Citrus Sinensis ID: 022897

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHccccccccEEEcccccccccccccHHHHcccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHccccccccccccHHHHcccccccEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEEccccccccccccHHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHcccccccEEEcccEcccccccccccccc
Coil and Loop (DISEMBL)
MHGYKGCLETERTALLEIKSFFisvgdigyddkilpswvgeddgmpsdccddwegvkcnatTRRVMQLSLTYTERLNYYDRTSASLlnmslfhpfeelqslnlsdnwfrgfyenkaydsfgslkqlkILDLGcnffndsilpylNTLTSLTTLILYsnsiegsgtmqGLANLRYLQVLDlswnenitsgsltrlglanltnlkeldlrgcgittsqgladlpnlktldlrdcgiTTIQGLAKLKnlealdlswnningslesqgladlpnlkildlrdcgmttiqgkifk
Flexible Loop (DISEMBL)
mhgykgclETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITtsqgladlpnlktldlRDCGITTIQGLAKLKNLEALDLSWNNINGSLesqgladlpnlKILDLRDCGMTTIQGKIFK
Low Complexity Region (SEG)
MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPylntltslttlilysnsiEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK
Disordered region (IsUnstruct)
*****GCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG****
Disordered Region (DISOPRED)
****KGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTS***LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF*
Disordered Region (DISEMBL)
MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK
Disordered Region (DISPRO)
**GYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q0WR59	1048	Probable inactive recepto	no	no	0.855	0.236	0.303	8e-13
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.848	0.243	0.275	1e-09
Q8YA32	1778	Internalin-I OS=Listeria	yes	no	0.431	0.070	0.377	2e-09
Q723X5	1775	Internalin-I OS=Listeria	yes	no	0.644	0.105	0.311	3e-09
Q9C9N5	685	Probable inactive leucine	no	no	0.734	0.310	0.304	1e-08
Q15435	360	Protein phosphatase 1 reg	yes	no	0.582	0.469	0.331	1e-08
Q5RFS7	360	Protein phosphatase 1 reg	yes	no	0.582	0.469	0.326	1e-08
Q9LP24	1120	Probable leucine-rich rep	no	no	0.858	0.222	0.305	1e-08
Q6DIQ3	346	Protein phosphatase 1 reg	yes	no	0.541	0.453	0.319	2e-08
Q9LRT1	1016	Probably inactive leucine	no	no	0.758	0.216	0.319	2e-08

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 122/290 (42%), Gaps = 42/290 (14%)

Query: 2   HGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGM-PSDCCDDWEGVKCNA 60
           HG     ETE  +LLE +     + D     +I  SW        PS C +DW G+ C+ 
Sbjct: 17  HGANAVTETELRSLLEFRK---GIRDETSHQRI--SWSDTSSLTDPSTCPNDWPGISCDP 71

Query: 61  TTRRVMQLSLTYTERLNYYDRTSAS-LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDS 119
            T  ++ ++L         DR   S  L  S       L++L+LS N F G    +   S
Sbjct: 72  ETGSIIAINL---------DRRGLSGELKFSTLSGLTRLRNLSLSGNSFSG----RVVPS 118

Query: 120 FGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLD 179
            G +  L+ LDL  N F   I   ++ L SL  L L SN  EG G   G  NL+ L+ LD
Sbjct: 119 LGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEG-GFPSGFRNLQQLRSLD 177

Query: 180 LSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLP---------NLKTLDLR 230
           L  NE    G +  +     T LK ++          G   LP          L+ L+L 
Sbjct: 178 LHKNE--IWGDVGEI----FTELKNVEFVDLSCNRFNGGLSLPMENISSISNTLRHLNLS 231

Query: 231 DCGIT----TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
              +     + + +   KNLE +DL  N ING L   G    P+L+IL L
Sbjct: 232 HNALNGKFFSEESIGSFKNLEIVDLENNQINGELPHFG--SQPSLRILKL 279

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 135/327 (41%), Gaps = 81/327 (24%)

Query: 2   HGYKGCLETERTALLEIKSFFISVGDIGYDDKI-LPSWVGEDDGMPSDCCDDWEGVKCNA 60
           HG+    ET+R ALL+ KS       +  D ++ L SW   +   P   C+ W+GV C  
Sbjct: 18  HGFTD--ETDRQALLQFKS------QVSEDKRVVLSSW---NHSFP--LCN-WKGVTCGR 63

Query: 61  TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSF 120
             +RV  L L    RL      S S+ N+S       L SL+L +N+F G    +     
Sbjct: 64  KNKRVTHLELG---RLQLGGVISPSIGNLSF------LVSLDLYENFFGGTIPQEV---- 110

Query: 121 GSLKQLKILDLGCNFFN------------------------DSILPYLNTLTSLTTLILY 156
           G L +L+ LD+G N+                           S+   L +LT+L  L LY
Sbjct: 111 GQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLY 170

Query: 157 SNSIEGSGTMQGLANLRYLQVLDLS------------------WNENITSGSLTRLGLAN 198
            N++ G      L NL  L+ L LS                  W+  + + + + +    
Sbjct: 171 GNNMRGK-LPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPA 229

Query: 199 LTNLKELDLRGCGITTSQGLAD------LPNLKTLDLRDCGIT--TIQGLAKLKNLEALD 250
           L NL  L L G G     G         LPNL + ++     T      L+ +  LE L 
Sbjct: 230 LYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLG 289

Query: 251 LSWNNINGSLESQGLADLPNLKILDLR 277
           ++ NN+ GS+ + G  ++PNLK+L L 
Sbjct: 290 MNENNLTGSIPTFG--NVPNLKLLFLH 314

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlI PE=4 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 10/135 (7%)

Query: 123 LKQLKILDL-GCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLS 181
           L +L+++ L GC+   +  +  L  L +L  +   S +IE  GT+    NL  LQ L LS
Sbjct: 343 LSELEMIQLSGCSKLKE--ITSLKNLPNLVNITADSCAIEDLGTLN---NLPKLQTLVLS 397

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLA 241
            NEN+T+ +     + +L  LK L L GCGIT+   L +LP L+ LDL++  IT+I  + 
Sbjct: 398 DNENLTNIT----AITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITSISEIT 453

Query: 242 KLKNLEALDLSWNNI 256
            L  L  LD+S NN+
Sbjct: 454 DLPRLSYLDVSVNNL 468

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 103/231 (44%), Gaps = 44/231 (19%)

Query: 82  TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD----LGCNFFN 137
           ++ +L+N+S       LQ LN+S         NKA +    +  L +L      GCN   
Sbjct: 210 SNRTLVNLSGVEGLVNLQELNVS--------ANKALEDISQVAALPVLKEISAQGCNIKT 261

Query: 138 -------DSILPYL-------NTLTSLTTLI----LYSNSIEGSGTMQGLANLRYLQVLD 179
                   +ILP L       N LT LT+L     L +  I+G+ +++ LA L+    L 
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTDLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQ 321

Query: 180 LSWNENITSGSLTRLG-LANLTNLKELDLRGCG-ITTSQGLADLPNLKTLDLRDCGITTI 237
           L    N T   L  LG ++ L+ L+ + L GC  +     L DLPNL  +    C I  +
Sbjct: 322 LIDASNCTD--LETLGDISGLSELEMIQLSGCSKLKEITSLKDLPNLVNITADSCAIEDL 379

Query: 238 QGLAKLKNLEALDLSWN----NINGSLESQGLADLPNLKILDLRDCGMTTI 284
             L  L  L+ L LS N    NIN       + D+P LK L L  CG+T+I
Sbjct: 380 GTLNNLPKLQTLILSDNKDLTNINA------ITDMPQLKTLALDGCGITSI 424

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 111/276 (40%), Gaps = 63/276 (22%)

Query: 32  DKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRV-MQL--------------SLTYTERL 76
           D +  +W   D    S+ C  W+GV CN   R V ++L              SL     +
Sbjct: 41  DSVFTNWNSSD----SNPCS-WQGVTCNYDMRVVSIRLPNKRLSGSLDPSIGSLLSLRHI 95

Query: 77  NYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFF 136
           N  D      L + LF   + LQSL LS N F GF      +  GSLK L  LDL  N F
Sbjct: 96  NLRDNDFQGKLPVELFG-LKGLQSLVLSGNSFSGFVP----EEIGSLKSLMTLDLSENSF 150

Query: 137 NDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGL 196
           N SI   L     L TL+L  NS  G       +NL +L+ L+LS+N             
Sbjct: 151 NGSISLSLIPCKKLKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLSFNR------------ 198

Query: 197 ANLTNLKELDLRGCGITTSQGLADLPNLK-TLDLRDCGITTI--QGLAKLKNLEALDLSW 253
                     L G   T  + +  L NLK TLDL     + +    L  L  L  +DLS+
Sbjct: 199 ----------LTG---TIPEDVGSLENLKGTLDLSHNFFSGMIPTSLGNLPELLYVDLSY 245

Query: 254 NNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           NN++G         +P   +  L + G    QG  F
Sbjct: 246 NNLSGP--------IPKFNV--LLNAGPNAFQGNPF 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q15435|PP1R7_HUMAN Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 95/199 (47%), Gaps = 30/199 (15%)

Query: 95  FEELQSLNLSDNWFRGFYEN--KAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTT 152
            EELQSL   D      Y+N  K  ++  +L +L+ILD+  N   +  +  ++ LT L  
Sbjct: 116 LEELQSLRELD-----LYDNQIKKIENLEALTELEILDISFNLLRN--IEGVDKLTRLKK 168

Query: 153 LILYSNSIEGSGTMQGLANLRYLQVLDLSWN-----ENITSGSLTRLGLANLTNLKELDL 207
           L L +N I     ++ L+NL  LQ+L+L  N     ENI +          LTNL+ L L
Sbjct: 169 LFLVNNKI---SKIENLSNLHQLQMLELGSNRIRAIENIDT----------LTNLESLFL 215

Query: 208 RGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD 267
               IT  Q L  L NL  L ++   +T I+GL  L NL  L LS N I      +GL +
Sbjct: 216 GKNKITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEV---IEGLEN 272

Query: 268 LPNLKILDLRDCGMTTIQG 286
              L +LD+    +  I+ 
Sbjct: 273 NNKLTMLDIASNRIKKIEN 291

Regulatory subunit of protein phosphatase 1.

Homo sapiens (taxid: 9606)

>sp|Q5RFS7|PP1R7_PONAB Protein phosphatase 1 regulatory subunit 7 OS=Pongo abelii GN=PPP1R7 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 30/199 (15%)

Query: 95  FEELQSLNLSDNWFRGFYEN--KAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTT 152
            EELQSL   D      Y+N  K  ++  +L +L+ILD+  N   +  +  ++ +T L  
Sbjct: 116 LEELQSLRELD-----LYDNQIKKIENLEALTELEILDISFNLLRN--IEGVDKVTQLKK 168

Query: 153 LILYSNSIEGSGTMQGLANLRYLQVLDLSWN-----ENITSGSLTRLGLANLTNLKELDL 207
           L L +N I     ++ L+NL  LQ+L+L  N     ENI +          LTNL+ L L
Sbjct: 169 LFLVNNKI---SKIENLSNLHQLQMLELGSNRIRAIENIDT----------LTNLESLFL 215

Query: 208 RGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD 267
               IT  Q L  L NL  L ++   +T I+GL  L NL+ L LS N I      +GL +
Sbjct: 216 GKNKITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLQELYLSHNGIEV---IEGLEN 272

Query: 268 LPNLKILDLRDCGMTTIQG 286
              L +LD+    +  I+ 
Sbjct: 273 NNKLTMLDIASNRIKKIEN 291

Regulatory subunit of protein phosphatase 1.

Pongo abelii (taxid: 9601)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 129/288 (44%), Gaps = 39/288 (13%)

Query: 10  TERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLS 69
            E  ALL+ KS F        +   L SWV + +   S  C  W GV CN+    + +L+
Sbjct: 32  AEANALLKWKSTFT-------NSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGS-IEELN 83

Query: 70  LTYT--------------ERLNYYDRTSASLLNMSLFHPFEELQSL---NLSDNWFRGFY 112
           LT T                L Y D  S +LL+ ++   F  L  L   +LS N   G  
Sbjct: 84  LTNTGIEGTFQDFPFISLSNLAYVD-LSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTG-- 140

Query: 113 ENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL 172
             +   S G+LK L +L L  N+    I   L  + S+T L L  N + GS     L NL
Sbjct: 141 --EISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGS-IPSSLGNL 197

Query: 173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS--QGLADLPNLKTLDLR 230
           + L VL L   EN  +G +    L N+ ++ +L L    +T S    L +L NL  L L 
Sbjct: 198 KNLMVLYLY--ENYLTGVIPP-ELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLY 254

Query: 231 DCGITTI--QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
           +  +T +    +  ++++  L LS N + GS+ S  L +L NL +L L
Sbjct: 255 ENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSS-LGNLKNLTLLSL 301

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6DIQ3|PP1R7_XENTR Protein phosphatase 1 regulatory subunit 7 OS=Xenopus tropicalis GN=ppp1r7 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 15/172 (8%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           L+ +L    E L+SL+     +    +    ++FG+L QL++L+LG N     ++  L++
Sbjct: 135 LSFNLLRRIEGLESLSHLQRLYLVNNKISRIENFGTLTQLRLLELGSNRL--RVIENLDS 192

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKEL 205
           L  L +L L  N I     ++ L NL  L V          S  LT++ GL NL NL+EL
Sbjct: 193 LRELDSLFLGKNKITKLQNLETLTNLTVLSV---------QSNRLTKIEGLQNLVNLREL 243

Query: 206 DLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNIN 257
            L   GI   +GL +   L TLDL    I  I+ +  L  L+     W N N
Sbjct: 244 YLSDNGIQVIEGLENNNKLTTLDLASNRIKRIENIKHLSELQEF---WMNDN 292

Regulatory subunit of protein phosphatase 1.

Xenopus tropicalis (taxid: 8364)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 108/247 (43%), Gaps = 27/247 (10%)

Query: 35  LPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHP 94
           L SW  EDD  P  C   W  VKCN  T RV++LSL         +R    L        
Sbjct: 54  LESWT-EDDNTP--CS--WSYVKCNPKTSRVIELSLDGLALTGKINRGIQKL-------- 100

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
            + L+ L+LS+N F G       ++  +   L+ LDL  N  +  I   L ++TSL  L 
Sbjct: 101 -QRLKVLSLSNNNFTG-----NINALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLD 154

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWN--ENITSGSLTRLGLANLTNLKELDLRGCGI 212
           L  NS  G+ +     N   L+ L LS N  E     +L R  + N  NL      G   
Sbjct: 155 LTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSVLNSLNLSRNRFSGNPS 214

Query: 213 TTSQGLADLPNLKTLDLRDCGI--TTIQGLAKLKNLEALDLSWNNINGSLESQ-GLADLP 269
             S G+  L  L+ LDL    +  +   G+  L NL+ L L  N  +G+L S  GL   P
Sbjct: 215 FVS-GIWRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRNQFSGALPSDIGLC--P 271

Query: 270 NLKILDL 276
           +L  +DL
Sbjct: 272 HLNRVDL 278

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
297745031	869	unnamed protein product [Vitis vinifera]	0.944	0.315	0.393	4e-40
240254535	935	receptor like protein 21 [Arabidopsis th	0.9	0.279	0.405	5e-40
359483099	1231	PREDICTED: probable LRR receptor-like se	0.917	0.216	0.411	2e-39
240256417	908	receptor like protein 56 [Arabidopsis th	0.906	0.289	0.412	9e-39
10177158	888	disease resistance protein-like [Arabido	0.906	0.296	0.412	3e-38
297821945	910	leucine-rich repeat family protein [Arab	0.851	0.271	0.415	3e-38
297745128	938	unnamed protein product [Vitis vinifera]	0.893	0.276	0.415	3e-37
4432858	910	putative disease resistance protein [Ara	0.848	0.270	0.408	2e-36
240254367	976	receptor like protein 14 [Arabidopsis th	0.837	0.248	0.390	1e-35
12321378	1784	hypothetical protein [Arabidopsis thalia	0.875	0.142	0.401	1e-34

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 172/300 (57%), Gaps = 26/300 (8%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
           +HGYK CLE ER  LLE K F  S  +    D++LPSWV +++   SDCC  WE V CN+
Sbjct: 19  IHGYKCCLEKERMGLLEFKRFLRSNNEDA--DRLLPSWVNDEE---SDCCY-WERVVCNS 72

Query: 61  TTRRVMQLSLTYTERLNYYDRT-------SASLLNMSLFHPFEELQSLNLSDNWFRGFYE 113
           TT  V QLSL    ++ +Y R            LN+SLFHPFEEL SL+LS+NWF    E
Sbjct: 73  TTGTVTQLSLNNIRQIEFYHRVYGLAPPKKTWFLNVSLFHPFEELVSLDLSENWFADSLE 132

Query: 114 NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR 173
           ++ ++    LK+L++L++G N+FN+SI P +  LTSL  LIL    +EGS   +      
Sbjct: 133 DQGFEKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEGSYLDR--VPFN 190

Query: 174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLR 230
            L+VLDLS   N  +GS+    + NLT+L+ L L    +T     +G   L NL+ LDL 
Sbjct: 191 NLEVLDLS--NNRFTGSIPPY-IWNLTSLQALSLADNQLTGPLPVEGFCKLKNLQELDLS 247

Query: 231 DCGITTI--QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288
              +  +    L+ +++L+ LDLS N   G + S  +++L +L+ LDL   G   ++G++
Sbjct: 248 GNSLDGMFPPCLSNMRSLKLLDLSLNQFTGKIPSSLISNLTSLEYLDL---GSNRLEGRL 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254535|ref|NP_180117.4| receptor like protein 21 [Arabidopsis thaliana] gi|330252611|gb|AEC07705.1| receptor like protein 21 [Arabidopsis thaliana]

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/286 (40%), Positives = 164/286 (57%), Gaps = 25/286 (8%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
           +HG   C+E ER ALLE+K + +S       D +LP+W  +     SDCC  W+G+KCN 
Sbjct: 7   LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIKCNR 62

Query: 61  TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD---NWFRGFYEN-KA 116
           T+ RV++LS+       Y+  +S   LN+SL HPFEE++SLNLS    N F GF+++ + 
Sbjct: 63  TSGRVIELSVGDM----YFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEG 116

Query: 117 YDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176
           Y S   L+ LKI+DL  N+FN S  P+LN  TSLTTLIL  N ++G   ++GL +L  L+
Sbjct: 117 YRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLE 176

Query: 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDC---- 232
           +LDL  N+   +GS+    L +L  LK LDL     ++S  L +L NL  L++       
Sbjct: 177 LLDLRANK--LNGSMQE--LIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNH 232

Query: 233 --GITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
             G   I+   KLKNL  LDL  N+  G +    L  L  L++LDL
Sbjct: 233 VDGPIPIEVFCKLKNLRDLDLKGNHFVGQI-PLCLGSLKKLRVLDL 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/311 (41%), Positives = 170/311 (54%), Gaps = 45/311 (14%)

Query: 3   GYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATT 62
           G KGC+E E+  LLE K+F + + D G+ D +LPSW+   D   SDCC+ WE V CN TT
Sbjct: 22  GCKGCIEEEKMGLLEFKAF-LKLND-GHADFLLPSWI---DNNISDCCN-WERVICNPTT 75

Query: 63  RRVMQLSLTYTERLN--------YYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN 114
            RV +LSL    +          YY+     LLN+SLF PFEEL  LNLS N F GF EN
Sbjct: 76  GRVKKLSLNDIRQQQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIEN 135

Query: 115 KAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY 174
           + +    SLK+L+ILD+  N F+ S L  L  +TSL TL + S  ++GS  +Q LA+ R 
Sbjct: 136 EGFKGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIRSMGLDGSFPIQELASSRN 195

Query: 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS--QGLADLPNLKTLDLRDC 232
           L+VLDLS+N+ + S  L + GL +L  L+ L + G     S  + L  + +LKTL L   
Sbjct: 196 LEVLDLSYND-LESFQLVQ-GLLSLKKLEILAISGNEFDKSVIKSLGAITSLKTLVLCRI 253

Query: 233 GIT---TIQGLAKLKNLEALDLSWNN------------------------INGSLESQGL 265
           G+     IQ  A L NLE LDLS+N+                        +NGSL +QG 
Sbjct: 254 GLNGSFPIQDFASLSNLEILDLSYNSFSGILPSSIRLMSSLKSLSLAGNQLNGSLPNQGF 313

Query: 266 ADLPNLKILDL 276
             L  L+ LDL
Sbjct: 314 CQLNKLQELDL 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/286 (41%), Positives = 163/286 (56%), Gaps = 23/286 (8%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
           +HG+  C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE +KCN 
Sbjct: 7   LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIKCNR 62

Query: 61  TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN-KAYDS 119
           T+RR+  LSL YT   +YY     SLLN+SL HPFEE++SL+LS++   G  ++ + Y S
Sbjct: 63  TSRRLTGLSL-YT---SYY--LEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKS 116

Query: 120 FGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLD 179
              L+ L+IL+   N FN+SI P+LN  TSLTTL L  N++ G   ++ L NL  L++LD
Sbjct: 117 LRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLD 176

Query: 180 LSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGITT 236
           LS N     GS+       L  LK LDL   GI +S   Q   ++ NL+ LDLR  GI  
Sbjct: 177 LSGNR--IDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLR--GINF 232

Query: 237 IQGLA----KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
           +  L      L  L  LDLS N + G++     + L +L+ L L D
Sbjct: 233 VGQLPLCFGNLNKLRFLDLSSNQLTGNIPP-SFSSLESLEYLSLSD 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/286 (41%), Positives = 163/286 (56%), Gaps = 23/286 (8%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
           +HG+  C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE +KCN 
Sbjct: 7   LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIKCNR 62

Query: 61  TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN-KAYDS 119
           T+RR+  LSL YT    YY     SLLN+SL HPFEE++SL+LS++   G  ++ + Y S
Sbjct: 63  TSRRLTGLSL-YTS---YY--LEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKS 116

Query: 120 FGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLD 179
              L+ L+IL+   N FN+SI P+LN  TSLTTL L  N++ G   ++ L NL  L++LD
Sbjct: 117 LRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLD 176

Query: 180 LSWNENITSGSLTRLGLANLTNLKELDL---RGCGITTSQGLADLPNLKTLDLRDCGITT 236
           LS N     GS+   GL NLTNL+ L L      G    +   ++ NL+ LDLR  GI  
Sbjct: 177 LSGNR--IDGSMPVRGLKNLTNLEVLSLGYNYFDGPIPIEVFCEMKNLQELDLR--GINF 232

Query: 237 IQGLA----KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
           +  L      L  L  LDLS N + G++     + L +L+ L L D
Sbjct: 233 VGQLPLCFGNLNKLRFLDLSSNQLTGNIPP-SFSSLESLEYLSLSD 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/272 (41%), Positives = 158/272 (58%), Gaps = 25/272 (9%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
           +HG KGC+  ER ALLE+K + +S       D +LP+W  +     SDCC  W+G+KCN 
Sbjct: 7   LHGCKGCIMKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIKCNR 62

Query: 61  TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD---NWFRGFYEN-KA 116
           T+RRV+ LS+       Y+  +S   LN+SL HPFEE++SLNLS    N F GF+++ + 
Sbjct: 63  TSRRVIGLSVGDM----YFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEG 116

Query: 117 YDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176
           Y S   L+ L+I+DL  N+FN SI P+LN  TSLTT+ L  N ++G   ++GL +L  L+
Sbjct: 117 YRSLSRLRNLQIMDLSTNYFNYSIFPFLNAATSLTTIFLTYNEMDGPFPIKGLKDLTNLE 176

Query: 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGC---GITTSQGLADLPNLKTLDLRD-- 231
           +LDL  N+    GS+    L NL NL+ L L      G    +   ++ NL+ LDLR   
Sbjct: 177 LLDLRANK--LKGSMQE--LKNLINLEVLGLAQNHVDGPIPIEVFCNIKNLRELDLRGNH 232

Query: 232 -CGITTIQGLAKLKNLEALDLSWNNINGSLES 262
             G   I  L +LK L  LDLS N ++G L S
Sbjct: 233 FVGQLPI-CLGRLKKLRVLDLSSNQLSGILPS 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745128|emb|CBI38967.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/289 (41%), Positives = 159/289 (55%), Gaps = 30/289 (10%)

Query: 6   GCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRV 65
           GC E E+  LLE K+F     +    D +LPSW+G +    S+CC  WE V C+ TT RV
Sbjct: 33  GCNEEEKMGLLEFKAFLKLNNEKA--DLLLPSWIGNNI---SECCS-WERVICDPTTSRV 86

Query: 66  MQLSLTYTERLNY---------YDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKA 116
            +LSL    +            Y+     LLN SLF PFEELQ LNLS N F GF +N+ 
Sbjct: 87  KKLSLNNIRQQQILLEDYGWSNYENDKFWLLNTSLFLPFEELQDLNLSANSFDGFIKNEG 146

Query: 117 YDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176
           + S  SLK+L+ILD+  N F+ S++  L+T+TSL TL+L S  +EGS  +Q LA+LR L+
Sbjct: 147 FKSLSSLKKLEILDISGNEFDKSVIKSLSTITSLKTLVLCSIGLEGSFPVQELASLRSLE 206

Query: 177 VLDLSWN------ENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLR 230
            LDLS+N      +   S SL+ L      NL +   R    TT Q L    +LK+L L+
Sbjct: 207 ALDLSYNNLESFQQVQDSKSLSILKKLETLNLNQNKFRN---TTMQQLNTFASLKSLSLQ 263

Query: 231 DC---GITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
                G   IQ L  L+NL  LDLS N++ G    QG   LP LK L++
Sbjct: 264 SNYLEGFFPIQELHALENLVMLDLSLNHLTG---MQGFKSLPKLKKLEI 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/269 (40%), Positives = 153/269 (56%), Gaps = 23/269 (8%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
           +HG   C+E ER ALLE+K + +S       D +LP+W  +     SDCC  W+G+KCN 
Sbjct: 7   LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIKCNR 62

Query: 61  TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD---NWFRGFYEN-KA 116
           T+ RV++LS+       Y+  +S   LN+SL HPFEE++SLNLS    N F GF+++ + 
Sbjct: 63  TSGRVIELSVGDM----YFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEG 116

Query: 117 YDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176
           Y S   L+ LKI+DL  N+FN S  P+LN  TSLTTLIL  N ++G   ++GL +L  L+
Sbjct: 117 YRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLE 176

Query: 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGC---GITTSQGLADLPNLKTLDLRDCG 233
           +LDL  N+   +GS+    L NL NL+ L L      G    +    L NL+ LDL+   
Sbjct: 177 LLDLRANK--LNGSMQE--LQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNH 232

Query: 234 IT--TIQGLAKLKNLEALDLSWNNINGSL 260
                   L  LK L  LDLS N ++G L
Sbjct: 233 FVGQIPLCLGSLKKLRVLDLSSNQLSGDL 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254367|ref|NP_177558.4| receptor like protein 14 [Arabidopsis thaliana] gi|332197442|gb|AEE35563.1| receptor like protein 14 [Arabidopsis thaliana]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/282 (39%), Positives = 161/282 (57%), Gaps = 39/282 (13%)

Query: 1   MHGYKGCLETERTALLEIKSFFIS-VGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCN 59
           + GYK C+E ER ALLE+K + IS   D G D  +LP+W  +     S+CC  WEG+KCN
Sbjct: 21  LRGYKCCIEKERKALLELKKYMISKTADWGLD-SVLPTWTNDTK---SNCCR-WEGLKCN 75

Query: 60  ATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD---NWFRGFYEN-K 115
            T+ R+++LS+  T   N+ + +  +   +SL HPFEEL+SLNLS    N F G +++ +
Sbjct: 76  QTSGRIIELSIGQT---NFKESSLLN---LSLLHPFEELRSLNLSGEIYNEFNGLFDDVE 129

Query: 116 AYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175
            Y+S   L+ L+ILDL  N FN+SI P+LN  TSLTTL + SN I G   ++ L NL  L
Sbjct: 130 GYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKELKNLTKL 189

Query: 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGIT 235
           ++LDLS   +  +GS+      +L  LK LDL     ++                   + 
Sbjct: 190 ELLDLS--RSGYNGSIPE--FTHLEKLKALDLSANDFSS-------------------LV 226

Query: 236 TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277
            +Q L  L NLE L L+WN+++G +  +   ++ NL+ LDLR
Sbjct: 227 ELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLR 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321378|gb|AAG50756.1|AC079131_1 hypothetical protein [Arabidopsis thaliana]

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/284 (40%), Positives = 163/284 (57%), Gaps = 30/284 (10%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
           M GY  C+E ER  LLE+K++     +  YD      W  +     SDCC  WE V+C+ 
Sbjct: 22  MQGYISCIEKERKGLLELKAYVNK--EYSYD------WSNDTK---SDCCR-WERVECDR 69

Query: 61  TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN-KAYDS 119
           T+ RV+ L L  T        +   L+N+SLFHPFEEL++LNL D    G++++   Y S
Sbjct: 70  TSGRVIGLFLNQT-------FSDPILINLSLFHPFEELRTLNLYDFGCTGWFDDIHGYKS 122

Query: 120 FGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLD 179
            G LK+L+ILD+G N  N+S+LP+LN  +SL TLIL+ N++EG+  M+ L +L  L++LD
Sbjct: 123 LGKLKKLEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNMEGTFPMKELKDLSNLELLD 182

Query: 180 LSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGIT- 235
           LS   N+ +G +   GLA L  L  LDL     + S   +GL  L NL+ LDL     T 
Sbjct: 183 LS--GNLLNGPVP--GLAVLHKLHALDLSDNTFSGSLGREGLCQLKNLQELDLSQNEFTG 238

Query: 236 -TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
              Q  + L  L+ LD+S N  NG+L S  +++L +L+ L L D
Sbjct: 239 PFPQCFSSLTQLQVLDMSSNQFNGTLPSV-ISNLDSLEYLSLSD 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.906	0.289	0.377	1.1e-35
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.9	0.279	0.367	1.6e-35
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.896	0.266	0.369	4.3e-34
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.893	0.268	0.355	2.8e-32
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.896	0.240	0.341	3.7e-27
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.782	0.254	0.363	1.1e-26
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.786	0.228	0.295	8.1e-15
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.893	0.290	0.283	1e-12
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.875	0.265	0.310	2.2e-12
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.855	0.283	0.297	1.8e-11

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 108/286 (37%), Positives = 150/286 (52%)

Query:     1 MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
             +HG+  C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  WE +KCN 
Sbjct:     7 LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIKCNR 62

Query:    61 TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN-KAYDS 119
             T+RR+  LSL YT   +YY     SLLN+SL HPFEE++SL+LS++   G  ++ + Y S
Sbjct:    63 TSRRLTGLSL-YT---SYY--LEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKS 116

Query:   120 FGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQGLANLRYLQVLD 179
                L+ L+IL+   N FN+SI P                   G   ++ L NL  L++LD
Sbjct:   117 LRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLD 176

Query:   180 LSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGITT 236
             LS N     GS+       L  LK LDL   GI +S   Q   ++ NL+ LDLR  GI  
Sbjct:   177 LSGNR--IDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLR--GINF 232

Query:   237 IQGL----AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
             +  L      L  L  LDLS N + G++     + L +L+ L L D
Sbjct:   233 VGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSD 277

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.6e-35, P = 1.6e-35
 Identities = 105/286 (36%), Positives = 151/286 (52%)

Query:     1 MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
             +HG   C+E ER ALLE+K + +S       D +LP+W  +     SDCC  W+G+KCN 
Sbjct:     7 LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIKCNR 62

Query:    61 TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD---NWFRGFYEN-KA 116
             T+ RV++LS+      + Y + S S LN+SL HPFEE++SLNLS    N F GF+++ + 
Sbjct:    63 TSGRVIELSVG-----DMYFKES-SPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEG 116

Query:   117 YDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQGLANLRYLQ 176
             Y S   L+ LKI+DL  N+FN S  P                  +G   ++GL +L  L+
Sbjct:   117 YRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLE 176

Query:   177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT 236
             +LDL  N+   +GS+  L   +L  LK LDL     ++S  L +L NL  L++       
Sbjct:   177 LLDLRANK--LNGSMQEL--IHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNH 232

Query:   237 IQG------LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
             + G        KLKNL  LDL  N+  G +    L  L  L++LDL
Sbjct:   233 VDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLRVLDL 277

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 4.3e-34, P = 4.3e-34
 Identities = 106/287 (36%), Positives = 152/287 (52%)

Query:     1 MHGYKGCLETERTALLEIKSFFIS-VGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCN 59
             + GYK C+E ER ALLE+K + IS   D G D  +LP+W  +     S+CC  WEG+KCN
Sbjct:    21 LRGYKCCIEKERKALLELKKYMISKTADWGLDS-VLPTWTNDTK---SNCCR-WEGLKCN 75

Query:    60 ATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD---NWFRGFYEN-K 115
              T+ R+++LS+  T   N+ +   +SLLN+SL HPFEEL+SLNLS    N F G +++ +
Sbjct:    76 QTSGRIIELSIGQT---NFKE---SSLLNLSLLHPFEELRSLNLSGEIYNEFNGLFDDVE 129

Query:   116 AYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQGLANLRYL 175
              Y+S   L+ L+ILDL  N FN+SI P                   G   ++ L NL  L
Sbjct:   130 GYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKELKNLTKL 189

Query:   176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGIT 235
             ++LDLS   +  +GS+      +L  LK LDL     ++   L +L  L  L++      
Sbjct:   190 ELLDLS--RSGYNGSIPEF--THLEKLKALDLSANDFSSLVELQELKVLTNLEVLGLAWN 245

Query:   236 TIQG------LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
              + G        ++KNL  LDL  N   G L    L +L  L++LDL
Sbjct:   246 HLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVC-LGNLNKLRVLDL 291

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.8e-32, P = 2.8e-32
 Identities = 101/284 (35%), Positives = 150/284 (52%)

Query:     1 MHGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA 60
             +HGYK C++ E+ AL E++   IS  +    + +LP+W  +     SDCC  W+GV CN 
Sbjct:    21 LHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDTT---SDCCR-WKGVACNR 73

Query:    61 TTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN-KAYDS 119
              + RV ++S      L+  D    SLLN+SL HPFE+++SLNLS +   G +++ + Y S
Sbjct:    74 VSGRVTEISFG---GLSLKDN---SLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKS 127

Query:   120 FGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQGLANLRYLQVLD 179
                L++L+ILDL  N FN+SI                    +GS   + L +L  L++LD
Sbjct:   128 LRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLD 187

Query:   180 LSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQ- 238
             LS N    +GS+    L++L  LK LDL G       G  +L      DL    + +IQ 
Sbjct:   188 LSRNR--FNGSIPIQELSSLRKLKALDLSG---NEFSGSMELQGKFCTDL----LFSIQS 238

