+|+++++.+.+++.+++++.+.+.+.++++||++++++.+++++.++++ 
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            4579999999999999999887654 24789999999999999999999999999999999999999999999765444 


Q ss_pred             eeEEcCCCcEEeccEEEEccCC
Q 022896          212 DTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       212 ~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      ..+.+++|++++||.|++|+|.
T Consensus        96 ~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          96 RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEEEETTSCEEEESEEEECSCE
T ss_pred             EEEEECCCCEEEcCEEEEecCC
Confidence            6788899999999999999983

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=9.7e-17  Score=125.48  Aligned_cols=100  Identities=15%  Similarity=0.211  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCch---------hhccccccccc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSD---------WLKDTILKDSL  249 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~---------~l~~~~~~~~~  249 (290)
                      .+.+.+.+.+++.|++++++++|+++..+++. ..+.+.+|+++.+|.||+|+|....+.         +++..+..+..
T Consensus       111 ~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~  190 (251)
T d2i0za1         111 SVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITE  190 (251)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeeeee
Confidence            57778888999999999999999999887776 457888999999999999999764332         33433332210


Q ss_pred             CCCCcEEec----CCccccCCCCeEEeccccCcc
Q 022896          250 DTHGMLMVD----ENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       250 ~~~g~~~v~----~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      .....+.+.    ..+..+..|++|++|++....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~  224 (251)
T d2i0za1         191 LFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIH  224 (251)
T ss_dssp             EEEEEECGGGEETTTTEESSSBTEEECGGGBSCB
T ss_pred             eeecccCccccCchhHHHhcCCCcEeeeeEEEcc
Confidence            001111111    123334689999999987543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.7e-16  Score=111.75  Aligned_cols=112  Identities=19%  Similarity=0.212  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhh--CCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEe
Q 022896          122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD--FPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKL  198 (290)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~--~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~  198 (290)
                      .+.++..+.+.....++++|+|+|..|+|+|..|...  ..+.+|+++++.+.++. .+++++.+.+.+.++++||+++.
T Consensus        23 ~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~  102 (137)
T d1m6ia2          23 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP  102 (137)
T ss_dssp             SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred             CHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence            4556666666677899999999999999999998642  24889999999998886 47889999999999999999999


Q ss_pred             CceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      ++.|++++.+++...+.+++|+++++|.|++|+|.
T Consensus       103 ~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         103 NAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             SCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             CCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            99999999888888999999999999999999983

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.69  E-value=1e-16  Score=109.22  Aligned_cols=96  Identities=19%  Similarity=0.177  Sum_probs=86.7

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC-ce
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD  212 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~~  212 (290)
                      ..+++++|+|+|..|+|+|..+..  .+.+|+++++.+++++.+++++.+.+.+.++++||+++.++.+++++..++ .+
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~   97 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL   97 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE
T ss_pred             CCCCEEEEECCchHHHHHHHHHHh--ccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE
Confidence            457999999999999999999986  699999999999999999999999999999999999999999999975544 47


Q ss_pred             eEEcCCCcEE-eccEEEEcc
Q 022896          213 TYLTSTGDTI-NADCHFLCT  231 (290)
Q Consensus       213 ~v~~~~g~~~-~~d~vv~a~  231 (290)
                      .+.+.+|+.+ .+|.|++|.
T Consensus        98 ~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          98 SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EEEETTSCEEEEESEEEECC
T ss_pred             EEEECCCCEEEeCCEEEEeC
Confidence            8899999877 479999984

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.67  E-value=3.5e-16  Score=107.13  Aligned_cols=102  Identities=18%  Similarity=0.216  Sum_probs=90.6

Q ss_pred             HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccC
Q 022896          129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  208 (290)
Q Consensus       129 ~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~  208 (290)
                      .++....+++++|+|+|+.|+|+|..++.  .+.+|+++.+.+++++.+++++...+.+.+++.|++++.++.+++++.+
T Consensus        15 ~l~l~~~p~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~   92 (119)
T d3lada2          15 ALDFQNVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVK   92 (119)
T ss_dssp             HTSCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEEC
T ss_pred             hhCcccCCCeEEEECCChHHHHHHHHHHH--cCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEe
Confidence            33334567999999999999999999997  5999999999999999999999999999999999999999999999998


Q ss_pred             CCceeEEcCCC---cEEeccEEEEccC
Q 022896          209 EGSDTYLTSTG---DTINADCHFLCTG  232 (290)
Q Consensus       209 ~~~~~v~~~~g---~~~~~d~vv~a~G  232 (290)
                      +++..++..++   +++.+|.|++|+|
T Consensus        93 ~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          93 NKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             SSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             CCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            88877765443   4799999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.67  E-value=3.4e-16  Score=106.94  Aligned_cols=101  Identities=20%  Similarity=0.255  Sum_probs=88.3

Q ss_pred             HHHhcCCeEEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCC
Q 022896          131 QKIKSARSILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  209 (290)
Q Consensus       131 ~~~~~~~~v~iiG~g~~~~~~a~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~  209 (290)
                      .....+++++|+|+|+.|+|+|..+.... .+.+|+++++.+.+++.+++++.+.+.+.++++||++++++.+++++...
T Consensus        15 ~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~   94 (117)
T d1aoga2          15 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNA   94 (117)
T ss_dssp             TCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECT
T ss_pred             CchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcC
Confidence            33346799999999999999998887642 35689999999999999999999999999999999999999999997654


Q ss_pred             C-ceeEEcCCCcEEeccEEEEcc
Q 022896          210 G-SDTYLTSTGDTINADCHFLCT  231 (290)
Q Consensus       210 ~-~~~v~~~~g~~~~~d~vv~a~  231 (290)
                      + ...+.+++|++++||.|++|.
T Consensus        95 ~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          95 DGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TSCEEEEETTSCEEEESEEEECS
T ss_pred             CCeEEEEECCCcEEEeCEEEEeC
Confidence            4 578899999999999999984

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=8.8e-17  Score=123.18  Aligned_cols=92  Identities=21%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             HHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch----hhcccc---cccccCCCCcEEe
Q 022896          185 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD----WLKDTI---LKDSLDTHGMLMV  257 (290)
Q Consensus       185 ~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~----~l~~~~---~~~~~~~~g~~~v  257 (290)
                      ....+...+++++.+....  . +..  .+ ..++..+.+|.+++|+|..|...    .....+   +.+. .++|++.|
T Consensus       102 ~~~~~~~~~v~~i~G~~~~--~-~~~--~~-~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~-~~~g~i~v  174 (220)
T d1lvla1         102 VAALLKKHGVKVVHGWAKV--L-DGK--QV-EVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLK-MNGAAIAI  174 (220)
T ss_dssp             HHHHHHHTTCEEECSCEEE--E-ETT--EE-EETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCC-EETTEECC
T ss_pred             hhhhhccCceEEEEeeecc--c-Ccc--cc-cccceeEeeceeeEcCCCCcccccccccccCCcceeeehh-hcCCcccc
Confidence            3445556677777664331  1 111  11 12456899999999999887531    111111   1111 24688999


Q ss_pred             cCCccccCCCCeEEeccccCccccccC
Q 022896          258 DENLRVKGQKNIFAIGDITDIRVSASM  284 (290)
Q Consensus       258 ~~~~~~~~~~~vfa~Gd~~~~~~~~~~  284 (290)
                      |+++|| +.|+|||+|||++.+...+.
T Consensus       175 d~~~~T-~~~~I~A~GDv~~~~~l~~~  200 (220)
T d1lvla1         175 DERCQT-SMHNVWAIGDVAGEPMLAHR  200 (220)
T ss_dssp             CTTCBC-SSTTEEECGGGGCSSCCHHH
T ss_pred             cchhhc-CCCCEEEEEEeCCcccchhh
Confidence            999998 79999999999998776543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.66  E-value=3.4e-17  Score=127.27  Aligned_cols=63  Identities=25%  Similarity=0.312  Sum_probs=49.7

Q ss_pred             cEEeccEEEEccCCCCCchh--------hcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          220 DTINADCHFLCTGKPVGSDW--------LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       220 ~~~~~d~vv~a~G~~~~~~~--------l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                      +.+++|.+++++|..|...-        |.....+++++++|+|.||+++|| +.|+|||+|||++.+...+
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-s~~~iyA~GDv~~~~~~~~  218 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTDRVMLTP  218 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGCSCCCHH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCc-CCCCEEEEEECCCCccchh
Confidence            47899999999998875321        112234457899999999999998 8999999999999876554

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1e-15  Score=106.86  Aligned_cols=110  Identities=22%  Similarity=0.324  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeC
Q 022896          121 ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      ..+.+...+.+....+++++|||+|+.|+|+|..+.+  .+.+|+++++.+++++. +++.+.+.+.+.++++||+++++
T Consensus        20 r~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~   97 (133)
T d1q1ra2          20 RTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTG   97 (133)
T ss_dssp             SSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECS
T ss_pred             CCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHh--hCcceeeeeecccccccccchhhhhhhhhcccccccEEEeC
Confidence            4555666666666778999999999999999999997  59999999999998764 68889999999999999999999


Q ss_pred             ceEeecccCCCc---eeEEcCCCcEEeccEEEEccC
Q 022896          200 ERVNLDSVSEGS---DTYLTSTGDTINADCHFLCTG  232 (290)
Q Consensus       200 ~~v~~i~~~~~~---~~v~~~~g~~~~~d~vv~a~G  232 (290)
                      +.++.++...+.   ..+.+++|+++++|.|++|+|
T Consensus        98 ~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          98 TQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             CeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999988765443   446789999999999999997

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=6.1e-16  Score=120.98  Aligned_cols=101  Identities=10%  Similarity=0.056  Sum_probs=68.1

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--ee-EEcCCCcEEeccEEEEccCCCCCc---------hhhccccc
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DT-YLTSTGDTINADCHFLCTGKPVGS---------DWLKDTIL  245 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~-v~~~~g~~~~~d~vv~a~G~~~~~---------~~l~~~~~  245 (290)
                      ...+.+.+.+.+++.|+++++++.|++++..++.  .. +...+++++.+|.||+|+|-.+.+         .++++.++
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~  187 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence            3467888899999999999999999998765554  22 344566789999999999976433         23333333


Q ss_pred             ccc---cCCCCcEE---ecC-CccccCCCCeEEeccccCc
Q 022896          246 KDS---LDTHGMLM---VDE-NLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       246 ~~~---~~~~g~~~---v~~-~~~~~~~~~vfa~Gd~~~~  278 (290)
                      .+.   ....|.+.   +|. ++++...|++|++|-+.+.
T Consensus       188 ~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv  227 (253)
T d2gqfa1         188 PVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDV  227 (253)
T ss_dssp             CEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSC
T ss_pred             cccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEe
Confidence            221   00112232   332 5777789999999977654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=5.6e-16  Score=106.72  Aligned_cols=113  Identities=19%  Similarity=0.313  Sum_probs=92.8

Q ss_pred             CCCCCc----hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHH
Q 022896          113 DPVPKT----RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDW  188 (290)
Q Consensus       113 ~~~p~~----~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  188 (290)
                      |.+|+.    ....+.+...+.+.....++++|+|+|++|+|+|..|..  .+.+|+++++.+.+++ +++++.+.+.+.
T Consensus         5 p~ipG~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~l~~-~d~~~~~~~~~~   81 (122)
T d1xhca2           5 PQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFLG-LDEELSNMIKDM   81 (122)
T ss_dssp             CCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSCCTT-CCHHHHHHHHHH
T ss_pred             cCCCCccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhc--ccceEEEEeccccccC-CCHHHHHHHHHH
Confidence            556662    223456666666777778999999999999999999997  5999999999998875 899999999999


Q ss_pred             HHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          189 LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       189 ~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      ++++|+++++++.+++++.+  +  + ..+++.+++|.+++|+|.
T Consensus        82 l~~~GV~~~~~~~v~~~~~~--~--v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          82 LEETGVKFFLNSELLEANEE--G--V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHTTEEEECSCCEEEECSS--E--E-EETTEEEECSCEEEECCE
T ss_pred             HHHCCcEEEeCCEEEEEeCC--E--E-EeCCCEEECCEEEEEEEe
Confidence            99999999999999777543  2  2 346778999999999984

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.3e-16  Score=118.50  Aligned_cols=93  Identities=24%  Similarity=0.246  Sum_probs=64.8

Q ss_pred             HHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcc------cccccccCCCCcEE
Q 022896          183 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD------TILKDSLDTHGMLM  256 (290)
Q Consensus       183 ~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~------~~~~~~~~~~g~~~  256 (290)
                      ......+++.||++...........      ....+++.+.++.+++|+|..|..+-++.      ....+.+++++++.
T Consensus        95 ~~~~~~l~~~gV~v~~~~~~~~~~~------~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~  168 (217)
T d1gesa1          95 TSYENVLGKNNVDVIKGFARFVDAK------TLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIV  168 (217)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEETT------EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBC
T ss_pred             HHHHHHHhCCeEEEEeeecccceee------eecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEe
Confidence            3344556778888876654422111      12235678999999999998876543321      12245678899999


Q ss_pred             ecCCccccCCCCeEEeccccCccccc
Q 022896          257 VDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       257 v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +|..+++ +.|+||++||+......+
T Consensus       169 ~d~~~~t-~~~~i~~iG~g~~g~ela  193 (217)
T d1gesa1         169 VDKYQNT-NIEGIYAVGDNTGAVELT  193 (217)
T ss_dssp             CCTTSBC-SSTTEEECSGGGTSCCCH
T ss_pred             eCchhcc-CCCcEEEECCCccHHHHH
Confidence            9999998 799999999999876544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.65  E-value=1.1e-16  Score=110.30  Aligned_cols=107  Identities=11%  Similarity=0.106  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       125 ~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      +..........+++++|+|+|..|+|+|..+..  .+.+|+++++.+++++.+++++.+.+.+.++++|++++.++.+++
T Consensus        15 ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~--~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~   92 (125)
T d1ojta2          15 DSSGALALKEVPGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVA   92 (125)
T ss_dssp             CHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred             cHHHhhCccccCCeEEEECCCHHHHHHHHHhhc--CCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEE
Confidence            344444444568999999999999999999997  499999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeEE--cCCC--cEEeccEEEEccCC
Q 022896          205 DSVSEGSDTYL--TSTG--DTINADCHFLCTGK  233 (290)
Q Consensus       205 i~~~~~~~~v~--~~~g--~~~~~d~vv~a~G~  233 (290)
                      ++.++++..+.  ..+|  +++++|.|++|+|.
T Consensus        93 v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          93 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            98887775554  3444  37999999999983

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.64  E-value=3.9e-16  Score=106.84  Aligned_cols=102  Identities=23%  Similarity=0.260  Sum_probs=87.6

Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .........+++++|+|+|+.|+|+|..+..  .+.+|+++++.+++++.+++++.+.+.+.++++||+++.++.+++++
T Consensus        13 ~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~   90 (117)
T d1ebda2          13 TGALNLGEVPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAE   90 (117)
T ss_dssp             HHHHTCSSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             hHhhChhhcCCeEEEECCCccceeeeeeecc--cccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            3344444567999999999999999999987  59999999999999999999999999999999999999999999998


Q ss_pred             cCCCceeEEc-CCC--cEEeccEEEEc
Q 022896          207 VSEGSDTYLT-STG--DTINADCHFLC  230 (290)
Q Consensus       207 ~~~~~~~v~~-~~g--~~~~~d~vv~a  230 (290)
                      ..+++..+.. .+|  +++++|.|+++
T Consensus        91 ~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          91 EREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            8777766654 334  46899999974

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=4e-17  Score=119.31  Aligned_cols=121  Identities=18%  Similarity=0.228  Sum_probs=77.0

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEE-eeee
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV-ASPA   84 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v   84 (290)
                      +....++|+|||||||||+||++|++ |++|+|||+.+.+|+.+.............+....+.+.++  ++++. +.. 
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~-  117 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT-  117 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC-
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE-
Confidence            34457999999999999999999975 99999999999999765533222111111111112222221  22221 111 


Q ss_pred             eeeecceEEecCceEEeccEEEEccCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 022896           85 INITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVEL  151 (290)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~  151 (290)
                             +. .+ ....||.+|+|+|..|..+...            ....++++.|+|++..++++
T Consensus       118 -------Vt-~~-~~~~~d~vilAtG~~~~~~~~p------------g~~~g~~v~vigggd~a~~~  163 (179)
T d1ps9a3         118 -------VT-AD-QLQAFDETILASGIPNRALAQP------------LIDSGKTVHLIGGCDVAMEL  163 (179)
T ss_dssp             -------CC-SS-SSCCSSEEEECCCEECCTTHHH------------HHTTTCCEEECGGGTCCSSC
T ss_pred             -------Ec-cc-ccccceeEEEeecCCCcccccc------------hhccCCEEEEECCcHhhhhc
Confidence                   11 12 2357999999999987655421            12358999999998877664

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.62  E-value=4e-15  Score=110.42  Aligned_cols=143  Identities=20%  Similarity=0.222  Sum_probs=101.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCCh----------hHHHHHHHHHHhCCcEEEeCceEee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP----------KAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      .+||++|||+|+.|+++|..|.+..+..+|+++++.+.+......          .........+...++++..+..+  
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--   78 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSAT--   78 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEE--
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeE--
Confidence            379999999999999999999987667899999988765433211          11111223456678888776554  


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccc-----cCCCCcEEecC-CccccCCCCeEEeccccCc
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS-----LDTHGMLMVDE-NLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~-----~~~~g~~~v~~-~~~~~~~~~vfa~Gd~~~~  278 (290)
                       ..+.....+.+.+++++++|.+++|+|.+|+.+++........     ...++++.++. .++.+++++||++||++..
T Consensus        79 -~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~  157 (186)
T d1fcda1          79 -GIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIA  157 (186)
T ss_dssp             -ECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEEC
T ss_pred             -eeeeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEecccccc
Confidence             3334445567788899999999999999998877665433211     23456666665 4666689999999999876


Q ss_pred             cc
Q 022896          279 RV  280 (290)
Q Consensus       279 ~~  280 (290)
                      ..
T Consensus       158 ~~  159 (186)
T d1fcda1         158 NP  159 (186)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.62  E-value=6.7e-16  Score=122.71  Aligned_cols=67  Identities=21%  Similarity=0.097  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhccccccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKD  247 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~  247 (290)
                      ..+...+.+.+++.|++++.+++|++++.+++++.|.+++| ++.+|.||+|+|.+. ..+++..++..
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s-~~l~~~lg~~~  216 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN-SKLLSKLNLDI  216 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH-HHHGGGGTEEC
T ss_pred             cccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcc-hhhHHhcCCcc
Confidence            46888899999999999999999999999999999999887 699999999999885 67888777653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.61  E-value=1.7e-15  Score=112.68  Aligned_cols=139  Identities=18%  Similarity=0.242  Sum_probs=97.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--ccC-------------ChhHHHHHHHHHHhCCcEEEeC
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EFI-------------GPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      ..++|+|||+|++|+|+|..|..+  +.+++++...+...  ...             ...............+.++..+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGG   79 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHc--CCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecc
Confidence            367999999999999999999975  54554444333211  110             1112222344566778888888


Q ss_pred             ceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC---chhhcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896          200 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG---SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  276 (290)
Q Consensus       200 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~---~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~  276 (290)
                      ..++.+..  +...+...++.++++|.+++++|..|+   ..+++..++    ..+|.+.||+++|+ +.|+||++|||+
T Consensus        80 ~~~~~~~~--~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~----~~~~~i~Vd~~~~t-s~~~vya~GD~~  152 (185)
T d1q1ra1          80 TQVTAINR--DRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGL----QVDNGIVINEHMQT-SDPLIMAVGDCA  152 (185)
T ss_dssp             CCEEEEET--TTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTC----CBSSSEECCTTSBC-SSTTEEECGGGE
T ss_pred             ceeeeecc--cccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCc----cccCccccCCcccc-chhhhhcchhhh
Confidence            87765544  344566778889999999999998764   344454443    34678999999998 799999999999


Q ss_pred             Cccccc
Q 022896          277 DIRVSA  282 (290)
Q Consensus       277 ~~~~~~  282 (290)
                      ..+...
T Consensus       153 ~~~~~~  158 (185)
T d1q1ra1         153 RFHSQL  158 (185)
T ss_dssp             EEEETT
T ss_pred             cccccc
Confidence            887643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.61  E-value=1.9e-15  Score=119.72  Aligned_cols=65  Identities=11%  Similarity=-0.085  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccc
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK  246 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~  246 (290)
                      .+...+.+.+++.|++++.+++|+.++.+++.+.|.+++| ++.||.||+|+|.+. ..+++..++.
T Consensus       152 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s-~~l~~~~G~~  216 (276)
T d1ryia1         152 FVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS-GMFFKQLGLN  216 (276)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT-HHHHHHTTCC
T ss_pred             cchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH-HHHHhhcCCC
Confidence            6788888999999999999999999998887888888887 699999999999985 6788887764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=9.5e-16  Score=105.35  Aligned_cols=96  Identities=18%  Similarity=0.294  Sum_probs=83.5

Q ss_pred             HhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-
Q 022896          133 IKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-  211 (290)
Q Consensus       133 ~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-  211 (290)
                      ...+++++|||+|+.|+|+|..+..  .+.+|+++++.+++++.+++++.+.+.+.++++||++++++.+++++.++++ 
T Consensus        20 ~~~p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~   97 (122)
T d1v59a2          20 KEIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKN   97 (122)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTT
T ss_pred             ccCCCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCc
Confidence            3467999999999999999999997  5999999999999999999999999999999999999999999999876665 


Q ss_pred             -eeEEcCCC-----cEEeccEEEEc
Q 022896          212 -DTYLTSTG-----DTINADCHFLC  230 (290)
Q Consensus       212 -~~v~~~~g-----~~~~~d~vv~a  230 (290)
                       +.+...++     +++++|.|++|
T Consensus        98 ~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          98 VVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEEEeCCCCCeEEEEeCEEEEC
Confidence             33343332     47999999986

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=2.3e-15  Score=102.48  Aligned_cols=95  Identities=20%  Similarity=0.241  Sum_probs=82.0

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  213 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~  213 (290)
                      ..+++++|+|+|+.|+|+|..+.+.  +.+|+++++.+++++.+++++.+.+.+.++++||+++.++.|++++  ++...
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~--g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~   94 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE--NGCLL   94 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEE--TTEEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhc--ccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEc--CCeEE
Confidence            4579999999999999999999974  8999999999999999999999999999999999999999998775  33333


Q ss_pred             EEcCC--CcEEeccEEEEccC
Q 022896          214 YLTST--GDTINADCHFLCTG  232 (290)
Q Consensus       214 v~~~~--g~~~~~d~vv~a~G  232 (290)
                      ....+  ++++++|.|++|+|
T Consensus        95 ~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          95 ANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EECSSSCCCEECCSCEEECCC
T ss_pred             EEEcCCCeEEEEcCEEEEecC
Confidence            33333  35799999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.60  E-value=1.3e-14  Score=99.71  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHh--cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEE
Q 022896          121 ERLNQYQAENQKIK--SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVK  197 (290)
Q Consensus       121 ~~~~~~~~~~~~~~--~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~  197 (290)
                      +.+.+.....+...  .+++++|+|+|+.|+|+|..+..  .+.+|+++++.+++++ .+++++.+.+.+.++++|++++
T Consensus        13 ~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~--~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~   90 (123)
T d1nhpa2          13 RGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIA   90 (123)
T ss_dssp             CHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEE
T ss_pred             CCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhc--cceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEE
Confidence            34455555555443  57899999999999999999997  4999999999998876 4799999999999999999999


Q ss_pred             eCceEeecccCCCceeEEcCCCcEEeccEEEEcc
Q 022896          198 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCT  231 (290)
Q Consensus       198 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~  231 (290)
                      .++.+++++.++ .......+|++++||.|++|.
T Consensus        91 ~~~~v~~i~~~~-~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          91 TGETVERYEGDG-RVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             ESCCEEEEECSS-BCCEEEESSCEEECSEEEECS
T ss_pred             eCceEEEEEcCC-CEEEEEeCCCEEECCEEEEEC
Confidence            999999988654 333445688899999999984

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.59  E-value=8.2e-15  Score=100.89  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-  213 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-  213 (290)
                      ++++++|+|+|++|+|+|..+..  .+.+++++++.+.+++.+++++...+.+.++++|+++++++.+++++.++++.. 
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~   98 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQ   98 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--cchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEE
Confidence            57999999999999999999986  599999999999999999999999999999999999999999999987766521 


Q ss_pred             -E---EcCCCcEEeccEEEEccC
Q 022896          214 -Y---LTSTGDTINADCHFLCTG  232 (290)
Q Consensus       214 -v---~~~~g~~~~~d~vv~a~G  232 (290)
                       +   ...+++++++|.|++|+|
T Consensus        99 ~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          99 AVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEEETTEEEEEECSCEEECCC
T ss_pred             EEEEEeCCCCEEEEcCEEEEEEC
Confidence             1   234556899999999997

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-15  Score=104.28  Aligned_cols=97  Identities=20%  Similarity=0.229  Sum_probs=84.6

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  213 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~  213 (290)
                      ..+++++|+|+|+.|+|+|..+..  .+.+|+++++++++++.+++++.+.+.+.++++||+++.++.+++++.++++..
T Consensus        20 ~~pk~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~   97 (125)
T d3grsa2          20 ELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLE   97 (125)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEE
T ss_pred             hcCCEEEEEcCCccHHHHHHHHhc--CCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEE
Confidence            357999999999999999999997  599999999999999999999999999999999999999999999988777644


Q ss_pred             EE---cCCCc------EEeccEEEEccC
Q 022896          214 YL---TSTGD------TINADCHFLCTG  232 (290)
Q Consensus       214 v~---~~~g~------~~~~d~vv~a~G  232 (290)
                      +.   ...|.      .+++|.|++|+|
T Consensus        98 v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          98 VSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEEEccCCcCcCccccccCCEEEEEeC
Confidence            43   23332      467999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.58  E-value=2.6e-15  Score=103.34  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=87.5

Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      ...+.....+++++|+|+|..|+|+|..+..  .+.+|+++++.+++++.+++++...+.+.++++||+++.++.+++++
T Consensus        16 ~~~l~l~~~p~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~   93 (123)
T d1dxla2          16 TGALALSEIPKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVD   93 (123)
T ss_dssp             HHHTTCSSCCSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEE
T ss_pred             HHhhCccccCCeEEEEccchHHHHHHHHHHh--cCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEE
Confidence            3344444568999999999999999999997  49999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEE--c-CCC--cEEeccEEEEcc
Q 022896          207 VSEGSDTYL--T-STG--DTINADCHFLCT  231 (290)
Q Consensus       207 ~~~~~~~v~--~-~~g--~~~~~d~vv~a~  231 (290)
                      .++++..+.  . ++|  +++++|.|++|+
T Consensus        94 ~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          94 TSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             CSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            877775543  3 233  358999999874

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=1.7e-14  Score=107.70  Aligned_cols=137  Identities=23%  Similarity=0.230  Sum_probs=104.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-----------------c----cCChhHHHHHHHHHHhCCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----------------E----FIGPKAGDKTRDWLISKKV  194 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-----------------~----~~~~~~~~~~~~~~~~~gi  194 (290)
                      .++|+|||+|++|+++|..+..  .+.++.++++.....                 .    ...+++...+++.+++.|+
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~   82 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT   82 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             cceEEEECCCHHHHHHHHHHHH--cCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcc
Confidence            4789999999999999999986  588888887554311                 0    0134677778888889999


Q ss_pred             EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC-----CCCchhhcccccccccCCCCcEEecC-CccccCCCC
Q 022896          195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK-----PVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKN  268 (290)
Q Consensus       195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~-----~~~~~~l~~~~~~~~~~~~g~~~v~~-~~~~~~~~~  268 (290)
                      ++..+ .|..++..++.+.+.+.. ....+|.+++++|.     .|+..++..   .++++++|++.+|+ .++| +.|+
T Consensus        83 ~i~~~-~V~~~~~~~~~~~v~~~~-~~~~~~~~~~a~g~~~~g~~p~~~~~~~---~veld~~G~i~~~~~~~~T-s~~G  156 (192)
T d1vdca1          83 TIFTE-TVTKVDFSSKPFKLFTDS-KAILADAVILAIGAVAKGHEPATKFLDG---GVELDSDGYVVTKPGTTQT-SVPG  156 (192)
T ss_dssp             EEECC-CCCEEECSSSSEEEECSS-EEEEEEEEEECCCEEECCEEESCGGGTT---SSCBCTTSCBCCCTTSCBC-SSTT
T ss_pred             eeeee-eEEecccccCcEEecccc-eeeeeeeEEEEeeeeecccCchHHHhcC---ceeecCCCeEEeCCCceEe-cCCC
Confidence            99866 577777767667776554 47899999999985     455565544   23678999999997 5666 8999


Q ss_pred             eEEeccccCccc
Q 022896          269 IFAIGDITDIRV  280 (290)
Q Consensus       269 vfa~Gd~~~~~~  280 (290)
                      |||+|||.+.+.
T Consensus       157 V~a~GDv~~~~~  168 (192)
T d1vdca1         157 VFAAGDVQDKKY  168 (192)
T ss_dssp             EEECGGGGCSSC
T ss_pred             EEEeeecCCccc
Confidence            999999998764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.51  E-value=1.2e-14  Score=112.39  Aligned_cols=34  Identities=32%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      .+||++||||||||++||.++++ +. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            47999999999999999999986 65 689999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=8e-14  Score=103.86  Aligned_cols=136  Identities=18%  Similarity=0.272  Sum_probs=99.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------------cCChhHHHHHHHHHHhCCcEEEe
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------FIGPKAGDKTRDWLISKKVDVKL  198 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~gi~~~~  198 (290)
                      +.++|+|||+|++|+++|..+++  .+.+++++++.+....                ....++.+.+.+.+.+.++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar--~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF   81 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH--cCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec
Confidence            45789999999999999999985  5889999986543110                11235677788888899999986


Q ss_pred             CceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC-----chhhcccccccccCCCCcEEecC-----CccccCCCC
Q 022896          199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG-----SDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKN  268 (290)
Q Consensus       199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~-----~~~l~~~~~~~~~~~~g~~~v~~-----~~~~~~~~~  268 (290)
                      + .|+.+...++.+.+...+ ..+.++.+++++|..+.     ..++... +  ++ ++|++.++.     .+++ +.|+
T Consensus        82 ~-~V~~~~~~~~~~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~~-~--e~-~~g~i~~~~~~~~~~~~T-~v~g  154 (190)
T d1trba1          82 D-HINKVDLQNRPFRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEGQ-L--EL-ENGYIKVQSGIHGNATQT-SIPG  154 (190)
T ss_dssp             C-CEEEEECSSSSEEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTTT-S--CE-ETTEECCCCSSSSCTTBC-SSTT
T ss_pred             c-eeEEEecCCCcEEEEEee-eeEeeeeeeeecceeeeeecccceeecce-E--ec-CCcEEEEecCCccccccc-ccCe
Confidence            5 577777777767776655 47999999999997653     2233221 1  22 368898885     3466 7999


Q ss_pred             eEEeccccCcc
Q 022896          269 IFAIGDITDIR  279 (290)
Q Consensus       269 vfa~Gd~~~~~  279 (290)
                      ||++|||++.+
T Consensus       155 V~aaGDv~~~~  165 (190)
T d1trba1         155 VFAAGDVMDHI  165 (190)
T ss_dssp             EEECGGGGCSS
T ss_pred             EEEeEEecCcc
Confidence            99999998755

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.50  E-value=1.3e-13  Score=107.94  Aligned_cols=63  Identities=24%  Similarity=0.345  Sum_probs=41.5

Q ss_pred             CCcEEeccEEEEccCCCCC-----chhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          218 TGDTINADCHFLCTGKPVG-----SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       218 ~g~~~~~d~vv~a~G~~~~-----~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      +++.+++|.+++|||.+|.     .+.+......+ ++.++++.+|...++ ...++|++||++......
T Consensus       135 ~~~~i~a~~iiIATGs~P~~~~~~~~~~~l~~~~i-~ts~~~~~~d~~~~t-~Vig~gaiGdv~~~~~~~  202 (259)
T d1onfa1         135 NEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNV-ETNNNYIVVDENQRT-SVNNIYAVGDCCMVKKSK  202 (259)
T ss_dssp             -----CBSSEEECCCCCBCCBCCTTTTSSCTTTTC-CBSSSCEEECTTCBC-SSSSEEECSTTEEEC---
T ss_pred             ceEEEeeeeEEEecCCCCcccccccccccccccee-eecccccccccCCce-eEeeEEEEEEeeehhhhh
Confidence            3457999999999999983     33333222222 456788999988877 799999999998655443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=4.5e-15  Score=116.59  Aligned_cols=56  Identities=5%  Similarity=-0.219  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCC--ceeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.+.+.+.+++.|++++++++|++|..+++  .+...+.+|+++.||.||....+-|
T Consensus       237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~  294 (297)
T d2bcgg1         237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFP  294 (297)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhcc
Confidence            6888899999999999999999999976543  3554567888999999987644433

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.2e-13  Score=94.57  Aligned_cols=103  Identities=15%  Similarity=0.065  Sum_probs=82.4

Q ss_pred             HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      ..+......+++++|||+|+.|+|+|..+..  .+.+|+++.+. ++++.+++++.+.+.+.+++.||+++.++.+++++
T Consensus        11 d~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~   87 (122)
T d1h6va2          11 DDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE   87 (122)
T ss_dssp             HHHTTCSSCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEE
T ss_pred             hHHhCcccCCCeEEEECCCccHHHHHHHHhh--cCCeEEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            3344444467999999999999999999997  59999999875 67889999999999999999999999999998886


Q ss_pred             cCCC----ceeEEc--CCC-c--EEeccEEEEccC
Q 022896          207 VSEG----SDTYLT--STG-D--TINADCHFLCTG  232 (290)
Q Consensus       207 ~~~~----~~~v~~--~~g-~--~~~~d~vv~a~G  232 (290)
                      ..++    ...+..  .++ +  .+++|.|++|+|
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          88 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            5332    234433  222 2  467999999987

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.49  E-value=2.7e-15  Score=122.67  Aligned_cols=42  Identities=29%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~   51 (290)
                      ....++|+|||||++||+||++|++ |++|+|||+++.+|+..
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~   69 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   69 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCee
Confidence            4456899999999999999999986 99999999999988654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.48  E-value=2.8e-13  Score=108.56  Aligned_cols=70  Identities=19%  Similarity=-0.014  Sum_probs=57.5

Q ss_pred             ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCCCchhhccccccccc
Q 022896          178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL  249 (290)
Q Consensus       178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~  249 (290)
                      ...+...+.+.+++.|++++.+++|+++..+++.+ .|.+++| +++||.||+|+|.+. ..+++..++.++.
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s-~~l~~~~g~~lP~  217 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG-AKIGAMIGMAVPP  217 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH-HHHHHTTTCCCCT
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH-HHHHHHcCCcccc
Confidence            34688889999999999999999999999888874 4677666 799999999999985 6777776665443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.43  E-value=1e-14  Score=117.54  Aligned_cols=99  Identities=12%  Similarity=0.012  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC-C--cEEeccEEEEccCCCCCchhhccccccc-----ccCCC
Q 022896          181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-G--DTINADCHFLCTGKPVGSDWLKDTILKD-----SLDTH  252 (290)
Q Consensus       181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~-g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~-----~~~~~  252 (290)
                      +...+.+..++.|+++++++.|++|+.+++++.+...+ |  +++++|.||+|+|......++.......     .....
T Consensus       221 ~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~  300 (347)
T d2ivda1         221 LQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL  300 (347)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred             hHHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence            33344444556689999999999999888876665433 3  4689999999998653334443321110     01111


Q ss_pred             CcEE---ecCCccccCCCCeEEeccccCccc
Q 022896          253 GMLM---VDENLRVKGQKNIFAIGDITDIRV  280 (290)
Q Consensus       253 g~~~---v~~~~~~~~~~~vfa~Gd~~~~~~  280 (290)
                      |...   ...... ++.|++|++||..++..
T Consensus       301 ~~~~~~~~~~~~~-~~~p~~~~~G~~~~g~~  330 (347)
T d2ivda1         301 GHLERVAAIDAAL-QRLPGLHLIGNAYKGVG  330 (347)
T ss_dssp             THHHHHHHHHHHH-HTSTTEEECSTTTSCCS
T ss_pred             Ccccceecccccc-cCCCCEEEecccccCCC
Confidence            2110   011112 36899999999977643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.1e-14  Score=116.98  Aligned_cols=52  Identities=13%  Similarity=-0.036  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          182 GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       182 ~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      .......+++.|.+++.++.|+++..+++++.+++.+|+++++|.||+|++.
T Consensus       210 ~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         210 GQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             hHHHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            3344455667899999999999999999999999999999999999999864

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.38  E-value=3.1e-12  Score=103.16  Aligned_cols=38  Identities=32%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      .+||+|||||++||++|++|++ |++|+||||.+..++.
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~   61 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN   61 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTT
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            5899999999999999999976 9999999999876654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=5.5e-12  Score=93.14  Aligned_cols=137  Identities=21%  Similarity=0.242  Sum_probs=101.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc--cc--------cc----CChhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR--LL--------EF----IGPKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~--~~--------~~----~~~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      .|+|||+|++|+++|..+..  .+.++.++++...  ..        ..    ..+.+...++..+++.+++......+.
T Consensus         3 DViIIGgGpaGl~AAi~aar--~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSAR--KGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSAS   80 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cEEEECcCHHHHHHHHHHHH--cCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceee
Confidence            68999999999999999885  5889999986421  10        00    124566777788888899988887776


Q ss_pred             ecccCCCc---eeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896          204 LDSVSEGS---DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  279 (290)
Q Consensus       204 ~i~~~~~~---~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~  279 (290)
                      .+......   ......+++++.++.++.++|..+.........+  .....|.+.+|...++ +.|+||++|||.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~g~i~v~~~~~t-~~~gv~a~gd~~~~~  156 (184)
T d1fl2a1          81 KLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAV--ERNRMGEIIIDAKCET-NVKGVFAAGDCTTVP  156 (184)
T ss_dssp             EEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTS--CBCTTSCBCCCTTCBC-SSTTEEECSTTBSCS
T ss_pred             eecccccccceeeeeeecceeeecccccccccccccccccccccc--cccccceeccCCceee-eCCCEEEEeeecCcc
Confidence            66443332   4445566678999999999997654444443333  4567799999999998 799999999999865

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.34  E-value=2.3e-12  Score=104.61  Aligned_cols=98  Identities=15%  Similarity=0.012  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eE---EcCCCc--EEeccEEEEccCCCCCc-------hhhccccc-
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKPVGS-------DWLKDTIL-  245 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~~~~-------~~l~~~~~-  245 (290)
                      .+...+.+.+++.|++++.++.+.++..+++.+ .+   ...+|+  ++.++.||+|||--...       ......++ 
T Consensus       159 ~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~  238 (336)
T d2bs2a2         159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA  238 (336)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred             HHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence            567778888899999999999998887766652 22   245675  57899999999743211       00000111 


Q ss_pred             -----c-cccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896          246 -----K-DSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  278 (290)
Q Consensus       246 -----~-~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~  278 (290)
                           + .++.+-+++.+++..++ +.|++|++|++...
T Consensus       239 ~~~~~G~~~l~~~~~iq~~~~~~t-~~~gl~a~G~~~~~  276 (336)
T d2bs2a2         239 IALETGIAQLGNMGGIRTDYRGEA-KLKGLFSAGEAACW  276 (336)
T ss_dssp             HHHTTSSSCEECCCEEECCTTSBC-SSBTEEECGGGEEC
T ss_pred             hhhhhhhhhhccccceeechhhcc-cCCcceeccccccc
Confidence                 1 12345678899999988 79999999998653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.33  E-value=1.6e-12  Score=104.68  Aligned_cols=54  Identities=22%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccCCCc----eeEEcCCCc--EEeccEEEEccCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS----DTYLTSTGD--TINADCHFLCTGK  233 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~----~~v~~~~g~--~~~~d~vv~a~G~  233 (290)
                      .+...+.+.+++.|++++.++.++++..++++    +.+...+++  .+.++.||+|||-
T Consensus       149 ~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         149 EIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             hhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccc
Confidence            57788888999999999999999888665543    233344553  5789999999984

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.30  E-value=2.6e-12  Score=101.96  Aligned_cols=106  Identities=22%  Similarity=0.262  Sum_probs=69.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh-----hc-----CCc----------cccc--ccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-----MV-----EPS----------FGKR--SVI   68 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~-----~~-----~~~----------~~~~--~~~   68 (290)
                      ...||+|||||++||++|++|++ |.+++|||+++.+|+.|.....     ..     ...          ....  ...
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~   85 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   85 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccc
Confidence            36999999999999999999976 9999999999999988853211     00     000          0000  000


Q ss_pred             ccccccc---------cceEEeeeeeeeec--c----eEEecCceEEeccEEEEccCCC--CCCCC
Q 022896           69 NHTDYLV---------NGRIVASPAINITE--N----EVLTAEGRRVVYDYLVIATGHK--DPVPK  117 (290)
Q Consensus        69 ~~~~~~~---------~~~~~~~~v~~~~~--~----~v~~~~~~~~~~~~vi~a~G~~--~~~p~  117 (290)
                      ...+|++         ..-.++..|+.+..  .    .|.+.++.++++|.+|+|+|..  |..|.
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~  151 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGA  151 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHH
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCc
Confidence            0111111         11234567777752  2    5788888899999999999964  55543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.30  E-value=3.2e-12  Score=94.38  Aligned_cols=105  Identities=27%  Similarity=0.321  Sum_probs=68.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhhhhhhcCCccccccccccccc-cccceEEeeeeeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY-LVNGRIVASPAINIT   88 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~   88 (290)
                      .++|+|||||++|+.+|.+|++ +  .+|+|||+++.+...+.....................+ ...+.+..+.+..++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   81 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGID   81 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeee
Confidence            3689999999999999999975 4  68999999987654433222222221111111111111 123455566666665


Q ss_pred             cc--eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        89 ~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      ..  .+.+.++..+.||++++|+|..|..+.
T Consensus        82 ~~~~~~~~~~~~~i~~D~li~atG~~~~~~~  112 (186)
T d1fcda1          82 PDKKLVKTAGGAEFGYDRCVVAPGIELIYDK  112 (186)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECCTT
T ss_pred             eccceeecccceeeccceEEEEeccccchhh
Confidence            54  577788899999999999999876543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.30  E-value=2e-12  Score=104.88  Aligned_cols=41  Identities=27%  Similarity=0.467  Sum_probs=35.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWA   52 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~   52 (290)
                      ..++|+|||||+|||+||.+|.+ +  ++|+||||++.+|+.|.
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~   46 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN   46 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCccc
Confidence            36899999999999999999964 4  69999999999887764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=4.8e-12  Score=95.08  Aligned_cols=101  Identities=19%  Similarity=0.150  Sum_probs=64.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC-Ccccchhh----------hhhhcCCccc--c---ccccccccccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE-YFEITWAS----------LRAMVEPSFG--K---RSVINHTDYLV   75 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~-~~~~~~~~----------~~~~~~~~~~--~---~~~~~~~~~~~   75 (290)
                      .|||||||||+||++||.++++ |.+++||+++- ..+.....          +..-....-+  +   ....+......
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~   81 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR   81 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence            5999999999999999999987 99999999863 11111110          0000000000  0   00111111223