Query:   239 GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT 282
             G+ +L N++ LDLS N + G L S  L  L  L++LDL    +T
Sbjct:   239 GICELNNMQELDLSQNKLVGHLPSC-LTSLTGLRVLDLSSNKLT 281

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 3.7e-27, P = 3.7e-27
 Identities = 96/281 (34%), Positives = 141/281 (50%)

Query:    15 LLEIKSFFISVGDIGYDDK----ILPSWVGEDDGMPSDCCDDWEGVKCN-ATTRRVMQLS 69
             LL++KS+  ++ D   +++    IL SW   +     DCC  WE VKC+ A    V+ LS
Sbjct:     3 LLQLKSYLKNLVDAEEEEEEGLSILKSWTHHE----GDCCR-WERVKCSDAINGHVIGLS 57

Query:    70 LTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN-KAYDSFGSLKQLKI 128
             L     + +  +T +  LN+SL H F +LQSLNLS NWF    ++   + SFG+L +L  
Sbjct:    58 LDRLVPVAFESQTRS--LNLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTLDKLTT 115

Query:   129 LDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQGLANLRYLQVLDLSWNENITS 188
             LD   N F++SI+P                  EG    Q L+N+  L+VL+L  N   + 
Sbjct:   116 LDFSHNMFDNSIVPFLNAATSIRSLHLESNYMEGVFPPQELSNMTNLRVLNLKDN---SF 172

Query:   189 GSLTRLGLANLTNLKELDLRGCGITTSQGLADLPN--LKTLDLRD---CGITTIQGLAKL 243
               L+  GL +  +L+ LDL   G+  S+    L    LKTLDL        + ++GL  L
Sbjct:   173 SFLSSQGLTDFRDLEVLDLSFNGVNDSEASHSLSTAKLKTLDLNFNPLSDFSQLKGLESL 232

Query:   244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
             + L+ L L  N  N +L +  L DL  L+ LDL D G T +
Sbjct:   233 QELQVLKLRGNKFNHTLSTHVLKDLKMLQELDLSDNGFTNL 273

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 88/242 (36%), Positives = 128/242 (52%)

Query:    45 MPSD--CCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLN 102
             M SD  CC  W  +KC+ T++RV+ +SL+  E +   D      LN++ F+PFEELQSLN
Sbjct:     1 MSSDRSCCH-WRRIKCDITSKRVIGISLSL-ESIRPPDPLPQ--LNLTFFYPFEELQSLN 56

Query:   103 LSDNWFRGFY-ENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXE 161
             LS  +F+G++ E K     GSL+ L+ LDLG NF++ S+LP                  +
Sbjct:    57 LSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFK 116

Query:   162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG---CGITTSQGL 218
             G   +Q L NL  L+VLDL +N+   SG L    L NL NL+ LDL      G    QG+
Sbjct:   117 GGFPVQELINLTSLEVLDLKFNK--FSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGI 174

Query:   219 ADLPNLKTLDL-RDCGITTIQ-GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
               L  L+ L L R+     I    ++   L  LDLS N+++G +    ++D  +++ L L
Sbjct:   175 CRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIP-YFISDFKSMEYLSL 233

Query:   277 RD 278
              D
Sbjct:   234 LD 235

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 75/254 (29%), Positives = 117/254 (46%)

Query:    55 GVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLS------DNWF 108
             GV+CN  + R+  ++      + +       LLN+SL HPFE+++SL+LS      D  F
Sbjct:     2 GVECNRKSGRITNIAFG----IGFIIENP--LLNLSLLHPFEDVRSLDLSSSRSCEDCGF 55

Query:   109 RGFYEN-KAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQ 167
              G +++ + Y S   L+ L+ILDL  + FN+SI P                       ++
Sbjct:    56 SGLFDDVEGYKSLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNMHSPFLVK 115

Query:   168 GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG--ITTSQ---GLADLP 222
                +L  L+ LDL  N    +GS+      +L   ++L++      +  S+    L    
Sbjct:   116 EFKDLTNLEHLDLRGNR--FNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSAT 173

Query:   223 NLKTLDL---RDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279
             +LK+L L      G    + L  L N+E LDLS N  NGS+  + L  L  LK LDL D 
Sbjct:   174 SLKSLSLWGNNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDN 233

Query:   280 GMTT---IQGKIFK 290
               ++   +QGK  K
Sbjct:   234 EFSSSVELQGKFAK 247

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 81/286 (28%), Positives = 129/286 (45%)

Query:     7 CLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVM 66
             CL  +R ALLE K+ F S+     D  ++     +     +DCC  W G+ C+  T  V+
Sbjct:    26 CLPDQRDALLEFKNEF-SIPSPDSDLMLILQTTAKWRNN-TDCCS-WGGISCDPKTGVVV 82

Query:    67 QLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQL 126
             +L L  ++ LN   R+++SL  +      + LQSL+LS N           DS G+ K L
Sbjct:    83 ELDLGNSD-LNGRLRSNSSLFRL------QHLQSLDLSYNDLSCTLP----DSSGNFKYL 131

Query:   127 KILDL-GCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGT-MQGLANLRYLQVLDLSWNE 184
             ++L+L GCN F +  +P                  + +G  +  + NL++L+VL L+ + 
Sbjct:   132 RVLNLLGCNLFGE--IPTSLRSLSYLTDLDLSYNDDLTGEILDSMGNLKHLRVLSLT-SC 188

Query:   185 NITSGSLTRLGLANLTNLKELDLRGCGITTS--QGLADLPNLKTLDLRDCGI--TTIQGL 240
               T    + LG  NLT L +LDL     T      + +L +L+ L+L  C         L
Sbjct:   189 KFTGKIPSSLG--NLTYLTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSL 246

Query:   241 AKLKNLEALDLSWNNIN--GSLESQGLADLPNLKILDLRDCGMTTI 284
               L NL  LD+S N     G      L  L + +++ L    +T +
Sbjct:   247 GSLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNV 292

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 86/277 (31%), Positives = 122/277 (44%)

Query:     7 CLETERTALLEIKSFFISVGDIGYDD-KI--LPSWVGEDD-GMPSDCCDDWEGVKCNATT 62
             C   +R ALL  K+ F  +G    D  KI  + S    D  G  SDCC+ WEGV CNA +
Sbjct:    37 CRPEQRDALLAFKNEF-EIGKPSPDHCKIYGIESPRKTDSWGNNSDCCN-WEGVTCNAKS 94

Query:    63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS 122
               V++L L+ +  L+    +++S+ N+   H F  L +L+LS N F+G    +   S  +
Sbjct:    95 GEVIELDLSCSS-LHGRFHSNSSIRNL---H-F--LTTLDLSFNDFKG----QITSSIEN 143

Query:   123 LKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQGLANLRYLQVLDLSW 182
             L  L  LDL  N F+  IL                    G      + NL +L  LDLS+
Sbjct:   144 LSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAP-SSICNLSHLTFLDLSY 202

Query:   183 NENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGIT-TIQG-L 240
             N        +  GL++LT L     +  G   S  + +L NL TLDL +   +  I   +
Sbjct:   203 NRFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSS-IGNLSNLTTLDLSNNNFSGQIPSFI 261

Query:   241 AKLKNLEALDLSWNNINGSLESQ--GLADLPNLKILD 275
               L  L  L L  NN  G + S    L  L  L + D
Sbjct:   262 GNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDD 298

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 83/279 (29%), Positives = 119/279 (42%)

Query:     7 CLETERTALLEIKSFF-ISVGDIGYDDKI-LPSWVGEDDGMPSDCCDDWEGVKCNATTRR 64
             C   +R ALLE K+ F I     G    +   SW   ++G  SDCC  W+G+ C+A T  
Sbjct:    30 CHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSW---ENG--SDCCH-WDGITCDAKTGE 83

Query:    65 VMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLK 124
             V+++ L  +    ++   S    N+S+   F  L +L+LS N   G    +   S G+L 
Sbjct:    84 VIEIDLMCSCLHGWFHSNS----NLSMLQNFHFLTTLDLSYNHLSG----QISSSIGNLS 135

Query:   125 QLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQGLANLRYLQVLDLSWNE 184
              L  LDL  N F+  I P                   G      L NL YL  LDLS N 
Sbjct:   136 HLTTLDLSGNNFSGWI-PSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNN 194

Query:   185 ---NITS--GSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGIT-TIQ 238
                 I S  GSL +L +  L N K   L G        + +L  L  + L     T T+ 
Sbjct:   195 FVGEIPSSFGSLNQLSILRLDNNK---LSG---NLPLEVINLTKLSEISLSHNQFTGTLP 248

Query:   239 -GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
               +  L  LE+   S NN  G++ S  L  +P++ ++ L
Sbjct:   249 PNITSLSILESFSASGNNFVGTIPSS-LFTIPSITLIFL 286

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-14
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-10
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	7e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	1e-06
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.4 bits (175), Expect = 7e-14
 Identities = 94/331 (28%), Positives = 132/331 (39%), Gaps = 75/331 (22%)

Query: 6   GCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTR-R 64
             L  E   LL   SF  S+ D     K L +W        +D C  W+G+ CN ++R  
Sbjct: 24  SMLHAEELELL--LSFKSSIND---PLKYLSNW-----NSSADVCL-WQGITCNNSSRVV 72

Query: 65  VMQLS--------------LTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWF-- 108
            + LS              L Y + +N  +   +  +   +F     L+ LNLS+N F  
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 109 ---RGFYEN-------------KAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTT 152
              RG   N             +  +  GS   LK+LDLG N     I   L  LTSL  
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 153 LILYSNSIEGS-----GTMQGL------------------ANLRYLQVLDLSWNENITSG 189
           L L SN + G      G M+ L                    L  L  LDL +N N+T  
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGP 251

Query: 190 SLTRLGLANLTNLKELDLRGCGITTS--QGLADLPNLKTLDLRDCGIT--TIQGLAKLKN 245
             + LG  NL NL+ L L    ++      +  L  L +LDL D  ++    + + +L+N
Sbjct: 252 IPSSLG--NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Query: 246 LEALDLSWNNINGSLESQGLADLPNLKILDL 276
           LE L L  NN  G +    L  LP L++L L
Sbjct: 310 LEILHLFSNNFTGKI-PVALTSLPRLQVLQL 339

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 60/217 (27%), Positives = 83/217 (38%), Gaps = 28/217 (12%)

Query: 93  HPFEELQSLNLSDNWFRGFYEN--KAYDSFGSLKQLKILDLGCNFFNDS---ILPYLNTL 147
            P   L+ L LS N                     L+ LDL  N        +L  L   
Sbjct: 48  RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS 107

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQ----VLDLSWNENITSGSLTRLGLA--NLTN 201
           +SL  L L +N +   G       L+ L      L L  N  +   S   L  A     +
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRD 166

Query: 202 LKELDLRGCGI------TTSQGLADLPNLKTLDLRDCGITTI------QGLAKLKNLEAL 249
           LKEL+L   GI        ++GL    NL+ LDL + G+T        + LA LK+LE L
Sbjct: 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226

Query: 250 DLSWNNING----SLESQGLADLPNLKILDLRDCGMT 282
           +L  NN+      +L S  L+   +L  L L    +T
Sbjct: 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 138 DSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA-NLRYLQVLDLSWNENITSGSLTRLGL 196
           D  L  L+    L  LIL  + +     +  LA +   LQVLDL   ENIT   +  L  
Sbjct: 42  DPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALAT 101

Query: 197 ANLTNLKELDL---RGCGITTSQGLADL----PNLKTLDLRDCGIT--TIQGLA--KLKN 245
            N   L+ ++L   R   + T   L+ L      L+T+    C +T   +  LA    K+
Sbjct: 102 -NCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKS 160

Query: 246 LEALDLS--WNNINGSLESQGLADL-PNLKILDLRDCGMTT 283
           LE L L+   N  + S+ +   ++  PNL +L+ R C + T
Sbjct: 161 LERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.4 bits (133), Expect = 9e-09
 Identities = 64/189 (33%), Positives = 88/189 (46%), Gaps = 15/189 (7%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L SL+L+ N  R             L  L  LDL  N   D         ++L  L L  
Sbjct: 95  LPSLDLNLNRLRSNISELL-----ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N IE   +   L NL  L+ LDLS+N+      L    L+NL+NL  LDL G  I+    
Sbjct: 150 NKIESLPS--PLRNLPNLKNLDLSFNDLSDLPKL----LSNLSNLNNLDLSGNKISDLPP 203

Query: 218 LADLPN-LKTLDL-RDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275
             +L + L+ LDL  +  I  +  L+ LKNL  L+LS N +    ES G   L NL+ LD
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLD 261

Query: 276 LRDCGMTTI 284
           L +  +++I
Sbjct: 262 LSNNQISSI 270

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
              LQS+NLS N  RG        S GS+  L++LDL  N FN SI   L  LTSL  L 
Sbjct: 441 LRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 155 LYSNSIEG 162
           L  NS+ G
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 17/191 (8%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND--SILPYLNTL 147
            +      L+ L+LSDN                L  LK LDL    FND   +   L+ L
Sbjct: 134 LIGLLKSNLKELDLSDNKIESLPSPLRN-----LPNLKNLDLS---FNDLSDLPKLLSNL 185

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
           ++L  L L  N I  S     +  L  L+ LDLS N  I   S     L+NL NL  L+L
Sbjct: 186 SNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSIIELLSS----LSNLKNLSGLEL 239

Query: 208 RG-CGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
                    + + +L NL+TLDL +  I++I  L  L NL  LDLS N+++ +L    L 
Sbjct: 240 SNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALL 299

Query: 267 DLPNLKILDLR 277
            L    +L+L 
Sbjct: 300 LLLLELLLNLL 310

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 223 NLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279
           NLK+LDL +  +T I       L NL+ LDLS NN+  S+  +  + LP+L+ LDL   
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 13/185 (7%)

Query: 96  EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLIL 155
           ++L SL+LSDN   G    +  +    L+ L+IL L  N F   I   L +L  L  L L
Sbjct: 284 QKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339

Query: 156 YSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS 215
           +SN   G    + L     L VLDLS N    +G +   GL +  NL +L L    +   
Sbjct: 340 WSNKFSG-EIPKNLGKHNNLTVLDLSTNN--LTGEIPE-GLCSSGNLFKLILFSNSLEGE 395

Query: 216 --QGLADLPNLKTLDLRDCGIT--TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL 271
             + L    +L+ + L+D   +        KL  +  LD+S NN+ G + S+   D+P+L
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSL 454

Query: 272 KILDL 276
           ++L L
Sbjct: 455 QMLSL 459

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 58/189 (30%), Positives = 83/189 (43%), Gaps = 26/189 (13%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           LQ L L  N F G    +   + G    L +LDL  N     I   L +  +L  LIL+S
Sbjct: 334 LQVLQLWSNKFSG----EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389

Query: 158 NSIEGS-----GTMQGLANLRYLQVLDLSWNENITSGSL----TRLGLANLTNLKELDLR 208
           NS+EG      G  + L  +R LQ       +N  SG L    T+L L    ++   +L+
Sbjct: 390 NSLEGEIPKSLGACRSLRRVR-LQ-------DNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 209 GCGITTSQGLADLPNLKTLDL-RDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD 267
           G     +    D+P+L+ L L R+     +      K LE LDLS N  +G++  + L  
Sbjct: 442 G---RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV-PRKLGS 497

Query: 268 LPNLKILDL 276
           L  L  L L
Sbjct: 498 LSELMQLKL 506

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 200 TNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
           TNL+ LDL    IT    L++LPNL+TLDL    IT +  L+ 
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
            NL+TLDL +  IT +  L+ L NLE LDLS N I
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKI 35

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 201 NLKELDLRGCGITT-SQG-LADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNI 256
           NLK LDL    +T    G    LPNLK LDL    +T+I  +  + L +L +LDLS NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 25/193 (12%)

Query: 122 SLKQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGSGT-----MQGLANL 172
            L  L++L L  N   +     +   L    SL  L L  N            +QGL   
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI------TTSQGLADL-PNLK 225
             LQ LDLS N     G      L   ++L+EL L   G+        ++GL DL P L+
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 226 TLDLRDCGIT------TIQGLAKLKNLEALDLSWNNINGS---LESQGLADLPNLKILDL 276
            L L    +         + L   ++L+ L+L+ N I  +     ++GL    NL++LDL
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 277 RDCGMTTIQGKIF 289
            + G+T       
Sbjct: 201 NNNGLTDEGASAL 213

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 101 LNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSI 160
           L L +   RGF  N        L+ L+ ++L  N    +I P L ++TSL  L L  NS 
Sbjct: 423 LGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 161 EGSGTMQGLANLRYLQVLDLSWNENITSGSL 191
            GS   + L  L  L++L+L  N N  SG +
Sbjct: 479 NGS-IPESLGQLTSLRILNL--NGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 29/168 (17%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY 156
            LQ L+L+ N F G       DSFGS K+L+ LDL  N F+ ++   L +L+ L  L L 
Sbjct: 453 SLQMLSLARNKFFG----GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 157 SNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQ 216
            N + G      L++ + L  LDLS N+   SG +     + +  L +LDL     + +Q
Sbjct: 508 ENKLSGE-IPDELSSCKKLVSLDLSHNQ--LSGQIP-ASFSEMPVLSQLDL-----SQNQ 558

Query: 217 GLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQG 264
              ++P               + L  +++L  +++S N+++GSL S G
Sbjct: 559 LSGEIP---------------KNLGNVESLVQVNISHNHLHGSLPSTG 591

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L++L+LS N       +       +L  L  LDL  N  +D + P +  L++L  L L +
Sbjct: 165 LKNLDLSFNDL-----SDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSN 218

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           NSI     +  L+NL+ L  L+LS N+           + NL+NL+ LDL    I++   
Sbjct: 219 NSIIEL--LSSLSNLKNLSGLELSNNKLEDLPES----IGNLSNLETLDLSNNQISSISS 272

Query: 218 LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275
           L  L NL+ LDL    ++    L  L  L    L    +        L  +     + 
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNIL 330

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 11/65 (16%)

Query: 175 LQVLDLSWNENITSGSLTRLG---LANLTNLKELDLRGCGITT--SQGLADLPNLKTLDL 229
           L+ LDLS      +  LT +       L NLK LDL G  +T+   +  + LP+L++LDL
Sbjct: 2   LKSLDLS------NNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55

Query: 230 RDCGI 234
               +
Sbjct: 56  SGNNL 60

Length = 60

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 52/219 (23%), Positives = 86/219 (39%), Gaps = 51/219 (23%)

Query: 96  EELQSLNLSDNWFRGFYENKAYDSFGSLKQ-------LKILDLGCNFFNDSILP----YL 144
             L+ +N SD  F G  +++ Y +   L +       L+ +DL  N F           +
Sbjct: 58  RNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLI 116

Query: 145 NTLTSLTTLILYSN------------SIEGSGTMQGLANLRYLQVLDLSWNENITSGS-- 190
           ++ T L  L L +N            ++      +  A+   L+V+    N  + +GS  
Sbjct: 117 SSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKE 175

Query: 191 LTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLEA 248
           L+   L +  NLKE+ ++  GI                 R  G+T +   GL    +LE 
Sbjct: 176 LSAALLESHENLKEVKIQQNGI-----------------RPEGVTMLAFLGLFYSHSLEV 218

Query: 249 LDLSWNNINGSLESQGLADL----PNLKILDLRDCGMTT 283
           LDL  +N      S+ LAD       L+ L L DC ++ 
Sbjct: 219 LDLQ-DNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.58
PLN03150	623	hypothetical protein; Provisional	99.58
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.55
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.31
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.29
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
PLN03150	623	hypothetical protein; Provisional	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.89
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.33
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.25
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.15
PRK15386	426	type III secretion protein GogB; Provisional	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.42
KOG4308	478	consensus LRR-containing protein [Function unknown	97.42
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.99
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.58
KOG4308	478	consensus LRR-containing protein [Function unknown	96.57
smart00370	26	LRR Leucine-rich repeats, outliers.	96.11
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.03
KOG4341	483	consensus F-box protein containing LRR [General fu	95.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
KOG4341	483	consensus F-box protein containing LRR [General fu	95.24
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.18
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.91
smart00370	26	LRR Leucine-rich repeats, outliers.	93.91
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.98
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.54
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	85.89
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.75
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.5

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.4e-30  Score=253.35  Aligned_cols=252  Identities=29%  Similarity=0.395  Sum_probs=166.0

Q ss_pred             cHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEeccccCcEEeeccccccccccccccccccc
Q 022897            8 LETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLL   87 (290)
Q Consensus         8 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~   87 (290)
                      .+.|+.||++||+.+.+  +    ...+.+|..     ..+|| .|.||.|+. .++|+.++++++.    +     ...
T Consensus        27 ~~~~~~~l~~~~~~~~~--~----~~~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~----i-----~~~   84 (968)
T PLN00113         27 HAEELELLLSFKSSIND--P----LKYLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKN----I-----SGK   84 (968)
T ss_pred             CHHHHHHHHHHHHhCCC--C----cccCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCC----c-----ccc
Confidence            56899999999999865  4    456789976     67788 999999985 5689999999875    1     111


Q ss_pred             CCCcCCCCCCCcEEECCCCcccCccchhhhhhcCC----------------------CCCCcEEECCCCcCCCCchhhcc
Q 022897           88 NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS----------------------LKQLKILDLGCNFFNDSILPYLN  145 (290)
Q Consensus        88 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~----------------------l~~L~~L~l~~n~l~~~~~~~l~  145 (290)
                      .+..+..+++|+.|++++|.+.+.+|..   .+..                      +++|++|++++|.+.+.+|..++
T Consensus        85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~  161 (968)
T PLN00113         85 ISSAIFRLPYIQTINLSNNQLSGPIPDD---IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIG  161 (968)
T ss_pred             CChHHhCCCCCCEEECCCCccCCcCChH---HhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHh
Confidence            1233455566666666666655444431   1223                      44555555555555555565666


Q ss_pred             CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCC
Q 022897          146 TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPN  223 (290)
Q Consensus       146 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~  223 (290)
                      .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+  .+.+|. .+..+++|++|++++|.++  .|..+..+++
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l--~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQL--VGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             cCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCC--cCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence            66666666666666655443 3556666666666666665  444554 5666667777777776665  5556666777


Q ss_pred             CcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          224 LKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       224 L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      |++|++++|.+++  +..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..|
T Consensus       238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~  304 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELV  304 (968)
T ss_pred             CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCChhH
Confidence            7777777777665  556667777777777777777666665 6667777777777777777766543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=5.9e-23  Score=200.11  Aligned_cols=187  Identities=29%  Similarity=0.378  Sum_probs=90.2

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      .++.+++|++|++++|.+.+..|.    .+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++..+ ..+.
T Consensus       159 ~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~  233 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIG  233 (968)
T ss_pred             HHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC-hhHh
Confidence            345555566666665555554444    45555555555555555555555555555555555555555554333 2445


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCC
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNL  246 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L  246 (290)
                      .+++|++|++++|.+  .+.+|. .+..+++|++|++++|.+.  .|..+..+++|++|++++|.+++  +..+..+++|
T Consensus       234 ~l~~L~~L~L~~n~l--~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  310 (968)
T PLN00113        234 GLTSLNHLDLVYNNL--TGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL  310 (968)
T ss_pred             cCCCCCEEECcCcee--ccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence            555555555555544  333333 4444455555555554443  33344444444444444444443  3333444444


Q ss_pred             CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       247 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      +.|++++|.+++.+|.. +..+++|+.|++++|.+++.+|
T Consensus       311 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        311 EILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             cEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcCcCC
Confidence            44444444444333333 3344444444444444443333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=2.5e-22  Score=174.16  Aligned_cols=198  Identities=28%  Similarity=0.349  Sum_probs=151.2

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcc------------------------cCccchhhhhhcCCCCCCcEEECCCCcCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWF------------------------RGFYENKAYDSFGSLKQLKILDLGCNFFNDS  139 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l------------------------~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  139 (290)
                      +..++...|.++++|+.|+|..|.+                        .....+    .|..+.++++|+|+.|+++..
T Consensus       209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc----ceeeecccceeecccchhhhh
Confidence            4445555555555666655555554                        333333    566677777777777777655


Q ss_pred             chhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcC
Q 022897          140 ILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQG  217 (290)
Q Consensus       140 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~  217 (290)
                      --..+.++..|+.|++++|.+....+ +.....++|++|+|+.|.+   ..+++..+..+..|+.|+|+.|.++  ...+
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~-d~WsftqkL~~LdLs~N~i---~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a  360 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHI-DSWSFTQKLKELDLSSNRI---TRLDEGSFRVLSQLEELNLSHNSIDHLAEGA  360 (873)
T ss_pred             hcccccccchhhhhccchhhhheeec-chhhhcccceeEecccccc---ccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence            45556677888888888888775433 4677778888888888884   4566667888888888888888887  4556


Q ss_pred             CCCCCCCcEEEccCCCCCC-----ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccCC
Q 022897          218 LADLPNLKTLDLRDCGITT-----IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       218 ~~~l~~L~~L~l~~n~l~~-----~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f~  290 (290)
                      +..+++|+.|+|+.|.++.     ...+..+++|+.|++.+|++. .||..+|.++++|++|||.+|.|..+-|++|.
T Consensus       361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccc
Confidence            7888999999999998877     345777999999999999998 89998899999999999999999999999984

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.9e-21  Score=168.71  Aligned_cols=164  Identities=27%  Similarity=0.310  Sum_probs=69.6

Q ss_pred             cCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897          120 FGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL  199 (290)
Q Consensus       120 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  199 (290)
                      |..-.++++|+|++|.++..--..|..+.+|..|.|+.|.++. .+...|..+++|+.|+|..|.+   ..+....|..+
T Consensus       169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~i---rive~ltFqgL  244 (873)
T KOG4194|consen  169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRI---RIVEGLTFQGL  244 (873)
T ss_pred             CCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccce---eeehhhhhcCc
Confidence            3333344444444444433333333334444444444444432 2223444444444444444442   11111133334


Q ss_pred             CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEe
Q 022897          200 TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD  275 (290)
Q Consensus       200 ~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~  275 (290)
                      ++|+.|.|..|++.  ...+|..+.++++|+|+.|+++.  -.++..++.|++|++|+|.+. .|....++-.++|++|+
T Consensus       245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELD  323 (873)
T ss_pred             hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEe
Confidence            44444444444443  23334444455555555555444  333444555555555555554 33322244445555555


Q ss_pred             cCCCCCccccccc
Q 022897          276 LRDCGMTTIQGKI  288 (290)
Q Consensus       276 L~~n~l~~~~~~~  288 (290)
                      |++|+|+...++.
T Consensus       324 Ls~N~i~~l~~~s  336 (873)
T KOG4194|consen  324 LSSNRITRLDEGS  336 (873)
T ss_pred             ccccccccCChhH
Confidence            5555555544443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-21  Score=162.98  Aligned_cols=239  Identities=25%  Similarity=0.276  Sum_probs=174.8

Q ss_pred             CCCCCCCCCCC---CceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhh
Q 022897           43 DGMPSDCCDDW---EGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDS  119 (290)
Q Consensus        43 ~~~~~~~c~~w---~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  119 (290)
                      ..|+..|.++-   .-|.|+.....-++-+|+.......++.+.++.+++..|+.+++|++|+|++|+|+.+.|.    +
T Consensus        35 ~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----A  110 (498)
T KOG4237|consen   35 SACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD----A  110 (498)
T ss_pred             ccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH----h
Confidence            34777772254   4589987777777889999888888888999999999999999999999999999999888    8


Q ss_pred             cCCCCCCcEEECCC-CcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897          120 FGSLKQLKILDLGC-NFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN  198 (290)
Q Consensus       120 l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  198 (290)
                      |.+++.|..|-+.+ |+++......|.++.+|+.|.+.-|.+... ....+..++++..|.+..|.+   ..+....+..
T Consensus       111 F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci-r~~al~dL~~l~lLslyDn~~---q~i~~~tf~~  186 (498)
T KOG4237|consen  111 FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI-RQDALRDLPSLSLLSLYDNKI---QSICKGTFQG  186 (498)
T ss_pred             hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch-hHHHHHHhhhcchhcccchhh---hhhccccccc
Confidence            99998888887766 888876666777788888887777777643 334666667776666666653   2233223444


Q ss_pred             CCCccEEEcCCCCCC----------------------------------------------------------------C
Q 022897          199 LTNLKELDLRGCGIT----------------------------------------------------------------T  214 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~----------------------------------------------------------------~  214 (290)
                      +.+++.+.+..|.+.                                                                .
T Consensus       187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP  266 (498)
T KOG4237|consen  187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP  266 (498)
T ss_pred             hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence            444444444433200                                                                1


Q ss_pred             CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccCC
Q 022897          215 SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       215 ~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f~  290 (290)
                      ...|..+++|+.|++++|.+++  ..+|.....+++|.|..|++. .+...+|.++..|+.|+|.+|+|+...|.+|+
T Consensus       267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            1234566788888888888887  556777778888888888876 66666688888888888888888888887774

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.70  E-value=4.1e-19  Score=155.84  Aligned_cols=180  Identities=27%  Similarity=0.320  Sum_probs=109.7

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      +..+..|+.|+|++|++...+.     .+..-+++-+|+||+|++....-+.+.++..|-+|+|++|.+.. .|| .+..
T Consensus        99 iF~l~dLt~lDLShNqL~EvP~-----~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPP-Q~RR  171 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLREVPT-----NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPP-QIRR  171 (1255)
T ss_pred             hcccccceeeecchhhhhhcch-----hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCH-HHHH
Confidence            4456666666666666654322     34444555555555555543222223345555555555555432 121 3444


Q ss_pred             C------------------------CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcE
Q 022897          172 L------------------------RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKT  226 (290)
Q Consensus       172 l------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~  226 (290)
                      +                        ++|+.|.+++.+- +...+|. .+..+.+|+.++++.|.+. .|+.+.++.+|+.
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Pt-sld~l~NL~dvDlS~N~Lp~vPecly~l~~Lrr  249 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR-TLDNIPT-SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRR  249 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc-hhhcCCC-chhhhhhhhhccccccCCCcchHHHhhhhhhhe
Confidence            4                        4444444444332 1234454 5667777888888888877 6777788888888


Q ss_pred             EEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897          227 LDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT  282 (290)
Q Consensus       227 L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  282 (290)
                      |++++|+|+. -...+...+|++|++|.|+++ .+|.. +..+++|+.|.+.+|+++
T Consensus       250 LNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  250 LNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             eccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCccc
Confidence            8888888877 334555667788888888887 67766 777788888888888664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=1.2e-19  Score=135.05  Aligned_cols=184  Identities=23%  Similarity=0.343  Sum_probs=146.4

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      +.++.+++.|.+++|.++...|     .+..+.+|++|++++|++. .+|..++.+++|+.|+++-|.+.-  .+..|++
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vpp-----nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~--lprgfgs  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPP-----NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI--LPRGFGS  100 (264)
T ss_pred             ccchhhhhhhhcccCceeecCC-----cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc--CccccCC
Confidence            4567788899999999987766     5778889999999999987 678888999999999999888753  5568999


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEE
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEAL  249 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L  249 (290)
                      ++.|+.|++..|.+.. ..+|. .|..++.|+.|+++.|.+. .|+.++++++|+.|.+..|.+.. |..++.+..|++|
T Consensus       101 ~p~levldltynnl~e-~~lpg-nff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNE-NSLPG-NFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL  178 (264)
T ss_pred             Cchhhhhhcccccccc-ccCCc-chhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence            9999999999888732 34555 6777888899999999998 78889999999999999998887 7788889999999


Q ss_pred             eCCCCCCCCcccccccCCCC---CCCEEecCCCCCcccccc
Q 022897          250 DLSWNNINGSLESQGLADLP---NLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       250 ~l~~n~l~~~i~~~~l~~l~---~L~~L~L~~n~l~~~~~~  287 (290)
                      .+.+|.++ .+|+. ++.+.   +-+.+.+.+|.....+.+
T Consensus       179 hiqgnrl~-vlppe-l~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPE-LANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             hcccceee-ecChh-hhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            99999998 77776 54432   234555666665544443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.69  E-value=1.5e-18  Score=152.44  Aligned_cols=184  Identities=29%  Similarity=0.329  Sum_probs=134.5

Q ss_pred             cCCCCCCCcEEECCCCcccCc-cchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897           91 LFHPFEELQSLNLSDNWFRGF-YENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL  169 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  169 (290)
                      .+..++.|+.+.+..|++... +|.    .+..+..|+.||||.|++. ..|..+..-+++.+|+|++|++.. +|.+.+
T Consensus        73 ELs~Lp~LRsv~~R~N~LKnsGiP~----diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lf  146 (1255)
T KOG0444|consen   73 ELSDLPRLRSVIVRDNNLKNSGIPT----DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIET-IPNSLF  146 (1255)
T ss_pred             hhccchhhHHHhhhccccccCCCCc----hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcccc-CCchHH
Confidence            356788999999999988543 233    6789999999999999997 688888888999999999999974 576788


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---------------------------CCcCCCCCC
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---------------------------TSQGLADLP  222 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---------------------------~~~~~~~l~  222 (290)
                      .+++.|-.|++++|.+   ..+|+ .+..+..|++|.|++|.+.                           +|..+..+.
T Consensus       147 inLtDLLfLDLS~NrL---e~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~  222 (1255)
T KOG0444|consen  147 INLTDLLFLDLSNNRL---EMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH  222 (1255)
T ss_pred             HhhHhHhhhccccchh---hhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence            9999999999999994   56777 6667777777777777543                           344455555


Q ss_pred             CCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          223 NLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       223 ~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      +|..++++.|.+.. |+.+.++++|+.|+||+|.++ .+... .+.-.+|+.|+|+.|+++..|.
T Consensus       223 NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~-~~~W~~lEtLNlSrNQLt~LP~  285 (1255)
T KOG0444|consen  223 NLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMT-EGEWENLETLNLSRNQLTVLPD  285 (1255)
T ss_pred             hhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeecc-HHHHhhhhhhccccchhccchH
Confidence            66666666666665 556666666666666666666 34433 4444566666666666665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.4e-19  Score=134.76  Aligned_cols=178  Identities=24%  Similarity=0.327  Sum_probs=115.6

Q ss_pred             CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh
Q 022897           63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP  142 (290)
Q Consensus        63 ~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  142 (290)
                      ..++++.|+++.         +... +..+..+.+|+.|++.+|++...+.     .++.+++|++|+++.|++. .+|.
T Consensus        33 s~ITrLtLSHNK---------l~~v-ppnia~l~nlevln~~nnqie~lp~-----~issl~klr~lnvgmnrl~-~lpr   96 (264)
T KOG0617|consen   33 SNITRLTLSHNK---------LTVV-PPNIAELKNLEVLNLSNNQIEELPT-----SISSLPKLRILNVGMNRLN-ILPR   96 (264)
T ss_pred             hhhhhhhcccCc---------eeec-CCcHHHhhhhhhhhcccchhhhcCh-----hhhhchhhhheecchhhhh-cCcc
Confidence            456666666665         1222 2336667777777777777765543     5677777777777777765 5677


Q ss_pred             hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCC
Q 022897          143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADL  221 (290)
Q Consensus       143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l  221 (290)
                      .|+.+|.|+.||+.+|.+.....+..|..+..|+.|++++|.+   ..+|. .++++++|+.|.+..|.+. .|..++.+
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf---e~lp~-dvg~lt~lqil~lrdndll~lpkeig~l  172 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF---EILPP-DVGKLTNLQILSLRDNDLLSLPKEIGDL  172 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc---ccCCh-hhhhhcceeEEeeccCchhhCcHHHHHH
Confidence            7777777777777777777666666666677777777777774   34555 6777777777777777665 67777777


Q ss_pred             CCCcEEEccCCCCCC-ccccccCC---CCCEEeCCCCCCCCcc
Q 022897          222 PNLKTLDLRDCGITT-IQGLAKLK---NLEALDLSWNNINGSL  260 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~-~~~l~~~~---~L~~L~l~~n~l~~~i  260 (290)
                      ..|++|++.+|.++. |+.++.+.   +-+++.+..|.....|
T Consensus       173 t~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  173 TRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             HHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            777777777777776 54444321   2233444555444333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=3e-17  Score=137.12  Aligned_cols=187  Identities=25%  Similarity=0.310  Sum_probs=124.4

Q ss_pred             ccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC--
Q 022897           86 LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS--  163 (290)
Q Consensus        86 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--  163 (290)
                      .++......++++..||+.+|++...+.     .+..+++|++||+++|.++ .+|..++++ +|+.|.+.+|.+...  
T Consensus       242 ~lpae~~~~L~~l~vLDLRdNklke~Pd-----e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr  314 (565)
T KOG0472|consen  242 MLPAEHLKHLNSLLVLDLRDNKLKEVPD-----EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRR  314 (565)
T ss_pred             hhHHHHhcccccceeeeccccccccCch-----HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHH
Confidence            3444445567777777887777765533     4566777788888888777 466677777 788888877765310  


Q ss_pred             -----------------------------------cch---hhcccCCCCC--------------------------eee
Q 022897          164 -----------------------------------GTM---QGLANLRYLQ--------------------------VLD  179 (290)
Q Consensus       164 -----------------------------------~~~---~~~~~l~~L~--------------------------~L~  179 (290)
                                                         .+.   .....+...+                          ..+
T Consensus       315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn  394 (565)
T KOG0472|consen  315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN  394 (565)
T ss_pred             HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence                                               000   0000011122                          223


Q ss_pred             CCCCCCCC---------------------CCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-
Q 022897          180 LSWNENIT---------------------SGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-  236 (290)
Q Consensus       180 l~~n~~~~---------------------~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-  236 (290)
                      ++.|++..                     .+ .++..+..+++|..|++++|.+- .|..++.+..|+.|+++.|+|.. 
T Consensus       395 fskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l  473 (565)
T KOG0472|consen  395 FSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML  473 (565)
T ss_pred             cccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc
Confidence            33332210                     01 11113666788888888888776 77777777788888888887644 


Q ss_pred             ------------------------ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897          237 ------------------------IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT  282 (290)
Q Consensus       237 ------------------------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  282 (290)
                                              ++.+..+.+|.+||+.+|.+. .+|+. ++++.+|++|+|++|+|.
T Consensus       474 P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  474 PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh-hccccceeEEEecCCccC
Confidence                                    223667889999999999998 89998 999999999999999998

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.61  E-value=5.4e-14  Score=131.20  Aligned_cols=165  Identities=27%  Similarity=0.325  Sum_probs=87.8

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ  176 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  176 (290)
                      .|+.|++++|.++..+.     .+  .++|++|++++|.++ .+|..+.  ++|+.|++++|.+.. ++. .+.  .+|+
T Consensus       200 ~L~~L~Ls~N~LtsLP~-----~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~-~l~--s~L~  265 (754)
T PRK15370        200 QITTLILDNNELKSLPE-----NL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPE-RLP--SALQ  265 (754)
T ss_pred             CCcEEEecCCCCCcCCh-----hh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CCh-hHh--CCCC
Confidence            57777777777765432     12  136777777777665 3444332  356666666666552 222 221  3456


Q ss_pred             eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCC-------------------CCCCCcEEEccCCCCCC
Q 022897          177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLA-------------------DLPNLKTLDLRDCGITT  236 (290)
Q Consensus       177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~-------------------~l~~L~~L~l~~n~l~~  236 (290)
                      .|++++|.+   ..+|. .+  .++|++|++++|.++ +|..+.                   ..++|+.|++++|.++.
T Consensus       266 ~L~Ls~N~L---~~LP~-~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        266 SLDLFHNKI---SCLPE-NL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS  339 (754)
T ss_pred             EEECcCCcc---Ccccc-cc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc
Confidence            666665554   12332 11  134555555555554 222110                   11355666666666555


Q ss_pred             -ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897          237 -IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       237 -~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                       +..+  .++|+.|++++|.++ .+|.. +  .++|+.|+|++|+|+.+++.
T Consensus       340 LP~~l--~~sL~~L~Ls~N~L~-~LP~~-l--p~~L~~LdLs~N~Lt~LP~~  385 (754)
T PRK15370        340 LPASL--PPELQVLDVSKNQIT-VLPET-L--PPTITTLDVSRNALTNLPEN  385 (754)
T ss_pred             CChhh--cCcccEEECCCCCCC-cCChh-h--cCCcCEEECCCCcCCCCCHh
Confidence             2222  246777777777776 45554 2  25677777777777766543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=9.7e-16  Score=131.27  Aligned_cols=191  Identities=32%  Similarity=0.330  Sum_probs=130.6

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCC----chhhccCC-CCCCEEEccCCCCCCCcc
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDS----ILPYLNTL-TSLTTLILYSNSIEGSGT  165 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~~~~~~~  165 (290)
                      .+..+++|++|++++|.+.+..+......... +.|++|++++|.+.+.    +...+..+ ++|++|++++|.+++...
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            45567889999999888876544422222233 5699999998888742    23344566 888999999998875322


Q ss_pred             ---hhhcccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCC
Q 022897          166 ---MQGLANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGI  234 (290)
Q Consensus       166 ---~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l  234 (290)
                         ...+..+++|++|++++|.+...+  .++. .+..+++|++|++++|.+.      ....+..+++|++|++++|.+
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence               224556678999999988873211  1222 3455678999999998876      334566778899999999988


Q ss_pred             CC--ccccc-----cCCCCCEEeCCCCCCCC----cccccccCCCCCCCEEecCCCCCccc
Q 022897          235 TT--IQGLA-----KLKNLEALDLSWNNING----SLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       235 ~~--~~~l~-----~~~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      ++  +..+.     ..+.|++|++++|.+++    .+... +..+++|+++++++|.++..
T Consensus       234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHH
Confidence            86  22221     23789999999998872    22233 55668899999999988855

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=8.4e-16  Score=131.68  Aligned_cols=212  Identities=29%  Similarity=0.285  Sum_probs=150.9

Q ss_pred             EEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccC--ccchhhhhhcCCCCCCcEEECCCCcCCCCchh
Q 022897           65 VMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRG--FYENKAYDSFGSLKQLKILDLGCNFFNDSILP  142 (290)
Q Consensus        65 v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  142 (290)
                      ++.+++.++.    +...+...+ ...+...+.+++++++++.+.+  .....+...+..+++|++|++++|.+.+..+.
T Consensus        25 L~~l~l~~~~----l~~~~~~~i-~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          25 LQVLRLEGNT----LGEEAAKAL-ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             ccEEeecCCC----CcHHHHHHH-HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            6677777766    222222222 2335567889999999988763  11123334677899999999999999876666


Q ss_pred             hccCCCC---CCEEEccCCCCCCCcc---hhhcccC-CCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC
Q 022897          143 YLNTLTS---LTTLILYSNSIEGSGT---MQGLANL-RYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT  213 (290)
Q Consensus       143 ~l~~l~~---L~~L~l~~n~~~~~~~---~~~~~~l-~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~  213 (290)
                      .+..+..   |++|++++|.+.+...   ...+..+ ++|+.|++++|.+...+  .+.. .+..+++|++|++++|.++
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCc
Confidence            6655555   9999999999875322   1245566 89999999999973211  1222 4667789999999999987


Q ss_pred             ------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCccccccc----CCCCCCCEEecC
Q 022897          214 ------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSLESQGL----ADLPNLKILDLR  277 (290)
Q Consensus       214 ------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l----~~l~~L~~L~L~  277 (290)
                            .+..+...++|++|++++|.+++      ...+..+++|++|++++|.+++.......    ...+.|++|+++
T Consensus       179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence                  23345566799999999999986      23466788999999999999853332211    224799999999


Q ss_pred             CCCCc
Q 022897          278 DCGMT  282 (290)
Q Consensus       278 ~n~l~  282 (290)
                      +|.++
T Consensus       259 ~n~i~  263 (319)
T cd00116         259 CNDIT  263 (319)
T ss_pred             CCCCC
Confidence            99997

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.58  E-value=8e-18  Score=140.53  Aligned_cols=159  Identities=25%  Similarity=0.275  Sum_probs=106.9

Q ss_pred             cCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897          120 FGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL  199 (290)
Q Consensus       120 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  199 (290)
                      ++.+..|..++..+|+++ ..|+.++.+.+|..+++.+|.+... ++ ..-.++.|++++...|.   .+.+|+ .++.+
T Consensus       133 i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~-~~i~m~~L~~ld~~~N~---L~tlP~-~lg~l  205 (565)
T KOG0472|consen  133 IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PE-NHIAMKRLKHLDCNSNL---LETLPP-ELGGL  205 (565)
T ss_pred             HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CH-HHHHHHHHHhcccchhh---hhcCCh-hhcch
Confidence            334444444444444444 3444444555555555555555432 22 22236777788877777   456776 77888


Q ss_pred             CCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC-c-cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecC
Q 022897          200 TNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT-I-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR  277 (290)
Q Consensus       200 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~  277 (290)
                      .+|..|++..|++...+.|..+..|.+|+++.|++.. + +..++++++.+||+..|+++ ++|.+ +.-+.+|.+||++
T Consensus       206 ~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde-~clLrsL~rLDlS  283 (565)
T KOG0472|consen  206 ESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE-ICLLRSLERLDLS  283 (565)
T ss_pred             hhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH-HHHhhhhhhhccc
Confidence            8888888888888855577788888888888888777 3 23557888888888888887 67777 6677888888888


Q ss_pred             CCCCcccccc
Q 022897          278 DCGMTTIQGK  287 (290)
Q Consensus       278 ~n~l~~~~~~  287 (290)
                      +|.|++.+++
T Consensus       284 NN~is~Lp~s  293 (565)
T KOG0472|consen  284 NNDISSLPYS  293 (565)
T ss_pred             CCccccCCcc
Confidence            8888887765

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=2.5e-14  Score=132.33  Aligned_cols=156  Identities=31%  Similarity=0.347  Sum_probs=94.0

Q ss_pred             CccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEeccc--c--CcEEeeccccccccccc
Q 022897            4 YKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNAT--T--RRVMQLSLTYTERLNYY   79 (290)
Q Consensus         4 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~~--~--~~v~~l~l~~~~~l~~l   79 (290)
                      ...+.+.|+.||+.+|+.+..  +.      ..+|.+ + .|....| .|.||.|...  .  ..++.++|+++.    +
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~--~~------~~~W~g-~-~C~p~~~-~w~Gv~C~~~~~~~~~~v~~L~L~~n~----L  430 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGL--PL------RFGWNG-D-PCVPQQH-PWSGADCQFDSTKGKWFIDGLGLDNQG----L  430 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCC--cc------cCCCCC-C-CCCCccc-ccccceeeccCCCCceEEEEEECCCCC----c
Confidence            345677899999999999865  31      247974 1 1222234 7999999531  1  135566666554    1


Q ss_pred             ccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCC
Q 022897           80 DRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNS  159 (290)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  159 (290)
                           ....+..+..+++|+.|+|++|.+.+.+|.    .+..++.|+.|+|++|.+++.+|..++.+++|++|+|++|.
T Consensus       431 -----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        431 -----RGFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             -----cccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence                 112233455666666666666666666555    56666666666666666666666666666666666666666


Q ss_pred             CCCCcchhhccc-CCCCCeeeCCCCC
Q 022897          160 IEGSGTMQGLAN-LRYLQVLDLSWNE  184 (290)
Q Consensus       160 ~~~~~~~~~~~~-l~~L~~L~l~~n~  184 (290)
                      +++.+|. .+.. ..++..+++.+|.
T Consensus       502 l~g~iP~-~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        502 LSGRVPA-ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ccccCCh-HHhhccccCceEEecCCc
Confidence            6665553 2322 2344555665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=1.7e-14  Score=133.98  Aligned_cols=82  Identities=22%  Similarity=0.233  Sum_probs=57.5

Q ss_pred             CccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCC
Q 022897          201 NLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC  279 (290)
Q Consensus       201 ~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n  279 (290)
                      +|+.|++++|.++ +|..   .++|+.|++++|.++..+.+  ..+|+.|++++|.++ .+|.. +..+++|+.|+|++|
T Consensus       383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt-~LP~s-l~~L~~L~~LdLs~N  455 (788)
T PRK15387        383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGN  455 (788)
T ss_pred             ccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCccc-ccChH-HhhccCCCeEECCCC
Confidence            4566666666665 2321   24677777777777663322  245777888888887 78877 788999999999999


Q ss_pred             CCcccccccC
Q 022897          280 GMTTIQGKIF  289 (290)
Q Consensus       280 ~l~~~~~~~f  289 (290)
                      +|++.++..+
T Consensus       456 ~Ls~~~~~~L  465 (788)
T PRK15387        456 PLSERTLQAL  465 (788)
T ss_pred             CCCchHHHHH
Confidence            9998876543

>PLN03210 Resistant to P

Probab=99.55  E-value=2e-13  Score=134.82  Aligned_cols=103  Identities=26%  Similarity=0.440  Sum_probs=53.0

Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCC-CC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEe
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG-IT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALD  250 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~  250 (290)
                      +|+.|++++|..  ...+|. .++++++|+.|++++|. +. +|..+ .+++|+.|++++|.... .+.  ...+|+.|+
T Consensus       779 sL~~L~Ls~n~~--l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~  852 (1153)
T PLN03210        779 SLTRLFLSDIPS--LVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLN  852 (1153)
T ss_pred             cchheeCCCCCC--ccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeE
Confidence            344444444443  334444 45556666666666553 22 33322 44555555555543221 111  124566666


Q ss_pred             CCCCCCCCcccccccCCCCCCCEEecCCC-CCccc
Q 022897          251 LSWNNINGSLESQGLADLPNLKILDLRDC-GMTTI  284 (290)
Q Consensus       251 l~~n~l~~~i~~~~l~~l~~L~~L~L~~n-~l~~~  284 (290)
                      |++|.++ .+|.. +..+++|+.|+|++| +++++
T Consensus       853 Ls~n~i~-~iP~s-i~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        853 LSRTGIE-EVPWW-IEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             CCCCCCc-cChHH-HhcCCCCCEEECCCCCCcCcc
Confidence            6666666 56665 666777777777663 44443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.54  E-value=3.4e-16  Score=142.73  Aligned_cols=179  Identities=31%  Similarity=0.413  Sum_probs=126.2

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCC-CcEEECCCCcCCCCchhh-ccCCCCCCEEEccCCCCCCCcchhhc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQ-LKILDLGCNFFNDSILPY-LNTLTSLTTLILYSNSIEGSGTMQGL  169 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~  169 (290)
                      ...++.|++|+|..|++...++.    .|..... |+.|+.+.|.+.. .|.. =..++.|+.|++.+|.+++...+ .+
T Consensus       306 le~~~sL~tLdL~~N~L~~lp~~----~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l  379 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLPSLPDN----FLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFP-VL  379 (1081)
T ss_pred             ccccceeeeeeehhccccccchH----HHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchh-hh
Confidence            44455666666666665544332    2222222 4444444444432 1211 11356788888888988876554 78


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCE
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA  248 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~  248 (290)
                      ...+.|+.|++++|.   .+.+|...+.++..|++|+|++|+++ +|..+..++.|++|...+|++...+.+..+++|+.
T Consensus       380 ~~~~hLKVLhLsyNr---L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNR---LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccc---cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence            888899999999998   45677778888899999999999998 78888889999999999999988668888999999


Q ss_pred             EeCCCCCCCCcccccccCCCCCCCEEecCCCC
Q 022897          249 LDLSWNNINGSLESQGLADLPNLKILDLRDCG  280 (290)
Q Consensus       249 L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~  280 (290)
                      +|++.|.++....+. .-.-++|++||+++|.
T Consensus       457 lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             Eecccchhhhhhhhh-hCCCcccceeeccCCc
Confidence            999999988433332 2222789999999985

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.52  E-value=1.7e-15  Score=126.37  Aligned_cols=185  Identities=26%  Similarity=0.317  Sum_probs=148.4

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccC-CCCCCCcchhhcccCCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS-NSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L  175 (290)
                      .-.+++|..|.|+..++.    +|+.+++|+.|||++|.++..-|..|.+++.|..|.+.+ |.++. ++...|..+..|
T Consensus        68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHH
Confidence            467899999999999888    999999999999999999999999999999998887777 88875 466789999999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCc-CCCCCCCCcEEEccCCCCCC-----------------
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQ-GLADLPNLKTLDLRDCGITT-----------------  236 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~-----------------  236 (290)
                      +.|.+.-|++   ..+....+..++++..|.+..|.+. ++. .+..+.+++.+.+..|.+..                 
T Consensus       143 qrLllNan~i---~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie  219 (498)
T KOG4237|consen  143 QRLLLNANHI---NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE  219 (498)
T ss_pred             HHHhcChhhh---cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence            9999999995   4555568999999999999999988 444 67777788888777776211                 


Q ss_pred             -----------------------------------------------ccccccCCCCCEEeCCCCCCCCcccccccCCCC
Q 022897          237 -----------------------------------------------IQGLAKLKNLEALDLSWNNINGSLESQGLADLP  269 (290)
Q Consensus       237 -----------------------------------------------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~  269 (290)
                                                                     ...|+.+++|+.|+|++|+++ .|....|.+..
T Consensus       220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a  298 (498)
T KOG4237|consen  220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAA  298 (498)
T ss_pred             cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchh
Confidence                                                           012556677888888888887 45555588888


Q ss_pred             CCCEEecCCCCCcccccccCC
Q 022897          270 NLKILDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       270 ~L~~L~L~~n~l~~~~~~~f~  290 (290)
                      .+++|.|..|+|..+-..+|+
T Consensus       299 ~l~eL~L~~N~l~~v~~~~f~  319 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGMFQ  319 (498)
T ss_pred             hhhhhhcCcchHHHHHHHhhh
Confidence            888888888887766655553

>PLN03210 Resistant to P

Probab=99.51  E-value=5.3e-13  Score=131.82  Aligned_cols=85  Identities=19%  Similarity=0.110  Sum_probs=44.6

Q ss_pred             CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897           93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL  172 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  172 (290)
                      ..+++|+.|+++++.....+|     .+..+++|++|++++|.....+|..+..+++|+.|++++|......+. .+ .+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l  703 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-NL  703 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-CC
Confidence            445566666665544333333     244556666666666554445566666666666666666543333332 11 44


Q ss_pred             CCCCeeeCCCCC
Q 022897          173 RYLQVLDLSWNE  184 (290)
Q Consensus       173 ~~L~~L~l~~n~  184 (290)
                      ++|+.|++++|.
T Consensus       704 ~sL~~L~Lsgc~  715 (1153)
T PLN03210        704 KSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCEEeCCCCC
Confidence            555555555554

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=1.9e-13  Score=127.58  Aligned_cols=164  Identities=22%  Similarity=0.291  Sum_probs=89.0

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      .+|++|++++|.++..+ .    .+.  ..|+.|++++|.+. .+|..+.  .+|+.|++++|.++. ++ ..+.  .+|
T Consensus       220 ~nL~~L~Ls~N~LtsLP-~----~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP-~~l~--~sL  285 (754)
T PRK15370        220 GNIKTLYANSNQLTSIP-A----TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LP-ENLP--EEL  285 (754)
T ss_pred             cCCCEEECCCCccccCC-h----hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cc-cccC--CCC
Confidence            47888888888877542 2    221  24555566555554 3343332  345555555555542 12 1111  244


Q ss_pred             CeeeCCCCCCCCC------------------CccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC
Q 022897          176 QVLDLSWNENITS------------------GSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       176 ~~L~l~~n~~~~~------------------~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~  236 (290)
                      +.|++++|.+...                  ..+|.   .-.++|+.|++++|.++ +|..+  .++|+.|++++|.++.
T Consensus       286 ~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~---~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        286 RYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE---TLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITV  360 (754)
T ss_pred             cEEECCCCccccCcccchhhHHHHHhcCCccccCCc---cccccceeccccCCccccCChhh--cCcccEEECCCCCCCc
Confidence            5555554443111                  11221   11246777777777776 44433  2578888888887776


Q ss_pred             -ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          237 -IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       237 -~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                       |..+  .++|+.|++++|.++ .+|.. +.  ..|+.|++++|++++.
T Consensus       361 LP~~l--p~~L~~LdLs~N~Lt-~LP~~-l~--~sL~~LdLs~N~L~~L  403 (754)
T PRK15370        361 LPETL--PPTITTLDVSRNALT-NLPEN-LP--AALQIMQASRNNLVRL  403 (754)
T ss_pred             CChhh--cCCcCEEECCCCcCC-CCCHh-HH--HHHHHHhhccCCcccC
Confidence             3333  256778888888777 56654 22  2466666666666644

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.42  E-value=5.5e-15  Score=134.98  Aligned_cols=178  Identities=28%  Similarity=0.328  Sum_probs=106.6

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ  176 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  176 (290)
                      +|++++++.|++++.+ +    .+..+.+|+.++...|++. .+|..+....+|+.|.+..|.+.-. + .....++.|+
T Consensus       242 nl~~~dis~n~l~~lp-~----wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p-~~le~~~sL~  313 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLP-E----WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-P-PFLEGLKSLR  313 (1081)
T ss_pred             cceeeecchhhhhcch-H----HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-C-Ccccccceee
Confidence            4555555555554443 2    4455555555555555553 3444444555555555555554321 1 1344456666


Q ss_pred             eeeCCCCCCCCCCccchhhhccCCC-ccEEEcCCCCCCCCcCC--CCCCCCcEEEccCCCCCC--ccccccCCCCCEEeC
Q 022897          177 VLDLSWNENITSGSLTRLGLANLTN-LKELDLRGCGITTSQGL--ADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDL  251 (290)
Q Consensus       177 ~L~l~~n~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~--~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l  251 (290)
                      +|++..|.+   ..+|...+..... |+.|+.+.|++...+..  ...+.|+.|.+.+|.+++  ++.+.++++|++|+|
T Consensus       314 tLdL~~N~L---~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  314 TLDLQSNNL---PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeehhccc---cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            666666663   3444433333332 45555555555422222  234567888888888888  777888888888888


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      ++|++. .+|...+.+++.|++|+||+|+++.++.
T Consensus       391 syNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~  424 (1081)
T KOG0618|consen  391 SYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPD  424 (1081)
T ss_pred             cccccc-cCCHHHHhchHHhHHHhcccchhhhhhH
Confidence            888887 7777777888888888888888887653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=5.5e-12  Score=117.54  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=11.2

Q ss_pred             CCCCcEEECCCCcccCc
Q 022897           95 FEELQSLNLSDNWFRGF  111 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~  111 (290)
                      .++|++|++++|+++..
T Consensus       241 p~~Lk~LdLs~N~LtsL  257 (788)
T PRK15387        241 PPELRTLEVSGNQLTSL  257 (788)
T ss_pred             CCCCcEEEecCCccCcc
Confidence            35677777777776644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=5.7e-13  Score=112.83  Aligned_cols=188  Identities=27%  Similarity=0.284  Sum_probs=123.7

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhc-cCCCCCCEEEccCCCCCCCcchhhc
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-NTLTSLTTLILYSNSIEGSGTMQGL  169 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~  169 (290)
                      ....+++++.|+|+.|-+....+.  .+-...+++|+.|+++.|.+........ ..++.|+.|.++.|.++........
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v--~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~  218 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPV--LKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL  218 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHH--HHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHH
Confidence            456678888888888776544322  2234677888888888887653222211 2467788888888888755455556


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CC--cCCCCCCCCcEEEccCCCCCC---ccc----
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TS--QGLADLPNLKTLDLRDCGITT---IQG----  239 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~---~~~----  239 (290)
                      ..+++|+.|++..|..  .. +.......++.|+.|+|++|.+- .+  .....++.|+.|+++.+.+++   ++.    
T Consensus       219 ~~fPsl~~L~L~~N~~--~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  219 LTFPSLEVLYLEANEI--IL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             HhCCcHHHhhhhcccc--cc-eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence            6778888888888852  21 12224455677888888888776 32  456777888888888888777   333    


Q ss_pred             -cccCCCCCEEeCCCCCCCCcccc-cccCCCCCCCEEecCCCCCccc
Q 022897          240 -LAKLKNLEALDLSWNNINGSLES-QGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       240 -l~~~~~L~~L~l~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                       ...+++|+.|++..|++.+ .+. .-+..+++|++|.+..|+++..
T Consensus       296 kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence             3557788888888888852 222 1144567778888888877654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.31  E-value=2.4e-12  Score=113.60  Aligned_cols=182  Identities=35%  Similarity=0.422  Sum_probs=144.7

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCC-CCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLK-QLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      +..++.++.|++.+|.++...+     ...... +|+.|+++.|.+. .+|..+..++.|+.|++++|+++.. + ....
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~-~~~~  183 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-P-KLLS  183 (394)
T ss_pred             hhcccceeEEecCCcccccCcc-----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-h-hhhh
Confidence            4445678889999988887655     344453 8999999999987 4556678899999999999998763 2 2344


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCC-CCCCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCE
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG-ITTSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEA  248 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~  248 (290)
                      ..+.|+.|++++|.+   ..+|. .......|++|.+++|. +..+..+..+.++..+.+.+|++.. +..++.++.++.
T Consensus       184 ~~~~L~~L~ls~N~i---~~l~~-~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~  259 (394)
T COG4886         184 NLSNLNNLDLSGNKI---SDLPP-EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET  259 (394)
T ss_pred             hhhhhhheeccCCcc---ccCch-hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccce
Confidence            778999999999984   45665 34556669999999994 4577888889999999999999888 778888899999


Q ss_pred             EeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897          249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       249 L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~  288 (290)
                      |++++|.++ .++.  +..+.+++.|++++|.+...+|..
T Consensus       260 L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         260 LDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ecccccccc-cccc--ccccCccCEEeccCccccccchhh
Confidence            999999998 6666  778899999999999998877653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.29  E-value=3.6e-13  Score=109.19  Aligned_cols=132  Identities=34%  Similarity=0.318  Sum_probs=108.4

Q ss_pred             CCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcE
Q 022897          148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKT  226 (290)
Q Consensus       148 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~  226 (290)
                      ..|+++||++|.++..  .++..-++.++.|++++|.+..   +.  .+..+++|+.|+|++|.++ ...+-.++.+++.
T Consensus       284 q~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~~---v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  284 QELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIRT---VQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             hhhhhccccccchhhh--hhhhhhccceeEEeccccceee---eh--hhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            4688999999998752  2456677899999999999633   22  5788899999999999998 4455568889999


Q ss_pred             EEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          227 LDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       227 L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      |.+++|.+.+...+.++-+|..||+++|++...-....++++|.|+++.|.+|++.+++.
T Consensus       357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            999999999999999999999999999998732222338899999999999999988764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=1.7e-12  Score=107.03  Aligned_cols=188  Identities=26%  Similarity=0.290  Sum_probs=115.8

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-------------hccCCCCCCEEEccCCCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-------------YLNTLTSLTTLILYSNSI  160 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~l~~n~~  160 (290)
                      .+++|++|+||+|.+....+..+.+-+..+..|++|.|.+|.+...-..             ....-+.|+++...+|.+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            4556777777777766555544444455667777777777765421111             122345677777777766


Q ss_pred             CCCc---chhhcccCCCCCeeeCCCCCCCCCCc-cchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEcc
Q 022897          161 EGSG---TMQGLANLRYLQVLDLSWNENITSGS-LTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLR  230 (290)
Q Consensus       161 ~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~  230 (290)
                      ....   ....++..+.|+.+.+..|.+...|. +-...+..+++|+.|+|..|.++      ....+..+++|++|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            4321   12345566777777777777644433 22346777788888888888776      34556667778888888


Q ss_pred             CCCCCC------cccc-ccCCCCCEEeCCCCCCCCc---ccccccCCCCCCCEEecCCCCC
Q 022897          231 DCGITT------IQGL-AKLKNLEALDLSWNNINGS---LESQGLADLPNLKILDLRDCGM  281 (290)
Q Consensus       231 ~n~l~~------~~~l-~~~~~L~~L~l~~n~l~~~---i~~~~l~~l~~L~~L~L~~n~l  281 (290)
                      +|.+..      ...+ ...++|++|.+.+|.++..   +........|.|..|+|++|.+
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            887776      1222 2367788888888877621   1111244567788888888877

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=1e-13  Score=120.88  Aligned_cols=177  Identities=28%  Similarity=0.323  Sum_probs=124.1

Q ss_pred             CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCC
Q 022897           95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY  174 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  174 (290)
                      +..-...+++.|++.....     .+..+-.|+.+.++.|.+- .+|..+.++..|.+++|+.|+++-  .+..+..++ 
T Consensus        74 ltdt~~aDlsrNR~~elp~-----~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-  144 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPE-----EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-  144 (722)
T ss_pred             ccchhhhhccccccccCch-----HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-
Confidence            3344556777777765533     3445556666777777665 567777778888888888887764  222444443 


Q ss_pred             CCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCC
Q 022897          175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLS  252 (290)
Q Consensus       175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~  252 (290)
                      |+.|-+++|+   .+.+|. .++....|..|+.+.|.+. .+.-+..+.+|+.|.+..|.+.. |+.+..+ .|..||++
T Consensus       145 Lkvli~sNNk---l~~lp~-~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfS  219 (722)
T KOG0532|consen  145 LKVLIVSNNK---LTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFS  219 (722)
T ss_pred             ceeEEEecCc---cccCCc-ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecc
Confidence            7777777777   445665 6666777888888888776 67777778888888888887777 6666655 47778888


Q ss_pred             CCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897          253 WNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       253 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      .|+++ .||.. |..|..|++|.|.+|.++..+.+
T Consensus       220 cNkis-~iPv~-fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  220 CNKIS-YLPVD-FRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             cCcee-ecchh-hhhhhhheeeeeccCCCCCChHH
Confidence            88887 77777 77888888888888888776653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2e-12  Score=109.62  Aligned_cols=186  Identities=21%  Similarity=0.223  Sum_probs=135.6

Q ss_pred             CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCC--CchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND--SILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      .++.+|+++.|.+..+......   .....+++++.|||+.|-+..  .+.....++|+|+.|+++.|.+........-.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            3577899999988877654432   145678999999999998765  33445568999999999999886533322233


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCCc---cccccCCC
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITTI---QGLAKLKN  245 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~~~~  245 (290)
                      .++.|+.|.+++|.+.. ..+.. ....+|+|+.|++.+|...  ......-+..|++|+|++|++.+.   ...+.++.
T Consensus       195 ~l~~lK~L~l~~CGls~-k~V~~-~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSW-KDVQW-ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhheEEeccCCCCH-HHHHH-HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            56889999999999832 22332 5677899999999999533  223334567899999999999883   45778999


Q ss_pred             CCEEeCCCCCCCCc-cccc----ccCCCCCCCEEecCCCCCcc
Q 022897          246 LEALDLSWNNINGS-LESQ----GLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       246 L~~L~l~~n~l~~~-i~~~----~l~~l~~L~~L~L~~n~l~~  283 (290)
                      |+.|+++.+.+..- +|+.    ....+++|++|+++.|++..
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            99999999988731 1221    12456899999999999843

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=3.4e-12  Score=105.33  Aligned_cols=216  Identities=23%  Similarity=0.288  Sum_probs=154.6

Q ss_pred             cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccch-------hhhhhcCCCCCCcEEECCCC
Q 022897           62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN-------KAYDSFGSLKQLKILDLGCN  134 (290)
Q Consensus        62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~~l~~l~~L~~L~l~~n  134 (290)
                      ...++.++|+++.    +.......+ ...+.+.++|++.++++- ++|....       .+.+++-.+++|++|+||.|
T Consensus        29 ~~s~~~l~lsgnt----~G~EAa~~i-~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   29 MDSLTKLDLSGNT----FGTEAARAI-AKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             cCceEEEeccCCc----hhHHHHHHH-HHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            4568899999988    332222222 234566678999988764 4444322       23456677889999999999


Q ss_pred             cCCCCchh----hccCCCCCCEEEccCCCCCCCc------------chhhcccCCCCCeeeCCCCCCCCCCccc-hhhhc
Q 022897          135 FFNDSILP----YLNTLTSLTTLILYSNSIEGSG------------TMQGLANLRYLQVLDLSWNENITSGSLT-RLGLA  197 (290)
Q Consensus       135 ~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~  197 (290)
                      .+....++    .+..+..|++|.|.+|.+....            ..+....-++|+++....|.+-+.+... ...+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            98655444    3456899999999999875221            1123444578999999999974443221 23567


Q ss_pred             cCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCcc----c
Q 022897          198 NLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSL----E  261 (290)
Q Consensus       198 ~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i----~  261 (290)
                      ..+.|+.+.+..|.+.      ...++..+++|+.|+|.+|-++.      ...+..+++|+.|++++|.+...-    .
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            7789999999999987      23567889999999999999987      345778899999999999987432    2


Q ss_pred             ccccCCCCCCCEEecCCCCCcc
Q 022897          262 SQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       262 ~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      ..+-...|+|+.|.+.+|.|+.
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHHhccCCCCceeccCcchhHH
Confidence            2323457899999999999874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=1.2e-11  Score=95.29  Aligned_cols=121  Identities=34%  Similarity=0.370  Sum_probs=34.5

Q ss_pred             CCCCcEEECCCCcCCCCchhhcc-CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897          123 LKQLKILDLGCNFFNDSILPYLN-TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN  201 (290)
Q Consensus       123 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  201 (290)
                      ...+++|+|.+|.++.  .+.++ .+.+|+.|++++|.++..   +.+..++.|++|++++|.+.   .+.......+++
T Consensus        18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~---~i~~~l~~~lp~   89 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRIS---SISEGLDKNLPN   89 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS------S-CHHHHHH-TT
T ss_pred             cccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCC---ccccchHHhCCc
Confidence            3345555555555542  12233 345555666666655531   23455566666666666542   222211134556