Q ss_pred             cceEEeeeeeeeecc-----eEEecCceEEeccEEEEccCCCC
Q 022896           76 NGRIVASPAINITEN-----EVLTAEGRRVVYDYLVIATGHKD  113 (290)
Q Consensus        76 ~~~~~~~~v~~~~~~-----~v~~~~~~~~~~~~vi~a~G~~~  113 (290)
                      +..++.+.|..+-.+     .|.+.+|.++.++.|||+||...
T Consensus        82 nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          82 PLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             TEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             CHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence            557778888776432     37788999999999999999873

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.19  E-value=5.3e-11  Score=95.17  Aligned_cols=39  Identities=33%  Similarity=0.306  Sum_probs=35.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      ..+||+|||||++||++|++|++ |.+|+||||.+..++.
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~   54 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN   54 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            46999999999999999999986 9999999999877654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.16  E-value=4.2e-11  Score=81.45  Aligned_cols=89  Identities=19%  Similarity=0.301  Sum_probs=64.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceE-Eeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRI-VASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~v~~~   87 (290)
                      ...+++|||||+.|+-+|..|++ |.+|+++|+.+.+....          +..+......+.+  .++++ .+..++.+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~----------~~~~~~~~~~~~l~~~GV~i~~~~~v~~~   98 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA----------APATLADFVARYHAAQGVDLRFERSVTGS   98 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------SCHHHHHHHHHHHHTTTCEEEESCCEEEE
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc----------CCHHHHHHHHHHHHHCCcEEEeCCEEEEE
Confidence            45899999999999999999975 99999999988653110          1111111111111  13454 35667777


Q ss_pred             ecceEEecCceEEeccEEEEccC
Q 022896           88 TENEVLTAEGRRVVYDYLVIATG  110 (290)
Q Consensus        88 ~~~~v~~~~~~~~~~~~vi~a~G  110 (290)
                      ....+.+++|.++.+|.+++|+|
T Consensus        99 ~~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          99 VDGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             ETTEEEETTSCEEECSEEEECSC
T ss_pred             eCCEEEECCCCEEECCEEEEeeC
Confidence            77789999999999999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.2e-10  Score=79.68  Aligned_cols=106  Identities=12%  Similarity=0.147  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       123 ~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      ++.+......+..+++|+|+|+|.+|++.|..|..  ...+|++++|++.+.  ..+.+.+.+.+..+..++.++.++.+
T Consensus        14 V~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v   89 (126)
T d1trba2          14 VSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTL   89 (126)
T ss_dssp             EESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEE
T ss_pred             EEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhh--cCCcEEEEeeccccc--chhHHHHHHHHhhcccceeEecceEE
Confidence            33344455566789999999999999999999996  488999999998762  35567777888888899999999999


Q ss_pred             eecccCCCce-eEEcCC---C---cEEeccEEEEccC
Q 022896          203 NLDSVSEGSD-TYLTST---G---DTINADCHFLCTG  232 (290)
Q Consensus       203 ~~i~~~~~~~-~v~~~~---g---~~~~~d~vv~a~G  232 (290)
                      .++..++..+ .++..+   +   +++++|.+++++|
T Consensus        90 ~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          90 EEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            9998876642 233322   2   3689999999987

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.15  E-value=3.5e-11  Score=86.20  Aligned_cols=132  Identities=10%  Similarity=-0.071  Sum_probs=92.1

Q ss_pred             ccCCCCC----CCCchHH--HHHHHHHHHHHH-hcCCeEEEE--cCchhHHHHHHHHhhhCCCCeEEEEecCccccccCC
Q 022896          108 ATGHKDP----VPKTRTE--RLNQYQAENQKI-KSARSILIV--GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG  178 (290)
Q Consensus       108 a~G~~~~----~p~~~~~--~~~~~~~~~~~~-~~~~~v~ii--G~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~  178 (290)
                      |||+.|.    +|+....  .+.+....+... ..+++++|+  |+++.|+++|..|+.  .+.+|+++++.+.+++.++
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~--~G~~Vtlv~~~~~~~~~~~   81 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVHLANYMHF   81 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSCTTTHHHH
T ss_pred             CCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHH--cCCeEEEEecCCccccccc
Confidence            7898853    5553221  222333343333 355666666  999999999999997  5999999999998887777


Q ss_pred             hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896          179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  245 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~  245 (290)
                      +.....+.+.++++|+++++++.+.+++.+  ...+.  +......+.+..++|..|+.......++
T Consensus        82 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~l~--~~~~~~~~~v~~~~g~~~~~~~~~~~~l  144 (156)
T d1djqa2          82 TLEYPNMMRRLHELHVEELGDHFCSRIEPG--RMEIY--NIWGDGSKRTYRGPGVSPRDANTSHRWI  144 (156)
T ss_dssp             TTCHHHHHHHHHHTTCEEEETEEEEEEETT--EEEEE--ETTCSCSCCCCCCTTSCSSCCCCCCEEE
T ss_pred             hhHHHHHHHHHhhccceEEeccEEEEecCc--ceEEE--eeeccccceeeeeeEEEecccCCccCcE
Confidence            788889999999999999999999877643  33332  2222345666666666666665555544

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=5.8e-11  Score=80.28  Aligned_cols=90  Identities=19%  Similarity=0.238  Sum_probs=60.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeec
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITE   89 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~   89 (290)
                      ...+++|||||++|+.+|..|++ |.+|+|+|+.+.+....       .+.........+.+  .++++. ...++.+..
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~-------d~~~~~~~~~~l~~--~GV~~~~~~~v~~i~~   90 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-------DPMISETLVEVMNA--EGPQLHTNAIPKAVVK   90 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS-------CHHHHHHHHHHHHH--HSCEEECSCCEEEEEE
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhc-------chhhHHHHHHHHHH--CCCEEEeCCEEEEEEE
Confidence            35789999999999999999986 99999999988654211       11111111111111  134443 445555543


Q ss_pred             c-----eEEecCceEEeccEEEEccC
Q 022896           90 N-----EVLTAEGRRVVYDYLVIATG  110 (290)
Q Consensus        90 ~-----~v~~~~~~~~~~~~vi~a~G  110 (290)
                      .     .+.+++|..+.+|.+++|+|
T Consensus        91 ~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          91 NTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             cCCcEEEEEECCCCEEEcCEEEEecC
Confidence            2     47788899999999999998

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=1.7e-13  Score=105.82  Aligned_cols=40  Identities=15%  Similarity=0.072  Sum_probs=35.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-------CcEEEEcCCCCcccchh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-------ADVTLIDPKEYFEITWA   52 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-------~~v~vie~~~~~~~~~~   52 (290)
                      .++|+|||||||||+||++|.+ |       ++|+|||+.+.+|+.|.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            4799999999999999999965 5       58999999999998664

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.3e-11  Score=89.36  Aligned_cols=103  Identities=17%  Similarity=0.116  Sum_probs=61.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccc-----cccccccccc--ccceEEeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGK-----RSVINHTDYL--VNGRIVASP   83 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~   83 (290)
                      +++||+||||||+||+||.+|++ |++|+|||+....+.............++.     +.........  .......+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecce
Confidence            35899999999999999999987 999999998775442211100000001111     1111111111  123455566


Q ss_pred             eeeeecc---eEEecCceEEeccEEEEccCCCCC
Q 022896           84 AINITEN---EVLTAEGRRVVYDYLVIATGHKDP  114 (290)
Q Consensus        84 v~~~~~~---~v~~~~~~~~~~~~vi~a~G~~~~  114 (290)
                      |+.++..   .........+..+.+++++|..+.
T Consensus        84 V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          84 INKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             EEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             eEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence            7776654   133345567899999999998753

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=8e-11  Score=93.97  Aligned_cols=89  Identities=20%  Similarity=0.165  Sum_probs=60.5

Q ss_pred             HHHHHHhCCcEEEeCceEeecccCCC-------c-eeE---EcCCCc--EEeccEEEEccCCCCCc-------h------
Q 022896          185 TRDWLISKKVDVKLGERVNLDSVSEG-------S-DTY---LTSTGD--TINADCHFLCTGKPVGS-------D------  238 (290)
Q Consensus       185 ~~~~~~~~gi~~~~~~~v~~i~~~~~-------~-~~v---~~~~g~--~~~~d~vv~a~G~~~~~-------~------  238 (290)
                      +.+.++..+++++.++.+.++..+++       . ..+   ...+++  .+.++.||+|+|-....       +      
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG  223 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG  223 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence            45566778999999999887765543       1 222   234454  57899999999843211       1      


Q ss_pred             --hhcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896          239 --WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  276 (290)
Q Consensus       239 --~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~  276 (290)
                        +....  +..+..-+++.++++.++ +.|++|++|+++
T Consensus       224 ~~mA~~a--Ga~l~~m~~iq~~~~g~t-~~~g~~a~G~~~  260 (305)
T d1chua2         224 IAMAWRA--GCRVANCGGVMVDDHGRT-DVEGLYAIGEVS  260 (305)
T ss_dssp             HHHHHHT--TCCEECSCEEECCTTCBC-SSBTEEECGGGE
T ss_pred             Eeecccc--ceeeEecceeEECCcccC-CCCCceecccEE
Confidence              11122  334567788999999998 799999999874

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.12  E-value=1.2e-10  Score=84.42  Aligned_cols=99  Identities=28%  Similarity=0.342  Sum_probs=65.1

Q ss_pred             cEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccchhhhhhhcCCcccccccc-ccccccc--cceEE-eeeeeeeecc
Q 022896           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI-NHTDYLV--NGRIV-ASPAINITEN   90 (290)
Q Consensus        15 dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~v~~~~~~   90 (290)
                      +|+|||||++|+.+|..|+++.+|+|+++++...+....+..........+... ...+++.  ..++. ...++.++..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~   81 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRG   81 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEETT
T ss_pred             eEEEECCcHHHHHHHHHHHcCCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccccc
Confidence            799999999999999999988999999998865543333322222222111111 1111211  23333 4567777655


Q ss_pred             -eEEecCceEEeccEEEEccCCCC
Q 022896           91 -EVLTAEGRRVVYDYLVIATGHKD  113 (290)
Q Consensus        91 -~v~~~~~~~~~~~~vi~a~G~~~  113 (290)
                       .+...++.++.||.+++|+|..|
T Consensus        82 ~~~~~~~~~~i~~D~li~a~G~~~  105 (167)
T d1xhca1          82 RKVVITEKGEVPYDTLVLATGAPN  105 (167)
T ss_dssp             TTEEEESSCEEECSEEEECCCEEC
T ss_pred             cccccccccccccceeEEEEEecC
Confidence             46667778899999999999865

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2e-10  Score=78.58  Aligned_cols=105  Identities=25%  Similarity=0.293  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEe
Q 022896          120 TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKL  198 (290)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~  198 (290)
                      ...++.+......+..+++|+|+|+|.+|++.|..|.+  ...+|++++|++.+      ...+.+.+.+.+ .+|++++
T Consensus        14 gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~--~a~~V~li~r~~~~------~~~~~~~~~~~~~~~I~v~~   85 (126)
T d1fl2a2          14 TKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPEM------KADQVLQDKLRSLKNVDIIL   85 (126)
T ss_dssp             TTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSSSC------CSCHHHHHHHHTCTTEEEES
T ss_pred             CCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhc--cCCceEEEeccccc------ccccccccccccccceeEEc
Confidence            34444455556677899999999999999999999997  48899999999876      233444455555 5799999


Q ss_pred             CceEeecccCCCc-eeEEc---CCCc--EEeccEEEEccC
Q 022896          199 GERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTG  232 (290)
Q Consensus       199 ~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G  232 (290)
                      ++++.++..+++. ..+..   .+|+  ++++|.++++.|
T Consensus        86 ~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          86 NAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             CcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            9999998887554 23332   3443  689999999988

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.4e-10  Score=87.49  Aligned_cols=105  Identities=17%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhc-CCcc----------------------ccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMV-EPSF----------------------GKR   65 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~-~~~~----------------------~~~   65 (290)
                      .+++++|||||++|+.+|..|++   ..+|++|+++..+.+.-..+.... ....                      ...
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   82 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence            36899999999999999999974   467999998876644321111000 0000                      000


Q ss_pred             cccc--ccccc--ccceEE-eeeeeeeecc--eEEecCceEEeccEEEEccCCCCCCC
Q 022896           66 SVIN--HTDYL--VNGRIV-ASPAINITEN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (290)
Q Consensus        66 ~~~~--~~~~~--~~~~~~-~~~v~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p  116 (290)
                      ....  ...++  .++++. ...|+.++.+  .|.+++|.++.||.+|+|+|..|..+
T Consensus        83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~  140 (213)
T d1m6ia1          83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNV  140 (213)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECC
T ss_pred             hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchh
Confidence            0000  00011  134443 4578888765  69999999999999999999875433

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2.2e-10  Score=91.51  Aligned_cols=93  Identities=18%  Similarity=0.127  Sum_probs=59.8

Q ss_pred             HHHHHHHhCCcEEEeCceEeecccCCCce-eE---EcCCCc--EEeccEEEEccCCCC-------Cchhhcccc------
Q 022896          184 KTRDWLISKKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKPV-------GSDWLKDTI------  244 (290)
Q Consensus       184 ~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~~-------~~~~l~~~~------  244 (290)
                      .+.+..+..+|+++.++.++++..+++.+ .+   ...+|+  .+.++.||+|||--.       |++.....+      
T Consensus       140 ~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~  219 (311)
T d1kf6a2         140 LFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALS  219 (311)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHT
T ss_pred             HHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHh
Confidence            34444555689999999999887777652 22   356775  457999999998321       111111111      


Q ss_pred             cccccCCCCcEEecCCccccCCCCeEEeccccC
Q 022896          245 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  277 (290)
Q Consensus       245 ~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~  277 (290)
                      .+.++.+-.++.++++..+ ..+++|+.+++..
T Consensus       220 aGa~l~dme~iq~~p~~~~-~~~~~~~~~~~~~  251 (311)
T d1kf6a2         220 HGVPLRDMGGIETDQNCET-RIKGLFAVGECSS  251 (311)
T ss_dssp             TTCCEESCCEEECCTTSBC-SSBTEEECGGGEE
T ss_pred             cccceeecccccccccchh-cccCCCcCcceee
Confidence            1223334466777777776 6899999999764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.02  E-value=6.8e-11  Score=90.40  Aligned_cols=38  Identities=24%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccch
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITW   51 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~   51 (290)
                      .+|+|||||||||+||.+|.+   +++|+|||+.+.+|+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~   42 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV   42 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcee
Confidence            589999999999999999953   78999999999888644

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.02  E-value=5.4e-10  Score=82.09  Aligned_cols=106  Identities=17%  Similarity=0.124  Sum_probs=62.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEc--CCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLID--PKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~   87 (290)
                      ++.+|+|||||++|+.+|..|++ |.++++++  ++....+....+...+......+..........++++. ...+..+
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   81 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   81 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccc
Confidence            35679999999999999999976 76655544  44332222111111110000001111001111234443 4567777


Q ss_pred             ecc--eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        88 ~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      +..  .+.+.++.++.||.+++|+|..|....
T Consensus        82 ~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~  113 (183)
T d1d7ya1          82 DPQAHTVALSDGRTLPYGTLVLATGAAPRAVL  113 (183)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCEEECCEE
T ss_pred             ccccceeEecCCcEeeeeeEEEEEEEEccccc
Confidence            665  688889999999999999999876543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.02  E-value=3e-10  Score=84.15  Aligned_cols=101  Identities=17%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh---hhhhcC--Cccc-----ccccccccccc--ccce
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS---LRAMVE--PSFG-----KRSVINHTDYL--VNGR   78 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~---~~~~~~--~~~~-----~~~~~~~~~~~--~~~~   78 (290)
                      .++||+||||||+|++||.+|++ |++++|+|+..........   ......  ..++     .+....+.+..  -+.+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~   83 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   83 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence            36999999999999999999986 9999999987653321111   101110  0110     11111111111  1345


Q ss_pred             EEeeeeeeeecc---eEEecCceEEeccEEEEccCCC
Q 022896           79 IVASPAINITEN---EVLTAEGRRVVYDYLVIATGHK  112 (290)
Q Consensus        79 ~~~~~v~~~~~~---~v~~~~~~~~~~~~vi~a~G~~  112 (290)
                      +..+.|..++..   .....+...+.++.+++++|..
T Consensus        84 i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          84 IFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             EECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             eeeeeEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence            566667776644   2233455678899999999965

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.1e-10  Score=94.18  Aligned_cols=38  Identities=24%  Similarity=0.177  Sum_probs=34.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~   50 (290)
                      ++||+|||+|+|||+||.++++ |.+|+|+||.+..++.
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~   45 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCc
Confidence            6999999999999999999975 9999999998876644

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.00  E-value=3.1e-11  Score=89.92  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCCcccchh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEYFEITWA   52 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~~~~~~~   52 (290)
                      .++|+||||||+||+||++|++ |+ +|+|||+++..++.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~   45 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST   45 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhh
Confidence            5899999999999999999986 88 5999999998886654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.00  E-value=4.6e-10  Score=77.61  Aligned_cols=89  Identities=25%  Similarity=0.304  Sum_probs=60.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~   87 (290)
                      ...+++|||||++|+.+|..|++ |.+|+++|+.+.+....      ..+..    .....+.+  .+++++ ...++.+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~------~~~~~----~~~~~~~~~~~GV~i~~~~~v~~i  103 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV------TAPPV----SAFYEHLHREAGVDIRTGTQVCGF  103 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT------SCHHH----HHHHHHHHHHHTCEEECSCCEEEE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc------cchhh----hhhhhhcccccccEEEeCCeEEEE
Confidence            45899999999999999999975 99999999988753211      01111    00111111  134444 4455666


Q ss_pred             ecc-------eEEecCceEEeccEEEEccC
Q 022896           88 TEN-------EVLTAEGRRVVYDYLVIATG  110 (290)
Q Consensus        88 ~~~-------~v~~~~~~~~~~~~vi~a~G  110 (290)
                      ...       .+.+++|.++.+|.+++|+|
T Consensus       104 ~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         104 EMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            432       37788999999999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=3.4e-10  Score=81.48  Aligned_cols=119  Identities=16%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             CCCCCchHHHHHHHHHHH-HHHhcCCeEEEEcCchhHHHHHHHHhhhCC-------------------------------
Q 022896          113 DPVPKTRTERLNQYQAEN-QKIKSARSILIVGGGPTGVELAGEIAVDFP-------------------------------  160 (290)
Q Consensus       113 ~~~p~~~~~~~~~~~~~~-~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~-------------------------------  160 (290)
                      |.+|+.+...+.++...+ .....+++++|||+|++|+|+|..+.....                               
T Consensus         5 p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (162)
T d1ps9a2           5 PPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQ   84 (162)
T ss_dssp             CCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCC
T ss_pred             CCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccce
Confidence            456664444443333333 233568999999999999999998885310                               


Q ss_pred             ----CCeEEEEecC-ccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC-cEEeccEEEEccCC
Q 022896          161 ----EKKVTLVHKG-SRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGK  233 (290)
Q Consensus       161 ----~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~  233 (290)
                          ..+++.+... ......+...........++..|++++.++.+..+.  ++++.+...+. .+++||.||+|+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2          85 IPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             CCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             eccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCCC
Confidence                1123333332 233334555666778888999999999999997664  45544443322 26899999999994

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.99  E-value=3.1e-10  Score=88.44  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+|+||||||+||++|..|++ |++|+||||++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            35889999999999999999976 999999999764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.7e-10  Score=91.57  Aligned_cols=41  Identities=17%  Similarity=0.295  Sum_probs=37.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~   53 (290)
                      ++|+||||||++||+||++|++ |.+|+|||+++.+|+....
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence            5899999999999999999986 9999999999999987543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.97  E-value=6.1e-10  Score=75.06  Aligned_cols=88  Identities=18%  Similarity=0.281  Sum_probs=57.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEE-eeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV-ASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v~~~   87 (290)
                      ...+++|||||+.|+.+|..|++ |.+|+|+|+.+.+....       .++.    .....+.+.  +++++ ...++.+
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~-------d~~~----~~~l~~~l~~~gV~i~~~~~V~~i   88 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY-------DSEL----TAPVAESLKKLGIALHLGHSVEGY   88 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS-------CHHH----HHHHHHHHHHHTCEEETTCEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccc-------cchh----HHHHHHHHHhhcceEEcCcEEEEE
Confidence            35889999999999999999986 99999999988753111       1111    111111111  34443 3457777


Q ss_pred             ecceEE--ec--CceEEeccEEEEccC
Q 022896           88 TENEVL--TA--EGRRVVYDYLVIATG  110 (290)
Q Consensus        88 ~~~~v~--~~--~~~~~~~~~vi~a~G  110 (290)
                      +.....  ..  ++.++.+|.+++|+|
T Consensus        89 ~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          89 ENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             cCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            665322  22  235799999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.93  E-value=8.5e-10  Score=75.13  Aligned_cols=88  Identities=18%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||++|+.+|..|++ |.+|+|+|+++.+..        ..+.........+.+  .+++++ +..+..++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--------~d~~~~~~~~~~l~~--~GV~~~~~~~v~~~~~~  101 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--------LDEELSNMIKDMLEE--TGVKFFLNSELLEANEE  101 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--------CCHHHHHHHHHHHHH--TTEEEECSCCEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--------CCHHHHHHHHHHHHH--CCcEEEeCCEEEEEeCC
Confidence            3789999999999999999976 999999999886531        111111111111111  144554 4566777766


Q ss_pred             eEEecCceEEeccEEEEccCC
Q 022896           91 EVLTAEGRRVVYDYLVIATGH  111 (290)
Q Consensus        91 ~v~~~~~~~~~~~~vi~a~G~  111 (290)
                      .+ +.++..+.+|.+++|+|.
T Consensus       102 ~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         102 GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             EE-EETTEEEECSCEEEECCE
T ss_pred             EE-EeCCCEEECCEEEEEEEe
Confidence            54 446778999999999994