Q ss_pred             ccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC-----ccccccCCCCCEEeC
Q 022897          202 LKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT-----IQGLAKLKNLEALDL  251 (290)
Q Consensus       202 L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~-----~~~l~~~~~L~~L~l  251 (290)
                      |++|++++|++.   ....+..+++|+.|++.+|.++.     .-.+..+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            666666666655   22334455666666666666654     223556677777763

>PLN03150 hypothetical protein; Provisional

Probab=99.12  E-value=3.2e-10  Score=105.20  Aligned_cols=109  Identities=29%  Similarity=0.412  Sum_probs=94.4

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ  176 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  176 (290)
                      .++.|+|++|.+.+..+.    .+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.++ ..+..+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCC
Confidence            478899999999988887    88999999999999999999999999999999999999999998766 4789999999


Q ss_pred             eeeCCCCCCCCCCccchhhhcc-CCCccEEEcCCCCCC
Q 022897          177 VLDLSWNENITSGSLTRLGLAN-LTNLKELDLRGCGIT  213 (290)
Q Consensus       177 ~L~l~~n~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~  213 (290)
                      +|++++|.+  .+.+|. .+.. ..++..+++.+|...
T Consensus       494 ~L~Ls~N~l--~g~iP~-~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        494 ILNLNGNSL--SGRVPA-ALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             EEECcCCcc--cccCCh-HHhhccccCceEEecCCccc
Confidence            999999998  788887 4544 346778888888654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=1.5e-10  Score=89.27  Aligned_cols=126  Identities=35%  Similarity=0.387  Sum_probs=47.2

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcC-CCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc-cc
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFG-SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL-AN  171 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~  171 (290)
                      +..++++|+|.+|.++..-      .++ .+.+|+.|++++|.++..  +.+..++.|++|++++|.++....  .+ ..
T Consensus        17 n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~--~l~~~   86 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE--GLDKN   86 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH--HHHHH
T ss_pred             ccccccccccccccccccc------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc--chHHh
Confidence            4456788888888876542      344 467888888888888642  346677888888888888875321  23 35


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C----CcCCCCCCCCcEEEccC
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T----SQGLADLPNLKTLDLRD  231 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~----~~~~~~l~~L~~L~l~~  231 (290)
                      +++|++|++++|.+.+...+.  .+..+++|+.|++.+|.++ .    ...+..+++|+.||-..
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            788888888888875555553  5677888888888888876 1    12345677888776543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=1.8e-11  Score=99.53  Aligned_cols=130  Identities=35%  Similarity=0.374  Sum_probs=108.6

Q ss_pred             CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCC
Q 022897          121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT  200 (290)
Q Consensus       121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  200 (290)
                      ...+.|+++|+++|.++ .+-++..-.|.++.|++++|.+...   ..+..+++|..|++++|.+.   .+.. .-..+-
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls---~~~G-wh~KLG  352 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLA---ECVG-WHLKLG  352 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhH---hhhh-hHhhhc
Confidence            34577999999999987 4556667789999999999999753   35888999999999999863   2332 334667


Q ss_pred             CccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC---ccccccCCCCCEEeCCCCCCCC
Q 022897          201 NLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT---IQGLAKLKNLEALDLSWNNING  258 (290)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~  258 (290)
                      +++.|.|++|.+.....+.++.+|..|++++|+|..   ...++++|.|+++.|.+|.+.+
T Consensus       353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             CEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            889999999999877788899999999999999988   6678999999999999999984

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=2.6e-10  Score=100.70  Aligned_cols=173  Identities=36%  Similarity=0.493  Sum_probs=138.1

Q ss_pred             EEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCC-CCCEEEccCCCCCCCcchhhcccCCCCCee
Q 022897          100 SLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLT-SLTTLILYSNSIEGSGTMQGLANLRYLQVL  178 (290)
Q Consensus       100 ~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  178 (290)
                      .+.+..+.+.....     .+..++.++.|++.+|.++ .+++...... +|+.|++++|.+...  +..+..+++|+.|
T Consensus        97 ~l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L  168 (394)
T COG4886          97 SLDLNLNRLRSNIS-----ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNL  168 (394)
T ss_pred             eeeccccccccCch-----hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh--hhhhhcccccccc
Confidence            57777777644333     3455688999999999998 4566666664 999999999999752  2367889999999


Q ss_pred             eCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCC-CCCccccccCCCCCEEeCCCCCC
Q 022897          179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCG-ITTIQGLAKLKNLEALDLSWNNI  256 (290)
Q Consensus       179 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l  256 (290)
                      +++.|++   ..++. .....+.|+.|++++|+++ ++..+.....|++|.+++|. +..+..+..+..+..+.+.+|++
T Consensus       169 ~l~~N~l---~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         169 DLSFNDL---SDLPK-LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             ccCCchh---hhhhh-hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence            9999995   34554 4448899999999999999 66655677789999999994 55588889999999999999998


Q ss_pred             CCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          257 NGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       257 ~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      . .++.. ++.+++++.|++++|.++.+.+
T Consensus       245 ~-~~~~~-~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         245 E-DLPES-IGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             e-eccch-hccccccceecccccccccccc
Confidence            7 44444 7888999999999999988764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1e-11  Score=100.73  Aligned_cols=176  Identities=26%  Similarity=0.278  Sum_probs=131.7

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCC-CCCCcchhhcccCCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNS-IEGSGTMQGLANLRYL  175 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L  175 (290)
                      .|+.+||++..++...   +-..+..+.+|+.|.|.++.+.+.+...+.....|+.|+++.|. ++.....-.+.+++.|
T Consensus       186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            5899999988876542   22256788999999999999999888999999999999999874 5554444467889999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccC-CCccEEEcCCCCCC-----CCcCCCCCCCCcEEEccCCC-CCC--ccccccCCCC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANL-TNLKELDLRGCGIT-----TSQGLADLPNLKTLDLRDCG-ITT--IQGLAKLKNL  246 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~-l~~--~~~l~~~~~L  246 (290)
                      ..|++++|.+  ........+.+. ++|+.|+++++.-.     ..--...+++|.+||+++|. ++.  ...+.+++.|
T Consensus       263 ~~LNlsWc~l--~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  263 DELNLSWCFL--FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hhcCchHhhc--cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            9999999987  333332233333 57889999987533     11223578899999999885 443  6667788999


Q ss_pred             CEEeCCCCCCCCccccc--ccCCCCCCCEEecCCC
Q 022897          247 EALDLSWNNINGSLESQ--GLADLPNLKILDLRDC  279 (290)
Q Consensus       247 ~~L~l~~n~l~~~i~~~--~l~~l~~L~~L~L~~n  279 (290)
                      ++|.++.|...  +|..  .+...|+|.+|++.++
T Consensus       341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            99999999754  3332  2677899999998776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.96  E-value=1.3e-11  Score=107.90  Aligned_cols=156  Identities=30%  Similarity=0.392  Sum_probs=132.6

Q ss_pred             CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCC
Q 022897          121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT  200 (290)
Q Consensus       121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  200 (290)
                      ..+..-...|++.|++. .+|..+..+-.|+.+.++.|.+..  .+..+..+..|.+++++.|++   ..+|. .+..++
T Consensus        72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~Nql---S~lp~-~lC~lp  144 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQL---SHLPD-GLCDLP  144 (722)
T ss_pred             ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchh---hcCCh-hhhcCc
Confidence            34555667899999997 688888888899999999998874  334788999999999999995   45665 555555


Q ss_pred             CccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCC
Q 022897          201 NLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD  278 (290)
Q Consensus       201 ~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~  278 (290)
                       |+.|-+++|+++ .|+.++...+|..|+.+.|++.. +..+..+.+|+.|.+..|++. .+|.+ +..++ |..||+++
T Consensus       145 -Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E-l~~Lp-Li~lDfSc  220 (722)
T KOG0532|consen  145 -LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE-LCSLP-LIRLDFSC  220 (722)
T ss_pred             -ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH-HhCCc-eeeeeccc
Confidence             899999999999 89999999999999999999998 888999999999999999998 78888 66666 89999999


Q ss_pred             CCCcccccc
Q 022897          279 CGMTTIQGK  287 (290)
Q Consensus       279 n~l~~~~~~  287 (290)
                      |+++.+|-.
T Consensus       221 Nkis~iPv~  229 (722)
T KOG0532|consen  221 NKISYLPVD  229 (722)
T ss_pred             Cceeecchh
Confidence            999988754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=8.5e-10  Score=70.15  Aligned_cols=59  Identities=42%  Similarity=0.703  Sum_probs=46.5

Q ss_pred             CCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCC
Q 022897          222 PNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGM  281 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l  281 (290)
                      ++|++|++++|.++.  +..+..+++|++|++++|.++ .+++..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            467788888888877  346778888888888888887 67766688888888888888875

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.89  E-value=2.7e-10  Score=101.12  Aligned_cols=177  Identities=36%  Similarity=0.471  Sum_probs=94.3

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      +..+.+|+.|++.+|.+.....     .+..+++|++|++++|.++..  ..+..++.|+.|++++|.+...   ..+..
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~---~~~~~  160 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI---SGLES  160 (414)
T ss_pred             cccccceeeeeccccchhhccc-----chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc---cCCcc
Confidence            4445566666666666654432     144556666666666666532  2234445566666666666532   23444


Q ss_pred             CCCCCeeeCCCCCCCCCCccch-hhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCC--CCE
Q 022897          172 LRYLQVLDLSWNENITSGSLTR-LGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKN--LEA  248 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~--L~~  248 (290)
                      ++.|+.+++++|.+.   .+.. . ...+.+++.+.+.+|.+.....+..+..+..+++..|.++....+..+..  |+.
T Consensus       161 l~~L~~l~l~~n~i~---~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~  236 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIV---DIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRE  236 (414)
T ss_pred             chhhhcccCCcchhh---hhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHH
Confidence            566666666666541   1221 0 34555566666666655544444444444444555555544333333333  677


Q ss_pred             EeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       249 L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      +++++|.+. .++.. +..+..+..+++.+|++...
T Consensus       237 l~l~~n~i~-~~~~~-~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  237 LYLSGNRIS-RSPEG-LENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             HhcccCccc-ccccc-ccccccccccchhhcccccc
Confidence            777777766 34322 55566677777777766543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.86  E-value=4e-09  Score=61.65  Aligned_cols=41  Identities=39%  Similarity=0.764  Sum_probs=29.9

Q ss_pred             cHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCC--CCCCCCCCceEec
Q 022897            8 LETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMP--SDCCDDWEGVKCN   59 (290)
Q Consensus         8 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~--~~~c~~w~gv~c~   59 (290)
                      +++|++||++||+++..  +.   ...+.+|..     .  .++| +|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~--~~---~~~l~~W~~-----~~~~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNN--DP---SGVLSSWNP-----SSDSDPC-SWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT---SC----CCCTT--T-----T--S-CC-CSTTEEE-
T ss_pred             CcHHHHHHHHHHHhccc--cc---CcccccCCC-----cCCCCCe-eeccEEeC
Confidence            36899999999999996  42   578999997     4  6888 99999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.6e-09  Score=68.86  Aligned_cols=61  Identities=31%  Similarity=0.380  Sum_probs=43.4

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSI  160 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  160 (290)
                      ++|++|++++|.+....+.    .|..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4577777777777766555    667777777777777777765566677777777777777653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=7.6e-10  Score=98.25  Aligned_cols=174  Identities=35%  Similarity=0.411  Sum_probs=134.7

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      .+..++.+.+..|.+.....     .+..+++|+.|++..|.+.. +...+..+++|++|++++|.++..   ..+..++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL---EGLSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc---cchhhcc
Confidence            45667777788887765211     47889999999999999974 333367799999999999999864   2567777


Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcC--CCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG--LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL  251 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l  251 (290)
                      .|+.|++.+|.+..   +.  .+..++.|+.+++++|.+.....  ...+.+++.+.+.+|.+..+..+.....+..+++
T Consensus       141 ~L~~L~l~~N~i~~---~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l  215 (414)
T KOG0531|consen  141 LLKELNLSGNLISD---IS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSL  215 (414)
T ss_pred             chhhheeccCcchh---cc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhc
Confidence            89999999999633   33  45568899999999999984444  5888999999999999999888777777888899


Q ss_pred             CCCCCCCcccccccCCCCC--CCEEecCCCCCccc
Q 022897          252 SWNNINGSLESQGLADLPN--LKILDLRDCGMTTI  284 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~--L~~L~L~~n~l~~~  284 (290)
                      ..|.++ .+-.  +..+..  |+.+++++|.+...
T Consensus       216 ~~n~i~-~~~~--l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  216 LDNKIS-KLEG--LNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             ccccce-eccC--cccchhHHHHHHhcccCccccc
Confidence            999887 3322  223333  89999999998864

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.71  E-value=8.8e-09  Score=82.90  Aligned_cols=217  Identities=21%  Similarity=0.192  Sum_probs=132.0

Q ss_pred             cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchh-------hhhhcCCCCCCcEEECCCC
Q 022897           62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENK-------AYDSFGSLKQLKILDLGCN  134 (290)
Q Consensus        62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------~~~~l~~l~~L~~L~l~~n  134 (290)
                      ...++.++|+|+.    +....+..+. ..+.+-.+|+..++++-. +|...+.       +..++-+|+.|+..+||.|
T Consensus        29 ~d~~~evdLSGNt----igtEA~e~l~-~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          29 MDELVEVDLSGNT----IGTEAMEELC-NVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             hcceeEEeccCCc----ccHHHHHHHH-HHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            4457788888877    3322222222 235556777777776542 3322221       2345667888888888888


Q ss_pred             cCCCCchh----hccCCCCCCEEEccCCCCCCC---cch---------hhcccCCCCCeeeCCCCCCCCCCc-cchhhhc
Q 022897          135 FFNDSILP----YLNTLTSLTTLILYSNSIEGS---GTM---------QGLANLRYLQVLDLSWNENITSGS-LTRLGLA  197 (290)
Q Consensus       135 ~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~---~~~---------~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~  197 (290)
                      .+....|+    .++.-..|++|.+++|.+...   -..         .....-+.|+.+....|.+..... .....+.
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence            87655554    345667888888888876421   111         122344678888888887622111 1111233


Q ss_pred             cCCCccEEEcCCCCCC-------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCcccccc
Q 022897          198 NLTNLKELDLRGCGIT-------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSLESQG  264 (290)
Q Consensus       198 ~~~~L~~L~l~~n~l~-------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~~  264 (290)
                      .-..|+.+.+..|.+.       ....+..+.+|+.|++.+|-++-      ...+...+.|+.|.+..|-++..-....
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            3357888888888776       12344567788888888888775      2345666778888888888774433322


Q ss_pred             cC-----CCCCCCEEecCCCCCccc
Q 022897          265 LA-----DLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       265 l~-----~l~~L~~L~L~~n~l~~~  284 (290)
                      +.     ..|+|..|...+|.+.+-
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HHHhhhhcCCCccccccchhhhcCc
Confidence            21     247788888888876653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=5.9e-09  Score=84.88  Aligned_cols=182  Identities=19%  Similarity=0.267  Sum_probs=117.6

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      .+..+++++|.+|.++.-.  .+...+.++|.|++|+|+.|.+...+-..-....+|+.|.|.+..+......+.+..++
T Consensus        69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            4567888999999887542  22224578899999999999887543222235678889999888876554445667778


Q ss_pred             CCCeeeCCCCCCC---CCCccch----------------h-------hhccCCCccEEEcCCCCCC---CCcCCCCCCCC
Q 022897          174 YLQVLDLSWNENI---TSGSLTR----------------L-------GLANLTNLKELDLRGCGIT---TSQGLADLPNL  224 (290)
Q Consensus       174 ~L~~L~l~~n~~~---~~~~~~~----------------~-------~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L  224 (290)
                      .+++|+++.|.+.   .......                .       ....++++..+-+..|.+.   ..+....++.+
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence            8888888877421   0100000                0       0122456666666666544   33445556677


Q ss_pred             cEEEccCCCCCC---ccccccCCCCCEEeCCCCCCCCccccc-----ccCCCCCCCEEecC
Q 022897          225 KTLDLRDCGITT---IQGLAKLKNLEALDLSWNNINGSLESQ-----GLADLPNLKILDLR  277 (290)
Q Consensus       225 ~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~~i~~~-----~l~~l~~L~~L~L~  277 (290)
                      ..|+++.++|.+   .+.+..+++|+.|.++++.+.+.+-..     .++.+++++.|+=+
T Consensus       227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            788888888877   566777888888888888887544321     25667777776533

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.68  E-value=4e-10  Score=101.47  Aligned_cols=127  Identities=31%  Similarity=0.334  Sum_probs=81.1

Q ss_pred             CCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCC-CCCCCcEE
Q 022897          149 SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLA-DLPNLKTL  227 (290)
Q Consensus       149 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~l~~L~~L  227 (290)
                      .|...++++|.+..  ....+.-++.|+.|+|++|++..   +.  .+..++.|++|+|++|.+...+.+. .-.+|..|
T Consensus       165 ~L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~---v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L  237 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTK---VD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL  237 (1096)
T ss_pred             hHhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhh---hH--HHHhcccccccccccchhccccccchhhhhheee
Confidence            45556666666543  22356666777777777777522   22  5667777777777777777322222 12247777


Q ss_pred             EccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897          228 DLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT  282 (290)
Q Consensus       228 ~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  282 (290)
                      .+++|.++..-.+.++.+|+.||+++|-+.+.-.-.++..+..|+.|.|.+|++-
T Consensus       238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777777777777777777788888777765333333555667777777777663

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.65  E-value=1.9e-08  Score=95.96  Aligned_cols=180  Identities=27%  Similarity=0.333  Sum_probs=114.7

Q ss_pred             CCCCcEEECCCCc--ccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897           95 FEELQSLNLSDNW--FRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL  172 (290)
Q Consensus        95 ~~~L~~L~l~~n~--l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  172 (290)
                      .++|++|-+..|.  +......    .|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+..  .|..+..+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~L  617 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNL  617 (889)
T ss_pred             CCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHH
Confidence            4468888888775  3333222    47889999999999888777899999999999999999998873  44688899


Q ss_pred             CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC----CCcCCCCCCCCcEEEccCCCCCCccccccCCCCC-
Q 022897          173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT----TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLE-  247 (290)
Q Consensus       173 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~-  247 (290)
                      +.|.+|++..+..  ...++. ....+++|++|.+......    ....+..+.+|+.+............+..+..|+ 
T Consensus       618 k~L~~Lnl~~~~~--l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~  694 (889)
T KOG4658|consen  618 KKLIYLNLEVTGR--LESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS  694 (889)
T ss_pred             Hhhheeccccccc--cccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH
Confidence            9999999988775  333433 5566889999988776533    2233445555555555433331112222222222 


Q ss_pred             ---EEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          248 ---ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       248 ---~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                         .+.+..+... ..+.. +..+.+|+.|.+.++.+..+.
T Consensus       695 ~~~~l~~~~~~~~-~~~~~-~~~l~~L~~L~i~~~~~~e~~  733 (889)
T KOG4658|consen  695 LLQSLSIEGCSKR-TLISS-LGSLGNLEELSILDCGISEIV  733 (889)
T ss_pred             HhHhhhhcccccc-eeecc-cccccCcceEEEEcCCCchhh
Confidence               2222222222 23333 667778888888888776543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=3.3e-09  Score=86.34  Aligned_cols=161  Identities=20%  Similarity=0.138  Sum_probs=117.2

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCCCc-hhhccCCCCCCEEEccCCCCCCCcchhh
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FNDSI-LPYLNTLTSLTTLILYSNSIEGSGTMQG  168 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (290)
                      .+..+.+|+.|.+.++.+...+..    .+.+..+|+.|+|+.+. ++... .-.+..++.|..|++++|.+........
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~  280 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA  280 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence            356788999999999999887766    78899999999998764 44322 2235689999999999999876543322


Q ss_pred             ccc-CCCCCeeeCCCCCCCCC-CccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCCcc---cc
Q 022897          169 LAN-LRYLQVLDLSWNENITS-GSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITTIQ---GL  240 (290)
Q Consensus       169 ~~~-l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~~~---~l  240 (290)
                      ..+ -.+|..|+++++.-.-. ..+. .....+++|.+|+|+.|...   ....+.+++.|++|.++.|....|.   .+
T Consensus       281 V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l  359 (419)
T KOG2120|consen  281 VAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL  359 (419)
T ss_pred             HhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeee
Confidence            332 25788899988752101 1222 24567899999999998654   3345678899999999999766643   46


Q ss_pred             ccCCCCCEEeCCCCCC
Q 022897          241 AKLKNLEALDLSWNNI  256 (290)
Q Consensus       241 ~~~~~L~~L~l~~n~l  256 (290)
                      ...|+|.+|++.++--
T Consensus       360 ~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ccCcceEEEEeccccC
Confidence            7788999999877643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=2.8e-08  Score=81.00  Aligned_cols=176  Identities=21%  Similarity=0.205  Sum_probs=119.6

Q ss_pred             CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhc-CCCCCCcEEECCCCcCCCC-c
Q 022897           63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSF-GSLKQLKILDLGCNFFNDS-I  140 (290)
Q Consensus        63 ~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~-~  140 (290)
                      .+|..+||.++. +..+..      ....+.++|.|+.|+++.|.+...+.     .+ -...+|++|-|.+..+.-. .
T Consensus        71 ~~v~elDL~~N~-iSdWse------I~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~nl~~lVLNgT~L~w~~~  138 (418)
T KOG2982|consen   71 TDVKELDLTGNL-ISDWSE------IGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLKNLRVLVLNGTGLSWTQS  138 (418)
T ss_pred             hhhhhhhcccch-hccHHH------HHHHHhcCccceEeeccCCcCCCccc-----cCcccccceEEEEEcCCCCChhhh
Confidence            357777777776 222211      12457789999999999999987665     34 3678999999988876432 2


Q ss_pred             hhhccCCCCCCEEEccCCCCCCC---------cch-------------------hhcccCCCCCeeeCCCCCCCCCCccc
Q 022897          141 LPYLNTLTSLTTLILYSNSIEGS---------GTM-------------------QGLANLRYLQVLDLSWNENITSGSLT  192 (290)
Q Consensus       141 ~~~l~~l~~L~~L~l~~n~~~~~---------~~~-------------------~~~~~l~~L~~L~l~~n~~~~~~~~~  192 (290)
                      -..+..+|.+++|.++.|.+...         ..+                   ..-.-++++..+.+..|.+.+...  
T Consensus       139 ~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~--  216 (418)
T KOG2982|consen  139 TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS--  216 (418)
T ss_pred             hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh--
Confidence            34456788888998888843210         000                   001124566777777776533222  


Q ss_pred             hhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCCc--------cccccCCCCCEEeCC
Q 022897          193 RLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITTI--------QGLAKLKNLEALDLS  252 (290)
Q Consensus       193 ~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~~--------~~l~~~~~L~~L~l~  252 (290)
                      ...+..++.+..|+|+.+++.   ..+.+.+++.|..|.++.+.+.++        -.++.+++++.|+=+
T Consensus       217 ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  217 EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            125677788889999999987   466788999999999999998872        236778888888744

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.41  E-value=9.4e-08  Score=89.10  Aligned_cols=147  Identities=24%  Similarity=0.297  Sum_probs=96.0

Q ss_pred             CCCcEEECCCCcCC-CCchhhcc-CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897          124 KQLKILDLGCNFFN-DSILPYLN-TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN  201 (290)
Q Consensus       124 ~~L~~L~l~~n~l~-~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  201 (290)
                      .+|++|++++.... ..=|..++ .+|+|+.|.+++-.+..........++++|..||+++..+   ..+  ..++++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNL--SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCc--HHHhcccc
Confidence            67888888775432 22223333 4788888888887765544445667788888888888774   233  26778888


Q ss_pred             ccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--------ccccccCCCCCEEeCCCCCCCCcccccccCCCCC
Q 022897          202 LKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--------IQGLAKLKNLEALDLSWNNINGSLESQGLADLPN  270 (290)
Q Consensus       202 L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~  270 (290)
                      |+.|.+.+=.+.   ....+..+++|+.||+|......        .+.-..+|.|+.||.|++.+.+.+-...+...++
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            888877665554   22356678888888888776555        2233447788888888887776655544445555


Q ss_pred             CCEEe
Q 022897          271 LKILD  275 (290)
Q Consensus       271 L~~L~  275 (290)
                      |+.+.
T Consensus       277 L~~i~  281 (699)
T KOG3665|consen  277 LQQIA  281 (699)
T ss_pred             Hhhhh
Confidence            55444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=2.5e-09  Score=96.48  Aligned_cols=159  Identities=25%  Similarity=0.272  Sum_probs=117.6

Q ss_pred             cCCCCCCCcEEECCCCcccCccch-hh----------------hh-------hcC---CCCCCcEEECCCCcCCCCchhh
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYEN-KA----------------YD-------SFG---SLKQLKILDLGCNFFNDSILPY  143 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~-~~----------------~~-------~l~---~l~~L~~L~l~~n~l~~~~~~~  143 (290)
                      .+..|..|+.|.+.++.+.....- .+                .+       .+.   ....|.+.++++|.+. .+-.+
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~S  182 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDES  182 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHH
Confidence            456788899999988887542100 00                00       010   1134566677777765 34456


Q ss_pred             ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCC
Q 022897          144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPN  223 (290)
Q Consensus       144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~  223 (290)
                      +.-++.|+.|+|+.|+++..   ..+..++.|++|||+.|.+   ..+|......+ +|+.|.+.+|.++....+.++.+
T Consensus       183 Lqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L---~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~Lks  255 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCL---RHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKS  255 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchh---ccccccchhhh-hheeeeecccHHHhhhhHHhhhh
Confidence            66788999999999999863   3788999999999999995   44554233333 49999999999997778889999


Q ss_pred             CcEEEccCCCCCC---ccccccCCCCCEEeCCCCCCC
Q 022897          224 LKTLDLRDCGITT---IQGLAKLKNLEALDLSWNNIN  257 (290)
Q Consensus       224 L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~  257 (290)
                      |+.||+++|-+.+   ...+..+..|+.|+|.+|.+-
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999999999888   556777888999999999886

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=6e-07  Score=52.50  Aligned_cols=38  Identities=47%  Similarity=0.719  Sum_probs=19.9

Q ss_pred             CCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          245 NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       245 ~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      +|++|++++|.++ .+|+. ++.+++|+.|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCc-ccCch-HhCCCCCCEEEecCCCCCCC
Confidence            4555555555555 45544 55555555555555555543

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.33  E-value=2e-07  Score=75.29  Aligned_cols=193  Identities=23%  Similarity=0.240  Sum_probs=138.3

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh-------------ccCCCCCCEEEccC
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-------------LNTLTSLTTLILYS  157 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~  157 (290)
                      .+-+||+|++++|++|.+....+..+.+.++.-..|.+|.+++|.+.......             ...-|.|+.+....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            45679999999999999998888877778889999999999999874322111             12457899999999


Q ss_pred             CCCCCCcc---hhhcccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcE
Q 022897          158 NSIEGSGT---MQGLANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKT  226 (290)
Q Consensus       158 n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~  226 (290)
                      |.+.....   ...+..-..|+++.+..|.+...|  .+....+..+.+|+.|++..|.++      ...++...+.|++
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            98753211   112333368999999999974442  122234567789999999999988      2345556677999


Q ss_pred             EEccCCCCCC--c----ccc--ccCCCCCEEeCCCCCCCCcc------cccccCCCCCCCEEecCCCCCcc
Q 022897          227 LDLRDCGITT--I----QGL--AKLKNLEALDLSWNNINGSL------ESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       227 L~l~~n~l~~--~----~~l--~~~~~L~~L~l~~n~l~~~i------~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      |.+.+|-++.  .    ..+  ...++|..|...+|..-+.+      +...-..+|-|..|.+.+|.|..
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            9999998876  1    222  23678999999999776432      22223456777888888888765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=3.2e-07  Score=87.77  Aligned_cols=95  Identities=26%  Similarity=0.201  Sum_probs=77.4

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (290)
                      ....+..+|..++.|+.||+++|.--+..|.    .++.+-+|++|+++.+.+. .+|..+.++..|.+|++..+.....
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~  633 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLES  633 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccc
Confidence            3445566788999999999998766555565    8899999999999999998 7899999999999999999876544


Q ss_pred             cchhhcccCCCCCeeeCCCCC
Q 022897          164 GTMQGLANLRYLQVLDLSWNE  184 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~  184 (290)
                      . +.....+++|++|.+....
T Consensus       634 ~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  634 I-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             c-cchhhhcccccEEEeeccc
Confidence            4 3355668999999987664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.25  E-value=9.1e-07  Score=82.65  Aligned_cols=135  Identities=25%  Similarity=0.325  Sum_probs=103.0

Q ss_pred             CCCCEEEccCCCCCCCcchhh-cccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcE
Q 022897          148 TSLTTLILYSNSIEGSGTMQG-LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKT  226 (290)
Q Consensus       148 ~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~  226 (290)
                      .+|++|++++...-....+.. -..+|.|+.|.+.+-.+... ... ....++++|..||+++.+++....++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~-~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFS-QLCASFPNLRSLDISGTNISNLSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHH-HHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence            579999999875443333333 34679999999998776322 222 367889999999999999997788999999999


Q ss_pred             EEccCCCCCC---ccccccCCCCCEEeCCCCCCCCc--cccc---ccCCCCCCCEEecCCCCCccc
Q 022897          227 LDLRDCGITT---IQGLAKLKNLEALDLSWNNINGS--LESQ---GLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       227 L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~~--i~~~---~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      |.+.+=.+..   ...+..+++|++||+|.......  +...   --..+|+|+.||.|+..+++.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            9999988887   45678899999999999876532  1211   134589999999999887754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.16  E-value=7.3e-08  Score=69.85  Aligned_cols=130  Identities=22%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             CCEEEccCCCCCCC-cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEE
Q 022897          150 LTTLILYSNSIEGS-GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTL  227 (290)
Q Consensus       150 L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L  227 (290)
                      +..++|+.|++--. .....+.....|...++++|.+   ..+|......++.++.|+|++|.++ .|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            45566777765310 0112334445666677777774   3455544455567777777777777 66667777777777


Q ss_pred             EccCCCCCC-ccccccCCCCCEEeCCCCCCCCccccccc-CCCCCCCEEecCCCCCcccc
Q 022897          228 DLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGL-ADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       228 ~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l-~~l~~L~~L~L~~n~l~~~~  285 (290)
                      +++.|.+.. +..+..+.++-.|+..+|.+- ++|...+ +..+.  ..++.++.+.+.-
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~a--l~~lgnepl~~~~  162 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPA--LIKLGNEPLGDET  162 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHH--HHHhcCCcccccC
Confidence            777777776 555555777777777777665 5655422 22222  2333555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=4e-06  Score=49.03  Aligned_cols=39  Identities=44%  Similarity=0.591  Sum_probs=26.6

Q ss_pred             CCCcEEEccCCCCCCccc-cccCCCCCEEeCCCCCCCCccc
Q 022897          222 PNLKTLDLRDCGITTIQG-LAKLKNLEALDLSWNNINGSLE  261 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~~i~  261 (290)
                      ++|++|++++|+|++.+. +.++++|+.|++++|+++ .++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            367777777777777444 777888888888888777 444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.15  E-value=3.4e-06  Score=65.28  Aligned_cols=81  Identities=31%  Similarity=0.312  Sum_probs=37.5

Q ss_pred             CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCe
Q 022897           98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV  177 (290)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  177 (290)
                      ...++|++|.+....      .|..++.|+.|.+++|.++...|.--.-+++|..|.+.+|.+.....-..+..+++|++
T Consensus        44 ~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            444555555543221      34455555555555555554333332334455555555555443222223444445555


Q ss_pred             eeCCCCC
Q 022897          178 LDLSWNE  184 (290)
Q Consensus       178 L~l~~n~  184 (290)
                      |.+-+|.
T Consensus       118 Ltll~Np  124 (233)
T KOG1644|consen  118 LTLLGNP  124 (233)
T ss_pred             eeecCCc
Confidence            5554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=1.4e-05  Score=69.44  Aligned_cols=135  Identities=13%  Similarity=0.132  Sum_probs=73.8

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      .+.+++.|++++|.+...+      .+  ..+|++|.++++.-...+|..+  .++|++|++++|......|       .
T Consensus        50 ~~~~l~~L~Is~c~L~sLP------~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~  112 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP------VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------E  112 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC------CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------c
Confidence            3466778888877665432      11  2358888887654333455444  2578888888773222222       3


Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCC--CCCCCCcEEEccCCCCCC-ccccccCCCCCEEe
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGL--ADLPNLKTLDLRDCGITT-IQGLAKLKNLEALD  250 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~  250 (290)
                      .|+.|++..+.....+.+|.       +|+.|.+.++.......+  .-.++|++|.+++|.... |+.+.  .+|+.|+
T Consensus       113 sLe~L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~  183 (426)
T PRK15386        113 SVRSLEIKGSATDSIKNVPN-------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSIT  183 (426)
T ss_pred             ccceEEeCCCCCcccccCcc-------hHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence            46777776655432333332       456666644321111001  112577888887776554 33333  4677777


Q ss_pred             CCCC
Q 022897          251 LSWN  254 (290)
Q Consensus       251 l~~n  254 (290)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            7665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=1.8e-07  Score=67.82  Aligned_cols=135  Identities=21%  Similarity=0.187  Sum_probs=99.0

Q ss_pred             CCCCCcEEECCCCcCCCCchh---hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897          122 SLKQLKILDLGCNFFNDSILP---YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN  198 (290)
Q Consensus       122 ~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  198 (290)
                      .-..+..++|+.+.+. .+++   .+.....|...+|++|.+.. .+++.-...+.++.|++++|.+   ..+|. .+..
T Consensus        25 dakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~nei---sdvPe-E~Aa   98 (177)
T KOG4579|consen   25 DAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEI---SDVPE-ELAA   98 (177)
T ss_pred             HHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhh---hhchH-HHhh
Confidence            3456788899998774 2333   44566778888999999975 3443444556899999999994   56887 6999


Q ss_pred             CCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCc-cccccCCCCCEEeCCCCCCCCcccc
Q 022897          199 LTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNINGSLES  262 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~i~~  262 (290)
                      ++.|+.|+++.|.+. .|..+..+.++..|+..+|.+... ..+-........++.++.+.+.-+.
T Consensus        99 m~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen   99 MPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             hHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcc
Confidence            999999999999998 777777899999999999998872 2233333334445667777655444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.03  E-value=1.4e-05  Score=61.89  Aligned_cols=108  Identities=31%  Similarity=0.301  Sum_probs=65.3

Q ss_pred             CCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCcc
Q 022897          124 KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK  203 (290)
Q Consensus       124 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~  203 (290)
                      .....+||++|.+..  ...|..++.|..|.+.+|.++...+ ..-..+++|..|.+.+|++...+.+.  .+..++.|+
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKLE  116 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcc--hhccCCccc
Confidence            455667777776642  2345566777777777777765333 23334566777777777765555554  356666777