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.92  E-value=1.3e-09  Score=81.11  Aligned_cols=101  Identities=17%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCcccc--cccccccccc--ccceE-Eeeeee
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGK--RSVINHTDYL--VNGRI-VASPAI   85 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~-~~~~v~   85 (290)
                      ++|+|||||++|+.+|..|++   +.+|+++|+++...+....+...+......  .......+.+  .++++ ....|.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            479999999999999999975   678999999887654433333333222211  1111111111  23444 567888


Q ss_pred             eeecc--eEEe---cCc--eEEeccEEEEccCCCCC
Q 022896           86 NITEN--EVLT---AEG--RRVVYDYLVIATGHKDP  114 (290)
Q Consensus        86 ~~~~~--~v~~---~~~--~~~~~~~vi~a~G~~~~  114 (290)
                      .++++  .+..   .++  ..+.||.+++|+|..+.
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~  116 (198)
T d1nhpa1          81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF  116 (198)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             eEeeccccceeeecccccccccccceeeEeecceee
Confidence            88865  3332   233  35789999999998754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.91  E-value=2.9e-10  Score=93.26  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=34.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-------cCCcEEEEcCCCCcccc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-------FSADVTLIDPKEYFEIT   50 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-------~g~~v~vie~~~~~~~~   50 (290)
                      .+|||||||||||++||++|+       +|++|+||||+...+.+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            599999999999999999996       49999999999987644

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.7e-10  Score=92.15  Aligned_cols=41  Identities=34%  Similarity=0.523  Sum_probs=37.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~   51 (290)
                      ..+.||+|||||++||+||++|++ |++|+|+|+++.+|+..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~   44 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV   44 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccE
Confidence            456889999999999999999976 99999999999988754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.6e-09  Score=77.36  Aligned_cols=88  Identities=23%  Similarity=0.251  Sum_probs=70.0

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-----------ChhHHHHHHHHHHhCCcEEEeCceE
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTRDWLISKKVDVKLGERV  202 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~gi~~~~~~~v  202 (290)
                      ..+++|+|||+|++|+++|..|+.  .+.+|+++++.+.+...+           ..++.+.+.+.++..|+++++++.|
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V  118 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV  118 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEE
Confidence            357999999999999999999986  489999999988764321           1256677888889999999999887


Q ss_pred             eecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896          203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  237 (290)
Q Consensus       203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  237 (290)
                      +.             + ....+|.||+|+|..|..
T Consensus       119 t~-------------~-~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         119 TA-------------D-QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             CS-------------S-SSCCSSEEEECCCEECCT
T ss_pred             cc-------------c-ccccceeEEEeecCCCcc
Confidence            32             1 135789999999987754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.88  E-value=8.2e-10  Score=85.81  Aligned_cols=40  Identities=30%  Similarity=0.278  Sum_probs=34.4

Q ss_pred             ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      |+...+||+|||||++||++|++|++ |++|+||||+...+
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~   42 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPED   42 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            34457899999999999999999975 99999999987543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.88  E-value=2.6e-09  Score=72.10  Aligned_cols=88  Identities=20%  Similarity=0.286  Sum_probs=59.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc---c-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEE-eeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV-ASPA   84 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~---~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v   84 (290)
                      ...+++|||||++|+-+|..|.   + |.+|+++++.+.+...+       .+..    ...+.+.++  +++++ +..+
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~-------d~~~----~~~~~~~l~~~GI~v~~~~~v   85 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGF-------DSEL----RKQLTEQLRANGINVRTHENP   85 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTS-------CHHH----HHHHHHHHHHTTEEEEETCCE
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccc-------cchh----hHHHHHHHhhCcEEEEcCCEE
Confidence            3589999999999999997653   3 88999999987653111       1111    111111121  34443 5566


Q ss_pred             eeeecc-----eEEecCceEEeccEEEEccC
Q 022896           85 INITEN-----EVLTAEGRRVVYDYLVIATG  110 (290)
Q Consensus        85 ~~~~~~-----~v~~~~~~~~~~~~vi~a~G  110 (290)
                      ..+...     .+.+++|..+.+|.+++|+|
T Consensus        86 ~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          86 AKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            777543     47889999999999999998

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.88  E-value=2.7e-09  Score=72.15  Aligned_cols=89  Identities=19%  Similarity=0.289  Sum_probs=57.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEE-eeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV-ASPAIN   86 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v~~   86 (290)
                      ....+++|||||+.|+-+|..|++ |.+|+++++.+.+....       .+    +....+.++++  ++++. ...++.
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~-------d~----ei~~~l~~~l~~~Gv~i~~~~~v~~   88 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV-------DE----QVAKEAQKILTKQGLKILLGARVTG   88 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS-------CH----HHHHHHHHHHHHTTEEEEETCEEEE
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcc-------cc----hhHHHHHHHHHhcCceeecCcEEEE
Confidence            345889999999999999999986 99999999988753211       11    11111222221  23333 445666


Q ss_pred             eecc----eEEecCc---eEEeccEEEEccC
Q 022896           87 ITEN----EVLTAEG---RRVVYDYLVIATG  110 (290)
Q Consensus        87 ~~~~----~v~~~~~---~~~~~~~vi~a~G  110 (290)
                      +..+    .+...++   .++.+|.+++|+|
T Consensus        89 i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          89 TEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            6543    3443332   5789999999998

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.87  E-value=5.9e-10  Score=89.31  Aligned_cols=38  Identities=34%  Similarity=0.444  Sum_probs=35.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~   51 (290)
                      ++|+|||||++||+||++|++ |++|+|||+++.+|+..
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~   40 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   40 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCce
Confidence            689999999999999999986 99999999999988754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.87  E-value=5.4e-09  Score=82.55  Aligned_cols=97  Identities=16%  Similarity=0.181  Sum_probs=77.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------C----------------C
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------I----------------G  178 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------~----------------~  178 (290)
                      .-+|+|||+|.+|+-+|..|.+  .+.+++++++.+.+...                     .                .
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~--~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~   84 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQ   84 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBH
T ss_pred             CCCEEEECccHHHHHHHHHHHh--CCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCcc
Confidence            3579999999999999999987  48899999987653210                     0                1


Q ss_pred             hhHHHHHHHHHHhCCc--EEEeCceEeecccCC--CceeEEcCCCcEEeccEEEEccCCC
Q 022896          179 PKAGDKTRDWLISKKV--DVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       179 ~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      +++...+.+.+++.++  .++++++|++++.++  +...+.+.+++++.+|.+|+|+|..
T Consensus        85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          85 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             chHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            2566678888888898  599999999998544  3488899999999999999999974

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.86  E-value=8.5e-10  Score=88.08  Aligned_cols=41  Identities=20%  Similarity=0.472  Sum_probs=37.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~   53 (290)
                      .++|+|||||++||+||++|++ |++|+|||+++.+|+....
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t   43 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   43 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeE
Confidence            5789999999999999999986 9999999999999987643

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.85  E-value=6.8e-09  Score=70.90  Aligned_cols=103  Identities=17%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHH--HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHH-HhCCcEEE
Q 022896          121 ERLNQYQAENQ--KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVK  197 (290)
Q Consensus       121 ~~~~~~~~~~~--~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~~~  197 (290)
                      +.++.+..+..  .+.++++|+|+|+|.++++.|.+|+.  ...+|++++|++.+.      ..+.+.+.+ ...+|+++
T Consensus        17 kGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~r------a~~~~~~~l~~~~nI~v~   88 (130)
T d1vdca2          17 RGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDAFR------ASKIMQQRALSNPKIDVI   88 (130)
T ss_dssp             TTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSSSCC------SCHHHHHHHHTCTTEEEE
T ss_pred             CcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhC--CCCcEEEEEeccccc------cchhhhhccccCCceEEE
Confidence            44444555543  37789999999999999999999996  589999999998763      223333444 44579999


Q ss_pred             eCceEeecccCCCc-----eeEE-cCCC--cEEeccEEEEcc
Q 022896          198 LGERVNLDSVSEGS-----DTYL-TSTG--DTINADCHFLCT  231 (290)
Q Consensus       198 ~~~~v~~i~~~~~~-----~~v~-~~~g--~~~~~d~vv~a~  231 (290)
                      +++++.++..++..     +.+. ..+|  +++++|.+++++
T Consensus        89 ~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          89 WNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             CSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             eccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            99999988876542     2222 2344  478999999874

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.85  E-value=6.7e-10  Score=87.33  Aligned_cols=44  Identities=18%  Similarity=0.091  Sum_probs=38.1

Q ss_pred             HhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896          190 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  233 (290)
Q Consensus       190 ~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  233 (290)
                      +..+.++..++.+..++..++.+.+.+.+|+.+.+|.++++.+.
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~  264 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  264 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             hhcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCH
Confidence            44577889999999999988889999999999999999998753

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.85  E-value=3.8e-10  Score=88.68  Aligned_cols=41  Identities=24%  Similarity=0.211  Sum_probs=36.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-c-CCcEEEEcCCCCcccchh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~~~~~~   52 (290)
                      .++||+||||||+||+||++|+ + |++|+|||+++.+|+.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCcee
Confidence            5799999999999999999984 4 999999999988876543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=3e-09  Score=78.04  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (290)
                      |||+||||||+|++||.++++ |.+|+|||++
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            899999999999999999987 9999999985

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.85  E-value=7.7e-09  Score=83.31  Aligned_cols=100  Identities=20%  Similarity=0.173  Sum_probs=74.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------  176 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------  176 (290)
                      .-|+|+|||+|.+|+.+|..|.......+|+++++++.+...                                      
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   82 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   82 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence            458999999999999999988764345699999998764200                                      


Q ss_pred             --------------------------C--ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC---c---EE
Q 022896          177 --------------------------I--GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---D---TI  222 (290)
Q Consensus       177 --------------------------~--~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g---~---~~  222 (290)
                                                +  ...+.+.+....+..+..+++++.|++++.+++++.|++.++   +   ..
T Consensus        83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~  162 (335)
T d2gv8a1          83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKD  162 (335)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEE
T ss_pred             chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEE
Confidence                                      0  113455566666667888999999999999888866654332   2   45


Q ss_pred             eccEEEEccCCC
Q 022896          223 NADCHFLCTGKP  234 (290)
Q Consensus       223 ~~d~vv~a~G~~  234 (290)
                      .+|.||+|+|..
T Consensus       163 ~~d~VI~AtG~~  174 (335)
T d2gv8a1         163 IFDAVSICNGHY  174 (335)
T ss_dssp             EESEEEECCCSS
T ss_pred             EeeEEEEccccc
Confidence            699999999975

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=7.5e-09  Score=76.59  Aligned_cols=138  Identities=16%  Similarity=0.208  Sum_probs=89.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNL  204 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~  204 (290)
                      .++||+|||+|++|+++|..|..+  +. +|+++++.+.+...         ................+..+.....+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE   80 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST
T ss_pred             CCCEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEecc
Confidence            479999999999999999999974  65 69999998876431         2234445555566667788887766522


Q ss_pred             cccCCCceeEEcCCCcEEeccEEEEccCCCCCch--hhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCcccc
Q 022896          205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS  281 (290)
Q Consensus       205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~--~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~~  281 (290)
                      ...       ...+.....++.+++++|......  ..............+....+.. +++ +.+.+|++||+++.++.
T Consensus        81 ~~~-------~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~g~vigg~~~  152 (196)
T d1gtea4          81 NEI-------TLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMANT  152 (196)
T ss_dssp             TSB-------CHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCCC
T ss_pred             cee-------eeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCC-CcccccccccccCCcch
Confidence            111       111222456889999999654322  2222212222344555555554 555 79999999999987664


Q ss_pred             c
Q 022896          282 A  282 (290)
Q Consensus       282 ~  282 (290)
                      +
T Consensus       153 a  153 (196)
T d1gtea4         153 T  153 (196)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.2e-09  Score=73.17  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-----cCCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v   84 (290)
                      ..+++|||||++|+-+|..|+     .|.+|+++++++.+....          ++.+......+.+  .++++. +..+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~----------~~~~~~~~~~~~l~~~GV~~~~~~~V  106 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI----------LPEYLSNWTMEKVRREGVKVMPNAIV  106 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT----------SCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc----------CCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence            578999999999999998884     289999999988643110          1111111111111  134554 4466


Q ss_pred             eeeecc----eEEecCceEEeccEEEEccC
Q 022896           85 INITEN----EVLTAEGRRVVYDYLVIATG  110 (290)
Q Consensus        85 ~~~~~~----~v~~~~~~~~~~~~vi~a~G  110 (290)
                      ..++.+    .+.+++|..+.+|.+++|+|
T Consensus       107 ~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             EEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             EEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            666554    58889999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.82  E-value=4.7e-09  Score=71.41  Aligned_cols=88  Identities=22%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceE-Eeeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRI-VASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~v~~~   87 (290)
                      ...+++|||||+.|+.+|..|++ |.+|+++|+.+.+....      ..+..    .....+++.  ++++ ....+..+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~------~d~~~----~~~~~~~l~~~gv~~~~~~~v~~i   98 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY------LDKEF----TDVLTEEMEANNITIATGETVERY   98 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT------CCHHH----HHHHHHHHHTTTEEEEESCCEEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc------cchhh----HHHHHHHhhcCCeEEEeCceEEEE
Confidence            35799999999999999999976 99999999987642111      11111    111111111  3343 34566666


Q ss_pred             ecc---eEEecCceEEeccEEEEcc
Q 022896           88 TEN---EVLTAEGRRVVYDYLVIAT  109 (290)
Q Consensus        88 ~~~---~v~~~~~~~~~~~~vi~a~  109 (290)
                      ..+   .....++.++.+|.+++|.
T Consensus        99 ~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          99 EGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             ECSSBCCEEEESSCEEECSEEEECS
T ss_pred             EcCCCEEEEEeCCCEEECCEEEEEC
Confidence            544   3456788899999999873

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.77  E-value=1.3e-08  Score=68.45  Aligned_cols=88  Identities=14%  Similarity=0.192  Sum_probs=57.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN   90 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   90 (290)
                      ..+++|||||+.|+.+|..|++ |.+|+|+++.+.+...+       .+.........+.+  .++.+. ...++.+...
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~-------d~~~~~~~~~~l~~--~gV~i~~~~~v~~i~~~   92 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF-------DESVINVLENDMKK--NNINIVTFADVVEIKKV   92 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTS-------CHHHHHHHHHHHHH--TTCEEECSCCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccc-------cHHHHHHHHHHHHh--CCCEEEECCEEEEEEEc
Confidence            5789999999999999999986 99999999988653111       11111111111111  134444 4556666422


Q ss_pred             -----eEEecCceEE-eccEEEEcc
Q 022896           91 -----EVLTAEGRRV-VYDYLVIAT  109 (290)
Q Consensus        91 -----~v~~~~~~~~-~~~~vi~a~  109 (290)
                           .+.+.+|... .+|.|++|.
T Consensus        93 ~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          93 SDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             STTCEEEEETTSCEEEEESEEEECC
T ss_pred             CCCeEEEEECCCCEEEeCCEEEEeC
Confidence                 4778888776 579999983

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.73  E-value=8.9e-09  Score=75.43  Aligned_cols=105  Identities=25%  Similarity=0.314  Sum_probs=60.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh--hhhhhcC-Ccccc-ccccccccccc--cceE-Eeeee
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA--SLRAMVE-PSFGK-RSVINHTDYLV--NGRI-VASPA   84 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~--~~~~~~~-~~~~~-~~~~~~~~~~~--~~~~-~~~~v   84 (290)
                      ..||+|||||++|+.+|..|++ |.+++|++..+....++.  .+..... ..... ...........  .... ....+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   82 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence            4789999999999999999986 888777765554322221  1111111 11000 00000000000  1111 12333


Q ss_pred             eeeecc--eEEecCceEEeccEEEEccCCCCCCCC
Q 022896           85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (290)
Q Consensus        85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~  117 (290)
                      ..++.+  .+...++.++.+|.+++++|..|..|.
T Consensus        83 ~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~  117 (185)
T d1q1ra1          83 TAINRDRQQVILSDGRALDYDRLVLATGGRPLIPN  117 (185)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEEEEEC
T ss_pred             eeecccccEEEeeceeEEEeeeeeeeeecccCCCC
Confidence            444433  577888889999999999999877665

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.70  E-value=2e-08  Score=67.60  Aligned_cols=89  Identities=20%  Similarity=0.259  Sum_probs=55.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceE-Eeeeeeeee
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRI-VASPAINIT   88 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~   88 (290)
                      ....+++|||||+.|+.+|..|++ |.+|+|+|+.+.+...+       .+.........+.+  +++++ .+..++.+.
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~-------d~~~~~~l~~~l~~--~GI~i~~~~~v~~i~   90 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGF-------EKQMAAIIKKRLKK--KGVEVVTNALAKGAE   90 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS-------CHHHHHHHHHHHHH--TTCEEEESEEEEEEE
T ss_pred             hcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccc-------cchhHHHHHHHHHh--cCCEEEcCCEEEEEE
Confidence            345899999999999999999976 99999999998753211       11111111111111  13444 355666665


Q ss_pred             cc----eEEe-cCc--eEEeccEEEEc
Q 022896           89 EN----EVLT-AEG--RRVVYDYLVIA  108 (290)
Q Consensus        89 ~~----~v~~-~~~--~~~~~~~vi~a  108 (290)
                      ..    .+.. .++  .++.+|.|+++
T Consensus        91 ~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          91 EREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            43    2333 233  56899999874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.67  E-value=2.2e-08  Score=67.88  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ..+++|||||+.|+-+|..|++ |.+|+++++.+.+.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            4799999999999999999986 99999999987643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.67  E-value=6.2e-09  Score=82.15  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      |++||+||||||+||++|..|++ |++|+||||.+.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            35799999999999999999987 999999999874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.65  E-value=4.3e-08  Score=65.87  Aligned_cols=87  Identities=21%  Similarity=0.280  Sum_probs=57.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc----cCCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEE-eeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV-ASPA   84 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v   84 (290)
                      ...+++|||||+.|+-+|..|+    ++.+|+++|+.+.+-..       ..+..    .....+.++  +++++ +..+
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-------~d~~~----~~~l~~~l~~~GV~v~~~~~v   87 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-------FDHTL----REELTKQLTANGIQILTKENP   87 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-------SCHHH----HHHHHHHHHHTTCEEEESCCE
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-------cchHH----HHHHHHHHHhcCcEEEcCCEE
Confidence            3579999999999999997764    26789999998764311       11111    111111121  44554 4566


Q ss_pred             eeeecc-----eEEecCceEEeccEEEEcc
Q 022896           85 INITEN-----EVLTAEGRRVVYDYLVIAT  109 (290)
Q Consensus        85 ~~~~~~-----~v~~~~~~~~~~~~vi~a~  109 (290)
                      +.+...     .+.+++|.++.+|.|++|.
T Consensus        88 ~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          88 AKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            777532     4788999999999999983

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.64  E-value=2.7e-08  Score=67.60  Aligned_cols=88  Identities=15%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEE-eeeeeee
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV-ASPAINI   87 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v~~~   87 (290)
                      ...+++|||||+.|+-+|..+++ |.+|+++|+.+.+...+       .+..    ...+.+.++  ++.+. ...+..+
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~-------d~~~----~~~l~~~l~~~gv~~~~~~~v~~v   93 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA-------DRDL----VKVWQKQNEYRFDNIMVNTKTVAV   93 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS-------CHHH----HHHHHHHHGGGEEEEECSCEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc-------hhhH----HHHHHHHHHHcCcccccCcEEEEE
Confidence            35899999999999999999987 99999999988654221       1111    111111111  22332 3444555


Q ss_pred             ecc----eEEe--cCc--eEEeccEEEEccC
Q 022896           88 TEN----EVLT--AEG--RRVVYDYLVIATG  110 (290)
Q Consensus        88 ~~~----~v~~--~~~--~~~~~~~vi~a~G  110 (290)
                      ..+    .+.+  .++  ..+.+|.+++|+|
T Consensus        94 ~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          94 EPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             EEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             EEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            432    2333  222  3689999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=4.9e-08  Score=66.07  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ...+++|||||+.|+-+|..|++ |.+|+|+|+++.+-
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            45899999999999999999976 99999999988653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.61  E-value=9.5e-08  Score=67.21  Aligned_cols=94  Identities=17%  Similarity=0.107  Sum_probs=63.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-ee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DT  213 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~  213 (290)
                      .+++|+|||||++|+|+|..+... ....|++++|++.....    ........+...+++++....+.++..+++. ..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~-GA~~V~vi~rr~~~~~~----a~~~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~  118 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRC-GARRVFLVFRKGFVNIR----AVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVA  118 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCGGGCC----SCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHc-CCcceeEEEeCChhhhc----cchhheeecccccceeEeccccEEEEecCCceEE
Confidence            367999999999999999987753 45678899887653221    1122333456678999988887777654443 11


Q ss_pred             EE------cCCC---------cEEeccEEEEccCC
Q 022896          214 YL------TSTG---------DTINADCHFLCTGK  233 (290)
Q Consensus       214 v~------~~~g---------~~~~~d~vv~a~G~  233 (290)
                      +.      ..+|         .+++||.|++|+|.
T Consensus       119 v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         119 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            11      1122         26899999999983

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=7.1e-08  Score=65.23  Aligned_cols=35  Identities=20%  Similarity=0.127  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ...+++|||||+.|+-+|..|++ |.+|+|++++..
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~   54 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL   54 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechh
Confidence            35789999999999999999987 999999998653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.6e-08  Score=65.44  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      .++++|||||+.|+-+|..|++ |.+|+++++++.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            4799999999999999999976 9999999998865