Q ss_pred             EEEcCCCCCCC-----CcCCCCCCCCcEEEccCCCCCC
Q 022897          204 ELDLRGCGITT-----SQGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       204 ~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~  236 (290)
                      +|.+-+|.++.     ...+..+++|+.||.++-...+
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E  154 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE  154 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence            77777776651     2334566667776666554444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.81  E-value=1.3e-05  Score=64.54  Aligned_cols=108  Identities=26%  Similarity=0.236  Sum_probs=55.3

Q ss_pred             CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCC--cCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897           95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN--FFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL  172 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  172 (290)
                      +..|+.|++.+..++...      .|..+++|+.|.++.|  ++.+.++...-.+|+|++++++.|++.....-..+..+
T Consensus        42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence            344555555555444321      4556666777777766  44444444444557777777777766532222234455


Q ss_pred             CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcC
Q 022897          173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR  208 (290)
Q Consensus       173 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~  208 (290)
                      .+|..|++..|.-......-...+.-+++|++|+-.
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            566666666665321111111234445556655543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.70  E-value=2e-05  Score=63.49  Aligned_cols=68  Identities=38%  Similarity=0.476  Sum_probs=32.4

Q ss_pred             hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCC---cCCCCCCCCcEEEccCCCCCC
Q 022897          168 GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       168 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~  236 (290)
                      .+..+++|++|.++.|.+...+.+.. ....+++|++|++++|++.++   ..+..+.+|..|++.+|..+.
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            34455555555555553222333333 333445566666666655522   223344455555555554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.65  E-value=0.00051  Score=59.98  Aligned_cols=138  Identities=14%  Similarity=0.137  Sum_probs=88.5

Q ss_pred             hcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897          119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN  198 (290)
Q Consensus       119 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  198 (290)
                      .+..+.++++|++++|.+. .+|. +  .++|++|.+++|.-....+ ..+  ..+|+.|++.+|..  ...+|.     
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~--L~sLP~-----  112 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPE--ISGLPE-----  112 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccc--cccccc-----
Confidence            4556789999999999776 3452 1  3469999999875433333 233  25899999998853  334443     


Q ss_pred             CCCccEEEcCCCCCCCCcCCCCC-CCCcEEEccCCCCCCcccc--ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEe
Q 022897          199 LTNLKELDLRGCGITTSQGLADL-PNLKTLDLRDCGITTIQGL--AKLKNLEALDLSWNNINGSLESQGLADLPNLKILD  275 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~~l--~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~  275 (290)
                        .|+.|++..+...   .+..+ ++|+.|.+.++.......+  .-.++|++|++++|... .+|.. +.  .+|+.|.
T Consensus       113 --sLe~L~L~~n~~~---~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~  183 (426)
T PRK15386        113 --SVRSLEIKGSATD---SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSIT  183 (426)
T ss_pred             --ccceEEeCCCCCc---ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccc-cc--ccCcEEE
Confidence              5788888766543   12233 3688888865432111111  12268999999999876 44543 22  5788888


Q ss_pred             cCCC
Q 022897          276 LRDC  279 (290)
Q Consensus       276 L~~n  279 (290)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            8776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=3.8e-06  Score=68.23  Aligned_cols=99  Identities=28%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC---ccccccCCCCCE
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT---IQGLAKLKNLEA  248 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~  248 (290)
                      +.+.+.|++-++.+.+   |.  ....++.|+.|.|+-|+++....+..|++|++|.|..|.|.+   ...+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~D---Is--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD---IS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccH---HH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            3455555665555422   22  345566666666666666655556667777777777777766   344566777777


Q ss_pred             EeCCCCCCCCccccc----ccCCCCCCCEEe
Q 022897          249 LDLSWNNINGSLESQ----GLADLPNLKILD  275 (290)
Q Consensus       249 L~l~~n~l~~~i~~~----~l~~l~~L~~L~  275 (290)
                      |.|..|.-.|.-+..    .+.-+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            777777666544432    234456666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.42  E-value=6e-05  Score=68.21  Aligned_cols=115  Identities=24%  Similarity=0.160  Sum_probs=51.3

Q ss_pred             CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCC-cCCCCc----hhhccCCCCCCEEEccCCC-CCCCcchhh
Q 022897           95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN-FFNDSI----LPYLNTLTSLTTLILYSNS-IEGSGTMQG  168 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-~~~~~~~~~  168 (290)
                      ++.|+.+.+.++.--..  .........++.|+.|+++++ ......    ......+.+|+.|+++++. +++......
T Consensus       187 ~~~L~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITD--DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCCh--hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            45666666555422111  011113445566666666542 111111    1122234566666666665 444333322


Q ss_pred             cccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCC
Q 022897          169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI  212 (290)
Q Consensus       169 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  212 (290)
                      ...+++|+.|.+..+...+...+.. ....++.|++|++++|..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCcc
Confidence            2335566666655554211112222 344455566666665543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.42  E-value=1.6e-06  Score=77.60  Aligned_cols=186  Identities=31%  Similarity=0.326  Sum_probs=126.2

Q ss_pred             CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh----ccCC-CCCCEEEccCCCCCCCcch---hhc
Q 022897           98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY----LNTL-TSLTTLILYSNSIEGSGTM---QGL  169 (290)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~---~~~  169 (290)
                      +..|.+.+|.+.......+...+.....|+.|++++|.+.+.....    +... +.|++|++..|.++.....   ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            7778888888887777777777888888999999988887533322    2232 5677788888887754332   234


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccch-hhhc----cCCCccEEEcCCCCCC------CCcCCCCCCC-CcEEEccCCCCCC-
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTR-LGLA----NLTNLKELDLRGCGIT------TSQGLADLPN-LKTLDLRDCGITT-  236 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~-~~~~----~~~~L~~L~l~~n~l~------~~~~~~~l~~-L~~L~l~~n~l~~-  236 (290)
                      .....++.+++..|.+...+.... ..+.    ...++++|++++|.++      ....+...++ +.+|++..|.+.+ 
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            456788888888888754443221 1233    4667888999988877      2234445555 6778888888876 


Q ss_pred             -----ccccccC-CCCCEEeCCCCCCCCcccc---cccCCCCCCCEEecCCCCCcc
Q 022897          237 -----IQGLAKL-KNLEALDLSWNNINGSLES---QGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       237 -----~~~l~~~-~~L~~L~l~~n~l~~~i~~---~~l~~l~~L~~L~L~~n~l~~  283 (290)
                           .+.+..+ ..+++++++.|.+++.-..   ..+..++.++.+.+++|++..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                 2345555 6778899999988753322   125556788888888888764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.15  E-value=0.002  Score=47.13  Aligned_cols=119  Identities=17%  Similarity=0.279  Sum_probs=46.9

Q ss_pred             hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCC
Q 022897          143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADL  221 (290)
Q Consensus       143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l  221 (290)
                      .|.++.+|+.+.+.. .+. .+....+..+++|+.+.+..+    ...+....+..+++|+.+.+..+... ....+..+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~   80 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc----ccccceeeeeccccccccccccccccccccccccc
Confidence            345566677666653 222 223345666666777766553    22344445566656666666542222 33344556


Q ss_pred             CCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCC
Q 022897          222 PNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL  271 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L  271 (290)
                      ++|+.+.+..+ +..  ...+... .|+.+.+.. .+. .++...|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            66666666554 333  3344444 666666554 233 3444445555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.99  E-value=0.0022  Score=46.90  Aligned_cols=61  Identities=18%  Similarity=0.245  Sum_probs=23.0

Q ss_pred             CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEcc
Q 022897           90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY  156 (290)
Q Consensus        90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  156 (290)
                      ..|..+.+|+.+.+.. .+......    .|..++.|+.+.+..+ +.......|..+++|+.+.+.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeeccccccccccc
Confidence            3445555566655543 23333222    4555555555555443 332222334444455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=4.1e-05  Score=62.36  Aligned_cols=89  Identities=29%  Similarity=0.383  Sum_probs=75.1

Q ss_pred             CCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCC
Q 022897          199 LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD  278 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~  278 (290)
                      +.+.+.|+.-+|.+.......+++.|+.|.|+-|.|+....+..++.|++|+|..|.|...-.-..+.++|+|+.|-|..
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            45678899999999866667889999999999999999999999999999999999987422223478999999999999


Q ss_pred             CCCcccccc
Q 022897          279 CGMTTIQGK  287 (290)
Q Consensus       279 n~l~~~~~~  287 (290)
                      |+-.|.-+.
T Consensus        98 NPCc~~ag~  106 (388)
T KOG2123|consen   98 NPCCGEAGQ  106 (388)
T ss_pred             CCcccccch
Confidence            988776553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.58  E-value=0.00035  Score=63.19  Aligned_cols=62  Identities=31%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             CCCCcEEECCCCc-CCCCchhhccC-CCCCCEEEccCCC-CCCCcchhhcccCCCCCeeeCCCCC
Q 022897          123 LKQLKILDLGCNF-FNDSILPYLNT-LTSLTTLILYSNS-IEGSGTMQGLANLRYLQVLDLSWNE  184 (290)
Q Consensus       123 l~~L~~L~l~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~  184 (290)
                      +++|+.|+++.+. ++......+.. +++|++|.+..|. +++.........++.|++|+++++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3444444444443 33322222222 4444444444444 3333333333344444444444444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.57  E-value=3.2e-05  Score=69.39  Aligned_cols=168  Identities=27%  Similarity=0.233  Sum_probs=116.8

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCC-CCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCCCCc-
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSL-KQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGSG-  164 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-  164 (290)
                      .+...+.|+.|++++|.+.......+.+.+... ..+++|++..|.++..    +...+.....++.++++.|.+.... 
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence            456678899999999999865444444555554 6788888888887654    3455666888999999999874211 


Q ss_pred             --chhhcc----cCCCCCeeeCCCCCCCCCCcc-chhhhccCCC-ccEEEcCCCCCC------CCcCCCCC-CCCcEEEc
Q 022897          165 --TMQGLA----NLRYLQVLDLSWNENITSGSL-TRLGLANLTN-LKELDLRGCGIT------TSQGLADL-PNLKTLDL  229 (290)
Q Consensus       165 --~~~~~~----~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~-L~~L~l~~n~l~------~~~~~~~l-~~L~~L~l  229 (290)
                        .+..+.    ...++++|.+.+|.+...... ....+...+. ++.|++..|.+.      ..+.+..+ ..++.+++
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l  269 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL  269 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence              112233    467899999999886322211 1124555555 677899998876      23445555 68899999


Q ss_pred             cCCCCCC------ccccccCCCCCEEeCCCCCCCC
Q 022897          230 RDCGITT------IQGLAKLKNLEALDLSWNNING  258 (290)
Q Consensus       230 ~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~  258 (290)
                      +.|.|++      ...+...+.++.+.+++|.+..
T Consensus       270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            9999987      3446667789999999998874

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.11  E-value=0.0045  Score=31.39  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=14.6

Q ss_pred             CCCCEEecCCCCCcccccccC
Q 022897          269 PNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       269 ~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++|++|+|++|+|+.+++++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777777776666

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.11  E-value=0.0045  Score=31.39  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=14.6

Q ss_pred             CCCCEEecCCCCCcccccccC
Q 022897          269 PNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       269 ~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++|++|+|++|+|+.+++++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456777777777777776666

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.03  E-value=0.0026  Score=30.90  Aligned_cols=15  Identities=40%  Similarity=0.585  Sum_probs=8.4

Q ss_pred             CCEEecCCCCCcccc
Q 022897          271 LKILDLRDCGMTTIQ  285 (290)
Q Consensus       271 L~~L~L~~n~l~~~~  285 (290)
                      |++|+|++|+|+.++
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            556666666666333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.96  E-value=0.0044  Score=53.55  Aligned_cols=132  Identities=27%  Similarity=0.291  Sum_probs=60.6

Q ss_pred             CCCCCcEEECCCCcC-CCCchhhcc-CCCCCCEEEccCCC-CCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897          122 SLKQLKILDLGCNFF-NDSILPYLN-TLTSLTTLILYSNS-IEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN  198 (290)
Q Consensus       122 ~l~~L~~L~l~~n~l-~~~~~~~l~-~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  198 (290)
                      .+..|++|+.+++.. +......++ ++.+|++|.++.|+ |+.......-.+.+.|+.+++..+.....+++.. .-.+
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls~~  370 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-LSRN  370 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-hccC
Confidence            345555555554432 222222222 35566666666654 2221111122344556666666555433333332 3344


Q ss_pred             CCCccEEEcCCCCCCCCc-------CCCCCCCCcEEEccCCCCCC---ccccccCCCCCEEeCCCC
Q 022897          199 LTNLKELDLRGCGITTSQ-------GLADLPNLKTLDLRDCGITT---IQGLAKLKNLEALDLSWN  254 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n  254 (290)
                      ++.|+.|.++.|.....+       .-..+..|+.+.++++..+.   ...+..+++|+.+++..+
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            555666666655443211       11233455555555555444   334445555555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.0046  Score=30.02  Aligned_cols=21  Identities=52%  Similarity=0.686  Sum_probs=15.9

Q ss_pred             CCCEEeCCCCCCCCcccccccCC
Q 022897          245 NLEALDLSWNNINGSLESQGLAD  267 (290)
Q Consensus       245 ~L~~L~l~~n~l~~~i~~~~l~~  267 (290)
                      +|++||+++|.++ .+|.. |++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTT-TTT
T ss_pred             CccEEECCCCcCE-eCChh-hcC
Confidence            4788888888888 78876 554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.24  E-value=0.0096  Score=51.55  Aligned_cols=82  Identities=28%  Similarity=0.438  Sum_probs=45.0

Q ss_pred             CCCccEEEcCCCCCC----CCcCCCCCCCCcEEEccCCCCCCc---cc----cccCCCCCEEeCCCCCCCCcccccccCC
Q 022897          199 LTNLKELDLRGCGIT----TSQGLADLPNLKTLDLRDCGITTI---QG----LAKLKNLEALDLSWNNINGSLESQGLAD  267 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l~~~---~~----l~~~~~L~~L~l~~n~l~~~i~~~~l~~  267 (290)
                      .+.|+.+++..+...    +...-.+++.|+.|.++.|....-   ..    -..+..|+.+.|+++..+.+.....+..
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            344555555555433    112223556677777776643331   11    2235567777777776654333333667


Q ss_pred             CCCCCEEecCCCC
Q 022897          268 LPNLKILDLRDCG  280 (290)
Q Consensus       268 l~~L~~L~L~~n~  280 (290)
                      +++|+.+++-+++
T Consensus       425 c~~Leri~l~~~q  437 (483)
T KOG4341|consen  425 CRNLERIELIDCQ  437 (483)
T ss_pred             Ccccceeeeechh
Confidence            7788888777764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.18  E-value=0.013  Score=26.37  Aligned_cols=14  Identities=43%  Similarity=0.681  Sum_probs=5.4

Q ss_pred             CCCEEecCCCCCcc
Q 022897          270 NLKILDLRDCGMTT  283 (290)
Q Consensus       270 ~L~~L~L~~n~l~~  283 (290)
                      +|+.|+|++|+|+.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34555555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.91  E-value=0.057  Score=27.20  Aligned_cols=23  Identities=43%  Similarity=0.559  Sum_probs=17.1

Q ss_pred             CCCCCEEeCCCCCCCCcccccccC
Q 022897          243 LKNLEALDLSWNNINGSLESQGLA  266 (290)
Q Consensus       243 ~~~L~~L~l~~n~l~~~i~~~~l~  266 (290)
                      +++|+.|+|++|.+. .+|...|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            357888888888888 67776443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.91  E-value=0.057  Score=27.20  Aligned_cols=23  Identities=43%  Similarity=0.559  Sum_probs=17.1

Q ss_pred             CCCCCEEeCCCCCCCCcccccccC
Q 022897          243 LKNLEALDLSWNNINGSLESQGLA  266 (290)
Q Consensus       243 ~~~L~~L~l~~n~l~~~i~~~~l~  266 (290)
                      +++|+.|+|++|.+. .+|...|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            357888888888888 67776443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.85  E-value=0.002  Score=51.45  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=41.8

Q ss_pred             hccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCE
Q 022897          196 LANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI  273 (290)
Q Consensus       196 ~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~  273 (290)
                      +..+...+.|+++.|++. .-..++.+..+..|+++.|++.- |..++....++.+++.+|..+ ..|.+ ++..+.+++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s-~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKS-QKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcc-ccccCCcch
Confidence            333444445555555443 33334444455555555555544 444555555555555555554 45554 555555555


Q ss_pred             EecCCCCC
Q 022897          274 LDLRDCGM  281 (290)
Q Consensus       274 L~L~~n~l  281 (290)
                      +++.+|.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            55555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=0.026  Score=44.23  Aligned_cols=80  Identities=25%  Similarity=0.199  Sum_probs=42.3

Q ss_pred             CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCC-CchhhccC-CCCCCEEEccCCC-CCCCcchhhcccCCC
Q 022897           98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND-SILPYLNT-LTSLTTLILYSNS-IEGSGTMQGLANLRY  174 (290)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~-l~~L~~L~l~~n~-~~~~~~~~~~~~l~~  174 (290)
                      ++.++-++..|....-.    .+..++.++.|.+.++.-.+ .-.+.+++ .++|+.|++++|. ++..... .+..+++
T Consensus       103 IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn  177 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN  177 (221)
T ss_pred             EEEEecCCchHHHHHHH----HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhh
Confidence            55666666665544333    55666666666666554321 22222322 3566666666653 4443332 4555666


Q ss_pred             CCeeeCCC
Q 022897          175 LQVLDLSW  182 (290)
Q Consensus       175 L~~L~l~~  182 (290)
                      |+.|.+.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            66666544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.98  E-value=0.032  Score=43.70  Aligned_cols=84  Identities=29%  Similarity=0.246  Sum_probs=54.3

Q ss_pred             CCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc-cCCCCCeeeCCCCCCCCCCccchhhhccCCCc
Q 022897          124 KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA-NLRYLQVLDLSWNENITSGSLTRLGLANLTNL  202 (290)
Q Consensus       124 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  202 (290)
                      ..++.+|-++..+.....+.+..++.++.|.+.+|.--+...-+-+. -.++|+.|++++|..++.+.+.  .+..+++|
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--~L~~lknL  178 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--CLLKLKNL  178 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--HHHHhhhh
Confidence            34677777777777666777777888888888877644322212222 3467888888888765544443  56677777


Q ss_pred             cEEEcCC
Q 022897          203 KELDLRG  209 (290)
Q Consensus       203 ~~L~l~~  209 (290)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            7776654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.54  E-value=0.061  Score=26.51  Aligned_cols=16  Identities=44%  Similarity=0.630  Sum_probs=7.5

Q ss_pred             CCCCEEecCCCCCccc
Q 022897          269 PNLKILDLRDCGMTTI  284 (290)
Q Consensus       269 ~~L~~L~L~~n~l~~~  284 (290)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4555555555555443

...

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=85.89  E-value=0.38  Score=43.51  Aligned_cols=64  Identities=27%  Similarity=0.208  Sum_probs=35.4

Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCC--CCCCCcCCCCC--CCCcEEEccCCCCCC
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC--GITTSQGLADL--PNLKTLDLRDCGITT  236 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~l--~~L~~L~l~~n~l~~  236 (290)
                      .+.+..+++++|.+.....+.. .....|+|..|+|++|  .+.....+.+.  ..|++|-+.+|.+..
T Consensus       217 ~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  217 FPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             CcceeeeecccchhhchhhhhH-HHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence            3456666666666655444443 4455566777777776  33322223322  346666677776655

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.75  E-value=0.89  Score=22.92  Aligned_cols=16  Identities=25%  Similarity=0.459  Sum_probs=9.9

Q ss_pred             CCCEEecCCCCCcccc
Q 022897          270 NLKILDLRDCGMTTIQ  285 (290)
Q Consensus       270 ~L~~L~L~~n~l~~~~  285 (290)
                      +|+.|++++|+++..|
T Consensus         3 ~L~~L~vs~N~Lt~LP   18 (26)
T smart00364        3 SLKELNVSNNQLTSLP   18 (26)
T ss_pred             ccceeecCCCccccCc
Confidence            4666666666666554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.50  E-value=1.5  Score=22.16  Aligned_cols=14  Identities=36%  Similarity=0.465  Sum_probs=7.3

Q ss_pred             CCCCEEecCCCCCc
Q 022897          269 PNLKILDLRDCGMT  282 (290)
Q Consensus       269 ~~L~~L~L~~n~l~  282 (290)
                      .+|+.|+++.|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34555555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		2e-05
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		4e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-04

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLAD 220
           G  T++G+  L  L  L+L  N+      +T L  L NLT + EL+L G  +     +A 
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQ------ITDLAPLKNLTKITELELSGNPLKNVSAIAG 105
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI 273
           L ++KTLDL    IT +  LA L NL+ L L  N I       GL +L  L I
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCGITTSQGLAD 220
           G  T++G+  L  L  L+L  N+      +T L  L NLT + EL+L G  +     +A 
Sbjct: 58  GVTTIEGIQYLNNLIGLELKDNQ------ITDLTPLKNLTKITELELSGNPLKNVSAIAG 111
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI 273
           L ++KTLDL    IT +  LA L NL+ L L  N I       GL +L  L I
Sbjct: 112 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 164

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 102/264 (38%), Gaps = 57/264 (21%)
Query: 41  EDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQS 100
           +D+ +PS   + + G+     + + + LS T+T      + T  SL +  L        +
Sbjct: 337 DDNNIPSTKSNTFTGL----VSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL-------T 385
Query: 101 LNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXX 160
           LNL+ N         A  +F  L QL+ILDLG N     +                    
Sbjct: 386 LNLTKNHISKI----ANGTFSWLGQLRILDLGLNEIEQKL-------------------- 421
Query: 161 EGSGTMQGLAN-----LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS 215
                 +GL N     L Y + L LS +      SL RL       L+ + L+   I+ S
Sbjct: 422 -SGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLM------LRRVALKNVDISPS 474
Query: 216 QGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNI-------NGSLESQGLA 266
                L NL  LDL +  I  I    L  L+NLE LD   NN+       N       L 
Sbjct: 475 -PFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLK 533
Query: 267 DLPNLKILDLRDCGMTTIQGKIFK 290
            L +L IL+L   G+  I   +FK
Sbjct: 534 GLSHLHILNLESNGLDEIPVGVFK 557

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-30
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-28
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-30
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-28
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-26
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-26
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-20
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-20
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-13
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	9e-08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  159 bits (404), Expect = 2e-44
 Identities = 68/278 (24%), Positives = 117/278 (42%), Gaps = 32/278 (11%)

Query: 6   GCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRV 65
             L  E   L+  K           D  +LP W         + C  ++GV C     +V
Sbjct: 8   QSLYREIHQLISFKDVLP-------DKNLLPDWSSN-----KNPCT-FDGVTCR--DDKV 52

Query: 66  MQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQ 125
             + L+       +   S+SLL+++       L+SL LS++   G     +   F     
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLT------GLESLFLSNSHING-----SVSGFKCSAS 101

Query: 126 LKILDLGCNFFNDSILPY--LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN 183
           L  LDL  N  +  +     L + + L  L + SN+++  G + G   L  L+VLDLS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

Query: 184 ENITSGSLTRLGLA-NLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGIT-TIQGLA 241
            +I+  ++    L+     LK L + G  I+    ++   NL+ LD+     +  I  L 
Sbjct: 162 -SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLG 220

Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279
               L+ LD+S N ++G   S+ ++    LK+L++   
Sbjct: 221 DCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (259), Expect = 5e-25
 Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 15/190 (7%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L+ L++S N F            G    L+ LD+  N  +      ++T T L  L + S
Sbjct: 202 LEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS-- 215
           N   G         L+ LQ L L+ N   T G +          L  LDL G     +  
Sbjct: 257 NQFVGP---IPPLPLKSLQYLSLAEN-KFT-GEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 216 QGLADLPNLKTLDLRDCGIT---TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLK 272
                   L++L L     +    +  L K++ L+ LDLS+N  +G L         +L 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 273 ILDLRDCGMT 282
            LDL     +
Sbjct: 372 TLDLSSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 1e-24
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           LQ L+L++N F G   +      G+   L  LDL  N F  ++ P+  + + L +L L S
Sbjct: 271 LQYLSLAENKFTGEIPD---FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT-NLKELDLRGCGIT--- 213
           N+  G   M  L  +R L+VLDLS+N    SG L    L NL+ +L  LDL     +   
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFN-EF-SGELPE-SLTNLSASLLTLDLSSNNFSGPI 384

Query: 214 -TSQGLADLPNLKTLDLRDCGIT-TI-QGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
             +        L+ L L++ G T  I   L+    L +L LS+N ++G++    L  L  
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSK 443

Query: 271 LKILDLRD 278
           L+ L L  
Sbjct: 444 LRDLKLWL 451

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.3 bits (243), Expect = 7e-23
 Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 18/189 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLK-QLKILDLGCNFFNDSILPYL--NTLTSLTTLI 154
           L+ L+LS N F G    +  +S  +L   L  LDL  N F+  ILP L  N   +L  L 
Sbjct: 345 LKVLDLSFNEFSG----ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 155 LYSNSIEGSGTM-QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213
           L +N    +G +   L+N   L  L LS+N  + SG++    L +L+ L++L L    + 
Sbjct: 401 LQNNGF--TGKIPPTLSNCSELVSLHLSFN-YL-SGTIPS-SLGSLSKLRDLKLWLNMLE 455

Query: 214 TS--QGLADLPNLKTLDLRDCGIT-TI-QGLAKLKNLEALDLSWNNINGSLESQGLADLP 269
               Q L  +  L+TL L    +T  I  GL+   NL  + LS N + G +  + +  L 
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLE 514

Query: 270 NLKILDLRD 278
           NL IL L +
Sbjct: 515 NLAILKLSN 523

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 58/195 (29%), Positives = 76/195 (38%), Gaps = 13/195 (6%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-YLNTLT 148
            L    + L  L+LS N F G         FGS   L+ L L  N F+  +    L  + 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPP----FFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 149 SLTTLILYSNSIEGSGTMQGLANLRY-LQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
            L  L L  N   G      L NL   L  LDLS N N +   L  L       L+EL L
Sbjct: 344 GLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYL 401

Query: 208 RGCGITTS--QGLADLPNLKTLDLRDCGIT-TI-QGLAKLKNLEALDLSWNNINGSLESQ 263
           +  G T      L++   L +L L    ++ TI   L  L  L  L L  N + G +  Q
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQ 460

Query: 264 GLADLPNLKILDLRD 278
            L  +  L+ L L  
Sbjct: 461 ELMYVKTLETLILDF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.7 bits (226), Expect = 1e-20
 Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTS 149
           SL +    L +L+LS N F G               L+ L L  N F   I P L+  + 
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPN--LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
           L +L L  N + G+     L +L  L+ L L  N  +  G + +  L  +  L+ L L  
Sbjct: 420 LVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLN-ML-EGEIPQ-ELMYVKTLETLILDF 475

Query: 210 CGITTS--QGLADLPNLKTLDLRDCGIT-TI-QGLAKLKNLEALDLSWNNINGSLESQGL 265
             +T     GL++  NL  + L +  +T  I + + +L+NL  L LS N+ +G++    L
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-PAEL 534

Query: 266 ADLPNLKILDLRD 278
            D  +L  LDL  
Sbjct: 535 GDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.3 bits (199), Expect = 4e-17
 Identities = 42/204 (20%), Positives = 72/204 (35%), Gaps = 31/204 (15%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY 156
            L++L L  N   G    +      +   L  + L  N     I  ++  L +L  L L 
Sbjct: 467 TLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 157 SNSIEGSGTMQGLANLRYLQVLDLSWN------------------ENITSGSLTRLGLAN 198
           +NS  G+   + L + R L  LDL+ N                   N  +G      + N
Sbjct: 523 NNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV-YIKN 580

Query: 199 LTNLKELDLRGCGITTS----QGLADLPNLKTLDLRDCGIT--TIQGLAKLKNLEALDLS 252
               KE    G  +       + L  L      ++        T        ++  LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 253 WNNINGSLESQGLADLPNLKILDL 276
           +N ++G +  + +  +P L IL+L
Sbjct: 641 YNMLSGYI-PKEIGSMPYLFILNL 663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 34/178 (19%)

Query: 83  SASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP 142
             +L N S      EL SL+LS N+  G        S GSL +L+ L L  N     I  
Sbjct: 411 PPTLSNCS------ELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
            L  + +L TLIL  N + G     GL+N   L  + LS N  + +G + +  +  L NL
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNN-RL-TGEIPK-WIGRLENL 516

Query: 203 KELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSL 260
             L L     + +     +P                 L   ++L  LDL+ N  NG++
Sbjct: 517 AILKLSNNSFSGN-----IPA---------------ELGDCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 33/205 (16%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFN------------------- 137
            L  L LS+N F G          G  + L  LDL  N FN                   
Sbjct: 515 NLAILKLSNNSFSG----NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570

Query: 138 -DSILPYLNTLTSLTTLILYSNSIEGSGT-MQGLANLRYLQVLDLSWNENITSGSLTRLG 195
                 Y+             N +E  G   + L  L      +++    +  G  +   
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT--SRVYGGHTSPT- 627

Query: 196 LANLTNLKELDLRGCGITTS--QGLADLPNLKTLDLRDCGIT-TI-QGLAKLKNLEALDL 251
             N  ++  LD+    ++    + +  +P L  L+L    I+ +I   +  L+ L  LDL
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687

Query: 252 SWNNINGSLESQGLADLPNLKILDL 276
           S N ++G +    ++ L  L  +DL
Sbjct: 688 SSNKLDGRIPQA-MSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS-QGLADLPNLKTLDL 229
               +  +DLS        S     L +LT L+ L L    I  S  G     +L +LDL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 230 RDCG----ITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT 282
                   +TT+  L     L+ L++S N ++   +  G   L +L++LDL    ++
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 30/190 (15%)

Query: 95  FEELQSLNLSDNWFRG----------------FYENKAYDSFGSLKQLKILDLGCNF--F 136
              L  L+L+ N F G                F   K Y    +    K      N   F
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 137 NDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGL 196
                  LN L++     + S    G  T     N   +  LD+S+N  + SG + +  +
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGH-TSPTFDNNGSMMFLDMSYN-ML-SGYIPK-EI 652

Query: 197 ANLTNLKELDLRGCGITTS--QGLADLPNLKTLDL---RDCGITTI-QGLAKLKNLEALD 250
            ++  L  L+L    I+ S    + DL  L  LDL   +  G   I Q ++ L  L  +D
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG--RIPQAMSALTMLTEID 710

Query: 251 LSWNNINGSL 260
           LS NN++G +
Sbjct: 711 LSNNNLSGPI 720

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (296), Expect = 4e-31
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 18/189 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L+ LNL+ N               +L +L  L +G N    + +  L  LT+L  L L  
Sbjct: 68  LEYLNLNGNQITDI------SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           ++I     +  LANL  +  L+L  N N++  S     L+N+T L  L +    +     
Sbjct: 120 DNISD---ISPLANLTKMYSLNLGANHNLSDLS----PLSNMTGLNYLTVTESKVKDVTP 172

Query: 218 LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277
           +A+L +L +L L    I  I  LA L +L       N I        +A++  L  L + 
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD---ITPVANMTRLNSLKIG 229

Query: 278 DCGMTTIQG 286
           +  +T +  
Sbjct: 230 NNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (289), Expect = 4e-30
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L  L ++++  +            +L  L  L L  N   D  +  L +LTSL     Y 
Sbjct: 157 LNYLTVTESKVKDV------TPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYV 208

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N I     +  +AN+  L  L +  N  IT  S     LANL+ L  L++    I+    
Sbjct: 209 NQITD---ITPVANMTRLNSLKIGNN-KITDLS----PLANLSQLTWLEIGTNQISDINA 260

Query: 218 LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277
           + DL  LK L++    I+ I  L  L  L +L L+ N +  + + + +  L NL  L L 
Sbjct: 261 VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLFLS 319

Query: 278 DCGMTTIQG 286
              +T I+ 
Sbjct: 320 QNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (284), Expect = 2e-29
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 18/193 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           + SLNL  N               ++  L  L +  +   D  +  +  LT L +L L  
Sbjct: 134 MYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNY 186

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N IE    +  LA+L  L       N  IT  +     +AN+T L  L +    IT    
Sbjct: 187 NQIED---ISPLASLTSLHYFTAYVN-QITDIT----PVANMTRLNSLKIGNNKITDLSP 238

Query: 218 LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277
           LA+L  L  L++    I+ I  +  L  L+ L++  N I+   +   L +L  L  L L 
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLN 295

Query: 278 DCGMTTIQGKIFK 290
           +  +     ++  
Sbjct: 296 NNQLGNEDMEVIG 308

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 2e-28
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 18/189 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
             +L                     L +     L      D  +     L S+T L++  
Sbjct: 2   AATLATLPA------PINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
             +    ++QG+  L  L+ L+L+ N  IT  S     L+NL  L  L +    IT    
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGN-QITDIS----PLSNLVKLTNLYIGTNKITDISA 105

Query: 218 LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277
           L +L NL+ L L +  I+ I  LA L  + +L+L  N+    L    L+++  L  L + 
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVT 163

Query: 278 DCGMTTIQG 286
           +  +  +  
Sbjct: 164 ESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (269), Expect = 4e-27
 Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 21/183 (11%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L SL+L+ N               SL  L       N   D  +  +  +T L +L + +
Sbjct: 179 LYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGN 230

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N I     +  LANL  L  L++  N  I+  +     + +LT LK L++    I+    
Sbjct: 231 NKITD---LSPLANLSQLTWLEIGTN-QISDIN----AVKDLTKLKMLNVGSNQISDISV 282

Query: 218 LADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275
           L +L  L +L L +  +     + +  L NL  L LS N+I      + LA L  +   D
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSAD 339

Query: 276 LRD 278
             +
Sbjct: 340 FAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L SL + +N               +L QL  L++G N  +D  +  +  LT L  L + S
Sbjct: 223 LNSLKIGNNKITDL------SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N I     +  L NL  L  L L+ N  + +  +    +  LTNL  L L    IT  + 
Sbjct: 275 NQISD---ISVLNNLSQLNSLFLNNN-QLGNEDME--VIGGLTNLTTLFLSQNHITDIRP 328

Query: 218 LADLPNLKTLDLRDCGIT 235
           LA L  + + D  +  I 
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
           +++      +L+ LN+  N               +L QL  L L  N   +  +  +  L
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE 184
           T+LTTL L  N I     ++ LA+L  +   D +   
Sbjct: 311 TNLTTLFLSQNHITD---IRPLASLSKMDSADFANQV 344

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  119 bits (298), Expect = 2e-30
 Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 19/192 (9%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
           F E    NL               +   L  +  +    +      +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKK------SVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
           L  N +     ++ L NL+ L  L L  N  I   S     L +L  LK L L   GI+ 
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDEN-KIKDLS----SLKDLKKLKSLSLEHNGISD 123