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=2.3e-08  Score=79.59  Aligned_cols=41  Identities=17%  Similarity=0.135  Sum_probs=36.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchh
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWA   52 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~   52 (290)
                      ..+||+||||||+||+||++|++   |++|+|||+++.+|+.+.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW   92 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence            46899999999999999999962   899999999998886653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.52  E-value=1.3e-08  Score=81.24  Aligned_cols=35  Identities=20%  Similarity=0.435  Sum_probs=30.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      +|||+|||+|.+|+.+|..|++  .+.+|+++++.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCCC
Confidence            5899999999999999999986  5889999987653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.51  E-value=3.2e-08  Score=80.12  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=32.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc------cCCcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ------FSADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~------~g~~v~vie~~~~~~   48 (290)
                      +.|||+||||||+||++|..|+      +|++|+||||.+...
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            3699999999999999999994      399999999987543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=2.9e-08  Score=77.68  Aligned_cols=82  Identities=16%  Similarity=0.078  Sum_probs=51.7

Q ss_pred             HhCCcEEEeCceEeecccCCCceeEEcCCC----cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccC
Q 022896          190 ISKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG  265 (290)
Q Consensus       190 ~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~  265 (290)
                      ...++++..++.++.+..+++.+.+.+.+|    +++.+|.+|.|-|......-......         ...........
T Consensus       117 ~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~~---------~~~~~~~~~~~  187 (288)
T d3c96a1         117 RLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQ---------RPLRDPLPHWG  187 (288)
T ss_dssp             HHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTC---------CCCCCCCSCCC
T ss_pred             hccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccceeeeeecccc---------ccccccccccc
Confidence            345788889999988888888877776555    37899999999998753321111110         00011112224


Q ss_pred             CCCeEEeccccCccc
Q 022896          266 QKNIFAIGDITDIRV  280 (290)
Q Consensus       266 ~~~vfa~Gd~~~~~~  280 (290)
                      ..++...||++....
T Consensus       188 ~~~~~~~gda~h~~~  202 (288)
T d3c96a1         188 RGRITLLGDAAHLMY  202 (288)
T ss_dssp             BTTEEECTHHHHCCC
T ss_pred             cCcceecccccceeC
Confidence            567889999876543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.51  E-value=2.4e-08  Score=81.51  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      .+||+||||+|++|+++|.+|++ |++|+|+|++...
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            36999999999999999999976 9999999997643

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.48  E-value=1.3e-07  Score=64.11  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=33.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ....+++|||||..|+-+|..|++ |.+|+|+++++.+.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            345899999999999999999987 99999999988753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.44  E-value=1.1e-06  Score=67.77  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=75.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------CCh-----------------------------
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP-----------------------------  179 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------~~~-----------------------------  179 (290)
                      ..+||+|||+|++|+.+|..|.+  .+.+|+++++.+.....      +.+                             
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDAL   80 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETT
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEecc
Confidence            35799999999999999999987  48999999986542111      001                             


Q ss_pred             ---------------hHHHHHH-HHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          180 ---------------KAGDKTR-DWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       180 ---------------~~~~~~~-~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                                     .....+. ..-...+..++.++.++.+..+++.+.+.+.||+++.+|.+|.|.|....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          81 TGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             TCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             CCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccccc
Confidence                           1111111 22234578889999999998888889999999999999999999998753

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.40  E-value=7.9e-08  Score=77.83  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-----cCCcEEEEcCCCCccc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEI   49 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~~~   49 (290)
                      ..+||||||||+|||+||++|+     +|++|+||||....++
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg   62 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS   62 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence            3699999999999999999984     3899999999876553

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.31  E-value=1.2e-07  Score=62.53  Aligned_cols=79  Identities=13%  Similarity=0.139  Sum_probs=52.6

Q ss_pred             HHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc
Q 022896          132 KIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS  211 (290)
Q Consensus       132 ~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~  211 (290)
                      ....+|+|+|||+|.+|.++|.+|..  ...+++++.+.+.....              ..++...  -.+.++..  .+
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~--~ak~v~~~~~r~~~~~~--------------~~~~~~~--~~i~~~~~--~~   87 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTP--VAKHPIYQSLLGGGDIQ--------------NESLQQV--PEITKFDP--TT   87 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEECTTCCSCB--------------CSSEEEE--CCEEEEET--TT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHH--hcCEEEEEEecCccccc--------------cccceec--CCeeEEec--CC
Confidence            34578999999999999999999986  35566666665543211              1123322  23433433  33


Q ss_pred             eeEEcCCCcEEe-ccEEEEc
Q 022896          212 DTYLTSTGDTIN-ADCHFLC  230 (290)
Q Consensus       212 ~~v~~~~g~~~~-~d~vv~a  230 (290)
                      ..+.+.+|++++ .|.||+|
T Consensus        88 ~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          88 REIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             TEEEETTTEEECCCSEEEEC
T ss_pred             CEEEEcCCCEEeCCCEEEEC
Confidence            457788998876 7999997

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.26  E-value=3.8e-07  Score=74.17  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .++||||||+|++|+.+|.+|++ |++|+|+|++..
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            46999999999999999999976 999999999753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=1.1e-06  Score=66.28  Aligned_cols=91  Identities=14%  Similarity=0.065  Sum_probs=66.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------CChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------IGPKAGDKTRDWLISKKVDVKLGERVNLDS  206 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~  206 (290)
                      .+|+|||+|++|+.+|..|.....+.+|+++++.+.+...          ....+.......+++.|++++.++.|.   
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---   78 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG---   78 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT---
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeC---
Confidence            3899999999999999999876678899999998876421          122455667778888999999888762   


Q ss_pred             cCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896          207 VSEGSDTYLTSTGDTINADCHFLCTGKPVG  236 (290)
Q Consensus       207 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  236 (290)
                      .+.....+      .-.+|.+++|+|.++.
T Consensus        79 ~~~~~~~l------~~~~d~v~~a~Ga~~~  102 (230)
T d1cjca2          79 RDVTVQEL------QDAYHAVVLSYGAEDK  102 (230)
T ss_dssp             TTBCHHHH------HHHSSEEEECCCCCEE
T ss_pred             ccccHHHH------HhhhceEEEEeecccc
Confidence            11000000      1258999999998753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.15  E-value=5.7e-07  Score=72.82  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .||+||||||++|+.+|.+|++ |.+|+|+|++..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            5999999999999999999976 999999999853

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.14  E-value=5.9e-07  Score=72.89  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .||||||+|++|+.+|.+|++ |++|+|+|++..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            589999999999999999975 999999999754

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.14  E-value=5.7e-07  Score=72.55  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      .||+||||||++|+.+|.+|++..+|+|||++..
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCCCCEEEEecCCC
Confidence            5999999999999999999988899999999874

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.06  E-value=1.2e-06  Score=71.71  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCCc
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEYF   47 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~~   47 (290)
                      .||+||||||++|+.+|.+|.+ + .+|+|||++...
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            5999999999999999999986 5 799999999753

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.06  E-value=1.4e-06  Score=71.20  Aligned_cols=36  Identities=25%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~   47 (290)
                      ..||+||||||.+|+.+|.+|.+  +.+|+|||++...
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYE   53 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCC
Confidence            35999999999999999999975  5899999998653

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.05  E-value=2.2e-07  Score=70.85  Aligned_cols=30  Identities=37%  Similarity=0.309  Sum_probs=25.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDP   43 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~   43 (290)
                      ++|+|||||++||++|++|++ |++|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            479999999999999999976 877665555

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=2.5e-05  Score=57.95  Aligned_cols=95  Identities=18%  Similarity=0.127  Sum_probs=64.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-cc---------cc--------CCh------hHHHHHHHHHHh-
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LL---------EF--------IGP------KAGDKTRDWLIS-  191 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~-~~---------~~--------~~~------~~~~~~~~~~~~-  191 (290)
                      -.|+|||+|+.|+++|...+.  .+.++.+++.... +.         ..        .+.      .....+++.++. 
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR--~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~   80 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGL   80 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTC
T ss_pred             CcEEEECcCHHHHHHHHHHHH--CCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhh
Confidence            469999999999999998885  5899988875421 10         00        000      111223334433 


Q ss_pred             CCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCC
Q 022896          192 KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  234 (290)
Q Consensus       192 ~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  234 (290)
                      .+++++.+..+ ++..+++. ..|.+.+|.++.+..||++||.-
T Consensus        81 ~nL~i~q~~V~-dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          81 RPLHLFQATAT-GLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TTEEEEECCEE-EEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             cCHHHHhccce-eeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            48898877554 44444444 67899999999999999999964

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.00  E-value=4.6e-07  Score=70.48  Aligned_cols=33  Identities=15%  Similarity=0.425  Sum_probs=28.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCcc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSR  172 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~-~~v~~~~~~~~  172 (290)
                      +|+|||+|.+|+.+|..|.++  + .+|+++++.+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~--G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEA--GITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhC--CCCcEEEEECCCC
Confidence            699999999999999999974  6 47999998654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.93  E-value=4.4e-05  Score=53.15  Aligned_cols=36  Identities=28%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCc-EEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~   47 (290)
                      ...+|+|||||-+|+-+|.+|.+ |.+ |+++.+++..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            35689999999999999999865 754 8899887653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.91  E-value=1.5e-05  Score=59.68  Aligned_cols=39  Identities=23%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhh-------------------CCCCeEEEEecCccc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVD-------------------FPEKKVTLVHKGSRL  173 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~-------------------~~~~~v~~~~~~~~~  173 (290)
                      .+++|+|||+|++|+|+|..+...                   ..-.+|+++.|+...
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            479999999999999999988742                   134689999987653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.90  E-value=5.4e-05  Score=58.35  Aligned_cols=36  Identities=33%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCC-CeEEEEecCcccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLL  174 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~-~~v~~~~~~~~~~  174 (290)
                      -+|+|||+|++|+-+|..|.+  .+ .+|+++++.+.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~--~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHh--CCCCeEEEEeCCCCCC
Confidence            479999999999999999987  47 4899999987654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=7.2e-06  Score=52.14  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .++|+|+|.|.+|+++|.+|.+ |.+|+++|.+..
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            5789999999999999999975 999999998664

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.74  E-value=4.3e-05  Score=53.55  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             CCcEEEE--cCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896           13 NKRVVVI--GGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (290)
Q Consensus        13 ~~dvvII--GaG~aGl~~A~~L~~-g~~v~vie~~~~~~   48 (290)
                      ...++||  |||..|+.+|..|++ |.+|+++++.+.+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            4556666  999999999999976 99999999987654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.73  E-value=0.0001  Score=57.24  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=69.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--c-----C--------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--F-----I--------------------------------  177 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~--~-----~--------------------------------  177 (290)
                      .+|+|||+|++|+-+|..|..+  +.+|.++++.+....  .     +                                
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~   80 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFA   80 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEET
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEec
Confidence            3799999999999999999975  889999997653100  0     0                                


Q ss_pred             ---------------------ChhHHHHHHHHHHhCCcEEEeCceE-eecccCCCceeEEc-CCCc--EEeccEEEEccC
Q 022896          178 ---------------------GPKAGDKTRDWLISKKVDVKLGERV-NLDSVSEGSDTYLT-STGD--TINADCHFLCTG  232 (290)
Q Consensus       178 ---------------------~~~~~~~~~~~~~~~gi~~~~~~~v-~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G  232 (290)
                                           ...+.+.+.+.+++.+..+...+.. ..+..++++..+.. .+|+  ++.+|.||.|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG  160 (292)
T d1k0ia1          81 GQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDG  160 (292)
T ss_dssp             TEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCC
T ss_pred             ccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCC
Confidence                                 1235555677777777766666544 44455555666654 4554  578999999999


Q ss_pred             CCCCc
Q 022896          233 KPVGS  237 (290)
Q Consensus       233 ~~~~~  237 (290)
                      .....
T Consensus       161 ~~S~v  165 (292)
T d1k0ia1         161 FHGIS  165 (292)
T ss_dssp             TTCST
T ss_pred             CCCcc
Confidence            87643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.71  E-value=4.1e-06  Score=63.27  Aligned_cols=39  Identities=31%  Similarity=0.459  Sum_probs=34.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~  175 (290)
                      ..++++|||+|++|+.+|..|+.  .+.+++++++.+.+..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGG   86 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHH--hccceeeEeeccccCC
Confidence            57999999999999999999997  4899999998887643

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=3e-05  Score=57.55  Aligned_cols=38  Identities=16%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhh-------------------hCCCCeEEEEecCcc
Q 022896          135 SARSILIVGGGPTGVELAGEIAV-------------------DFPEKKVTLVHKGSR  172 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~-------------------~~~~~~v~~~~~~~~  172 (290)
                      .+++|+|||+|++|+|+|..+..                   +..-.+|+++.|+..
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            37999999999999999987752                   234567999988754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=6.2e-05  Score=53.04  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=22.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SAD   37 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~   37 (290)
                      ..++|+|||||..|+-+|..|.+ |.+
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            35899999999999999999986 654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.63  E-value=7.1e-05  Score=56.05  Aligned_cols=36  Identities=17%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ..+|+|+|||+|.+|.|+|.++...  +.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~--~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhh--hcccccccccc
Confidence            4789999999999999999999874  67777766554

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=2e-05  Score=59.38  Aligned_cols=91  Identities=12%  Similarity=-0.011  Sum_probs=65.3

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhh-----CCCCeEEEEecCcccccc----------CChhHHHHHHHHHHhCCcEEEeCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVD-----FPEKKVTLVHKGSRLLEF----------IGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~-----~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      +.+|+|||+|++|+.+|..|..+     ..+.+|+++++.+.+...          ............+...|++++.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            46899999999999999999875     234689999998865431          123556667777888999999998


Q ss_pred             eEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896          201 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       201 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      .+.....      +   +.-...+|.+++|+|.++
T Consensus        82 ~v~~~~~------~---~~~~~~~~~v~~atGa~~  107 (239)
T d1lqta2          82 VVGEHVQ------P---GELSERYDAVIYAVGAQS  107 (239)
T ss_dssp             CBTTTBC------H---HHHHHHSSEEEECCCCCE
T ss_pred             Eeccccc------h---hhhhccccceeeecCCCc
Confidence            7621110      0   011246899999999865

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.59  E-value=9.5e-05  Score=50.62  Aligned_cols=109  Identities=15%  Similarity=0.111  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEc------CchhHHHHHHH----HhhhCCCCeEEEEecCccccc--cCChhHHHHHHHHH
Q 022896          122 RLNQYQAENQKIKSARSILIVG------GGPTGVELAGE----IAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKTRDWL  189 (290)
Q Consensus       122 ~~~~~~~~~~~~~~~~~v~iiG------~g~~~~~~a~~----l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~  189 (290)
                      ....+...++.+..+.++++.-      ++....+.+..    ++++....++.++...+....  .+.+.+.+.+.+.+
T Consensus        19 ~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~   98 (141)
T d1fcda2          19 QTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGT   98 (141)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHH
Confidence            3444555555556676776542      22334454443    444445567777776554211  12233455566666


Q ss_pred             HhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEc
Q 022896          190 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLC  230 (290)
Q Consensus       190 ~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a  230 (290)
                      ++.||+++.+...+.++++.....+.+.+|+++++|++.+.
T Consensus        99 ~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          99 ENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI  139 (141)
T ss_dssp             SSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred             HhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence            78899999987655577777777888899999999999885

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.58  E-value=2.4e-05  Score=56.24  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .++|+|||||-.|..+|.+|.+ |++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            4789999999999999999976 999999999874

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.51  E-value=0.00061  Score=44.03  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=28.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..++|+|||+|.+|+-.|.+|++ ..+++++.+.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            46999999999999999999987 55666666544

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00012  Score=49.00  Aligned_cols=39  Identities=33%  Similarity=0.459  Sum_probs=34.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      -..++|+|||+|-+++-.|.+|.+ ..+|+++-|++.+..
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~   64 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA   64 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccc
Confidence            357899999999999999999988 788999999887643

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00018  Score=48.20  Aligned_cols=39  Identities=38%  Similarity=0.408  Sum_probs=34.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      -..++|+|||+|.+.+-.|.+|.+ ..+|+++-|++.+..
T Consensus        28 ~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~   67 (126)
T d1fl2a2          28 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA   67 (126)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS
T ss_pred             cCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc
Confidence            347999999999999999999987 788999999876543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.40  E-value=5.9e-05  Score=54.32  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +++.|||+|..|+++|..|.+ |++|+++++++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            689999999999999999975 999999999753

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.37  E-value=0.0015  Score=52.48  Aligned_cols=144  Identities=16%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhh----CCCCeEEEEecCcccccc------------------------------------
Q 022896          137 RSILIVGGGPTGVELAGEIAVD----FPEKKVTLVHKGSRLLEF------------------------------------  176 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~----~~~~~v~~~~~~~~~~~~------------------------------------  176 (290)
                      -.|+|||+|++|+.+|..|++.    ..+.+|.++++...+...                                    
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~  112 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  112 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEE
Confidence            4788888888888888777641    247788888765432110                                    


Q ss_pred             --------------------------CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE--------cCCC---
Q 022896          177 --------------------------IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL--------TSTG---  219 (290)
Q Consensus       177 --------------------------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~--------~~~g---  219 (290)
                                                ....+...+.+..++.|+++.....+..+..++++....        ..++   
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  192 (380)
T d2gmha1         113 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  192 (380)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             EeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeeccccccccccccccc
Confidence                                      011455567788889999999999998887766542211        1111   


Q ss_pred             ------cEEeccEEEEccCCCCCc--hhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896          220 ------DTINADCHFLCTGKPVGS--DWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  283 (290)
Q Consensus       220 ------~~~~~d~vv~a~G~~~~~--~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~  283 (290)
                            ....++..+++.|.....  +++....+.....+.+.+.   .......+++..+||+++.-++.+
T Consensus       193 ~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~---sip~l~~~G~lLVGDAAG~vnP~~  261 (380)
T d2gmha1         193 TTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQ---SIPKLTFPGGLLIGCSPGFMNVPK  261 (380)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGG---GCCCCEETTEEECTTTTCCCBTTT
T ss_pred             ccccccccccccEEEEeeeCCCcchHHHHhhhhhccccccccccc---cccccccCCeeEEeccccccchhh
Confidence                  235578888998876432  2333333222222222110   011124689999999999877654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.29  E-value=9.6e-05  Score=52.30  Aligned_cols=34  Identities=32%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .-+|+|||||.+|+.||..+.. |.+|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            5799999999999999999987 999999999774

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.28  E-value=0.00011  Score=51.30  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .-+|+|||+|.+|+.|+..+++ |.+|+++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            5899999999999999999987 99999999865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.26  E-value=7.9e-05  Score=50.53  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|+|+|+|..|..+|..|.+ |++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            479999999999999999974 999999999764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00011  Score=51.84  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|+|||+|..|...|..|.+ |++|++++|++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            579999999999999999976 999999999764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.22  E-value=0.00095  Score=44.70  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=34.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~   49 (290)
                      -..++|+|||+|-+.+-.|.+|.+ -.+|+++-|++.+..
T Consensus        32 frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          32 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            347999999999999999999988 788999999887654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.08  E-value=0.00013  Score=49.46  Aligned_cols=33  Identities=33%  Similarity=0.409  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++++|||+|..|..+|..|.+ |++|+++|+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            468999999999999999975 999999999764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.98  E-value=0.0037  Score=47.75  Aligned_cols=100  Identities=14%  Similarity=0.102  Sum_probs=67.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC---------------C---------------------
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI---------------G---------------------  178 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~---------------~---------------------  178 (290)
                      ....|+|||+|++|+.+|..|++ ..+.+|+++++.+.+....               .                     
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~-~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  110 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVK  110 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEES
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-ccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceec
Confidence            45779999999999999999875 3699999999887542110               0                     


Q ss_pred             ---hhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EE--------------cCCCcEEeccEEEEccCCCC
Q 022896          179 ---PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL--------------TSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       179 ---~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~--------------~~~g~~~~~d~vv~a~G~~~  235 (290)
                         ..+...+.+.++..++.+..++.+..+...++.+. +.              ..++..+.++.++.++|...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         111 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             CHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             ccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence               01222334445566788888887766655544321 11              12335788999999999754

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.98  E-value=0.0008  Score=49.99  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=28.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..++|+|||+|-+|+-+|..|.+ +.+++++-+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999976 77777765554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00024  Score=49.25  Aligned_cols=33  Identities=36%  Similarity=0.613  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (290)
                      ..++++|||||..|+.-|..|.+ |.+|+|+.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999999999977 9999999754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.92  E-value=0.00044  Score=47.93  Aligned_cols=39  Identities=28%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             hccCCCCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCC
Q 022896            8 QSEGKNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (290)
Q Consensus         8 ~~~~~~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (290)
                      +++.++++|.|||+|-.|.++|+.|.. + .++.++|.++.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            456678999999999999999988864 4 48999998764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0031  Score=46.27  Aligned_cols=138  Identities=20%  Similarity=0.244  Sum_probs=95.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-------------------------------c----cCC----
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------------------------------E----FIG----  178 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-------------------------------~----~~~----  178 (290)
                      .++|||+|+.|+++|..++.  .+.+|.++++...-.                               .    .+.    
T Consensus         5 DviIIG~GpaG~~aA~~aar--~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAE--LGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVI   82 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhh
Confidence            58999999999999999986  588999998643100                               0    000    


Q ss_pred             --------hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch--------hhcc
Q 022896          179 --------PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD--------WLKD  242 (290)
Q Consensus       179 --------~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~--------~l~~  242 (290)
                              ..+.....+.++..|++++.+.-.   ........+.. ....+.++.+++++|..|..+        .|..
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~---~~~~~~~~~~~-~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          83 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAA---FTSDPKPTIEV-SGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCE---ECSCSSCEEEE-TTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhhhheEEeeeccchhhhhccCceEEEEEeee---eccccceeeee-eccccccceeEEecCccccCCCccccCCCCcCc
Confidence                    012223455678889999877643   12222233333 335789999999999766543        2222


Q ss_pred             cccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896          243 TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  282 (290)
Q Consensus       243 ~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~  282 (290)
                      ...+++++++|+|.||+++|| +.|+|||+|||++.+...
T Consensus       159 ~~~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~~~~l~  197 (221)
T d3grsa1         159 NKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCGKALLT  197 (221)
T ss_dssp             GGTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGTSSCCH
T ss_pred             hhcCcEECCCccEEeCCCccc-cCCcEEEEEEccCCcCcH
Confidence            334557899999999999998 899999999999876544

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00047  Score=49.79  Aligned_cols=34  Identities=38%  Similarity=0.534  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      -.+|.|||||.-|.+.|..++. |++|+++|+++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4789999999999999999875 999999999874

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.00055  Score=56.31  Aligned_cols=56  Identities=9%  Similarity=-0.108  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHhCCcEEEeCceEeecccC--CCc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896          180 KAGDKTRDWLISKKVDVKLGERVNLDSVS--EGS-DTYLTSTGDTINADCHFLCTGKPV  235 (290)
Q Consensus       180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~d~vv~a~G~~~  235 (290)
                      ++.+.+-+...-.|..++.++.|+.+..+  ++. ..+...+|+++.++.+|....+-|
T Consensus       377 EipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p  435 (491)
T d1vg0a1         377 ELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLS  435 (491)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBC
T ss_pred             hHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCC
Confidence            88889999999999999999999988764  333 456678899999999999877665

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.77  E-value=0.00042  Score=50.53  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|.|||.|..|+.+|..|++ |++|+.+|.++.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            469999999999999999975 999999998763

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.77  E-value=0.00052  Score=44.88  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..++|+|||+|..|..-|..|.+ |.+|+++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            46899999999999999999976 999999987553

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.001  Score=45.91  Aligned_cols=38  Identities=21%  Similarity=0.496  Sum_probs=33.0

Q ss_pred             ccCCCCcEEEEc-CChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896            9 SEGKNKRVVVIG-GGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus         9 ~~~~~~dvvIIG-aG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++....+|.||| .|.-|-+.|..|++ |++|+++|++..
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            445578999999 69999999999976 999999999764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.69  E-value=0.00058  Score=46.84  Aligned_cols=35  Identities=23%  Similarity=0.438  Sum_probs=30.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~   46 (290)
                      ++++|.|||+|..|.++|+.|.. +  .++.++|.++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            46799999999999999999964 4  58999998763

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.68  E-value=0.00041  Score=49.93  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +.+|+|||||.-|.+.|..|.+ |++|+++.+++.
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            4689999999999999999986 899999998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.64  E-value=0.00074  Score=48.47  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhc-cCCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (290)
                      -.+|.|||||..|.+.|..+. .|++|+++|+++.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            478999999999999998876 4999999999764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.58  E-value=0.00079  Score=48.77  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      ++|.|||.|..||.+|..|++|++|+.+|-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHHCCCcEEEEECCHH
Confidence            469999999999999998888999999998874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.44  E-value=0.0012  Score=46.30  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++|.|||.|..|.+.|..|++ |++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            469999999999999999975 99999999975

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0024  Score=41.34  Aligned_cols=37  Identities=27%  Similarity=0.322  Sum_probs=32.9

Q ss_pred             cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .....+|.|+|||.-|-..|..+++ |+++.++|+++.
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            3346789999999999999999988 999999999875

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.002  Score=42.37  Aligned_cols=38  Identities=18%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             ccCCCCcEEEEcCCh-----------HHHHHHHHhcc-CCcEEEEcCCCC
Q 022896            9 SEGKNKRVVVIGGGV-----------AGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus         9 ~~~~~~dvvIIGaG~-----------aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +.+..++|+|||+||           ++..|++.|++ |++++++..++.
T Consensus         3 ~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           3 KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            344568999999997           58888899987 999999999875

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.32  E-value=0.0017  Score=51.02  Aligned_cols=47  Identities=15%  Similarity=0.143  Sum_probs=37.5

Q ss_pred             HHHHhCCcEEEeCceEeecccCCCceeEEc----CCCcEEeccEEEEccCC
Q 022896          187 DWLISKKVDVKLGERVNLDSVSEGSDTYLT----STGDTINADCHFLCTGK  233 (290)
Q Consensus       187 ~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~----~~g~~~~~d~vv~a~G~  233 (290)
                      ..+++.|++++.+++|++++.+++++.+..    .++++++||.||+|++.
T Consensus       243 ~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         243 AMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCH
T ss_pred             HHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCH
Confidence            335667999999999999999888866642    34468999999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.24  E-value=0.0018  Score=46.12  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++|.|||+|.-|.+.|..|.+ |++|+++.|..
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~   33 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEF   33 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            579999999999999999986 99999997743

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.12  E-value=0.0032  Score=43.58  Aligned_cols=35  Identities=31%  Similarity=0.424  Sum_probs=29.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhc-cC--CcEEEEcCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~-~g--~~v~vie~~~   45 (290)
                      .++.+|.|||+|-.|-++|+.|. ++  -++.++|.++
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            34689999999999999999996 35  4799999875

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.10  E-value=0.0043  Score=48.36  Aligned_cols=38  Identities=24%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~  175 (290)
                      .++++|||+|.+|+-+|..|++  .+.+|++++++++++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k--~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHh--CCCCEEEEECCCCCcC
Confidence            5899999999999999999996  4899999999888754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.86  E-value=0.0027  Score=45.67  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=28.7

Q ss_pred             CcEEEE-cCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVI-GGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvII-GaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++|+|| |+|--|.+.|..|.+ |++|++.+|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999 679999999999986 99999999976

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.85  E-value=0.0033  Score=43.02  Aligned_cols=35  Identities=37%  Similarity=0.528  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~   46 (290)
                      ...+|.|||+|-.|.++|+.|.. +  -++.++|.++.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            35789999999999999999964 4  47999998653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.80  E-value=0.0044  Score=42.03  Aligned_cols=33  Identities=36%  Similarity=0.536  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (290)
                      .+|.|||+|..|.++|+.|.. + .++.++|.++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            589999999999999999964 4 48999998664

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0062  Score=47.88  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=33.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~  175 (290)
                      +..||+|||+|.+|+.+|..|.+  .+.+|+++++++++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~--~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCcc
Confidence            45789999999999999999997  4889999998887643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.005  Score=43.12  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....|+|+|+|+.|+.++..++. |.+|+++++++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            35789999999999998887764 999999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.72  E-value=0.045  Score=35.12  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=29.8

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~  170 (290)
                      .+++++|+|+|..|..-+..|.+  .+.+++++.+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecc
Confidence            57999999999999999999987  48899988754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0077  Score=38.99  Aligned_cols=35  Identities=14%  Similarity=0.324  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCCh-----------HHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGV-----------AGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~-----------aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..++|+|||+||           ++..|++.|++ |++++++..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            468899999996           68889999987 999999999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.66  E-value=0.0039  Score=43.73  Aligned_cols=35  Identities=23%  Similarity=0.197  Sum_probs=29.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....|+|+|+|+.|+.++..++. |.+|+++|+++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            35679999999999999988864 999999998763

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0041  Score=43.68  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ...|+|+|+|+.|+.++..++. |. +|+++|+++.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            4679999999999999998874 87 7999998753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0076  Score=35.85  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (290)
                      +.|.|||||.-|-..+...++ |.++.++|+++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            579999999999999999988 9999999997753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.47  E-value=0.0048  Score=42.04  Aligned_cols=33  Identities=33%  Similarity=0.496  Sum_probs=28.0

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~   46 (290)
                      ++|.|||+|..|.++|+.|.. +  .++.++|.++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            689999999999999999863 4  58999998653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.0051  Score=42.91  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=29.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...+|+|+|+|+.|+.++..++. |.+|+++|+++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            35779999999999998887764 99999999875

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.45  E-value=0.0066  Score=41.16  Aligned_cols=33  Identities=30%  Similarity=0.408  Sum_probs=28.4

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~   46 (290)
                      ++|.|||||-.|.++|+.|.. +  .++.++|.++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            479999999999999999964 3  58999998774

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.0063  Score=42.02  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=28.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~   45 (290)
                      +.+|.|||+|-.|.++|+.|.. +  .++.++|.++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4689999999999999999964 4  4799999865

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.37  E-value=0.009  Score=44.63  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ..++|+|||+|.+|+.+|..|+++  +.+|+++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARK--GYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            457999999999999999999974  88999999753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.011  Score=45.62  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~  175 (290)
                      +++|||+|.+|+-+|..|++.  +.+|++++++++++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSSSG
T ss_pred             cEEEECCcHHHHHHHHHHHhC--CCcEEEEECCCCccc
Confidence            689999999999999999873  889999999887654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.25  E-value=0.0096  Score=41.86  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ....|+|+|+|+.|+.++..++. |. +|+++|+++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            35789999999999999998875 86 799999865

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0086  Score=41.94  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..++|+|+|+|-++-++++.|.+ |.+++|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            35899999999999999999975 88999999865

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.22  E-value=0.0094  Score=40.32  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=27.1

Q ss_pred             CcEEEEcCChHHHHHHHHhc-cC--CcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (290)
                      .+|.|||+|-.|.++|+.|. ++  .++.++|.++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            58999999999999999996 33  47999998774

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.12  E-value=0.01  Score=45.45  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~  174 (290)
                      +|+|||+|.+|+.+|..|.+  .+.+|+++++.+.+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCC
Confidence            68999999999999999997  488999999987653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.006  Score=43.30  Aligned_cols=34  Identities=26%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ..+|+|+|+|+.|+.++..++. |. +|+++|+++.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccc
Confidence            4789999999999999988864 86 7999998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.014  Score=39.90  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      -.++|+|.|..|..++..|.+ |.+++++|.++.
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            459999999999999999975 999999998763

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.93  E-value=0.19  Score=39.14  Aligned_cols=34  Identities=47%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhh--CCCCeEEEEecC
Q 022896          137 RSILIVGGGPTGVELAGEIAVD--FPEKKVTLVHKG  170 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~--~~~~~v~~~~~~  170 (290)
                      -.|+|||+|..|+-+|..++..  ..+.+|.++++.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            3678888888887777766531  247788888754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.92  E-value=0.01  Score=40.24  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=27.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHhcc-C--CcEEEEcCCCC
Q 022896           14 KRVVVIGG-GVAGSLVAKSLQF-S--ADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGa-G~aGl~~A~~L~~-g--~~v~vie~~~~   46 (290)
                      ++|.|||| |..|.++|+.|.. +  .++.++|.++.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            47999996 9999999999964 5  48999998754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.85  E-value=0.01  Score=40.15  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=27.6

Q ss_pred             CcEEEEcCChHHHHHHHHhc-cC--CcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~-~g--~~v~vie~~~   45 (290)
                      .+|.|||+|..|.++|+.|. ++  .++.++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            57999999999999999996 34  4799999765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.82  E-value=0.013  Score=40.94  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=27.7

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CC--cEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~--~v~vie~~~~   46 (290)
                      +++.|||.|--|.+.|+.|++ |+  +|..+|++..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            469999999999999999975 54  6888898653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.019  Score=39.15  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~  170 (290)
                      .+++++|+|||..|.+-+..|.+.  +.+|+++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            589999999999999999999974  8999999754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.78  E-value=0.014  Score=40.60  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ..++|+|+|+|-++-++++.|.+ |. +++|+.|+..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            35789999999999999999975 74 7999988653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.75  E-value=0.01  Score=39.98  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=27.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~   45 (290)
                      +++.|||+|-.|.++|+.|..   ..++.++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            479999999999999999853   35899999765

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.74  E-value=0.011  Score=40.92  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|-|||-|.-|...|..|.+ |++|.++|+++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            369999999999999999965 999999999653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.73  E-value=0.012  Score=40.85  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++|.+||-|.-|...|..|.+ |++|.++|++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            569999999999999999975 99999999865

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.71  E-value=0.016  Score=42.97  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=32.8

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE  175 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~  175 (290)
                      .-.|+|||+|.+|+-+|..|++  .+.+|.++++++.+..
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCCc
Confidence            3468999999999999999997  4899999999887643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.71  E-value=0.024  Score=44.38  Aligned_cols=38  Identities=34%  Similarity=0.560  Sum_probs=31.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhh---hCCCCeEEEEecCcccc
Q 022896          137 RSILIVGGGPTGVELAGEIAV---DFPEKKVTLVHKGSRLL  174 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~---~~~~~~v~~~~~~~~~~  174 (290)
                      -.|+|||+|++|+-+|..|++   +..+.+|+++++.+.+.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            469999999999999999974   24689999999887653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.66  E-value=0.016  Score=40.81  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|-|||-|.-|...|.+|.+ |++|.++|+++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            579999999999999999975 999999998653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.63  E-value=0.017  Score=40.57  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +.+|-|||-|.-|...|..|.+ |++|.++|+++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3679999999999999999975 999999999774

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.014  Score=40.62  Aligned_cols=35  Identities=29%  Similarity=0.272  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....|+|+|+|+.|+.++..++. |.+++++++++.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            35789999999999999877764 999999998664

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.60  E-value=0.011  Score=39.07  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=26.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc--CCc-EEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF--SAD-VTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~--g~~-v~vie~~~~   46 (290)
                      +++++|+|||-+|-+.+.++..  +++ +..||.++.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            5789999999999999998854  666 455666553

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.57  E-value=0.02  Score=39.03  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=28.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (290)
                      +.+|.|||+|-.|-++|+.|.. + .++.++|.++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            4689999999999999988754 3 47999998664

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=0.038  Score=42.57  Aligned_cols=39  Identities=28%  Similarity=0.473  Sum_probs=34.2

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ...+|+|||+|+.|+.+|..|.++..+.+|+++++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            456799999999999999999976679999999987664

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.52  E-value=0.013  Score=39.60  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=27.3

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~   45 (290)
                      +++.|||+|-.|.++|+.|.. +  .++.++|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            479999999999999999863 4  4799999765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.43  E-value=0.019  Score=40.31  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=28.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ....|+|+|+|+.|+.++..++. |. +|++.|.++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            34679999999999999999975 87 5777787653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.09  E-value=0.019  Score=40.34  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (290)
                      ...|+|+|+|+.|+.++..++. | .+|+++|.++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            4569999999999999999975 7 58999998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.06  E-value=0.02  Score=35.63  Aligned_cols=38  Identities=21%  Similarity=0.145  Sum_probs=31.9

Q ss_pred             hccCCCCcEEEEcCChHHHHH-HHHhcc-CCcEEEEcCCC
Q 022896            8 QSEGKNKRVVVIGGGVAGSLV-AKSLQF-SADVTLIDPKE   45 (290)
Q Consensus         8 ~~~~~~~dvvIIGaG~aGl~~-A~~L~~-g~~v~vie~~~   45 (290)
                      |++...+++-+||-|=+|+++ |..|.. |++|+--|...
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            345567899999999999999 788864 99999999865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.01  E-value=0.018  Score=39.99  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ....|+|+|+|+.|+.++..++. |.+|++++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            35789999999999998888765 89999999865

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.01  E-value=0.022  Score=38.91  Aligned_cols=33  Identities=24%  Similarity=0.160  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ++|.|||.|-.|.+.|..|.+ |++++++++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            469999999999999999975 999999988664

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.96  E-value=0.024  Score=43.10  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCCCCc
Q 022896           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~~~~   47 (290)
                      ++++|+|+|| |..|-.++.+|. +|++|++++|+...
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            3689999998 999999999995 59999999997643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.87  E-value=0.026  Score=43.15  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=30.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (290)
                      +.+|+|+|| |..|..++.+|. +|++|+++.|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            577999997 999999999996 5999999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.033  Score=43.51  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=30.7

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~  174 (290)
                      .|+|||+|.+|+.+|..|.+  .+.+|+++++.+.+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~--~G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH--TTCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCc
Confidence            48999999999999999997  488999999877653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.75  E-value=0.033  Score=38.31  Aligned_cols=34  Identities=35%  Similarity=0.444  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ...+++|||+|..|-.+|.+|.. |. +++|+-|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            46889999999999999999975 86 588888863

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.71  E-value=0.035  Score=41.34  Aligned_cols=36  Identities=28%  Similarity=0.482  Sum_probs=31.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ..+|+|||+|++|+.+|..+.+  .+.+|.++++.+.+
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~--~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKI   39 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence            3579999999999999999997  48999999988654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.69  E-value=0.046  Score=38.07  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      .|+++|+|+|..|..+|..|.+.  +.+|+++.|...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChH
Confidence            68999999999999999999974  789999998754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.66  E-value=0.027  Score=38.00  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=26.2

Q ss_pred             cEEEEcC-ChHHHHHHHHhcc-C--CcEEEEcCCC
Q 022896           15 RVVVIGG-GVAGSLVAKSLQF-S--ADVTLIDPKE   45 (290)
Q Consensus        15 dvvIIGa-G~aGl~~A~~L~~-g--~~v~vie~~~   45 (290)
                      +|.|||| |..|.++|+.|.. +  -++.++|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999974 4  4699999764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.029  Score=40.38  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (290)
                      +++|+|+|| |..|-.++.+|. +|++|+++.|+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            478999995 999999999885 599999999865

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.61  E-value=0.025  Score=40.43  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=27.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc-cCC-cEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (290)
                      ...+|+|+|+|+.|+.++..++ .|. +|+++|.++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3578999999999999998886 454 788888865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.41  E-value=0.21  Score=33.55  Aligned_cols=37  Identities=19%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ...++.|||+|..|..+|..|.......++.+++..+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4579999999999999999998865567899998765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.40  E-value=0.04  Score=40.79  Aligned_cols=35  Identities=34%  Similarity=0.634  Sum_probs=30.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      -.|+|||+|++|+.+|..|.+  .+.+|.++++.+.+
T Consensus         3 yDViIIGaG~aGl~aA~~la~--~G~~V~liEk~~~~   37 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKL   37 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence            368999999999999999987  48999999987654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.39  E-value=0.044  Score=37.30  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++.|||+|--|-+.|..|.+ ++++++.+++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            468999999999999999975 89999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.31  E-value=0.05  Score=39.33  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=31.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ...++|||+|+.|+.+|..++.  .+.+|.++++.+.+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~~~   38 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCC
Confidence            3579999999999999999987  48999999987665

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.031  Score=38.35  Aligned_cols=34  Identities=29%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+.++|||-|..|-.+|..|+. |.+|++.|.++
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            46899999999999999999985 99999999975

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.24  E-value=0.12  Score=34.87  Aligned_cols=38  Identities=11%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      .++++.|||+|..|..+|..+.......++.+++..+.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            46799999999999999999887655678998887653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.21  E-value=0.045  Score=41.09  Aligned_cols=32  Identities=28%  Similarity=0.548  Sum_probs=29.1

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      +|+|||+|..|+.+|..|+++  +.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKE--NKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            599999999999999999984  78999999865

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.064  Score=32.97  Aligned_cols=80  Identities=18%  Similarity=0.178  Sum_probs=52.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  214 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v  214 (290)
                      .+|+++|+|-|.+|..+|..|.+  .+.+|++++......      ....    + +.++.+..+..             
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~~~~------~~~~----~-~~~~~~~~~~~-------------   57 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTPP------GLDK----L-PEAVERHTGSL-------------   57 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSSSCT------TGGG----S-CTTSCEEESBC-------------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCcCch------hHHH----H-hhccceeeccc-------------
Confidence            57899999999999999999987  488999988755421      1110    1 11333222210             


Q ss_pred             EcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896          215 LTSTGDTINADCHFLCTGKPVGSDWLKD  242 (290)
Q Consensus       215 ~~~~g~~~~~d~vv~a~G~~~~~~~l~~  242 (290)
                        .+...-.+|.+|+++|..++.+++..
T Consensus        58 --~~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          58 --NDEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             --CHHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             --chhhhccCCEEEECCCCCCCCHHHHH
Confidence              00112368999999999988877655

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.034  Score=35.84  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=27.1

Q ss_pred             cCCeEEEEcCch-----------hHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          135 SARSILIVGGGP-----------TGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       135 ~~~~v~iiG~g~-----------~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      ..++++|+|+|+           ++.+++..|++  .+.++.++...+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~--~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE--DGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH--TTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHh--cCCeEEEEecChh
Confidence            357899999875           56777777876  4888888877665

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.045  Score=36.94  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=26.2

Q ss_pred             CcEEEEc-CChHHHHHHHHhc-c---CCcEEEEcCCC
Q 022896           14 KRVVVIG-GGVAGSLVAKSLQ-F---SADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIG-aG~aGl~~A~~L~-~---g~~v~vie~~~   45 (290)
                      ++|.||| +|..|-++|+.|. +   ..++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4799999 5999999999874 2   46899999754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.15  E-value=0.044  Score=38.31  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=28.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ...|+|+|+|+.|+.++..++. |. +|+++|.++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            4679999999999999999975 74 688888865

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.14  E-value=0.039  Score=36.37  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             CcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (290)
                      +.++|+|.|..|..++..|+ +.++.++|.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~-~~~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR-GSEVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC-GGGEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc-CCCCEEEEcchH
Confidence            35899999999999999994 667899988765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.05  E-value=0.045  Score=38.17  Aligned_cols=34  Identities=15%  Similarity=0.177  Sum_probs=28.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~   46 (290)
                      ...|+|+|+|+.|+.++..++.  +.+|+++|+++.
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            4569999999999999999875  557888988763

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.98  E-value=0.038  Score=37.76  Aligned_cols=35  Identities=29%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+.++|+|=|..|-.+|.+|+. |.+|+|.|.++.
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            36899999999999999999986 999999999873

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.88  E-value=0.031  Score=39.02  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..++++|+|+|-++-++++.|.. +.+++|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            45789999999999999999965 67899999875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.88  E-value=0.061  Score=37.60  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (290)
                      ..++|+|||+|-++-++++.|.+..++.|+.|+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDNNIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccccceeeehhhh
Confidence            4689999999999999999997744999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.077  Score=37.64  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=32.1

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL  174 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~  174 (290)
                      -+++.|+|+|..|..+|..+..  .|.+|+++++.+..+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~l   40 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTEDIL   40 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHh--CCCcEEEEECChHHH
Confidence            4899999999999999998886  599999999887543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=92.58  E-value=0.38  Score=32.19  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      +++.|||+|..|..+|..+..+....++.+++..+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            78999999999999999888765567888887654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.075  Score=38.28  Aligned_cols=32  Identities=22%  Similarity=0.443  Sum_probs=28.4