Query: 215 SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKIL 274
             GL  LP L++L L +  IT I  L++L  L+ L L  N I+  +    LA L  L+ L
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIV--PLAGLTKLQNL 180

Query: 275 DLRDCGMTTIQG 286
            L    ++ ++ 
Sbjct: 181 YLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  112 bits (282), Expect = 3e-28
 Identities = 53/200 (26%), Positives = 73/200 (36%), Gaps = 18/200 (9%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
           ++        +  L L+ N      +        +LK L  L L  N   D  L  L  L
Sbjct: 57  SVQGIQYLPNVTKLFLNGN------KLTDIKPLTNLKNLGWLFLDENKIKD--LSSLKDL 108

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
             L +L L  N I     + GL +L  L+ L L  N  IT  +     L+ LT L  L L
Sbjct: 109 KKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNN-KITDIT----VLSRLTKLDTLSL 160

Query: 208 RGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI--NGSLESQGL 265
               I+    LA L  L+ L L    I+ ++ LA LKNL+ L+L               L
Sbjct: 161 EDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 266 ADLPNLKILDLRDCGMTTIQ 285
                +K  D        I 
Sbjct: 221 VVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  101 bits (253), Expect = 2e-24
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 11/143 (7%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
            +         L   S+           L  +  +  + + +I S      G+  L N+ 
Sbjct: 17  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS-DIKSVQ----GIQYLPNVT 68

Query: 204 ELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQ 263
           +L L G  +T  + L +L NL  L L +  I  +  L  LK L++L L  N I+   +  
Sbjct: 69  KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS---DIN 125

Query: 264 GLADLPNLKILDLRDCGMTTIQG 286
           GL  LP L+ L L +  +T I  
Sbjct: 126 GLVHLPQLESLYLGNNKITDITV 148

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.2 bits (205), Expect = 4e-18
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 195 GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWN 254
                    + +L+   +T +    +L ++  +   +  I ++QG+  L N+  L L+ N
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 75

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQG 286
            +    + + L +L NL  L L +  +  +  
Sbjct: 76  KLT---DIKPLTNLKNLGWLFLDENKIKDLSS 104

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 9e-12
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 202 LKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLE 261
           + E       I               +L+   +T      +L +++ +  + ++I  S++
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQ 59

Query: 262 SQGLADLPNLKILDLRDCGMTTIQG 286
             G+  LPN+  L L    +T I+ 
Sbjct: 60  --GIQYLPNVTKLFLNGNKLTDIKP 82

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
           +++      +L+SL L +N      +         L +L  L L  N  +D  +  L  L
Sbjct: 123 DINGLVHLPQLESLYLGNN------KITDITVLSRLTKLDTLSLEDNQISD--IVPLAGL 174

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
           T L  L L  N I     ++ LA L+ L VL+L   E +      +  L     +K  D 
Sbjct: 175 TKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 208 RGCGITTSQGLADLPNLKTL 227
                       D       
Sbjct: 232 SLVTPEIISDDGDYEKPNVK 251

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  113 bits (285), Expect = 5e-30
 Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 22/222 (9%)

Query: 69  SLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKI 128
           +   T + N   +   S+ +    +    +  +  +++  +             L  +  
Sbjct: 22  AFAETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDIKSV------QGIQYLPNVTK 72

Query: 129 LDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS 188
           L L  N   D  +  L  L +L  L L  N ++    +  L +L+ L+ L L  N  I+ 
Sbjct: 73  LFLNGNKLTD--IKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHN-GISD 126

Query: 189 GSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA 248
            +    GL +L  L+ L L    IT    L+ L  L TL L D  I+ I  LA L  L+ 
Sbjct: 127 IN----GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182

Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           L LS N+I+   + + LA L NL +L+L              
Sbjct: 183 LYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQS 221

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  104 bits (262), Expect = 1e-26
 Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 20/217 (9%)

Query: 69  SLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKI 128
            L   +++   +     + ++        +  L L+ N      +        +LK L  
Sbjct: 44  ELNSIDQIIANNS---DIKSVQGIQYLPNVTKLFLNGN------KLTDIKPLANLKNLGW 94

Query: 129 LDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS 188
           L L  N   D  L  L  L  L +L L  N I     + GL +L  L+ L L  N  IT 
Sbjct: 95  LFLDENKVKD--LSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNN-KITD 148

Query: 189 GSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA 248
            +     L+ LT L  L L    I+    LA L  L+ L L    I+ ++ LA LKNL+ 
Sbjct: 149 IT----VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 204

Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285
           L+L       +      ++L     +   D  + T +
Sbjct: 205 LELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTPE 240

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
            +         L   S+           L  +  +  + + +I S      G+  L N+ 
Sbjct: 20  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS-DIKSVQ----GIQYLPNVT 71

Query: 204 ELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQ 263
           +L L G  +T  + LA+L NL  L L +  +  +  L  LK L++L L  N I+   +  
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS---DIN 128

Query: 264 GLADLPNLKILDLRDCGMTTIQG 286
           GL  LP L+ L L +  +T I  
Sbjct: 129 GLVHLPQLESLYLGNNKITDITV 151

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 40/194 (20%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
           ++      + L  L L +N      + K   S   LK+LK L L  N  +D  +  L  L
Sbjct: 82  DIKPLANLKNLGWLFLDEN------KVKDLSSLKDLKKLKSLSLEHNGISD--INGLVHL 133

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
             L +L L +N I     +  L+ L  L  L L  N  I+        LA LT L+ L L
Sbjct: 134 PQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDN-QISDIV----PLAGLTKLQNLYL 185

Query: 208 RGCGITTSQGLADLPNLKTLDLRDCGIT------------------------TIQGLAKL 243
               I+  + LA L NL  L+L                              T + ++  
Sbjct: 186 SKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

Query: 244 KNLEALDLSWNNIN 257
            + E  ++ W+   
Sbjct: 246 GDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 195 GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWN 254
                    + +L+   +T +    +L ++  +   +  I ++QG+  L N+  L L+ N
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 78

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQG 286
            +    + + LA+L NL  L L +  +  +  
Sbjct: 79  KLT---DIKPLANLKNLGWLFLDENKVKDLSS 107

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGM 281
           P           I  I            +L   ++    ++    +L ++  +   +  +
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 58

Query: 282 TTIQG 286
            ++QG
Sbjct: 59  KSVQG 63

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  113 bits (284), Expect = 1e-29
 Identities = 59/203 (29%), Positives = 83/203 (40%), Gaps = 19/203 (9%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
            +        L  L L DN               +L ++  L+L  N   +  +  +  L
Sbjct: 55  TIEGVQYLNNLIGLELKDNQITDL------APLKNLTKITELELSGNPLKN--VSAIAGL 106

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
            S+ TL L S  I     +  LA L  LQVL L  N  IT+ S     LA LTNL+ L +
Sbjct: 107 QSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLN-QITNIS----PLAGLTNLQYLSI 158

Query: 208 RGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD 267
               ++    LA+L  L TL   D  I+ I  LA L NL  + L  N I+   +   LA+
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS---DVSPLAN 215

Query: 268 LPNLKILDLRDCGMTTIQGKIFK 290
             NL I+ L +  +T        
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNN 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  107 bits (268), Expect = 2e-27
 Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 13/165 (7%)

Query: 122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLS 181
           +L     +  G +   D        L  +TTL  +   +    T++G+  L  L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLA 241
            N  IT  +     L NLT + EL+L G  +     +A L ++KTLDL    IT +  LA
Sbjct: 72  DN-QITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286
            L NL+ L L  N I        LA L NL+ L + +  ++ +  
Sbjct: 127 GLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTP 168

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.8 bits (244), Expect = 5e-24
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
              L +   +    +++         A+L  +  L       +T+      G+  L NL 
Sbjct: 15  DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGT-GVTTIE----GVQYLNNLI 66

Query: 204 ELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQ 263
            L+L+   IT    L +L  +  L+L    +  +  +A L++++ LDL+   I    +  
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT---DVT 123

Query: 264 GLADLPNLKILDLRDCGMTTIQG 286
            LA L NL++L L    +T I  
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISP 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.2 bits (219), Expect = 2e-20
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 154 ILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213
           I    +I     +     L     +    + N+T         A+L  +  L   G G+T
Sbjct: 3   ITQPTAIN---VIFPDPALANAIKIAAGKS-NVTDTV----TQADLDGITTLSAFGTGVT 54

Query: 214 TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI 273
           T +G+  L NL  L+L+D  IT +  L  L  +  L+LS N +        +A L ++K 
Sbjct: 55  TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKT 111

Query: 274 LDLRDCGMTTIQG 286
           LDL    +T +  
Sbjct: 112 LDLTSTQITDVTP 124

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.4 bits (217), Expect = 3e-20
 Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 31/207 (14%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
           +++      ++  L LS N  +         +   L+ +K LDL      D  +  L  L
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITD--VTPLAGL 128

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS----GSLTRL--------- 194
           ++L  L L  N I     +  LA L  LQ L +     ++      +L++L         
Sbjct: 129 SNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK 184

Query: 195 -----GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEAL 249
                 LA+L NL E+ L+   I+    LA+  NL  + L +  IT         NL   
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF-YNNNLVVP 243

Query: 250 DLSWNNINGSLESQGLADLPNLKILDL 276
           ++        +    ++D       +L
Sbjct: 244 NVVKGPSGAPIAPATISDNGTYASPNL 270

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (291), Expect = 3e-29
 Identities = 52/208 (25%), Positives = 75/208 (36%), Gaps = 16/208 (7%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSL 150
                 L+ L LS N F    +     S  +   L  L +  N     +    L  L +L
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQI----SASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 151 TTLILYSNSIEGSGTMQG-LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
             L L  + IE S      L NL +LQ L+LS+N    S  L          L+ LDL  
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLS--LKTEAFKECPQLELLDLAF 409

Query: 210 CGITTSQG---LADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQ- 263
             +          +L  LK L+L    +          L  L+ L+L  N+       + 
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 264 -GLADLPNLKILDLRDCGMTTIQGKIFK 290
             L  L  L+IL L  C +++I    F 
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFT 497

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (285), Expect = 1e-28
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 12/203 (5%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           ++ + FH F  LQ L+L+                  L  LK L L  N F +      + 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELP-----SGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
             SLT L +  N+         L NL  L+ LDLS + +I +     L L NL++L+ L+
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLN 382

Query: 207 LRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG---LAKLKNLEALDLSWNNINGSLE 261
           L      +  ++   + P L+ LDL    +           L  L+ L+LS + ++    
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISS 441

Query: 262 SQGLADLPNLKILDLRDCGMTTI 284
            Q    LP L+ L+L+       
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKG 464

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (282), Expect = 4e-28
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 14/199 (7%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           ++S+NL  ++F     N    +F     L+ LDL     +  +   L  L++L  L+L +
Sbjct: 256 VESINLQKHYFFNISSN----TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQ- 216
           N  E    +   +N   L  L +  N       L    L NL NL+ELDL    I TS  
Sbjct: 311 NKFENLCQIS-ASNFPSLTHLSIKGNTKRLE--LGTGCLENLENLRELDLSHDDIETSDC 367

Query: 217 ---GLADLPNLKTLDLRDCGITTIQ--GLAKLKNLEALDLSWNNINGSLESQGLADLPNL 271
               L +L +L++L+L      +++     +   LE LDL++  +          +L  L
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 272 KILDLRDCGMTTIQGKIFK 290
           K+L+L    +     ++F 
Sbjct: 428 KVLNLSHSLLDISSEQLFD 446

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (252), Expect = 4e-24
 Identities = 46/233 (19%), Positives = 82/233 (35%), Gaps = 40/233 (17%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKI--LDLGCNF------- 135
           S + +    P E+L+ L+  +N      +    +   SL+Q     L+L  N        
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSK----EDMSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 136 -FNDSILPYLN-----------------TLTSLTTLILYSNSIEG--SGTMQGLANLRYL 175
            F+ ++   LN                 T+ SL          E       +GL  +  +
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SV 256

Query: 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT-SQGLADLPNLKTLDLRDCGI 234
           + ++L  +    +  ++       + L+ELDL    ++    GL  L  LK L L     
Sbjct: 257 ESINLQKH-YFFN--ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF 313

Query: 235 TTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285
             +     +   +L  L +  N     L +  L +L NL+ LDL    + T  
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.7 bits (249), Expect = 9e-24
 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           +  + F     L  L+L+       +E    D+F S  +L  L L  N         L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
             +L  L      I        L N + L+ L L  N +I+  S+          LK LD
Sbjct: 104 PKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSN-HIS--SIKLPKGFPTEKLKVLD 159

Query: 207 LRGCGITT--SQGLADLPNLK--TLDLRDCGITTIQ-GLAKLKNLEALDLSWNNING-SL 260
            +   I     + ++ L      +L+L    I  I+ G       ++L+           
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 261 ESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +    + + +L +    D     I   +F+
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 22/204 (10%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSL 150
                 LQSLNLS N            +F    QL++LDL                L  L
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTE----AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 151 TTLILYSNSIEGS--GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
             L L  + ++ S      GL  L   Q L+L  N            L  L  L+ L L 
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPAL---QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 209 GCGIT--TSQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
            C ++         L  +  +DL    +T+     L+ LK +  L+L+ N+I+  +    
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHIS-IILPSL 542

Query: 265 LADLPNLKILDLR------DCGMT 282
           L  L   + ++LR       C   
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 95.9 bits (239), Expect = 2e-22
 Identities = 35/236 (14%), Positives = 61/236 (25%), Gaps = 37/236 (15%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
             +  +     + L+ L                    + K L+ L LG N  +   LP  
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 145 NTLTSLTTLILYSNSIEG--SGTMQGLANLR----------------------YLQVLDL 180
                L  L   +N+I       M  L                            Q L+ 
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 181 SWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLA----DLPNLKTLDLRDCGITT 236
                        L  + + +L                        ++++++L+      
Sbjct: 210 GGT-QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 237 IQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           I          L+ LDL+  +++  L S GL  L  LK L L       +      
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANKFENLCQISAS 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.1 bits (219), Expect = 8e-20
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
             S   L    N +         + L  L  LDL+    I    +      +   L  L 
Sbjct: 32  PNSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRC-QIY--WIHEDTFQSQHRLDTLV 87

Query: 207 LRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLES 262
           L    +       L+    LK L     GI++I    L   K LE+L L  N+I+ S++ 
Sbjct: 88  LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKL 146

Query: 263 QGLADLPNLKILDLRDCGMTTIQGKIF 289
                   LK+LD ++  +  +  +  
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDM 173

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 91  LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSL 150
            F    +L+ L+L+    +          F +L  LK+L+L  +  + S     + L +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 151 TTLILYSNSIEGSGTMQ--GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
             L L  N        +   L  L  L++L LS+  +++S  + +    +L  +  +DL 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSS--IDQHAFTSLKMMNHVDLS 508

Query: 209 GCGITTSQG--LADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
              +T+S    L+ L  +  L+L    I+ I    L  L     ++L  N ++ +  +  
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

Query: 265 LAD 267
             +
Sbjct: 568 FLE 570

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 11/119 (9%)

Query: 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCG 233
           +  +           L  +      + + L+     + T  +   + L NL  LDL  C 
Sbjct: 15  KTYNCENL------GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 234 ITTIQ--GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           I  I          L+ L L+ N +   +    L+    LK L     G+++I      
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           ++   F   + +  ++LS N           ++   LK +  L+L  N  +  +   L  
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSI----EALSHLKGI-YLNLASNHISIILPSLLPI 545

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL 194
           L+   T+ L  N ++ + +           +  L   E+    +   L
Sbjct: 546 LSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (286), Expect = 1e-28
 Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 20/212 (9%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
           F     L+ L+L  N             +  L+ +  + L  N +          + SL 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 152 TLILYSNSIEGSGTMQG-LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC 210
            L+L   +++   +       LR L +LDLS N NI +  +    L  L  L+ LDL+  
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIAN--INDDMLEGLEKLEILDLQHN 514

Query: 211 GITT----------SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNING 258
            +               L  L +L  L+L   G   I       L  L+ +DL  NN+N 
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 259 SLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
            L +    +  +LK L+L+   +T+++ K+F 
Sbjct: 575 -LPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (281), Expect = 6e-28
 Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 18/215 (8%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           S L+   F     L  L+L  N  +    N     F   K L  LDL  N  + + L   
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 145 NTLTSLTTLILYSNSIEG-SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
             L +L  L+L +N I+        +     L+ L+LS N  I     +      +  L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIK--EFSPGCFHAIGRLF 198

Query: 204 ELDLRGCGITTS-----QGLADLPNLKTLDLRDCGITTIQGLA----KLKNLEALDLSWN 254
            L L    +  S            +++ L L +  ++T         K  NL  LDLS+N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           N+N  + +   A LP L+   L    +  +     
Sbjct: 259 NLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (277), Expect = 2e-27
 Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 16/211 (7%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           L  + F  + +L SL++  N           +    L  LK+L+L  N  +         
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
            T+LT L L SNSI+           + L  LDLS N  ++  S        L NL+EL 
Sbjct: 96  CTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHN-GLS--STKLGTQVQLENLQELL 151

Query: 207 LRGCGITTSQ----GLADLPNLKTLDLRDCGITTIQ--GLAKLKNLEALDLSWNNINGSL 260
           L    I   +     +    +LK L+L    I          +  L  L L+   +  SL
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 261 ESQGLAD--LPNLKILDLRDCGMTTIQGKIF 289
             +   +    +++ L L +  ++T     F
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (276), Expect = 3e-27
 Identities = 58/217 (26%), Positives = 84/217 (38%), Gaps = 16/217 (7%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           +  ++F     L+ L+LS+++              +   L IL+L  N  +       + 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
           L  L  L L  N I    T Q    L  +  + LS+N       LTR   A + +L+ L 
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYL--QLTRNSFALVPSLQRLM 460

Query: 207 LRGCGITTSQG----LADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNI---- 256
           LR   +            L NL  LDL +  I  I    L  L+ LE LDL  NN+    
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 257 ---NGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
              N       L  L +L IL+L   G   I  ++FK
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (271), Expect = 1e-26
 Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 15/196 (7%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
              +  LNL+ N  R         +F    QL  LD+G N  +         L  L  L 
Sbjct: 24  PTNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
           L  N +      +  A    L  L L  N +I    +         NL  LDL   G+++
Sbjct: 80  LQHNELSQLSD-KTFAFCTNLTELHLMSN-SIQ--KIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 215 --SQGLADLPNLKTLDLRDCGITTIQ----GLAKLKNLEALDLSWNNINGSLESQGLADL 268
                   L NL+ L L +  I  ++     +    +L+ L+LS N I           +
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAI 194

Query: 269 PNLKILDLRDCGMTTI 284
             L  L L +  +   
Sbjct: 195 GRLFGLFLNNVQLGPS 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (271), Expect = 1e-26
 Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 23/208 (11%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L  L+LS N           DSF  L QL+   L  N         L+ L ++  L L  
Sbjct: 250 LTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 158 NSIEGSGTMQGL--------ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
           +  + S ++  L          L+ L+ L++  N +I    +       L NLK L L  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIP--GIKSNMFTGLINLKYLSLSN 362

Query: 210 CGIT----TSQGLADLPN--LKTLDLRDCGITTIQ--GLAKLKNLEALDLSWNNINGSLE 261
              +    T++    L +  L  L+L    I+ I+    + L +LE LDL  N I   L 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 262 SQGLADLPNLKILDLRDCGMTTIQGKIF 289
            Q    L N+  + L       +    F
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSF 450

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 3e-26
 Identities = 61/234 (26%), Positives = 88/234 (37%), Gaps = 18/234 (7%)

Query: 67  QLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQL 126
            L+L  +         S   ++   F   + L+ LN+ DN   G   N     F  L  L
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN----MFTGLINL 355

Query: 127 KILDLGCNFFNDSILPYLN----TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSW 182
           K L L  +F +   L          + L  L L  N I    +    + L +L+VLDL  
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGL 414

Query: 183 NENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG- 239
           NE      LT      L N+ E+ L             A +P+L+ L LR   +  +   
Sbjct: 415 NEI--GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 240 ---LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                 L+NL  LDLS NNI   +    L  L  L+ILDL+   +  +      
Sbjct: 473 PSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANP 525

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (264), Expect = 1e-25
 Identities = 50/203 (24%), Positives = 75/203 (36%), Gaps = 16/203 (7%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFN--DSILPYL 144
           L    +   E +  + LS N +     N    SF  +  L+ L L        DS     
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRN----SFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN-----ENITSGSLTRLGLANL 199
             L +LT L L +N+I        L  L  L++LDL  N         +       L  L
Sbjct: 477 QPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 200 TNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNN 255
           ++L  L+L   G      +   DL  LK +DL    + T+         +L++L+L  N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 256 INGSLESQGLADLPNLKILDLRD 278
           I    +        NL  LD+R 
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (264), Expect = 1e-25
 Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 19/214 (8%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKA-----YDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
            H    ++ LNL  ++ +      +       SF  LK L+ L++  N            
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 147 LTSLTTLILYSNSIEG----SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
           L +L  L L ++        + T   LA+   L +L+L+ N  I+   +     + L +L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKN-KIS--KIESDAFSWLGHL 407

Query: 203 KELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNIN 257
           + LDL    I    T Q    L N+  + L       +     A + +L+ L L    + 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 258 GSLESQG-LADLPNLKILDLRDCGMTTIQGKIFK 290
               S      L NL ILDL +  +  I   + +
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 5e-23
 Identities = 47/220 (21%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           S   +      E LQ L LS+N  +            +   LK L+L  N   +      
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSE--ELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 145 NTLTSLTTLILYSNSIEGS--GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
           + +  L  L L +  +  S    +        ++ L LS +  +++ S T       TNL
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNL 250

Query: 203 KELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNING 258
             LDL    +    +   A LP L+   L    I  +    L  L N+  L+L  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 259 SLESQGL--------ADLPNLKILDLRDCGMTTIQGKIFK 290
           S+    L          L  L+ L++ D  +  I+  +F 
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.7 bits (236), Expect = 5e-22
 Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 16/199 (8%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY 156
             +  + S                     + +L+L  N             + LT+L + 
Sbjct: 5   SHEVADCSHLKLTQV-------PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 157 SNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT-- 214
            N+I      +    L  L+VL+L  N  ++   L+    A  TNL EL L    I    
Sbjct: 58  FNTISKLEP-ELCQKLPMLKVLNLQHN-ELS--QLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 215 SQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNING-SLESQGLADLPNL 271
           +       NL TLDL   G+++       +L+NL+ L LS N I     E   +    +L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 272 KILDLRDCGMTTIQGKIFK 290
           K L+L    +       F 
Sbjct: 174 KKLELSSNQIKEFSPGCFH 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.1 bits (232), Expect = 2e-21
 Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 17/192 (8%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
             L  + F     LQ L L     +    + +   F  L+ L ILDL  N   +     L
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 145 NTLTSLTTLILYSNSIE-------GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLA 197
             L  L  L L  N++          G +  L  L +L +L+L  N       +      
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDE--IPVEVFK 557

Query: 198 NLTNLKELDLRGCGITTSQG--LADLPNLKTLDLRDCGITTIQGLA---KLKNLEALDLS 252
           +L  LK +DL    + T       +  +LK+L+L+   IT+++        +NL  LD+ 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 253 WNNINGSLESQG 264
           +N  + + ES  
Sbjct: 618 FNPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 200 TNLKELDLRGCGITT-SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNI 256
            + +  D     +T     L    N+  L+L    +  +      +   L +LD+ +N I
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 257 NGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           +  LE +    LP LK+L+L+   ++ +  K F
Sbjct: 62  SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 33/165 (20%), Positives = 48/165 (29%), Gaps = 8/165 (4%)

Query: 75  RLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN 134
            L    + +     +        L  LNL  N F         + F  L +LKI+DLG N
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI----PVEVFKDLFELKIIDLGLN 570

Query: 135 FFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL 194
             N       N   SL +L L  N I            R L  LD+ +N        +  
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN-PFDCTCESIA 629

Query: 195 GLANLTNLKELDLRG-CGITTSQGLADLPN--LKTLDLRDCGITT 236
              N  N    ++                   ++  D   C  + 
Sbjct: 630 WFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA 674

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  109 bits (276), Expect = 2e-28
 Identities = 73/300 (24%), Positives = 114/300 (38%), Gaps = 57/300 (19%)

Query: 7   CLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCD-DWEGVKCNATTR-- 63
           C   ++ ALL+IK           +   L SW+       +DCC+  W GV C+  T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLPT-----TDCCNRTWLGVLCDTDTQTY 50

Query: 64  RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD-NWFRGFYENKAYDSFGS 122
           RV  L L+    L       +SL N+        L  L +   N   G        +   
Sbjct: 51  RVNNLDLSGL-NLPKPYPIPSSLANLP------YLNFLYIGGINNLVG----PIPPAIAK 99

Query: 123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSW 182
           L QL  L +     + +I  +L+ + +L TL    N++ G+     +++L  L  +    
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDG 158

Query: 183 NENITS------GSLTRLG-----------------LANLTNLKELDLRGCGIT--TSQG 217
           N  I+       GS ++L                   ANL NL  +DL    +    S  
Sbjct: 159 N-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216

Query: 218 LADLPNLKTLDLRDCGIT-TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
                N + + L    +   +  +   KNL  LDL  N I G+L  QGL  L  L  L++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
            Q ++L+ N              G  K L  LDL  N    ++   L  L  L +L +  
Sbjct: 223 TQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSL 191
           N++ G     G  NL+   V   + N+ +    L
Sbjct: 278 NNLCGEIPQGG--NLQRFDVSAYANNKCLCGSPL 309

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  111 bits (280), Expect = 3e-28
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 36/222 (16%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTT 152
               + LNL +N  +    +    +F  L  L++L LG N  +   +     N L SL T
Sbjct: 74  PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNT 127

Query: 153 LILYSNSIEG--SGTMQGLANLRYL---------------------QVLDLSWNENITSG 189
           L L+ N +    SG  + L+ LR L                       LDL   + +   
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY- 186

Query: 190 SLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLE 247
            ++      L NLK L+L  C I     L  L  L+ L++       I+      L +L+
Sbjct: 187 -ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 248 ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
            L +  + ++  +E      L +L  L+L    ++++   +F
Sbjct: 246 KLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 3e-21
 Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 19/180 (10%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY- 143
           +++    F    +L+ L L +N            +F  +  L  LDLG     + I    
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN--ENITSGSLTRLGLANLTN 201
              L +L  L L   +I+    M  L  L  L+ L++S N    I  GS        L++
Sbjct: 192 FEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPGSFH-----GLSS 243

Query: 202 LKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNIN 257
           LK+L +    ++         L +L  L+L    ++++       L+ L  L L  N  N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.7 bits (220), Expect = 4e-20
 Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 18/174 (10%)

Query: 125 QLKILDLGCNFFNDSILPY-LNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLS 181
             + L+L  N     I       L  L  L L  NSI     G   GLA+L  L   +L 
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL---ELF 131

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCG-ITTIQ 238
            N  +T   +       L+ L+EL LR   I +  S     +P+L  LDL +   +  I 
Sbjct: 132 DN-WLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 239 G--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                 L NL+ L+L   NI    +   L  L  L+ L++       I+   F 
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 200 TNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNN 255
           +N + L+L    I    +     L +L+ L L    I  I+      L +L  L+L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +   + S     L  L+ L LR+  + +I    F 
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (278), Expect = 4e-28
 Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 36/222 (16%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTT 152
               + LNL +N  +    N    SF  L+ L+IL L  N  +   +     N L +L T
Sbjct: 63  STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNT 116

Query: 153 LILYSNSIEG--SGTMQGLANLRYL---------------------QVLDLSWNENITSG 189
           L L+ N +    +G    L+ L+ L                     + LDL   + ++  
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY- 175

Query: 190 SLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLE 247
            ++      L+NL+ L+L  C +     L  L  L  LDL    ++ I+      L +L+
Sbjct: 176 -ISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 248 ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
            L +  + I   +E     +L +L  ++L    +T +   +F
Sbjct: 235 KLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 7e-22
 Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-NTLTSL 150
           F+    L +L L DN            +F  L +LK L L  N    SI  Y  N + SL
Sbjct: 108 FNGLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSL 162

Query: 151 TTLILYS-NSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELD 206
             L L     +     G  +GL+NLRYL   +L+        +L  +  L  L  L ELD
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYL---NLAMC------NLREIPNLTPLIKLDELD 213

Query: 207 LRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLES 262
           L G  ++         L +L+ L +    I  I+      L++L  ++L+ NN+   L  
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH 272

Query: 263 QGLADLPNLKILDLR------DCGM 281
                L +L+ + L       +C +
Sbjct: 273 DLFTPLHHLERIHLHHNPWNCNCDI 297

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 18/174 (10%)

Query: 125 QLKILDLGCNFFNDSILPY-LNTLTSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLS 181
             ++L+L  N     I       L  L  L L  N I     G   GLANL  L   +L 
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL---ELF 120

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDC-GITTIQ 238
            N  +T+  +       L+ LKEL LR   I +  S     +P+L+ LDL +   ++ I 
Sbjct: 121 DN-RLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 239 G--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                 L NL  L+L+  N+    E   L  L  L  LDL    ++ I+   F+
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.1 bits (164), Expect = 8e-13
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 200 TNLKELDLRGCGITTSQG--LADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNN 255
           TN + L+L    I   +      L +L+ L L    I TI+      L NL  L+L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +  ++ +     L  LK L LR+  + +I    F 
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 39/152 (25%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENK----AYDSFGSLKQLKILDLGCNFFNDSI 140
             +    F+    L+ L+L +         +    +  +F  L  L+ L+L      +  
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGEL-------KRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199

Query: 141 LPYLNTLTSLTTLILYSNSIE--GSGTMQGLANLRYL---------------------QV 177
           +P L  L  L  L L  N +     G+ QGL +L+ L                       
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 178 LDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
           ++L+ N N+T   L       L +L+ + L  
Sbjct: 260 INLAHN-NLTL--LPHDLFTPLHHLERIHLHH 288

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  107 bits (269), Expect = 6e-28
 Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 20/184 (10%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
                  NL               S   L  ++  +   +      L  +   T+L  L 
Sbjct: 18  LANAVKQNLGKQ------SVTDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
           L  N I     +  L +L  L+ L ++ N       L  L       L  L L    +  
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNR------LKNLNGIPSACLSRLFLDNNELRD 120

Query: 215 SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKIL 274
           +  L  L NL+ L +R+  + +I  L  L  LE LDL  N I     + GL  L  +  +
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWI 177

Query: 275 DLRD 278
           DL  
Sbjct: 178 DLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  102 bits (255), Expect = 8e-26
 Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 14/165 (8%)

Query: 122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLS 181
            L      +LG     D  L     L+ +      +++I+   ++ G+     L+ L LS
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLS 71

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLA 241
            N  I+  S     L +LT L+EL +    +    G+     L  L L +  +     L 
Sbjct: 72  HN-QISDLS----PLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLI 125

Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286
            LKNLE L +  N +  S+    L  L  L++LDL    +T   G
Sbjct: 126 HLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 12/143 (8%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
              L +     L   S+     +     L  +Q  +   + NI S +    G+   TNLK
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNS-NIQSLA----GMQFFTNLK 66

Query: 204 ELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQ 263
           EL L    I+    L DL  L+ L +    +  + G+     L  L L  N +    ++ 
Sbjct: 67  ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELR---DTD 122

Query: 264 GLADLPNLKILDLRDCGMTTIQG 286
            L  L NL+IL +R+  + +I  
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVM 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 41/194 (21%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
           +++    F  L+ L+LS N      +         L +L+ L +  N      L  + + 
Sbjct: 55  SLAGMQFFTNLKELHLSHN------QISDLSPLKDLTKLEELSVNRN--RLKNLNGIPSA 106

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
             L+ L L +N +        L +L+ L++L +  N  + S       L  L+ L+ LDL
Sbjct: 107 C-LSRLFLDNNELR---DTDSLIHLKNLEILSIRNN-KLKSIV----MLGFLSKLEVLDL 157

Query: 208 RGCGITTSQGLADLPNLKTLDLRDCGIT------------------------TIQGLAKL 243
            G  IT + GL  L  +  +DL                              +   ++  
Sbjct: 158 HGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNG 217

Query: 244 KNLEALDLSWNNIN 257
            +     + W    
Sbjct: 218 GSYVDGCVLWELPV 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  109 bits (275), Expect = 2e-27
 Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 33/205 (16%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L+ L++S N                L  L+ L    N  +D  +  L  LT+L  L L  
Sbjct: 179 LERLDISSNKVSDI------SVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 230

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITS----GSLTRL--------------GLANL 199
           N ++    +  LA+L  L  LDL+ N  I++      LT+L               LA L
Sbjct: 231 NQLKD---IGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISPLAGL 286

Query: 200 TNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGS 259
           T L  L+L    +     +++L NL  L L    I+ I  ++ L  L+ L    N ++  
Sbjct: 287 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD- 345

Query: 260 LESQGLADLPNLKILDLRDCGMTTI 284
                LA+L N+  L      ++ +
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDL 368

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  109 bits (274), Expect = 3e-27
 Identities = 53/193 (27%), Positives = 79/193 (40%), Gaps = 19/193 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L  L+L+ N  +         +  SL  L  LDL  N  ++  L  L+ LT LT L L +
Sbjct: 223 LDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGA 274

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N I     +  LA L  L  L+L+ N  +   S     ++NL NL  L L    I+    
Sbjct: 275 NQISN---ISPLAGLTALTNLELNEN-QLEDIS----PISNLKNLTYLTLYFNNISDISP 326

Query: 218 LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277
           ++ L  L+ L   +  ++ +  LA L N+  L    N I+       LA+L  +  L L 
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLN 383

Query: 278 DCGMTTIQGKIFK 290
           D   T        
Sbjct: 384 DQAWTNAPVNYKA 396

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (273), Expect = 4e-27
 Identities = 57/205 (27%), Positives = 80/205 (39%), Gaps = 34/205 (16%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L  + +++N               +L  L  L L  N   D  +  L  LT+L  L L S
Sbjct: 92  LVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSS 143

Query: 158 NSIEGSGTMQGLANLRY------------------LQVLDLSWNENITSGSLTRLGLANL 199
           N+I     + GL +L+                   L+ LD+S N  ++  S     LA L
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDIS----VLAKL 198

Query: 200 TNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGS 259
           TNL+ L      I+    L  L NL  L L    +  I  LA L NL  LDL+ N I+  
Sbjct: 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN- 257

Query: 260 LESQGLADLPNLKILDLRDCGMTTI 284
                L+ L  L  L L    ++ I
Sbjct: 258 --LAPLSGLTKLTELKLGANQISNI 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  104 bits (262), Expect = 1e-25
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 20/192 (10%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
             E     L               S   L Q+  L           +  +  L +LT + 
Sbjct: 23  LAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
             +N +     +  L NL  L  + ++ N  I   +     LANLTNL  L L    IT 
Sbjct: 75  FSNNQLTD---ITPLKNLTKLVDILMNNN-QIADIT----PLANLTNLTGLTLFNNQITD 126