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      .++|||+|+.|+.+|..++.  .+.+|.++++..
T Consensus         4 DvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAM--YGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEeccC
Confidence            58999999999999999986  589999999753

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.49  E-value=0.084  Score=38.44  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      -.++|||+|+.|+.+|..+..  .+.+|.++++.+.+
T Consensus         7 yDviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~~~   41 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCS
T ss_pred             cCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCCC
Confidence            468999999999999999986  58999999977654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.052  Score=40.26  Aligned_cols=37  Identities=27%  Similarity=0.380  Sum_probs=31.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~~~   48 (290)
                      ...+|+|||+|-.|-.+|..|.+ | -+++++|.+..--
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~   67 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSL   67 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCG
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccch
Confidence            35899999999999999999987 7 4899999877543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=0.088  Score=38.25  Aligned_cols=36  Identities=31%  Similarity=0.468  Sum_probs=30.9

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      .-.++|||+|+.|+.+|..++.  .+.+|.++++.+.+
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~--~G~kV~lie~~~~~   40 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCc
Confidence            3579999999999999999996  58999999976653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.44  E-value=0.065  Score=38.79  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=29.6

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ..+++|||+|+.|+++|..++..  +.+|+++++..
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~~   38 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQA   38 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCC
Confidence            35799999999999999999974  89999999753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.44  E-value=0.049  Score=40.96  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +++|+|.|| |..|-.++.+|.. |++|+.+++++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            367999998 9999999999965 99999999875

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.42  E-value=0.06  Score=42.33  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=29.8

Q ss_pred             CCCcEEEEc-CChHHHHHHHHhc-cCCcEEEEcCCCC
Q 022896           12 KNKRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIG-aG~aGl~~A~~L~-~g~~v~vie~~~~   46 (290)
                      +.++|+|.| +|..|-.++.+|. +|++|+++|+...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            457799998 7999999999996 5999999987653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.11  E-value=0.075  Score=36.99  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=26.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcE-EEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADV-TLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v-~vie~~~   45 (290)
                      ...+|+|+|+|+.|+.++..++. |.++ ++.|+++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            35789999999999999988865 7655 5556644

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.075  Score=37.31  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (290)
                      ..++|+|||+|-+|-++++.|.+ | .+++|+.|+..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            35899999999999999999975 5 47999998754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.91  E-value=0.071  Score=37.76  Aligned_cols=35  Identities=34%  Similarity=0.312  Sum_probs=30.2

Q ss_pred             CCCcEEEEc-CChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIG-GGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIG-aG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+.++|.| +|-.|..+|..|.+ |.+|++++|+..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            468899999 58899999999975 999999999863

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.81  E-value=0.078  Score=35.97  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=27.7

Q ss_pred             CcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~   45 (290)
                      +++.+||+|--|-+.|..|.+ + +++.+++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            468999999999999998854 4 8999999976

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.80  E-value=0.088  Score=39.56  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      .++|||+|.+|+.+|..|+++  +.+|+++++.+.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~--G~~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            589999999999999999974  889999998653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.74  E-value=0.064  Score=37.88  Aligned_cols=37  Identities=14%  Similarity=0.164  Sum_probs=31.6

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      .-+++.|||+|..|..+|..+..  .+.+|+++++.+.-
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~~~   39 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINEHG   39 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCHHH
Confidence            45889999999999999988876  58999999987653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.72  E-value=0.1  Score=37.64  Aligned_cols=33  Identities=42%  Similarity=0.563  Sum_probs=28.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ..++|||+|+.|+++|..++.  .+.+|.++++..
T Consensus         4 ~DviVIG~GpaGl~aA~~aar--~G~kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCEEEEEecCC
Confidence            468999999999999998886  589999998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.37  E-value=0.35  Score=31.59  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      +++|+|.|..|..++..|.+  .+.+|.+++..+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH--CCCCcceecCCh
Confidence            68999999999999999987  488999998765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.54  Score=31.49  Aligned_cols=55  Identities=13%  Similarity=0.187  Sum_probs=40.7

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE  200 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~  200 (290)
                      ..+++|+|.|..|..++..|...  +.++.++...+        +-.....+.+...|+.++.+.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~--------~~~~~~~~~~~~~~~~vi~Gd   57 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQR--GQNVTVISNLP--------EDDIKQLEQRLGDNADVIPGD   57 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC--------HHHHHHHHHHHCTTCEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEeccc--------hhHHHHHHHhhcCCcEEEEcc
Confidence            45799999999999999999873  78888888654        333344445556688877653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.30  E-value=0.1  Score=36.53  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+.+.|||.|..|-..|..|+. |.+|..+|+...
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccc
Confidence            46789999999999999999987 999999998653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.27  E-value=0.099  Score=36.36  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (290)
                      ...|+|+|+|..|++++..++. + .+|++++.++.
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            4569999999999999999975 5 68888888764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.25  E-value=0.11  Score=39.64  Aligned_cols=33  Identities=30%  Similarity=0.585  Sum_probs=28.1

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      +|+|||+|..|+.+|..|+++ ...+|+++++.+
T Consensus         3 dViIIGaGi~G~s~A~~La~~-G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTR-GWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCCcEEEEeCCC
Confidence            699999999999999999874 335799999874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.09  E-value=0.089  Score=36.48  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=27.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~   45 (290)
                      ....|+|+|+|+.|+.++..++. | .+|++.|+++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            35779999999999999988864 6 4677778765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.05  E-value=1.1  Score=29.60  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=30.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      +.++.|||.|..|..+|..+..+....++.+++..+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            468999999999999999888766667888888654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.97  E-value=0.83  Score=30.13  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ++.|||+|..|..+|..+.......++.+++..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            6899999999999999888766667888888664

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=90.75  E-value=0.42  Score=32.46  Aligned_cols=37  Identities=24%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ...++.|||.|..|..+|..+.....-.++.+++..+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3579999999999999999998865667888888654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.63  E-value=0.15  Score=36.79  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=29.4

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      .-.++|||+|+.|+.+|..++..  +.+|.++++..
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~--G~~V~viE~~~   36 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYK   36 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCB
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccc
Confidence            34699999999999999999974  88999998754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.61  E-value=0.68  Score=31.93  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=27.9

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      .+++++|+|+|.++-.++..|..   ..+++++.|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~---~~~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAK---DNNIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTS---SSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc---ccceeeehhhh
Confidence            67999999999998888888864   34899888865

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.58  E-value=0.18  Score=34.47  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=27.3

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ++.|||.|..|..+|..|.+  .+.+|+.+++.+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHH--CCCEEEEEECCc
Confidence            58999999999999999986  488998887654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=90.51  E-value=0.11  Score=34.74  Aligned_cols=30  Identities=23%  Similarity=0.485  Sum_probs=25.1

Q ss_pred             cEEEEc-CChHHHHHHHHhc-cC--CcEEEEcCC
Q 022896           15 RVVVIG-GGVAGSLVAKSLQ-FS--ADVTLIDPK   44 (290)
Q Consensus        15 dvvIIG-aG~aGl~~A~~L~-~g--~~v~vie~~   44 (290)
                      +|.||| +|..|-++|+.|. ++  -++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            799999 6999999999996 33  479999964

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.41  E-value=0.39  Score=32.99  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ..+++++|+|+|.++-.++..|.+.  +.+++++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSL--DCAVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhccc--ceEEEeccchH
Confidence            3579999999999999999888873  66899888765

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.40  E-value=0.16  Score=36.89  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc---------------------C-CcEEEEcCCCCcc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF---------------------S-ADVTLIDPKEYFE   48 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~---------------------g-~~v~vie~~~~~~   48 (290)
                      ...+|+|||+|-.++=+|+.|.+                     + .+|+++.|+....
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~   96 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQ   96 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGG
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHh
Confidence            36899999999999999999865                     3 5789998877543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.35  E-value=0.11  Score=36.33  Aligned_cols=37  Identities=14%  Similarity=0.425  Sum_probs=30.5

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      .+++++|+|+|.++-.++..+... ...+++++.|.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccchH
Confidence            568999999999998888888874 5668999998764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.23  E-value=0.11  Score=36.08  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=25.9

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhcc----C----CcEEEEcCCC
Q 022896           12 KNKRVVVIGG-GVAGSLVAKSLQF----S----ADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGa-G~aGl~~A~~L~~----g----~~v~vie~~~   45 (290)
                      ...+|.|+|| |..|.++|+.|+.    |    ..+.++|...
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~   65 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER   65 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence            3568999996 9999999999964    2    2566667654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=90.12  E-value=0.18  Score=35.06  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=29.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      +++.|+|+|..|.-+|..|..  .+.+|+++.+.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCH
Confidence            789999999999999999997  489999998765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.01  E-value=0.19  Score=36.48  Aligned_cols=34  Identities=32%  Similarity=0.464  Sum_probs=29.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      -.++|||+|+.|+.+|..++.  .+.+|.+++..+.
T Consensus         4 YDviVIG~GpaGl~aA~~aa~--~G~kV~viE~~~~   37 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG--GCCCEEEECCCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence            368999999999999999986  5999999996553

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.85  E-value=1.3  Score=27.01  Aligned_cols=78  Identities=12%  Similarity=0.099  Sum_probs=52.5

Q ss_pred             hcCCeEEEEcCchhHHHH-HHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce
Q 022896          134 KSARSILIVGGGPTGVEL-AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD  212 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~-a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~  212 (290)
                      ...+++-++|-|-+|+.. |..|.++  +.+|+--+....       .    ..+.+++.|+++..+.....+.      
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~-------~----~~~~L~~~Gi~v~~g~~~~~i~------   66 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADG-------V----VTQRLAQAGAKIYIGHAEEHIE------   66 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCS-------H----HHHHHHHTTCEEEESCCGGGGT------
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCC-------h----hhhHHHHCCCeEEECCccccCC------
Confidence            457899999987777664 8888874  888887665432       2    2345667899988766542221      


Q ss_pred             eEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896          213 TYLTSTGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       213 ~v~~~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                                ..|.||.+++...+.+.+
T Consensus        67 ----------~~d~vV~S~AI~~~npel   84 (96)
T d1p3da1          67 ----------GASVVVVSSAIKDDNPEL   84 (96)
T ss_dssp             ----------TCSEEEECTTSCTTCHHH
T ss_pred             ----------CCCEEEECCCcCCCCHHH
Confidence                      248899988876644433

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=89.83  E-value=0.29  Score=32.55  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      ++.|+|+|..|..++..+.......++.+++..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            68999999999999998887655578999887664

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.79  E-value=0.16  Score=38.76  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=70.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------------------------C
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------------------I  177 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------------------~  177 (290)
                      -.|+|||+|.+|+.+|..+++  .+.+|.++++.+.....                                       .
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~--~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~   94 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN   94 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc
Confidence            479999999999999999997  48899999976532100                                       0


Q ss_pred             C-------------------------------------------------hhHHHHHHHHHHhCCcEEEeCceEeecccC
Q 022896          178 G-------------------------------------------------PKAGDKTRDWLISKKVDVKLGERVNLDSVS  208 (290)
Q Consensus       178 ~-------------------------------------------------~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~  208 (290)
                      +                                                 ..+...+.+.+++.|++++.++.++++..+
T Consensus        95 d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~  174 (308)
T d1y0pa2          95 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKD  174 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC
T ss_pred             chHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhh
Confidence            0                                                 123334556677789999999999887665


Q ss_pred             CCc--eeEE--cCCCc--EEeccEEEEccC-CCCCchh
Q 022896          209 EGS--DTYL--TSTGD--TINADCHFLCTG-KPVGSDW  239 (290)
Q Consensus       209 ~~~--~~v~--~~~g~--~~~~d~vv~a~G-~~~~~~~  239 (290)
                      +++  ..+.  ..++.  .+.++.||+||| +..+.++
T Consensus       175 ~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~  212 (308)
T d1y0pa2         175 DKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNER  212 (308)
T ss_dssp             TTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHH
T ss_pred             cccccccccccccccceeEeecCeEEEccCcccccHHH
Confidence            543  2333  23332  688999999998 4444443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.77  E-value=0.17  Score=36.48  Aligned_cols=35  Identities=34%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhcc-C-CcEEEEcCCC
Q 022896           11 GKNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (290)
Q Consensus        11 ~~~~dvvIIGaG~aGl~~A~~L~~-g-~~v~vie~~~   45 (290)
                      -.+.++++.|||.+|+..|..|.+ + .++.++|+..
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            346899999999999999999965 3 5788898864

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.63  E-value=0.18  Score=35.96  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..++|+|-|.|-.|..+|.+|.+ |.+|++.|.+.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            45889999999999999999976 99999999764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.52  E-value=0.17  Score=36.01  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.+.|||.|-.|-.+|..|+. |.+|..+|+..
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCcc
Confidence            4789999999999999999986 99999999854

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.28  E-value=0.59  Score=31.68  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=29.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      .++.|+|.|..|..+|..+.......++.+++..+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            57999999999999999988765566888887654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.25  E-value=0.19  Score=39.09  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCCC
Q 022896           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (290)
                      .++.|+|+|| |..|-+++.+|. +|++|.++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4688999997 999999999995 599999998865

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=89.02  E-value=0.81  Score=35.29  Aligned_cols=91  Identities=15%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCcee
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT  213 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~  213 (290)
                      ..+++.|||+|..+..-+..+...++-.+|.++.+.+        +-...+.+.+++ .|+++.....+.+.-...+-+.
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~--------~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~  198 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDP--------LATAKLIANLKEYSGLTIRRASSVAEAVKGVDIIT  198 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSH--------HHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEE
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecCh--------HHHHHHHHhhhhccCCCceecCCHHHHHhcCCcee
Confidence            4689999999999988777777666667888887764        455566666655 4888765544433222222222


Q ss_pred             EEcCCC--------cEEeccEEEEccCC
Q 022896          214 YLTSTG--------DTINADCHFLCTGK  233 (290)
Q Consensus       214 v~~~~g--------~~~~~d~vv~a~G~  233 (290)
                      ..+.+.        +.++-...|.+.|.
T Consensus       199 t~Tas~s~~Pv~~~~~l~pG~hI~aiGs  226 (340)
T d1x7da_         199 TVTADKAYATIITPDMLEPGMHLNAVGG  226 (340)
T ss_dssp             ECCCCSSEEEEECGGGCCTTCEEEECSC
T ss_pred             eccccCCCCcccchhhcCCCCEEeeccc
Confidence            122221        23445667777775

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=89.01  E-value=0.19  Score=32.92  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=29.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      |+++|+|.|..|..++..|..  .+.++.+++..+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH--TTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCeEEEecCcH
Confidence            678999999999999999997  488999998765

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.01  E-value=0.46  Score=31.71  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=28.1

Q ss_pred             eEEEEcC-chhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          138 SILIVGG-GPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       138 ~v~iiG~-g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      ++.|+|+ |..|..+|..+..+..-.++.++...+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            6899995 9999999999887544568898887643

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.81  E-value=0.1  Score=35.54  Aligned_cols=22  Identities=27%  Similarity=0.301  Sum_probs=19.7

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF   34 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~   34 (290)
                      ..+|.|||| |..|-++|+.|..
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~   26 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAA   26 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh
Confidence            469999997 9999999999964

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=88.81  E-value=0.2  Score=34.62  Aligned_cols=34  Identities=29%  Similarity=0.324  Sum_probs=25.7

Q ss_pred             CCcEEEEcCChHHHHHHHH--h-c-c---CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKS--L-Q-F---SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~--L-~-~---g~~v~vie~~~~   46 (290)
                      ..++.|||||-.|.+.+..  | . +   +.++.++|.++.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            4799999999999876542  2 2 2   468999999764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=88.70  E-value=0.26  Score=36.51  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=30.4

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ..++|||+|+.|+++|..+..  .+.+++++++.+.+
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~--~G~kv~vve~~~~l   77 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFL   77 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcc
Confidence            369999999999999999987  48899999987654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=88.69  E-value=0.2  Score=38.42  Aligned_cols=94  Identities=21%  Similarity=0.238  Sum_probs=67.8

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------C-
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------I-  177 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~-  177 (290)
                      -.|+|||+|.+|+.+|..+++  .+.+|.++++.+.....                                      . 
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~--~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~  101 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN  101 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHT--TTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             ceEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhcccccc
Confidence            479999999999999999987  48899999976431100                                      0 


Q ss_pred             -------------------------------------------------ChhHHHHHHHHHHhCCcEEEeCceEeecccC
Q 022896          178 -------------------------------------------------GPKAGDKTRDWLISKKVDVKLGERVNLDSVS  208 (290)
Q Consensus       178 -------------------------------------------------~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~  208 (290)
                                                                       ...+...+.+.+.+.|++++.++.++++..+
T Consensus       102 d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d  181 (322)
T d1d4ca2         102 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILED  181 (322)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECC
T ss_pred             CHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccccccc
Confidence                                                             0123444666777889999999999988765


Q ss_pred             CCc--eeE--EcCCCc--EEeccEEEEccC
Q 022896          209 EGS--DTY--LTSTGD--TINADCHFLCTG  232 (290)
Q Consensus       209 ~~~--~~v--~~~~g~--~~~~d~vv~a~G  232 (290)
                      +++  ..+  ...+++  .+.++.||+|+|
T Consensus       182 ~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG  211 (322)
T d1d4ca2         182 ASGKVTGVLVKGEYTGYYVIKADAVVIAAG  211 (322)
T ss_dssp             SSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred             ccccccceEEEeecccEEEEeCCeEEEcCC
Confidence            443  223  333332  589999999998

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=88.59  E-value=0.22  Score=35.33  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.|.|||-|-.|-.+|..|+. |.+|..+|+..
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            5889999999999999999986 99999999754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=88.52  E-value=0.27  Score=38.28  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=30.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      -.++|||+|..|+-+|..|++  .+.+|.+++++..
T Consensus         5 yDviIVGsG~aG~v~A~~La~--~G~kVlvLEaG~~   38 (379)
T d2f5va1           5 YDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGEI   38 (379)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred             ccEEEECcCHHHHHHHHHHhh--CCCeEEEEecCCC
Confidence            368999999999999999998  5899999998643

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=88.50  E-value=0.28  Score=38.31  Aligned_cols=32  Identities=13%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      .|+|||+|..|.-+|..|.+  .+.+|.+++++.
T Consensus         4 ~VIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHH--CcCeEEEEecCC
Confidence            58999999999999999997  589999999864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.19  Score=40.35  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~   46 (290)
                      ..+|+|||+|-.|..+|..|.. |. +++|+|.+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            4789999999999999999987 75 8999998774

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.38  E-value=0.18  Score=34.69  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=27.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc-C-CcEEEEcCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF-S-ADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~-g-~~v~vie~~~   45 (290)
                      ..+|+|+|+ |+.|+.++..++. | .+|+++++++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            467999995 9999999988864 6 6899999875

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.30  E-value=0.32  Score=34.13  Aligned_cols=35  Identities=17%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ....+.|||.|-.|...|..|+. |.+|..+|+...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            36899999999999999999987 999999998653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.25  E-value=0.31  Score=34.41  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+.+.|||.|-.|-.+|..|+. |.+|..+|+...
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CceEEEeccccccccceeeeeccccceeeccCccc
Confidence            5789999999999999999987 999999998543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.06  E-value=0.27  Score=37.63  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      -.|+|||+|.+|+.+|..+.++  +.+|.++++.+.
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~~   53 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPF   53 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            4599999999999999999975  889999997654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=87.74  E-value=0.16  Score=39.79  Aligned_cols=57  Identities=23%  Similarity=0.202  Sum_probs=39.9

Q ss_pred             HHHHHHHhCCcEEEeCceEeecccCCCc---eeEE--cCCC-----cEEeccEEEEccCCCCCchhh
Q 022896          184 KTRDWLISKKVDVKLGERVNLDSVSEGS---DTYL--TSTG-----DTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       184 ~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~--~~~g-----~~~~~d~vv~a~G~~~~~~~l  240 (290)
                      .+....+..+++++.++.|++|..++++   +.+.  ...+     +++.|+.||+|+|.-..+.+|
T Consensus       228 ~L~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LL  294 (370)
T d3coxa1         228 YLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  294 (370)
T ss_dssp             HHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHH
Confidence            3455556667999999999999987765   2332  2222     258899999999975445555

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.64  E-value=0.25  Score=37.99  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      .|+|||+|.+|+.+|..+++  .+.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~--~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHT--TTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence            59999999999999999986  488999998754

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.52  E-value=0.37  Score=34.62  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=28.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc--------------------c-C-CcEEEEcCCCCc
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ--------------------F-S-ADVTLIDPKEYF   47 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~--------------------~-g-~~v~vie~~~~~   47 (290)
                      ...+|+|||+|-.++=+|+.|.                    + + .+|+++-|+...
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            3589999999999999998774                    2 3 468888887653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=87.33  E-value=0.44  Score=32.27  Aligned_cols=33  Identities=15%  Similarity=0.158  Sum_probs=29.5

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      |++|+|+|..|.-++..|.+  .+.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHH--CCCceEEEEcCHH
Confidence            68999999999999999987  5899999998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.23  Score=34.32  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=27.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...|+|+|| |+.|+.+...++. |.+|+++++++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeccccccccccccccccCcccccccccc
Confidence            467999996 9999988877764 99999988754

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=87.27  E-value=0.34  Score=35.78  Aligned_cols=31  Identities=35%  Similarity=0.622  Sum_probs=27.9

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG  170 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~  170 (290)
                      .++|||+|+.|+.+|..+++  .+.+|.++++.
T Consensus         3 DviVIG~G~aG~~aA~~aa~--~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAAR--HNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHH--CCCeEEEEecC
Confidence            58999999999999999997  58999999975

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.20  E-value=0.09  Score=35.78  Aligned_cols=34  Identities=26%  Similarity=0.244  Sum_probs=25.9

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc-C-------CcEEEEcCCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF-S-------ADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~-g-------~~v~vie~~~~   46 (290)
                      ..+|.|||| |..|.++|+.|.. +       ....++|.++.
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~   45 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM   45 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc
Confidence            469999996 9999999999863 1       24667776543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.62  E-value=0.19  Score=37.38  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=28.0