Query: 215 SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKIL 274
              L +L NL  L+L    I+ I  L+ L +L+ L    N +    + + LA+L  L+ L
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQV---TDLKPLANLTTLERL 182

Query: 275 DLRDCGMTTIQG 286
           D+    ++ I  
Sbjct: 183 DISSNKVSDISV 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  104 bits (261), Expect = 2e-25
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 20/192 (10%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
            +++ +L       +        D    L  L  ++   N   D  +  L  LT L  ++
Sbjct: 45  LDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDIL 96

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
           + +N I     +  LANL  L  L L  N  IT        L NLTNL  L+L    I+ 
Sbjct: 97  MNNNQIAD---ITPLANLTNLTGLTLFNN-QITDID----PLKNLTNLNRLELSSNTISD 148

Query: 215 SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKIL 274
              L+ L +L+ L      +T ++ LA L  LE LD+S N ++  +    LA L NL+ L
Sbjct: 149 ISALSGLTSLQQLSF-GNQVTDLKPLANLTTLERLDISSNKVS-DISV--LAKLTNLESL 204

Query: 275 DLRDCGMTTIQG 286
              +  ++ I  
Sbjct: 205 IATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (254), Expect = 2e-24
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVL 178
           +  +L +     LG     D        L  +TTL      I+   ++ G+  L  L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQ 238
           + S N  +T  +     L NLT L ++ +    I     LA+L NL  L L +  IT I 
Sbjct: 74  NFSNN-QLTDIT----PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 128

Query: 239 GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
            L  L NL  L+LS N I+       L+ L +L+ L  
Sbjct: 129 PLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (252), Expect = 2e-24
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 20/192 (10%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
            L ++        L  L+L++N                L +L  L LG N  ++  +  L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISN--ISPL 283

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
             LT+LT L L  N +E    +  ++NL+ L  L L +N NI+  S     +++LT L+ 
Sbjct: 284 AGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFN-NISDIS----PVSSLTKLQR 335

Query: 205 LDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQG 264
           L      ++    LA+L N+  L      I+ +  LA L  +  L L+      +  +  
Sbjct: 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY- 394

Query: 265 LADLPNLKILDL 276
                N+ I + 
Sbjct: 395 ---KANVSIPNT 403

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.3 bits (243), Expect = 5e-23
 Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 15/164 (9%)

Query: 121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDL 180
           G L    I        N   +     L      +L   ++  + +     +L  +  L  
Sbjct: 1   GPLGSATITQ--DTPINQ--IFTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQA 53

Query: 181 SWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGL 240
                I S      G+  L NL +++     +T    L +L  L  + + +  I  I  L
Sbjct: 54  DRL-GIKSID----GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPL 108

Query: 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
           A L NL  L L  N I        L +L NL  L+L    ++ I
Sbjct: 109 ANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISDI 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 4e-17
 Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 40/188 (21%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L  L L  N                L  L  L+L  N   D  +  ++ L +LT L LY 
Sbjct: 267 LTELKLGANQISNI------SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 318

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N+I     +  +++L  LQ L    N  ++  S     LANLTN+  L      I+    
Sbjct: 319 NNISD---ISPVSSLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHNQISDLTP 370

Query: 218 LADLPNLKTLDLRDCGITTIQG------------------------LAKLKNLEALDLSW 253
           LA+L  +  L L D   T                            ++   +    D++W
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430

Query: 254 NNINGSLE 261
           N  + + E
Sbjct: 431 NLPSYTNE 438

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 225 KTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
                +D  I  I     L       L   N+  ++      DL  +  L     G+ +I
Sbjct: 5   SATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSI 61

Query: 285 QG 286
            G
Sbjct: 62  DG 63

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (268), Expect = 2e-27
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 14/211 (6%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY- 143
             L   +F    +L  L+LS N            S      LK LDL  N      +   
Sbjct: 41  QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS--QSDFGTTSLKYLDLSFN--GVITMSSN 96

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
              L  L  L    ++++         +LR L  LD+S   +             L++L+
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRV--AFNGIFNGLSSLE 153

Query: 204 ELDLRGCGITTS---QGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNING 258
            L + G     +       +L NL  LDL  C +  +       L +L+ L++S NN   
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF- 212

Query: 259 SLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           SL++     L +L++LD     + T + +  
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.3 bits (248), Expect = 2e-24
 Identities = 41/174 (23%), Positives = 62/174 (35%), Gaps = 16/174 (9%)

Query: 126 LKILDLGCNFFNDSILPY-LNTLTSLTTLILYSNSIEGSGTMQG-LANLRYLQVLDLSWN 183
              L+L  N    S+     + LT LT L L SN +   G           L+ LDLS+N
Sbjct: 30  ATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 184 ENITSGSLTRL--GLANLTNLKELDLRGCGITT--SQGL-ADLPNLKTLDLRDCGITTIQ 238
                  +  +      L  L+ LD +   +       +   L NL  LD+         
Sbjct: 89  G------VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 239 G--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                 L +LE L ++ N+   +       +L NL  LDL  C +  +    F 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 1e-23
 Identities = 43/205 (20%), Positives = 69/205 (33%), Gaps = 20/205 (9%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP--YLNTLTSLTT 152
                 L L  N  +          F  L QL  L L  N  +            TSL  
Sbjct: 27  PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 153 LILYSNSIEG-SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGL-ANLTNLKELDLRGC 210
           L L  N +   S    GL  L +L   D   + N+    ++   +  +L NL  LD+   
Sbjct: 83  LDLSFNGVITMSSNFLGLEQLEHL---DFQHS-NLKQ--MSEFSVFLSLRNLIYLDISHT 136

Query: 211 GITT--SQGLADLPNLKTLDLRDC-GITTIQG--LAKLKNLEALDLSWNNINGSLESQGL 265
                 +     L +L+ L +               +L+NL  LDLS   +   L     
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAF 195

Query: 266 ADLPNLKILDLRDCGMTTIQGKIFK 290
             L +L++L++      ++    +K
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYK 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTS 149
           F   E+L+ L+   +  +   +   +  F SL+ L  LD+     +  +      N L+S
Sbjct: 97  FLGLEQLEHLDFQHSNLK---QMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSS 151

Query: 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
           L  L +  NS + +        LR L  LDLS    +    L+     +L++L+ L++  
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ--LSPTAFNSLSSLQVLNMSH 208

Query: 210 CGITTSQGLA--DLPNLKTLDLRDCGITTIQGLA---KLKNLEALDLSWNNIN 257
               +        L +L+ LD     I T +         +L  L+L+ N+  
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  102 bits (257), Expect = 7e-27
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 14/170 (8%)

Query: 119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVL 178
           +   +  L  + L      D  L  +    ++  L + +           ++ L  L+ L
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERL 93

Query: 179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQ--GLADLPNLKTLDLRDC-GIT 235
            +    ++TS  +    L+ LT+L  LD+       S    +  LP + ++DL     IT
Sbjct: 94  RIMGK-DVTSDKIP--NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 236 TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285
            I  L  L  L++L++ ++ ++   + +G+ D P L  L      +   +
Sbjct: 151 DIMPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  101 bits (254), Expect = 2e-26
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 13/162 (8%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L  + L++                    +K L +      +     ++ L++L  L +  
Sbjct: 46  LTYITLANINVTDL------TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG 97

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC-GITTSQ 216
             +  S  +  L+ L  L +LD+S +       LT   +  L  +  +DL     IT   
Sbjct: 98  KDV-TSDKIPNLSGLTSLTLLDISHS-AHDDSILT--KINTLPKVNSIDLSYNGAITDIM 153

Query: 217 GLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNING 258
            L  LP LK+L+++  G+   +G+     L  L      I G
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 96.2 bits (240), Expect = 3e-24
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
              ++ L +++           Y+    L  L+ L +         +P L+ LTSLT L 
Sbjct: 65  AHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
           +  ++ + S  +  +  L  +  +DLS+N  IT        L  L  LK L+++  G+  
Sbjct: 119 ISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHD 173

Query: 215 SQGLADLPNLKTLDLRDCGITTIQ 238
            +G+ D P L  L      I   +
Sbjct: 174 YRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 95.4 bits (238), Expect = 4e-24
 Identities = 34/169 (20%), Positives = 74/169 (43%), Gaps = 17/169 (10%)

Query: 122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLS 181
           + K      LG +   +        + SLT + L + ++     + G+     ++ L ++
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTIN 74

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITTSQ--GLADLPNLKTLDLRDCGIT--TI 237
              + T+ +     ++ L+NL+ L + G  +T+ +   L+ L +L  LD+         +
Sbjct: 75  NI-HATNYN----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 238 QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286
             +  L  + ++DLS+N     +    L  LP LK L+++  G+   +G
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRG 176

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  108 bits (271), Expect = 1e-26
 Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 12/229 (5%)

Query: 67  QLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQL 126
           Q      + L     TS    N         L+ L+LS N            S      L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTTSL 375

Query: 127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENI 186
           K LDL  N    ++      L  L  L    ++++         +LR L  LD+S   + 
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HT 433

Query: 187 TSGSLTRLGLANLTNLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGITTI--QGLA 241
                       L++L+ L + G     +       +L NL  LDL  C +  +      
Sbjct: 434 RV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
            L +L+ L++S NN            L +L++LD     + T + +  +
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 4e-24
 Identities = 51/212 (24%), Positives = 70/212 (33%), Gaps = 19/212 (8%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           ++  +  F      Q L L +  F  F           LK LK L    N          
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGG--NAFSE 343

Query: 145 NTLTSLTTLILYSNSIEGSG-TMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
             L SL  L L  N +   G   Q       L+ LDLS+N  IT  S        L  L+
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLE 399

Query: 204 ELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNING 258
            LD +   +           L NL  LD+               L +LE L ++ N+   
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 259 SLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +       +L NL  LDL  C +  +    F 
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 19/194 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
            ++L+LS N  R         SF S  +L++LDL              +L+ L+TLIL  
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT--- 214
           N I+    +   + L  LQ L      N+   SL    + +L  LKEL++    I +   
Sbjct: 86  NPIQSL-ALGAFSGLSSLQKLVAVET-NLA--SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 215 SQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLEA----LDLSWNNINGSLESQGLADL 268
            +  ++L NL+ LDL    I +I    L  L  +      LDLS N +N  ++     ++
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI 200

Query: 269 PNLKILDLRDCGMT 282
             L  L LR+   +
Sbjct: 201 -RLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 2e-23
 Identities = 42/194 (21%), Positives = 70/194 (36%), Gaps = 13/194 (6%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLT 148
                   L+ L+LS N       N     F  L+QL+ LD   +            +L 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 149 SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
           +L  L +       +        L  L+VL ++ N +     L  +    L NL  LDL 
Sbjct: 422 NLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGN-SFQENFLPDI-FTELRNLTFLDLS 478

Query: 209 GCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
            C +          L +L+ L++      ++       L +L+ LD S N+I  S + + 
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 265 LADLPNLKILDLRD 278
                +L  L+L  
Sbjct: 539 QHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.1 bits (237), Expect = 3e-22
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 12/192 (6%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
           F   E+L+ L+   +  +   E   +  F SL+ L  LD+       +     N L+SL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG 211
            L +  NS + +        LR L  LDLS    +    L+     +L++L+ L++    
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLE--QLSPTAFNSLSSLQVLNMSHNN 505

Query: 212 ITTSQG--LADLPNLKTLDLRDCGITTIQGLA---KLKNLEALDLSWNNINGSLESQGLA 266
             +        L +L+ LD     I T +         +L  L+L+ N+   + E Q   
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565

Query: 267 D-LPNLKILDLR 277
             + + + L + 
Sbjct: 566 QWIKDQRQLLVE 577

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 41/189 (21%), Positives = 65/189 (34%), Gaps = 26/189 (13%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTS 149
             +     L +L L+ N  +         +F  L  L+ L              +  L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
           L  L +  N I+     +  +NL  L+ LDLS N  I   S+    L  L  +  L+L  
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQ--SIYCTDLRVLHQMPLLNL-- 180

Query: 210 CGITTSQGLADLPNLKTLDLRDCGITTIQ-GLAKLKNLEALDLSWNNINGSLESQGLADL 268
                           +LDL    +  IQ G  K   L  L L  N  + ++    +  L
Sbjct: 181 ----------------SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 269 PNLKILDLR 277
             L++  L 
Sbjct: 225 AGLEVHRLV 233

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 43/233 (18%), Positives = 71/233 (30%), Gaps = 37/233 (15%)

Query: 90  SLFHPFEELQ----SLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-L 144
           +      ++     SL+LS N            +F  ++ L  L L  NF + +++   +
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPG----AFKEIR-LHKLTLRNNFDSLNVMKTCI 221

Query: 145 NTLTSLTTLILYSNSIEGSGTMQG-----LANLRYLQVLDLSWNENITSGSLTRLGLANL 199
             L  L    L        G ++      L  L  L + +                   L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 200 TNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTI---------------------Q 238
           TN+    L    I   +  +     + L+L +C                           
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 239 GLAKLKNLEALDLSWNNINGS-LESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
               L +LE LDLS N ++     SQ      +LK LDL   G+ T+      
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 200 TNLKELDLRGCGITTSQG--LADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNN 255
            + K LDL    +           P L+ LDL  C I TI       L +L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           I   L     + L +L+ L   +  + +++     
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLENFPIG 121

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (263), Expect = 1e-26
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 35/221 (15%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTS 149
           SL      ++ L+LS N                  +L++L+L  N   +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN--ENITSG---SLTRLGL-------- 196
           L TL L +N +      Q L     ++ L  + N    ++         + L        
Sbjct: 82  LRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 197 -----ANLTNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA 248
                   + ++ LDL+   I T   ++  A    L+ L+L+   I  ++G      L+ 
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195

Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           LDLS N +   +          +  + LR+  +  I+  + 
Sbjct: 196 LDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLVLIEKALR 234

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 5e-25
 Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 18/201 (8%)

Query: 91  LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSL 150
           +       +   ++D+  +    +       S   +K LDL  N  +      L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 151 TTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC 210
             L L SN +        L +L  L+ LDL+ N  +         L    +++ L     
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNN-YVQE-------LLVGPSIETLHAANN 109

Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSLESQGLADL 268
            I+           K + L +  IT ++ L       ++ LDL  N I+    ++  A  
Sbjct: 110 NISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 269 PNLKILDLRDCGMTTIQGKIF 289
             L+ L+L+   +  ++G++ 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVV 189

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 13/173 (7%)

Query: 118 DSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV 177
           +   +  + KI  +  +    ++     +  ++  L L  N +        LA    L++
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 178 LDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT 236
           L+LS N       L     L +L+ L+ LDL    +     L   P+++TL   +  I+ 
Sbjct: 63  LNLSSNV------LYETLDLESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISR 113

Query: 237 IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           +   ++ +  + + L+ N I   L          ++ LDL+   + T+     
Sbjct: 114 VS-CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 7e-22
 Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 16/184 (8%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           +++L+ ++N            S    +  K + L  N             + +  L L  
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCGITT-S 215
           N I+     +  A+   L+ L+L +N       +  + G      LK LDL    +    
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN------FIYDVKGQVVFAKLKTLDLSSNKLAFMG 207

Query: 216 QGLADLPNLKTLDLRDCGITTIQ-GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKIL 274
                   +  + LR+  +  I+  L   +NLE  DL  N  +        +    ++ +
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 275 DLRD 278
             + 
Sbjct: 268 AKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND-SILPYLNTLTSLTTL 153
            +  +++ L++N      +       G   +++ LDL  N  +  +      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 154 ILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL--GLANLTNLKELDLRGCG 211
            L  N I     ++G      L+ LDLS N+      L  +     +   +  + LR   
Sbjct: 175 NLQYNFIY---DVKGQVVFAKLKTLDLSSNK------LAFMGPEFQSAAGVTWISLRNNK 225

Query: 212 ITT-SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
           +    + L    NL+  DLR  G            L         +  ++  Q +  L  
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCG-------TLRDFFSKNQRVQ-TVAKQTVKKLTG 277

Query: 271 LKILDLR 277
               +  
Sbjct: 278 QNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 17/134 (12%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L++L+LS N             F S   +  + L  N     I   L    +L    L  
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N           +  + +Q +     + +T  +     +  L +                
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE--------- 297

Query: 218 LADLPNLKTLDLRD 231
             DLP      L  
Sbjct: 298 --DLPAPFADRLIA 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (269), Expect = 1e-26
 Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 19/208 (9%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLT 148
            +F     L+SL + DN         ++ +F  L  L+ L L       SI    L+ L 
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYI----SHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 149 SLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
            L  L L   +I      + + L  L+ L   ++S    + + +          NL  L 
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVL---EISHWPYLDTMTP---NCLYGLNLTSLS 230

Query: 207 LRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLES 262
           +  C +T      +  L  L+ L+L    I+TI+G  L +L  L+ + L    +   +E 
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEP 289

Query: 263 QGLADLPNLKILDLRDCGMTTIQGKIFK 290
                L  L++L++    +TT++  +F 
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFH 317

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (262), Expect = 1e-25
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 21/212 (9%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--L 144
           LN   F  F  L+ L L++N            +F +L  L+ L L  N     ++P    
Sbjct: 47  LNQDEFASFPHLEELELNENIVSAV----EPGAFNNLFNLRTLGLRSNRL--KLIPLGVF 100

Query: 145 NTLTSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
             L++LT L +  N I        Q L N   L+ L++  N ++    ++    + L +L
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYN---LKSLEVGDN-DLV--YISHRAFSGLNSL 154

Query: 203 KELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNING 258
           ++L L  C +T+  ++ L+ L  L  L LR   I  I+     +L  L+ L++S      
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 259 SLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           ++    L  L NL  L +  C +T +     +
Sbjct: 215 TMTPNCLYGL-NLTSLSITHCNLTAVPYLAVR 245

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (252), Expect = 3e-24
 Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 19/197 (9%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSLTTL 153
             E + L+L  N  +   +    D F S   L+ L+L  N    ++ P   N L +L TL
Sbjct: 31  PTETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTL 85

Query: 154 ILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG 211
            L SN ++    G   GL+NL     LD+S N  I    L      +L NLK L++    
Sbjct: 86  GLRSNRLKLIPLGVFTGLSNLTK---LDISEN-KIV--ILLDYMFQDLYNLKSLEVGDND 139

Query: 212 ITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQGLAD 267
           +     +  + L +L+ L L  C +T+I    L+ L  L  L L   NIN ++       
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKR 198

Query: 268 LPNLKILDLRDCGMTTI 284
           L  LK+L++        
Sbjct: 199 LYRLKVLEISHWPYLDT 215

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 3e-20
 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           + +          L  L L         +     SF  L +LK+L++    + D++ P  
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 145 NTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNE--NITSGSLTRLGLANLT 200
               +LT+L +   ++          + +L YL+ L+LS+N    I         L  L 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLA---VRHLVYLRFLNLSYNPISTIEGSM-----LHELL 272

Query: 201 NLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNI 256
            L+E+ L G  +          L  L+ L++    +TT++      + NLE L L  N +
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

Query: 257 N 257
            
Sbjct: 333 A 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.0 bits (221), Expect = 3e-20
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 9/146 (6%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
           T    L L  N I+ +      A+  +L+ L+L+ N  ++  ++      NL NL+ L L
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN-IVS--AVEPGAFNNLFNLRTLGL 87

Query: 208 RGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQ 263
           R   +          L NL  LD+ +  I  +       L NL++L++  N++   +  +
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146

Query: 264 GLADLPNLKILDLRDCGMTTIQGKIF 289
             + L +L+ L L  C +T+I  +  
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEAL 172

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 8/120 (6%)

Query: 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDC 232
            ++LDL  N  I +  L +   A+  +L+EL+L    ++        +L NL+TL LR  
Sbjct: 34  TRLLDLGKN-RIKT--LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 233 GITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
            +  I       L NL  LD+S N I   L      DL NLK L++ D  +  I  + F 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 200 TNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNN 255
           T  + LDL    I T      A  P+L+ L+L +  ++ ++      L NL  L L  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +   +       L NL  LD+ +  +  +   +F+
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 214 TSQGLADLP-----NLKTLDLRDCGITTIQ--GLAKLKNLEALDLSWNNINGSLESQGLA 266
             +    +P       + LDL    I T+     A   +LE L+L+ N +  ++E     
Sbjct: 19  HRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFN 77

Query: 267 DLPNLKILDLRDCGMTTIQGKIFK 290
           +L NL+ L LR   +  I   +F 
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFT 101

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 222 PNLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG 280
              + +         + +G+        LDL  N I  +L     A  P+L+ L+L +  
Sbjct: 11  AQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENI 67

Query: 281 MTTIQGKIFK 290
           ++ ++   F 
Sbjct: 68  VSAVEPGAFN 77

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (270), Expect = 2e-26
 Identities = 48/204 (23%), Positives = 71/204 (34%), Gaps = 12/204 (5%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
                 L  L+LS N            S      L+ LDL  N     +      L  L 
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCS--YSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ 402

Query: 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG 211
            L    ++++         +L  L  LD+S+  N             LT+L  L + G  
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKI--DFDGIFLGLTSLNTLKMAGNS 459

Query: 212 ITT---SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQGLA 266
                 S   A+  NL  LDL  C +  I       L  L+ L++S NN+   L+S    
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYN 518

Query: 267 DLPNLKILDLRDCGMTTIQGKIFK 290
            L +L  LD     + T +G +  
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQH 542

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (268), Expect = 3e-26
 Identities = 50/213 (23%), Positives = 75/213 (35%), Gaps = 21/213 (9%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           S+  +       + QSL++     + F           L  LK L L  N    SI    
Sbjct: 296 SIKYLEDVPKHFKWQSLSIIRCQLKQF-------PTLDLPFLKSLTLTMNKG--SISFKK 346

Query: 145 NTLTSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
             L SL+ L L  N++   G  +   L     L+ LDLS+N  I   +        L  L
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAIIMSA----NFMGLEEL 401

Query: 203 KELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNIN 257
           + LD +   +           L  L  LD+               L +L  L ++ N+  
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 258 GSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
            +  S   A+  NL  LDL  C +  I   +F 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 4e-24
 Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 14/192 (7%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
           F  F ELQ L+LS        +     ++  L  L  L L  N          + LTSL 
Sbjct: 52  FSNFSELQWLDLSRCEIETIED----KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG 211
            L+     +    +   +  L  L+ L+++ N  I S  L     +NLTNL  +DL    
Sbjct: 108 NLVAVETKLASLES-FPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNY 164

Query: 212 IT-----TSQGLADLP-NLKTLDLRDCGITTIQGLA-KLKNLEALDLSWNNINGSLESQG 264
           I        Q L + P    +LD+    I  IQ  A +   L  L L  N  + ++    
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 265 LADLPNLKILDL 276
           L +L  L +  L
Sbjct: 225 LQNLAGLHVHRL 236

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 19/198 (9%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
               ++++LS N  +         SF +  +L+ LDL             + L  L+ LI
Sbjct: 31  PSSTKNIDLSFNPLKILKSY----SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
           L  N I+        + L  L+ L       +   SL    +  L  LK+L++    I +
Sbjct: 87  LTGNPIQSFSP-GSFSGLTSLENLVAVET-KLA--SLESFPIGQLITLKKLNVAHNFIHS 142

Query: 215 ---SQGLADLPNLKTLDLRDCGITTI-----QGLAKLK-NLEALDLSWNNINGSLESQGL 265
                  ++L NL  +DL    I TI     Q L +      +LD+S N I+  ++ Q  
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 266 ADLPNLKILDLRDCGMTT 283
             +  L  L LR    ++
Sbjct: 202 QGI-KLHELTLRGNFNSS 218

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 7e-21
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 10/172 (5%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTS 149
           + F   EELQ L+   +  +   E     +F SL++L  LD+               LTS
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
           L TL +  NS + +      AN   L  LDLS    +    ++      L  L+ L++  
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLE--QISWGVFDTLHRLQLLNMSH 506

Query: 210 CGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNIN 257
             +    S     L +L TLD     I T +G      K+L   +L+ N++ 
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 14/174 (8%)

Query: 126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNEN 185
            K +DL  N          +  + L  L L    IE     +    L +L  L L+ N  
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGN-P 91

Query: 186 ITSGSLTRLGLANLTNLKELDLRGCGITTSQG--LADLPNLKTLDLRDCGITTIQ---GL 240
           I S   +    + LT+L+ L      + + +   +  L  LK L++    I + +     
Sbjct: 92  IQS--FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKI----LDLRDCGMTTIQGKIFK 290
           + L NL  +DLS+N I  ++    L  L         LD+    +  IQ + F+
Sbjct: 150 SNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.5 bits (225), Expect = 1e-20
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
           +S   + L  N ++   +    +N   LQ LDLS    I +  +       L +L  L L
Sbjct: 32  SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRC-EIET--IEDKAWHGLHHLSNLIL 87

Query: 208 RGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQ 263
            G  I +      + L +L+ L   +  + +++   + +L  L+ L+++ N I+      
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 264 GLADLPNLKILDLRDCGMTTIQGKIFK 290
             ++L NL  +DL    + TI     +
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQ 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 32/223 (14%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-YLN 145
            +   F     L++L   +               G L  LK L++  NF +   LP Y +
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 146 TLTSLTTLILYSNSIEG--SGTMQGLANLRY-LQVLDLSWN--ENITSGSLTRLGLANLT 200
            LT+L  + L  N I+      +Q L         LD+S N  + I   +          
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF------QGI 204

Query: 201 NLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGIT-----------TIQGLAKLKNL 246
            L EL LRG   +++     L +L  L    L                  ++GL  +   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           E   L++ N   S +      L N+  + L    +  ++    
Sbjct: 265 E-FRLTYTNDF-SDDIVKFHCLANVSAMSLAGVSIKYLEDVPK 305

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.8 bits (205), Expect = 6e-18
 Identities = 38/202 (18%), Positives = 62/202 (30%), Gaps = 12/202 (5%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTS 149
           + F     L  ++LS N+ +    N       + +    LD+  N  +  I         
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205

Query: 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL-----KE 204
           L  L L  N    +     L NL  L V  L   E     +L     + +  L      E
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 205 LDLRGCGITTSQ--GLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLES 262
             L      +        L N+  + L    I  ++ + K    ++L +    +      
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT- 324

Query: 263 QGLADLPNLKILDLRDCGMTTI 284
               DLP LK L L     +  
Sbjct: 325 ---LDLPFLKSLTLTMNKGSIS 343

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY- 143
            +   S F   E+L  L++S    +  ++      F  L  L  L +  N F D+ L   
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 144 LNTLTSLTTLILYSNSIEG--SGTMQGLANLRY---------------------LQVLDL 180
               T+LT L L    +E    G    L  L+                      L  LD 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 181 SWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLP---NLKTLDLRDCGITTI 237
           S+N  I +     +      +L   +L    +               +   L +    T 
Sbjct: 529 SFN-RIET--SKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTC 585

Query: 238 QGLAKLKNLEALDLS 252
               ++     LD +
Sbjct: 586 ATPVEMNTSLVLDFN 600

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (260), Expect = 4e-26
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 19/205 (9%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           +    F   + L +L L +N            +F  L +L+ L L  N      LP    
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQL--KELP-EKM 119

Query: 147 LTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
             +L  L ++ N I         GL  +    V++L  N  + S  +       +  L  
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQM---IVVELGTN-PLKSSGIENGAFQGMKKLSY 175

Query: 205 LDLRGCGITT-SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLE 261
           + +    ITT  QGL   P+L  L L    IT +    L  L NL  L LS+N+I+ +++
Sbjct: 176 IRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVD 232

Query: 262 SQGLADLPNLKILDLRDCGMTTIQG 286
           +  LA+ P+L+ L L +  +  + G
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 3e-23
 Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 23/206 (11%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           + +  S+F+   ++  + L  N  +         +F  +K+L  + +       + +P  
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIEN--GAFQGMKKLSYIRIADTNI--TTIP-Q 188

Query: 145 NTLTSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
               SLT L L  N I    + +++GL N   L  L LS+N +I+  ++    LAN  +L
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNN---LAKLGLSFN-SIS--AVDNGSLANTPHL 242

Query: 203 KELDLRGCGITT-SQGLADLPNLKTLDLRDCGITTIQG--------LAKLKNLEALDLSW 253
           +EL L    +     GLAD   ++ + L +  I+ I            K  +   + L  
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 254 NNIN-GSLESQGLADLPNLKILDLRD 278
           N +    ++      +     + L +
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.4 bits (230), Expect = 7e-22
 Identities = 43/203 (21%), Positives = 70/203 (34%), Gaps = 23/203 (11%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSLTTL 153
             +   L+L +N      +      F +LK L  L L  N  +  I P     L  L  L
Sbjct: 51  PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERL 105

Query: 154 ILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG 211
            L  N ++             + LQ L +  N  IT   + +     L  +  ++L    
Sbjct: 106 YLSKNQLKELPEKM------PKTLQELRVHEN-EITK--VRKSVFNGLNQMIVVELGTNP 156

Query: 212 ITTSQ----GLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD 267
           + +S         +  L  + + D  ITTI       +L  L L  N I   +++  L  
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKIT-KVDAASLKG 214

Query: 268 LPNLKILDLRDCGMTTIQGKIFK 290
           L NL  L L    ++ +      
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLA 237

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.9 bits (221), Expect = 1e-20
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 21/194 (10%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTT 152
            + LQ L + +N      ++     F  L Q+ +++LG N    S +       +  L+ 
Sbjct: 120 PKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 153 LILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI 212
           + +   +I    T+        L  L L  N  IT   +    L  L NL +L L    I
Sbjct: 176 IRIADTNIT---TIPQGL-PPSLTELHLDGN-KITK--VDAASLKGLNNLAKLGLSFNSI 228

Query: 213 TT--SQGLADLPNLKTLDLRDCGITTIQ-GLAKLKNLEALDLSWNNI-----NGSLESQG 264
           +   +  LA+ P+L+ L L +  +  +  GLA  K ++ + L  NNI     N       
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 265 LADLPNLKILDLRD 278
                +   + L  
Sbjct: 289 NTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 223 NLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGM 281
           +L+ +   D G+  + + L    +   LDL  N I   ++     +L NL  L L +  +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 282 TTIQGKIFK 290
           + I    F 
Sbjct: 89  SKISPGAFA 97

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 17/123 (13%), Positives = 27/123 (21%), Gaps = 36/123 (29%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
                 L  L LS N            S  +   L+ L L  N     +   L     + 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266

Query: 152 TLILYSNSIE--------GSGTMQGLANLRY-----------------------LQVLDL 180
            + L++N+I           G     A+                             + L
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326

Query: 181 SWN 183
              
Sbjct: 327 GNY 329

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (258), Expect = 5e-25
 Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 28/225 (12%)

Query: 75  RLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN 134
           R  +  +        +++   E+++ + + ++       +        LK L+ LDL  N
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS----FSQHLKSLEFLDLSEN 344

Query: 135 FFNDSILPY---LNTLTSLTTLILYSNSIEGSGTMQGL-ANLRYLQVLDLSWNE------ 184
              +  L          SL TL+L  N +        +   L+ L  LD+S N       
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 185 -----------NITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCG 233
                      N++S  +  +       L+ LD+    + +      LP L+ L +    
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNK 462

Query: 234 ITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
           + T+   +    L  + +S N +  S+       L +L+ + L  
Sbjct: 463 LKTLPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 1e-19
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 16/184 (8%)

Query: 82  TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141
               L N +    +  LQ+L LS N  R     K  +   +LK L  LD+  N F+  + 
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSM--QKTGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN 201
                   +  L L S  I     +      + L+VLD+S N      +L       L  
Sbjct: 404 DSCQWPEKMRFLNLSSTGI----RVVKTCIPQTLEVLDVSNN------NLDSFS-LFLPR 452

Query: 202 LKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGS 259
           L+EL +    + T    +  P L  + +    + ++      +L +L+ + L  N  + S
Sbjct: 453 LQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512

Query: 260 LESQ 263
               
Sbjct: 513 CPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 2e-19
 Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 11/210 (5%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           + +          LQ L L  +           D+F SL  L+ LDL  N  +     + 
Sbjct: 39  TYIGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
             L+SL  L L  N  +  G      NL  LQ L +   E  +   + R+  A LT+L E
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS--EIRRIDFAGLTSLNE 152

Query: 205 LDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSL 260
           L+++   +    SQ L  + ++  L L       +  +    L ++  L+L   N+    
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RF 211

Query: 261 ESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +   L        +       + +  + F 
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 23/232 (9%)

Query: 75  RLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN 134
            L  +  +   +  +S        +   L+D  F      K       L +++  D   N
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL--KLLRYILELSEVEFDDCTLN 264

Query: 135 ---FFNDSILPYLNTLTSLTTLILYSNSIEG----SGTMQGLANLRYLQVLDLSWNENIT 187
               FN S    ++ L  + T+ +    I             + L  ++ + +  +  + 
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVF 323

Query: 188 SGSLTRLGLANLTNLKELDLRGCGIT-----TSQGLADLPNLKTLDLRDCGITTIQG--- 239
              +      +L +L+ LDL    +       S      P+L+TL L    + ++Q    
Sbjct: 324 L--VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 240 -LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
            L  LKNL +LD+S N  +   +         ++ L+L   G+  ++  I +
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPD--SCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 15/173 (8%)

Query: 126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWN 183
           +K LDL  N         L    +L  LIL S+ I          L +L +L   DLS N
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL---DLSDN 84

Query: 184 ENITSGSLTRLGLANLTNLKELDLRGCGITT---SQGLADLPNLKTLDLRDC-GITTIQG 239
            +++S  L+      L++LK L+L G    T   +    +L NL+TL + +    + I+ 
Sbjct: 85  -HLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 240 --LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
              A L +L  L++   ++  + +SQ L  + ++  L L       +      
Sbjct: 142 IDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.2 bits (206), Expect = 3e-18
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 9/151 (5%)

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
               ++ +L L  N I        L     LQVL L  +  I +  +      +L +L+ 
Sbjct: 23  GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS-RINT--IEGDAFYSLGSLEH 78

Query: 205 LDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG---LAKLKNLEALDLSWNNINGS 259
           LDL    +++  S     L +LK L+L      T+        L NL+ L +        
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 260 LESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +     A L +L  L+++   +   Q +  K
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 48/256 (18%)

Query: 74  ERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGC 133
           + L   +  + S +    F     L  L +     R +       S  S++ +  L L  
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHHLTLHL 181

Query: 134 NFFNDSILPYLNTLTSLTTLILYSNSIEG------------------------------- 162
           +     +  + + L+S+  L L   ++                                 
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 163 --SGTMQGLANLRYLQVLDLSWNE-----NITSGSLTRLGLANLTNLKELDLRGCGITTS 215
                ++ +  L  ++  D + N         S  ++ LG      ++ L +    +   
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 216 QG--LADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNI--NGSLESQGLADLP 269
                + L  +K + + +  +  +       LK+LE LDLS N +       S      P
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 270 NLKILDLRDCGMTTIQ 285
           +L+ L L    + ++Q
Sbjct: 362 SLQTLVLSQNHLRSMQ 377