Q ss_pred             CCCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+.++|.||+- .|.++|..|.+ |++|++.+++..
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            356788888765 58888888865 999999999774

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.47  E-value=0.47  Score=34.34  Aligned_cols=33  Identities=36%  Similarity=0.555  Sum_probs=26.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhC-CCCeEEEEecC
Q 022896          138 SILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKG  170 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~-~~~~v~~~~~~  170 (290)
                      +++|||+|+.|+.+|...+... .+.+|.++++.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            7999999999999998766532 34678999974

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.45  E-value=0.34  Score=33.32  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=26.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (290)
                      ...|+|+|+|..|+.++..++. |. +|++.++++
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            4679999999999999888875 75 566666654

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=86.43  E-value=0.42  Score=36.45  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=30.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      -.|+|||+|..|+.+|..+.+...+.+|.++++..
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            46999999999999999998766688999998764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.18  E-value=0.35  Score=36.02  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=28.0

Q ss_pred             CCcEEEEcC-C--hHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGG-G--VAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGa-G--~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+.++|.|| |  =.|.++|..|.+ |++|++.++++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999996 3  259999999975 999999999764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.06  E-value=0.41  Score=33.54  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ....+.|||.|..|-.+|..|.. |.+|..+|+..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            46889999999999999999976 99999999854

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.00  E-value=0.81  Score=31.36  Aligned_cols=36  Identities=14%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ..+++++|+|+|.++-.++..|.+  ...+++++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~--~~~~i~I~nR~~   51 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRTF   51 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc--cCceeeeccchH
Confidence            367899999999999888888875  467899998875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.76  E-value=0.24  Score=34.15  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ...|+|.|| |+.|+.+...++. |.+|+.+++++
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            466888896 9999998877764 99999988765

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.19  E-value=0.57  Score=32.66  Aligned_cols=34  Identities=38%  Similarity=0.400  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ..+.+.|||.|..|-..|..|+. |.+|..+|+..
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             cceeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            35889999999999999999987 99999999854

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=85.19  E-value=0.37  Score=37.28  Aligned_cols=34  Identities=32%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             CCcEEEEc-CChHHHHHHHHhc-cCCcEEEEcCCCC
Q 022896           13 NKRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIG-aG~aGl~~A~~L~-~g~~v~vie~~~~   46 (290)
                      .++|+|.| +|..|..++..|. +|++|..+++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            48999999 6899999999996 5999999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.79  E-value=0.52  Score=34.27  Aligned_cols=34  Identities=32%  Similarity=0.341  Sum_probs=27.5

Q ss_pred             CCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+.++|.||+- .|.++|..|.+ |++|.++++.+.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47899999854 68899999975 999999987653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.70  E-value=2.6  Score=25.10  Aligned_cols=74  Identities=12%  Similarity=0.032  Sum_probs=48.1

Q ss_pred             eEEEEcCchhHHH-HHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc
Q 022896          138 SILIVGGGPTGVE-LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT  216 (290)
Q Consensus       138 ~v~iiG~g~~~~~-~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~  216 (290)
                      |+=++|-|-+|+. +|..|.+  .+.+|+--+..+.       .    ..+.|++.|+++..+.....            
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~--~G~~VsGSD~~~~-------~----~t~~L~~~Gi~i~~gh~~~~------------   57 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFS--NGNDVYGSNIEET-------E----RTAYLRKLGIPIFVPHSADN------------   57 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH--TTCEEEEECSSCC-------H----HHHHHHHTTCCEESSCCTTS------------
T ss_pred             EEEEEeECHHHHHHHHHHHHh--CCCeEEEEeCCCC-------h----hHHHHHHCCCeEEeeecccc------------
Confidence            5667886666664 5777776  4888887665432       2    33458899999886543211            


Q ss_pred             CCCcEEeccEEEEccCCCCCchhh
Q 022896          217 STGDTINADCHFLCTGKPVGSDWL  240 (290)
Q Consensus       217 ~~g~~~~~d~vv~a~G~~~~~~~l  240 (290)
                          ...+|.||+.+..+...+.+
T Consensus        58 ----i~~~d~vV~SsAI~~~npel   77 (89)
T d1j6ua1          58 ----WYDPDLVIKTPAVRDDNPEI   77 (89)
T ss_dssp             ----CCCCSEEEECTTCCTTCHHH
T ss_pred             ----cCCCCEEEEecCcCCCCHHH
Confidence                12478999998877654444

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=84.30  E-value=2.6  Score=27.91  Aligned_cols=33  Identities=18%  Similarity=0.523  Sum_probs=26.2

Q ss_pred             eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ++.+||.|..|..++..|.+. ...++.+..|.+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~-~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCCcEEEEeCCh
Confidence            588999999999999987764 347888777664

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=84.29  E-value=0.36  Score=35.81  Aligned_cols=33  Identities=24%  Similarity=0.192  Sum_probs=26.5

Q ss_pred             CCcEEEEcC-Ch--HHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGG-GV--AGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGa-G~--aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.++|.|| |-  .|.++|..|++ |++|++.+++.
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            478999995 44  58888999965 99999998765

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.26  E-value=0.31  Score=33.27  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=24.2

Q ss_pred             CcEEEEcCChHHHHHHHHh--c--c---CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGVAGSLVAKSL--Q--F---SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~A~~L--~--~---g~~v~vie~~~~   46 (290)
                      ++++|||||-.|.+.+...  +  .   ..++.++|.++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~   40 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEE   40 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcH
Confidence            4699999998887777543  1  1   468999998653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.22  E-value=0.46  Score=34.78  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=26.3

Q ss_pred             CCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.++|-||+- .|.++|..|.+ |++|.+.++++
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46677778754 68888999865 99999999875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.11  E-value=0.65  Score=27.94  Aligned_cols=32  Identities=22%  Similarity=0.101  Sum_probs=26.2

Q ss_pred             CcEEEEcCChHHHHH-HHHhc-cCCcEEEEcCCC
Q 022896           14 KRVVVIGGGVAGSLV-AKSLQ-FSADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGaG~aGl~~-A~~L~-~g~~v~vie~~~   45 (290)
                      +++-+||-|=+|+++ |..|+ +|++|+--|...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            578899999999977 56665 499999999864

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.90  E-value=0.96  Score=29.91  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=26.9

Q ss_pred             eEEEEc-CchhHHHHHHHHhhhCCCCeEEEEec
Q 022896          138 SILIVG-GGPTGVELAGEIAVDFPEKKVTLVHK  169 (290)
Q Consensus       138 ~v~iiG-~g~~~~~~a~~l~~~~~~~~v~~~~~  169 (290)
                      ++.|+| +|..|..+|..+..+....++.+++.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            789999 69999999999987655667888774

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.68  E-value=1.4  Score=30.62  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             cCCeEEEEc-CchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          135 SARSILIVG-GGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       135 ~~~~v~iiG-~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      .+|+++|.| ++..|..++..+..+  +.+|.++.|...
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccchH
Confidence            689999999 578999999999874  889999998763

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.19  E-value=1.2  Score=27.93  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      ..++.|+|+|..|..++....+  .+.++.++++.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~--lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQR--LGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHT--TTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHH--CCCEEEEEcCCCC
Confidence            4689999999999999988775  6999999997755

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=83.14  E-value=0.78  Score=32.13  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+.+.|||.|-.|-..|..|+. |.++..+|+...
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             ccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            5889999999999999999986 999999998654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.06  E-value=0.88  Score=26.54  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=28.6

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      |++.|+|+|.-|..++..-..  .+.++.++.+.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~--LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEP--LGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGG--GTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHH--cCCEEEEEcCCCC
Confidence            579999999999998887775  5999999987654

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=82.99  E-value=0.39  Score=36.17  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=28.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhc----c-C-------CcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQ----F-S-------ADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~----~-g-------~~v~vie~~~~   46 (290)
                      .+.+++|.|||.+|+.+|..|.    + |       .++.++|+...
T Consensus        24 ~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          24 SDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            3578999999999999998874    1 3       48999998764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=82.99  E-value=2.2  Score=31.68  Aligned_cols=58  Identities=12%  Similarity=0.105  Sum_probs=39.4

Q ss_pred             cCCeEEEEcC-chhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896          135 SARSILIVGG-GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  198 (290)
Q Consensus       135 ~~~~v~iiG~-g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  198 (290)
                      ..++|+|.|+ |..|..++..|.++  +.+|+.+.|.+...   . .........+...+++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~~~---~-~~~~~~~~~~~~~~v~~v~   60 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEVVS---N-IDKVQMLLYFKQLGAKLIE   60 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCCSS---C-HHHHHHHHHHHTTTCEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCCccc---c-hhHHHHHhhhccCCcEEEE
Confidence            3567999995 89999999999874  78999988865421   1 1122233445566777654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.83  E-value=2.2  Score=27.40  Aligned_cols=37  Identities=27%  Similarity=0.487  Sum_probs=28.0

Q ss_pred             cCCeEEEEcCch-----------hHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896          135 SARSILIVGGGP-----------TGVELAGEIAVDFPEKKVTLVHKGSRL  173 (290)
Q Consensus       135 ~~~~v~iiG~g~-----------~~~~~a~~l~~~~~~~~v~~~~~~~~~  173 (290)
                      ..++++|+|+|+           ++.+++..|++.  +.++.++...+..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~--g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREE--GYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH--TCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc--CCeEEEecCchHh
Confidence            458999999875           567777778764  8888888876653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.82  E-value=0.42  Score=35.61  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=27.9

Q ss_pred             CCCCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCCC
Q 022896           11 GKNKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        11 ~~~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      -..+.++|.||+- .|.++|..|.+ |++|++.+|+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3457788888876 48888888865 99999999976

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=0.39  Score=36.90  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      -.|+|||+|..|+.+|..+.++  +.+|.++++.+
T Consensus         8 ~DVlVVG~G~AGl~AAl~aa~~--G~~V~lleK~~   40 (330)
T d1neka2           8 FDAVVIGAGGAGMRAALQISQS--GQTCALLSKVF   40 (330)
T ss_dssp             ESCEEECCSHHHHHHHHHHHHT--TCCCEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHc--CCeEEEEeCCC
Confidence            3689999999999999999874  78899998654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.74  E-value=0.51  Score=34.65  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=22.8

Q ss_pred             EEEEcCC-hHHHHHHHHhcc-CCcEEEEcCCC
Q 022896           16 VVVIGGG-VAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        16 vvIIGaG-~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++|-||+ -.|.++|.+|.+ |++|.++++++
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4555653 358888888875 99999999865

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.57  E-value=0.4  Score=34.50  Aligned_cols=31  Identities=29%  Similarity=0.335  Sum_probs=25.2

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhc-cCCcEEEEc
Q 022896           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLID   42 (290)
Q Consensus        12 ~~~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie   42 (290)
                      ++.+|+|.|| |..|..++..|. +|+++.+++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            3678999995 999999999996 488766654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=82.30  E-value=0.49  Score=36.39  Aligned_cols=32  Identities=38%  Similarity=0.478  Sum_probs=27.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCCC
Q 022896           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (290)
Q Consensus        14 ~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (290)
                      ++|+|+|| |..|-.++.+|. +|++|+++|+-.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            46899986 889999999996 599999998744

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.30  E-value=0.44  Score=35.92  Aligned_cols=37  Identities=27%  Similarity=0.176  Sum_probs=29.4

Q ss_pred             ccCCCCcEEEEcCC---hHHHHHHHHhcc-CCcEEEEcCCC
Q 022896            9 SEGKNKRVVVIGGG---VAGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus         9 ~~~~~~dvvIIGaG---~aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      +.-..+.++|-||+   -.|.++|..|++ |++|++.++++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            33446889999975   369999999975 99999998754

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.27  Score=37.03  Aligned_cols=35  Identities=14%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-----C-------CcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-----S-------ADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-----g-------~~v~vie~~~~   46 (290)
                      .+.+++|.|||.+|+.+|..|..     |       .++.++|+...
T Consensus        24 ~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          24 SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            35789999999999999988742     3       36999998653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.17  E-value=0.57  Score=34.53  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=24.0

Q ss_pred             CcE-EEEcCCh-HHHHHHHHhcc-CCcEEEEcCCC
Q 022896           14 KRV-VVIGGGV-AGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        14 ~dv-vIIGaG~-aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      ++| +|-||+- .|.++|..|.+ |++|.+.++++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456 5557654 58888888865 99999999865

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.03  E-value=0.52  Score=34.70  Aligned_cols=34  Identities=29%  Similarity=0.331  Sum_probs=27.1

Q ss_pred             CCcEEEEcCC---hHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGG---VAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG---~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+.++|.||+   =.|.++|.+|.+ |++|.+.++++.
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            4778899863   259999999975 999999888654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=81.95  E-value=1.2  Score=29.44  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=29.2

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR  172 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~  172 (290)
                      +++.|||+|..|..+|..+.......++.+++..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            579999999999999999887656678999987664

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=81.84  E-value=0.35  Score=36.62  Aligned_cols=35  Identities=17%  Similarity=0.344  Sum_probs=28.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhcc-----C-------CcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKSLQF-----S-------ADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~L~~-----g-------~~v~vie~~~~   46 (290)
                      .+.+++|.|||.||+.+|..|..     |       .++.++|+...
T Consensus        24 ~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          24 SQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             HHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            35789999999999999988741     3       36999998654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.78  E-value=0.57  Score=35.59  Aligned_cols=32  Identities=34%  Similarity=0.600  Sum_probs=27.2

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCC
Q 022896           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPK   44 (290)
Q Consensus        13 ~~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~   44 (290)
                      +++|+|.|| |..|-.++.+|. +|++|+.+|+.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            368999986 789999999995 59999999863

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.75  E-value=0.65  Score=33.60  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=25.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGG-GVAGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGa-G~aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      +.++|-|| +-.|.++|..|.+ |++|++.++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            45666676 3458888888875 999999998764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.58  E-value=0.61  Score=35.37  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=28.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHhc-cCCcEEEEcCCCC
Q 022896           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (290)
                      ++|+|.|| |..|-.++.+|. +|++|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            47899987 899999999995 5999999998764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.56  E-value=0.46  Score=34.64  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=27.2

Q ss_pred             CCCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      ..+.++|-||+- .|.++|..|.+ |++|.+.++++.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            356777777764 58888888865 999999999764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.44  E-value=4.1  Score=28.85  Aligned_cols=87  Identities=21%  Similarity=0.175  Sum_probs=49.5

Q ss_pred             HhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce
Q 022896          133 IKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD  212 (290)
Q Consensus       133 ~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~  212 (290)
                      +.++.+|+.||+| +|+..|. |+.. .+.+|+.++..+        .+.....+.+++.|+.   +..+  +..+.   
T Consensus        76 l~~g~~VLeIGsG-sGY~tai-la~l-~g~~V~~ie~~~--------~l~~~a~~~l~~~g~~---nv~~--~~gd~---  136 (215)
T d1jg1a_          76 LKPGMNILEVGTG-SGWNAAL-ISEI-VKTDVYTIERIP--------ELVEFAKRNLERAGVK---NVHV--ILGDG---  136 (215)
T ss_dssp             CCTTCCEEEECCT-TSHHHHH-HHHH-HCSCEEEEESCH--------HHHHHHHHHHHHTTCC---SEEE--EESCG---
T ss_pred             cCccceEEEecCC-CChhHHH-HHHh-hCceeEEEeccH--------HHHHHHHHHHHHcCCc---eeEE--EECcc---
Confidence            4578999999976 3444442 2221 255688777664        6777777788877642   2121  11111   


Q ss_pred             eEEcCCC--cEEeccEEEEccCCCCCc-hhhcc
Q 022896          213 TYLTSTG--DTINADCHFLCTGKPVGS-DWLKD  242 (290)
Q Consensus       213 ~v~~~~g--~~~~~d~vv~a~G~~~~~-~~l~~  242 (290)
                          .+|  ..-++|.+++..+...-+ .++++
T Consensus       137 ----~~g~~~~~pfD~Iiv~~a~~~ip~~l~~q  165 (215)
T d1jg1a_         137 ----SKGFPPKAPYDVIIVTAGAPKIPEPLIEQ  165 (215)
T ss_dssp             ----GGCCGGGCCEEEEEECSBBSSCCHHHHHT
T ss_pred             ----ccCCcccCcceeEEeecccccCCHHHHHh
Confidence                011  235689999877765333 34444

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.29  E-value=0.47  Score=34.46  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=25.6

Q ss_pred             CcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           14 KRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        14 ~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      -+|+|.||+- .|.+.|..|.+ |++|.++++++.
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4689998764 37777788864 999999998764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=80.98  E-value=1.5  Score=29.55  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=29.7

Q ss_pred             cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      ..++++|+|.|..|..++..|..+ ...+++++.|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcH
Confidence            578999999999999999999875 334788887763

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=80.95  E-value=2.6  Score=29.00  Aligned_cols=40  Identities=18%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHhcc--CCcEEEEcCCCCcccc
Q 022896           11 GKNKRVVVIGG-GVAGSLVAKSLQF--SADVTLIDPKEYFEIT   50 (290)
Q Consensus        11 ~~~~dvvIIGa-G~aGl~~A~~L~~--g~~v~vie~~~~~~~~   50 (290)
                      .++.+|.|||| |.+|....+-|.+  ..++..+-.+...|..
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~   45 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQ   45 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCc
Confidence            34689999997 9999999999964  6777777666555544

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=80.89  E-value=0.55  Score=34.53  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             CCcEEEEcCCh---HHHHHHHHhcc-CCcEEEEcCCCC
Q 022896           13 NKRVVVIGGGV---AGSLVAKSLQF-SADVTLIDPKEY   46 (290)
Q Consensus        13 ~~dvvIIGaG~---aGl~~A~~L~~-g~~v~vie~~~~   46 (290)
                      .+.++|.||+-   .|.++|..|.+ |++|++.++++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            47788888753   47888889865 999999999865

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=80.72  E-value=0.73  Score=34.03  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=26.1

Q ss_pred             CCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.++|.||+- .|.++|..|.+ |++|.+.++++
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46778888754 57888888865 99999999865

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.70  E-value=0.76  Score=33.54  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=26.4

Q ss_pred             CCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCCC
Q 022896           13 NKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPKE   45 (290)
Q Consensus        13 ~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~~   45 (290)
                      .+.++|.||+- .|.++|..|.+ |++|++.++++
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47788888754 58888888865 99999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=80.66  E-value=0.6  Score=32.67  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      +++.|+|+|..|.-+|..|.+  .+.+|+++.|.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~--~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSK--KCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT--TEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHH--cCCeEEEEEecH
Confidence            589999999999999999986  477899988764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.49  E-value=2  Score=27.55  Aligned_cols=47  Identities=15%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeC
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG  199 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~  199 (290)
                      |.++|+|.|..|.+++..|.    +.++.++...+.        ..    +.+...|+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~----~~~i~vi~~d~~--------~~----~~~~~~~~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR----GSEVFVLAEDEN--------VR----KKVLRSGANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC----GGGEEEEESCTT--------HH----HHHHHTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHc----CCCCEEEEcchH--------HH----HHHHhcCcccccc
Confidence            57899999999999999886    446777765543        21    2345678877755

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=80.33  E-value=1.7  Score=31.31  Aligned_cols=119  Identities=13%  Similarity=0.118  Sum_probs=67.5

Q ss_pred             HHHHHHHHhcCCeEEEEcC--chhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEe
Q 022896          126 YQAENQKIKSARSILIVGG--GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN  203 (290)
Q Consensus       126 ~~~~~~~~~~~~~v~iiG~--g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~  203 (290)
                      +...+-.....++++-+|.  |++++-+|..+..   +.+++-++..+        +.....++.+++.|..    ..|+
T Consensus        50 ~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~---~g~v~tie~~~--------~~~~~A~~~~~~~g~~----~~i~  114 (227)
T d1susa1          50 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPE---DGKILAMDINK--------ENYELGLPVIKKAGVD----HKID  114 (227)
T ss_dssp             HHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCT---TCEEEEEESCC--------HHHHHHHHHHHHTTCG----GGEE
T ss_pred             HHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCC---CcEEEEEeccc--------hhHHHHHHHHHHhccc----ccee
Confidence            3334444567899999995  6778888877753   66888888765        5566667777776652    2222


Q ss_pred             ecccCCCcee-EEcCCC-cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCc
Q 022896          204 LDSVSEGSDT-YLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL  261 (290)
Q Consensus       204 ~i~~~~~~~~-v~~~~g-~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~  261 (290)
                      -+..+....- -...++ ..-.+|+|++-.-.......++.. .+ -+.+.|.+.+|+-+
T Consensus       115 ~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~-~~-ll~~gGiii~DNvl  172 (227)
T d1susa1         115 FREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRL-ID-LVKVGGVIGYDNTL  172 (227)
T ss_dssp             EEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHH-HH-HBCTTCCEEEETTT
T ss_pred             eeehHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHH-Hh-hcCCCcEEEEccCC
Confidence            1111111000 000111 123589999976554333444432 22 35678888888754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.29  E-value=1.3  Score=30.05  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=27.9

Q ss_pred             CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896          137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS  171 (290)
Q Consensus       137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~  171 (290)
                      +++.|||.|..|..+|..|.+.....+|+.+++.+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            57999999999999999998754455777766553

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.09  E-value=0.45  Score=32.60  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=23.8

Q ss_pred             CCCcEEEEcCChHHHHHHHH--hcc-----CCcEEEEcCCCC
Q 022896           12 KNKRVVVIGGGVAGSLVAKS--LQF-----SADVTLIDPKEY   46 (290)
Q Consensus        12 ~~~dvvIIGaG~aGl~~A~~--L~~-----g~~v~vie~~~~   46 (290)
                      +.++++|||||..|...+..  |.+     +.++.++|-++.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~   43 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKE   43 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChh
Confidence            35899999999876543322  222     248999998764