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 39/250 (15%), Positives = 74/250 (29%), Gaps = 53/250 (21%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-YLN 145
           L+ S F P   L+ LNL  N ++          F +L  L+ L +G       I      
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL---FPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 146 TLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
            LTSL  L + + S+    S +   L ++R +  L L  +E+     +    L+++  L+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQS---LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 204 ELDLRGCGITTSQG-----------------------------------------LADLP 222
             D        S                                             D  
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 223 NLKTLDLRDCGITTIQGLAKLK--NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG 280
                D        +  L K++   +  L +    +     S   + L  +K + + +  
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSK 321

Query: 281 MTTIQGKIFK 290
           +  +     +
Sbjct: 322 VFLVPCSFSQ 331

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 2e-24
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 35/221 (15%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTS 149
           SL      ++ L+LS N                  +L++L+L  N   +     L +L++
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN--ENITSGSLTRL------------- 194
           L TL L +N +      Q L     ++ L  + N    ++                    
Sbjct: 82  LRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 195 ---GLANLTNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA 248
                   + ++ LDL+   I T   ++  A    L+ L+L+   I  ++G      L+ 
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT 195

Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           LDLS N +   +          +  + LR+  +  I+  + 
Sbjct: 196 LDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLVLIEKALR 234

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.8 bits (246), Expect = 1e-23
 Identities = 38/201 (18%), Positives = 76/201 (37%), Gaps = 18/201 (8%)

Query: 91  LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSL 150
           +       +   ++D+  +    +       S   +K LDL  N  +      L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 151 TTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC 210
             L L SN +  +  ++ L+    L+ LDL+ N  +         L    +++ L     
Sbjct: 61  ELLNLSSNVLYETLDLESLST---LRTLDLNNN-YVQE-------LLVGPSIETLHAANN 109

Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSLESQGLADL 268
            I+           K + L +  IT ++ L       ++ LDL  N I+    ++  A  
Sbjct: 110 NISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 269 PNLKILDLRDCGMTTIQGKIF 289
             L+ L+L+   +  ++G++ 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVV 189

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 4e-21
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 13/173 (7%)

Query: 118 DSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV 177
           +   +  + KI  +  +    ++     +  ++  L L  N +        LA    L++
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 178 LDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT 236
           L+LS N       L     L +L+ L+ LDL    +     L   P+++TL   +  I+ 
Sbjct: 63  LNLSSNV------LYETLDLESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISR 113

Query: 237 IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           +   ++ +  + + L+ N I   L          ++ LDL+   + T+     
Sbjct: 114 VS-CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 22/196 (11%), Positives = 48/196 (24%), Gaps = 10/196 (5%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L++L+LS N             F S   +  + L  N     I   L    +L    L  
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG 217
           N           +  + +Q +     + +T  +     +  L +             +  
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 218 LA--DLPNLKTLDLRDCGITTIQ-GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKIL 274
           L          L  +      ++           +D        ++  Q          L
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITL 365

Query: 275 DLRDCGMTTIQGKIFK 290
           + +   +        +
Sbjct: 366 EQKKKALDEQVSNGRR 381

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 24/189 (12%), Positives = 48/189 (25%), Gaps = 11/189 (5%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
               + L+  +L  N F         D F   ++++ +                  T  T
Sbjct: 233 LRFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPT 287

Query: 152 TLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
                +   E   +     L  L+  +   LS   + T          N    +E+D   
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER--LECERENQARQREIDALK 345

Query: 210 CGITT--SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD 267
               T   Q         TL+ +   +       +  + E        +          +
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 268 LPNLKILDL 276
              L++L  
Sbjct: 406 QSPLQLLRA 414

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (254), Expect = 2e-24
 Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 19/206 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L  L+   N  R        ++FG+  +L  L L  N   +    +      +  L    
Sbjct: 575 LGLLDCVHNKVRHL------EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWN--ENITSGSLTRLGLANLTNLKELDLRGCGITT- 214
           N ++    +    ++  +  +D S+N   +        +      N   + L    I   
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 215 -SQGLADLPNLKTLDLRDCGITTI---------QGLAKLKNLEALDLSWNNINGSLESQG 264
            ++  A    + T+ L +  +T+I                 L  +DL +N +    +   
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748

Query: 265 LADLPNLKILDLRDCGMTTIQGKIFK 290
              LP L  +D+     ++   +   
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLN 774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (253), Expect = 3e-24
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 27/223 (12%)

Query: 92  FHPFEELQSLNLSDNWFRGF---------------YENKAYDSFGSLKQLKILDLGCNFF 136
                +LQ +  +++ F                         S+ +LK L  ++L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 137 NDSILPYLNTLTSLTTLILYSNSIEGSGTMQG--------LANLRYLQVLDLSWNENITS 188
              +  +L  L  L +L +  N    +  ++               +Q+  + +N N+  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE 562

Query: 189 GSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTI--QGLAKLKNL 246
                  L  +  L  LD     +   +       L  L L    I  I     A    +
Sbjct: 563 -FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           E L  S N +           +  +  +D     + +    I 
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (251), Expect = 6e-24
 Identities = 41/249 (16%), Positives = 77/249 (30%), Gaps = 34/249 (13%)

Query: 67  QLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAY--DSFGSLK 124
           ++ L Y +RLN  D    ++       P ++   ++L D           +   +   L 
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 125 QLKILDLGCNFFNDSILPY-------------------LNTLTSLTTLILYSNSIEGSGT 165
           +L+I+    + F    +                      + L  LT + LY+        
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 166 MQGLANLRYLQVLDLSWNENITS-----GSLTRL--GLANLTNLKELDLRGCGITT---S 215
              L +L  LQ L+++ N    S        TRL         ++   +    +     S
Sbjct: 509 -DFLYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 216 QGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275
             L  +  L  LD     +  ++       L  L L +N I   +     A    ++ L 
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625

Query: 276 LRDCGMTTI 284
                +  I
Sbjct: 626 FSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.8 bits (233), Expect = 1e-21
 Identities = 38/221 (17%), Positives = 71/221 (32%), Gaps = 26/221 (11%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFF-----NDSILPYL 144
                 ++++ L  S N  +         +  S+  +  +D   N       N S     
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIF---NAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS-----GSLTRLGLANL 199
               + +T+ L  N I+   T +  A    +  + LS N  +TS              N 
Sbjct: 670 YKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNT 727

Query: 200 TNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLEALDL---- 251
             L  +DLR   +T+         LP L  +D+     ++          L+A  +    
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787

Query: 252 --SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
               N I     + G+   P+L  L +    +  +  K+  
Sbjct: 788 DAEGNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDEKLTP 827

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 1e-18
 Identities = 40/216 (18%), Positives = 67/216 (31%), Gaps = 22/216 (10%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENK-AYDSFGSLKQLKILDLGCNFFNDSILPY 143
            + N+        + S++ S N       N               + L  N         
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 144 LNTLTSLTTLILYSNSIE------GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLA 197
             T + ++T+IL +N +                N   L  +DL +N  +TS S       
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD-FRAT 750

Query: 198 NLTNLKELDLRGCGITT-SQGLADLPNLKTLDLR------DCGITTI--QGLAKLKNLEA 248
            L  L  +D+     ++      +   LK   +R         I      G+    +L  
Sbjct: 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
           L +  N+I    E       P L ILD+ D    +I
Sbjct: 811 LQIGSNDIRKVDEK----LTPQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 7e-18
 Identities = 47/332 (14%), Positives = 94/332 (28%), Gaps = 69/332 (20%)

Query: 10  TERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCD--DWEGVKCNATTRRVMQ 67
            +  AL  I           Y   I  +    +     +     D  GV  +   R V  
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR-VTG 327

Query: 68  LSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYE-------------- 113
           LSL          R   ++  ++      EL+ L+   +                     
Sbjct: 328 LSLAGF---GAKGRVPDAIGQLT------ELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 114 -------NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTM 166
                  +         ++L + DL  +  N    P +  +   + + L    I      
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 167 -----QGLANLRYLQVLDLSWN----------------ENITSGSLTRLGLANLTNLKEL 205
                + +  L  LQ++  + +                +         L  +NL +L ++
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 206 DLRGCGITTS--QGLADLPNLKTLDLRDCGITTI-----------QGLAKLKNLEALDLS 252
           +L  C   T     L DLP L++L++      +                    ++   + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 253 WNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
           +NN+     S  L  +  L +LD     +  +
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 18/180 (10%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAY---DSFGSLKQLKILDLGCNFFNDSILP---Y 143
            LF     + ++ LS+N      EN       ++ +   L  +DL  N      L     
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFR 748

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL---GLANLT 200
             TL  L+ + +  N    S       N   L+   +    +     + R    G+    
Sbjct: 749 ATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 201 NLKELDLRGCGITT-SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA--LDLSWNNIN 257
           +L +L +    I    + L   P L  LD+ D    +I   +    +EA    L ++   
Sbjct: 807 SLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 22/128 (17%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDL------GCNFFNDSILPYLNTLTSLT 151
           L ++++S N F  F          +  QLK   +        N         + T  SL 
Sbjct: 755 LSNMDVSYNCFSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 152 TLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
            L + SN I                L +LD++ N    S  +T   +          L  
Sbjct: 810 QLQIGSNDIRKVDEKLTPQ------LYILDIADN-PNISIDVT--SVCPYIEAGMYVLLY 860

Query: 210 CGITTSQG 217
                 +G
Sbjct: 861 DKTQDIRG 868

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (253), Expect = 2e-24
 Identities = 48/225 (21%), Positives = 73/225 (32%), Gaps = 23/225 (10%)

Query: 74  ERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGC 133
             ++ +   S ++  +  F      Q L L +  F  F           LK LK L    
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTS 334

Query: 134 NFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQG-LANLRYLQVLDLSWNENITSGSLT 192
           N   +        L SL  L L  N +   G           L+ LDLS+N       + 
Sbjct: 335 NKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN------GVI 386

Query: 193 RL--GLANLTNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTI--QGLAKLKN 245
            +      L  L+ LD +   +           L NL  LD+               L +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 246 LEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           LE L ++ N+   +       +L NL  LDL  C +  +    F 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 7e-24
 Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 66  MQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQ 125
            Q      + L     TS    N         L+ L+LS N            S      
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTTS 374

Query: 126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNEN 185
           LK LDL  N    ++      L  L  L    ++++         +LR L  LD+S   +
Sbjct: 375 LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-H 432

Query: 186 ITSGSLTRLGLANLTNLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGITTIQG--L 240
                        L++L+ L + G     +       +L NL  LDL  C +  +     
Sbjct: 433 TR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
             L +L+ L+++ N +  S+       L +L+ + L  
Sbjct: 491 NSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 9e-23
 Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 26/218 (11%)

Query: 86  LLNMSL----FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141
           L+N           + L+ L  + N     +      S   L  L+ LDL  N  +    
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRNGLSFKGC 364

Query: 142 P--YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN--ENITSGSLTRLGLA 197
                   TSL  L L  N +           L  L+ LD   +  + ++  S+      
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FL 418

Query: 198 NLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTI---QGLAKLKNLEALDLS 252
           +L NL  LD+         +     L +L+ L +               +L+NL  LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 253 WNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
              +   L       L +L++L++    + ++   IF 
Sbjct: 479 QCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 9e-22
 Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 14/197 (7%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           L    F  F ELQ L+LS    +   +     ++ SL  L  L L  N      L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
           L+SL  L+    ++        + +L+ L+ L+++ N  I S  L     +NLTNL+ LD
Sbjct: 99  LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLD 155

Query: 207 LRGCGITT--SQGLADLPNLK----TLDLRDCGITTIQGLA-KLKNLEALDLSWNNINGS 259
           L    I +     L  L  +     +LDL    +  IQ  A K   L  L L  N  + +
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 260 LESQGLADLPNLKILDL 276
           +    +  L  L++  L
Sbjct: 216 VMKTCIQGLAGLEVHRL 232

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 6e-19
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 17/179 (9%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT---LT 148
                 L+ L+LS N       N     F  L+QL+ LD   +      +   +    L 
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNL--KQMSEFSVFLSLR 421

Query: 149 SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
           +L  L +       +        L  L+VL ++ N +     L  +    L NL  LDL 
Sbjct: 422 NLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGN-SFQENFLPDI-FTELRNLTFLDLS 478

Query: 209 GCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQ 263
            C +          L +L+ L++    + ++      +L +L+ + L  N  + S    
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 18/176 (10%)

Query: 126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWN 183
            K LDL  N           +   L  L L    I+    G  Q L++L     L L+ N
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST---LILTGN 86

Query: 184 ENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQ--- 238
             I   SL     + L++L++L      + +  +  +  L  LK L++    I + +   
Sbjct: 87  -PIQ--SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 239 GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI----LDLRDCGMTTIQGKIFK 290
             + L NLE LDLS N I  S+    L  L  + +    LDL    M  IQ   FK
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 4e-18
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
            S   L L  N +          +   LQVLDLS    I +  +      +L++L  L L
Sbjct: 28  FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRC-EIQT--IEDGAYQSLSHLSTLIL 83

Query: 208 RGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQ 263
            G  I +      + L +L+ L   +  + +++   +  LK L+ L+++ N I      +
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 264 GLADLPNLKILDLRDCGMTTIQGKIFK 290
             ++L NL+ LDL    + +I     +
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLR 170

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 5e-16
 Identities = 44/199 (22%), Positives = 65/199 (32%), Gaps = 20/199 (10%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
           +     L +L L+ N  +      A  +F  L  L+ L              +  L +L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK----ELDL 207
            L +  N I+     +  +NL  L+ LDLS N  I   S+    L  L  +      LDL
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQ--SIYCTDLRVLHQMPLLNLSLDL 184

Query: 208 RGCGITT-SQGLADLPNLKTLDLRDCGIT---TIQGLAKLKNLEALDLSWNNING----- 258
               +     G      L  L LR+   +       +  L  LE   L            
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 259 SLESQGLADLPNLKILDLR 277
             +   L  L NL I + R
Sbjct: 245 KFDKSALEGLCNLTIEEFR 263

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 19/208 (9%)

Query: 87  LNMSLFHPFEELQ----SLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP 142
           +  +      ++     SL+LS N            +F  ++ L  L L  NF + +++ 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG----AFKEIR-LHKLTLRNNFDSLNVMK 218

Query: 143 -YLNTLTSLTTLILYSNSIEGSGTMQGL-----ANLRYLQVLDLSWNENITSGSLTRLGL 196
             +  L  L    L        G ++         L  L + +                 
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 197 ANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
             LTN+    L    I   +  +     + L+L +C       L KLK+L+ L  + N  
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRLTFTSNKG 337

Query: 257 NGSLESQGLADLPNLKILDLRDCGMTTI 284
             +        LP+L+ LDL   G++  
Sbjct: 338 GNAFSEVD---LPSLEFLDLSRNGLSFK 362

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 46/242 (19%), Positives = 73/242 (30%), Gaps = 45/242 (18%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-YLN 145
           L +  F     LQ L   +               G LK LK L++  N      LP Y +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 146 TLTSLTTLILYSNSIEG--SGTMQGLANLRYLQV-LDLSWN------------------- 183
            LT+L  L L SN I+      ++ L  +  L + LDLS N                   
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 184 --ENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLP-----NLKTLDLRDCGITT 236
              N  S ++ +  +  L  L+   L          L          L  L + +  +  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 237 IQGLA--------KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288
           +             L N+ +  L    I    +    +     + L+L +C         
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLK 323

Query: 289 FK 290
            K
Sbjct: 324 LK 325

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (252), Expect = 5e-24
 Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 20/209 (9%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY 156
           +L  L    N   G        +FGS  +L  L+L  N   +    +      +  L   
Sbjct: 331 KLGMLECLYNQLEGKLP-----AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 157 SNSIEGSGTMQGLANLRYLQVLDLSWNE--NITSGSLTRL--GLANLTNLKELDLRGCGI 212
            N ++    +    ++  +  +D S+NE  ++   +   L        N+  ++L    I
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 213 TT--SQGLADLPNLKTLDLRDCGITTI---------QGLAKLKNLEALDLSWNNINGSLE 261
           +    +  +    L +++L    +T I         +       L ++DL +N +    +
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505

Query: 262 SQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                 LP L  +DL     +    +   
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLN 534

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 7e-22
 Identities = 29/241 (12%), Positives = 74/241 (30%), Gaps = 33/241 (13%)

Query: 68  LSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLK 127
                +E    Y        N+       +L  + + +         K      +L +++
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLK------DLTDVEVYNCPNLT----KLPTFLKALPEMQ 276

Query: 128 ILDLGCNFF--------NDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLD 179
           ++++ CN          +   L        +  + +  N+++       L  ++ L +L+
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 180 LSWNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTI 237
             +N  +           +   L  L+L    IT   +        ++ L      +  I
Sbjct: 337 CLYN-QLEG---KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 238 ---QGLAKLKNLEALDLSWNNINGSLESQ------GLADLPNLKILDLRDCGMTTIQGKI 288
                   +  + A+D S+N I                   N+  ++L +  ++    ++
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 289 F 289
           F
Sbjct: 453 F 453

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 1e-21
 Identities = 35/223 (15%), Positives = 68/223 (30%), Gaps = 28/223 (12%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFN-------DSILP 142
           +     E++++L+ + N  +            S+  +  +D   N          D + P
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIF---DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS-----GSLTRLGLA 197
                 +++++ L +N I      +  +    L  ++L  N  +T               
Sbjct: 428 TPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFK 485

Query: 198 NLTNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLEAL---- 249
           N   L  +DLR   +T          LP L  +DL     +           L+      
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545

Query: 250 --DLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
             D   N         G+   P+L  L +    +  +  KI  
Sbjct: 546 QRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIRKVNEKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 98  LQSLNLSDNWFRGFYENKAY---DSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
           + +++ S N               +      +  ++L  N  +       +T + L+++ 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 155 LYSNSIEG------SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
           L  N +            +   N   L  +DL +N  +T  S        L  L  +DL 
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD-FRATTLPYLVGIDLS 521

Query: 209 GCGITT-SQGLADLPNLKTLDLRDCGI-------TTI-QGLAKLKNLEALDLSWNNINGS 259
               +       +   LK   +R+              +G+    +L  L +  N+I   
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581

Query: 260 LESQGLADLPNLKILDLRDCGMTTI 284
            E       PN+ +LD++D    +I
Sbjct: 582 NEK----ITPNISVLDIKDNPNISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.2 bits (214), Expect = 4e-19
 Identities = 34/245 (13%), Positives = 74/245 (30%), Gaps = 19/245 (7%)

Query: 42  DDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSL 101
           +     D      GV  N+  R V  LSL          R   ++  ++      EL+ L
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGR-VTGLSLEGF---GASGRVPDAIGQLT------ELEVL 110

Query: 102 NLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL--NTLTSLTTLILYSNS 159
            L  +  +            +    +        +  + + Y      + L    + S+ 
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 160 IEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLA 219
            + S   +          +    N NIT  S     +  LT L++  +          + 
Sbjct: 171 QQKSIK-KSSRITLKDTQIGQLSN-NITFVSKA---VMRLTKLRQFYMGNSPFVAE-NIC 224

Query: 220 DLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279
           +    +  +      T       LK+L  +++        L +  L  LP ++++++   
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACN 283

Query: 280 GMTTI 284
              + 
Sbjct: 284 RGISG 288

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 8e-17
 Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 16/178 (8%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAY---DSFGSLKQLKILDLGCNFFNDSILP--YL 144
            LF     L S+NL  N      +N      ++F +   L  +DL  N     +      
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL---GLANLTN 201
            TL  L  + L  NS   S       N   L+   +    +       R    G+    +
Sbjct: 510 TTLPYLVGIDLSYNSF--SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 202 LKELDLRGCGITT-SQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNI 256
           L +L +    I   ++ +   PN+  LD++D    +I    +          L ++  
Sbjct: 568 LTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 29/126 (23%), Positives = 40/126 (31%), Gaps = 24/126 (19%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLG------CNFFNDSILPYLNTLTSLT 151
           L  ++LS N F  F          +   LK   +        N         +    SLT
Sbjct: 515 LVGIDLSYNSFSKFPT-----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 152 TLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITS-----GSLTRLGLANLTNLKE 204
            L + SN I                + VLD+  N NI+            G+  L   K 
Sbjct: 570 QLQIGSNDIRKVNEKITPN------ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 205 LDLRGC 210
            D+RGC
Sbjct: 624 QDIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 4/109 (3%)

Query: 183 NENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTI--QGL 240
            +N +         AN    KELD+ G     S  L     +  L L   G +      +
Sbjct: 44  GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVS--LNSNGRVTGLSLEGFGASGRVPDAI 101

Query: 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
            +L  LE L L  +    +    G   +      + +       Q    
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 15/120 (12%)

Query: 181 SWNENIT---SGSLTRLGLANLTNLKELDLRGCGITTS--QGLADLPNLKTLDLRDCGIT 235
           +WN N      G+   + L +   +  L L G G +      +  L  L+ L L   G  
Sbjct: 59  NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118

Query: 236 TIQ------GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
             +      G++   + E       +   +     +   P     DL    + +   +  
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTF----VDYDPREDFSDLIKDCINSDPQQKS 174

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 23/206 (11%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           L   +FH   +L +L++S+N      ++    +F +   L+ L L  N      +  L+ 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRLTH--VD-LSL 184

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
           + SL    +  N +        LA    ++ LD S N      S+  +       L  L 
Sbjct: 185 IPSLFHANVSYNLL------STLAIPIAVEELDASHN------SINVVRGPVNVELTILK 232

Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
           L+   +T +  L + P L  +DL    +  I      K++ LE L +S N +     +  
Sbjct: 233 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLY 290

Query: 265 LADLPNLKILDLRDCGMTTIQGKIFK 290
              +P LK+LDL    +  ++    +
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQ 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.3 bits (240), Expect = 7e-23
 Identities = 49/229 (21%), Positives = 79/229 (34%), Gaps = 44/229 (19%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP--YL 144
           L  +L   F +++ LNL+D             +F     ++ L +G N      LP    
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAI--RYLPPHVF 113

Query: 145 NTLTSLTTLILYSNSIEG--SGTMQGLANLRY---------------------LQVLDLS 181
             +  LT L+L  N +     G       L                       LQ L LS
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLA 241
            N       LT + L+ + +L   ++    ++T   LA    ++ LD     I  ++G  
Sbjct: 174 SNR------LTHVDLSLIPSLFHANVSYNLLST---LAIPIAVEELDASHNSINVVRGPV 224

Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
               L  L L  NN+    ++  L + P L  +DL    +  I    F 
Sbjct: 225 -NVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 22/222 (9%)

Query: 76  LNYYDRTSASLLNMSLFHPFEE-----LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD 130
              +      +    ++  FE+      + +   ++  R            S +Q+++L+
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLN 75

Query: 131 LGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGS 190
           L      +          ++  L +  N+I          N+  L VL L  N +++  S
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN-DLS--S 131

Query: 191 LTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA 248
           L R    N   L  L +    +            +L+ L L    +T +  L+ + +L  
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFH 190

Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
            ++S+N +        LA    ++ LD     +  ++G +  
Sbjct: 191 ANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNV 226

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.7 bits (210), Expect = 7e-19
 Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 9/177 (5%)

Query: 118 DSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV 177
            +         + +     +        TL +   +   ++++        L + R +++
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL-LDSFRQVEL 73

Query: 178 LDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGIT 235
           L+L+    I    +     A    +++L +    I         ++P L  L L    ++
Sbjct: 74  LNLNDL-QIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 236 TIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           ++          L  L +S NN+   +E        +L+ L L    +T +   +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 16/190 (8%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
            +S       ++ L+ S N                  +L IL L  N   D    +L   
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHNNLTD--TAWLLNY 247

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
             L  + L  N +E          ++ L+ L +S N  + + +L       +  LK LDL
Sbjct: 248 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN-RLVALNLY---GQPIPTLKVLDL 302

Query: 208 RGCGITT-SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
               +    +       L+ L L    I T++ L+    L+ L LS N+ + +       
Sbjct: 303 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFR 361

Query: 267 DLPNLKILDL 276
           ++    + D 
Sbjct: 362 NVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 8e-16
 Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 9/156 (5%)

Query: 139 SILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198
            I   L        + +   + +     + +  L   +++    +  +    L    L +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNS-TMRK--LPAALLDS 67

Query: 199 LTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWN 254
              ++ L+L    I    +   A    ++ L +    I  +       +  L  L L  N
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +++ SL      + P L  L + +  +  I+   F+
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.1 bits (247), Expect = 2e-23
 Identities = 50/215 (23%), Positives = 77/215 (35%), Gaps = 23/215 (10%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLT 148
            +       + L LS N+ R         SF  L+QL++L+LG  +   +I       L 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTA----SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 149 SLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
           +L  L L S+ I        QGL +   L  L L +   ++   L      NL  L  LD
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFH---LFELRLYFC-GLSDAVLKDGYFRNLKALTRLD 129

Query: 207 LRGCGITT---SQGLADLPNLKTLDLRDCGITTIQGLA----KLKNLEALDLSWNNIN-- 257
           L    I +         L +LK++D     I  +        + K L    L+ N++   
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 258 ---GSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
                 +         L+ILD+   G T      F
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.3 bits (245), Expect = 3e-23
 Identities = 49/226 (21%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           LN  +F   ++L+ LNL+ N      +    ++F  L  L++L+L  N   +        
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE-----NITSGSLTRLGLANLTN 201
           L  +  + L  N I      Q    L  LQ LDL  N       I S     L    L  
Sbjct: 337 LPKVAYIDLQKNHIAII-QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395

Query: 202 LKELDLRG----------CGITTSQGLADLPNLKTLDLRDCGITTIQG---LAKLKNLEA 248
           L +++L              +     L  +P+L+ L L     ++  G    ++  +LE 
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 249 LDLSWNNING----SLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           L L  N +       L       L +L++L L    + ++   +F 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.8 bits (241), Expect = 1e-22
 Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 33/230 (14%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND-SILPY 143
             L  S F+   ++  ++L  N      +     +F  L++L+ LDL  N       +P 
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQ----TFKFLEKLQTLDLRDNALTTIHFIPS 382

Query: 144 LNTLT--------------SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSG 189
           +  +               +   + L  N +E    +  L  + +LQ+L L+ N   +S 
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSC 441

Query: 190 SLTRLGLANLTNLKELDLRGCGITTSQG-------LADLPNLKTLDLRDCGITTIQG--L 240
           S  +   +   +L++L L    +  +            L +L+ L L    + ++     
Sbjct: 442 SGDQT-PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           + L  L  L L+ N +             NL+ILD+    +      +F 
Sbjct: 501 SHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQLLAPNPDVFV 547

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.3 bits (237), Expect = 4e-22
 Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 41/235 (17%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           + +    F+  + LQ LNLS N     Y +    +F  L ++  +DL  N          
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYL-----------------QVLDLSWN--EN 185
             L  L TL L  N++    T+  + ++  +                  ++ LS N  EN
Sbjct: 359 KFLEKLQTLDLRDNALT---TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415

Query: 186 ITSGSLTRLGLANLTNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTIQG--- 239
           +         L  + +L+ L L     ++    Q  ++ P+L+ L L +  +        
Sbjct: 416 LDILYF----LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 240 ----LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                  L +L+ L L+ N +N SL     + L  L+ L L    +T +      
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.7 bits (233), Expect = 1e-21
 Identities = 55/271 (20%), Positives = 88/271 (32%), Gaps = 56/271 (20%)

Query: 70  LTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKIL 129
           L   + L    + +   ++   F     L+ L+L  +     +     D+F  L  L  L
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP----DAFQGLFHLFEL 102

Query: 130 DLGCNFFNDSILP--YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN--EN 185
            L     +D++L   Y   L +LT L L  N I           L  L+ +D S N    
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 186 ITSGSLTRLGLANLT---------------------------NLKELDLRGCGIT----- 213
           +    L  L    L+                            L+ LD+ G G T     
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

Query: 214 ---------TSQGLADLPNLKTLDLRDCGITTI-----QGLAKLKNLEALDLSWNNINGS 259
                     +  L    ++         I         GLA+  ++  LDLS   +  S
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFVF-S 280

Query: 260 LESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           L S+    L +LK+L+L    +  I  + F 
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.6 bits (230), Expect = 4e-21
 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 17/194 (8%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           ++ L+LS  +            F +LK LK+L+L  N  N         L +L  L L  
Sbjct: 268 VRHLDLSHGFVFSLNSR----VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 158 NSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS 215
           N +    S    GL  + Y+   DL  N +I    +       L  L+ LDLR   +TT 
Sbjct: 324 NLLGELYSSNFYGLPKVAYI---DLQKN-HIAI--IQDQTFKFLEKLQTLDLRDNALTT- 376

Query: 216 QGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275
             +  +P++  + L    + T+  +    NL  + LS N +        L  +P+L+IL 
Sbjct: 377 --IHFIPSIPDIFLSGNKLVTLPKINLTANL--IHLSENRLENLDILYFLLRVPHLQILI 432

Query: 276 LRDCGMTTIQGKIF 289
           L     ++  G   
Sbjct: 433 LNQNRFSSCSGDQT 446

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.6 bits (212), Expect = 7e-19
 Identities = 38/150 (25%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
           L +   L+L  N I  + T      L  LQ+L+L         ++ +    NL NL+ LD
Sbjct: 23  LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILD 79

Query: 207 LRGCGITT--SQGLADLPNLKTLDLRDCGITTIQ----GLAKLKNLEALDLSWNNINGSL 260
           L    I          L +L  L L  CG++           LK L  LDLS N I    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 261 ESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                  L +LK +D     +  +     +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.7 bits (207), Expect = 3e-18
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 12/186 (6%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-NTLTSLTTLILY 156
              ++LS+N                +  L+IL L  N F+        +   SL  L L 
Sbjct: 403 ANLIHLSENRLEN---LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 157 SNSIEGSGTMQ----GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI 212
            N ++ +   +        L +LQVL L+ N  + S  L     ++LT L+ L L    +
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNS--LPPGVFSHLTALRGLSLNSNRL 516

Query: 213 TTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLK 272
           T         NL+ LD+    +          +L  LD++ N      E     +  N  
Sbjct: 517 TVLSHNDLPANLEILDISRNQLLAPN-PDVFVSLSVLDITHNKFICECELSTFINWLNHT 575

Query: 273 ILDLRD 278
            + +  
Sbjct: 576 NVTIAG 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 203 KELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSL 260
           +    R C +T  Q    L   + L L    I T+       L+ L+ L+L       ++
Sbjct: 7   RIAFYRFCNLT--QVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 261 ESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           + +   +LPNL+ILDL    +  +    F+
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 10/160 (6%)

Query: 66  MQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENK-AYDSFGSLK 124
             L + + + L       +S            L+ L L +N  +  +E +  +D F  L 
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 125 QLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE 184
            L++L L  N+ N       + LT+L  L L SN +     +        L++LD+S N 
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISRN- 536

Query: 185 NITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNL 224
                 L         +L  LD+          L+   N 
Sbjct: 537 -----QLLAPNPDVFVSLSVLDITHNKFICECELSTFINW 571

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.7 bits (236), Expect = 5e-23
 Identities = 58/224 (25%), Positives = 87/224 (38%), Gaps = 25/224 (11%)

Query: 71  TYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD 130
             ++R+ +      S +  + F     L  L L  N            +F  L  L+ LD
Sbjct: 32  AASQRI-FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLD 86

Query: 131 LGCNFFNDSILPY-LNTLTSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENIT 187
           L  N    S+ P   + L  L TL L    ++  G G  +GLA L+Y   L L  N  + 
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY---LYLQDN-ALQ 142

Query: 188 SGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKL 243
             +L      +L NL  L L G  I++   +    L +L  L L    +  +       L
Sbjct: 143 --ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLR------DCGM 281
             L  L L  NN++ +L ++ LA L  L+ L L       DC  
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.7 bits (236), Expect = 6e-23
 Identities = 44/206 (21%), Positives = 66/206 (32%), Gaps = 24/206 (11%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTT 152
               Q + L  N            SF + + L IL L  N    + +       L  L  
Sbjct: 31  PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQ 84

Query: 153 LILYSN----SIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
           L L  N    S++   T  GL  L  L    L     +    L       L  L+ L L+
Sbjct: 85  LDLSDNAQLRSVD-PATFHGLGRLHTL---HLDRC-GLQE--LGPGLFRGLAALQYLYLQ 137

Query: 209 GCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
              +         DL NL  L L    I+++       L +L+ L L  N +   +    
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196

Query: 265 LADLPNLKILDLRDCGMTTIQGKIFK 290
             DL  L  L L    ++ +  +   
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALA 222

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.7 bits (243), Expect = 5e-23
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 23/206 (11%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           L   +FH   +L +L++S+N      ++    +F +   L+ L L  N      +  L+ 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRLTH--VD-LSL 190

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
           + SL    +  N +        LA    ++ LD S N      S+  +       L  L 
Sbjct: 191 IPSLFHANVSYNLL------STLAIPIAVEELDASHN------SINVVRGPVNVELTILK 238

Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
           L+   +T +  L + P L  +DL    +  I      K++ LE L +S N +     +  
Sbjct: 239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLY 296

Query: 265 LADLPNLKILDLRDCGMTTIQGKIFK 290
              +P LK+LDL    +  ++    +
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.6 bits (235), Expect = 5e-22
 Identities = 49/229 (21%), Positives = 79/229 (34%), Gaps = 44/229 (19%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP--YL 144
           L  +L   F +++ LNL+D             +F     ++ L +G N      LP    
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAI--RYLPPHVF 119

Query: 145 NTLTSLTTLILYSNSIE--GSGTMQGLANLRY---------------------LQVLDLS 181
             +  LT L+L  N +     G       L                       LQ L LS
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLA 241
            N       LT + L+ + +L   ++    ++T   LA    ++ LD     I  ++G  
Sbjct: 180 SN------RLTHVDLSLIPSLFHANVSYNLLST---LAIPIAVEELDASHNSINVVRGPV 230

Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
               L  L L  NN+    ++  L + P L  +DL    +  I    F 
Sbjct: 231 -NVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 7e-22
 Identities = 35/226 (15%), Positives = 78/226 (34%), Gaps = 30/226 (13%)

Query: 76  LNYYDRTSASLLNMSLFHPFEE-----LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD 130
              +      +    ++  FE+      + +   ++  R            S +Q+++L+
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLN 81

Query: 131 LGCNFFNDSILPY--LNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENI 186
           L      +  +         ++  L +  N+I            N+  L VL L  N ++
Sbjct: 82  LNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHV---FQNVPLLTVLVLERN-DL 135

Query: 187 TSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQGLAKLK 244
           +  SL R    N   L  L +    +            +L+ L L    +T +  L+ + 
Sbjct: 136 S--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIP 192

Query: 245 NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +L   ++S+N +        LA    ++ LD     +  ++G +  
Sbjct: 193 SLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNV 232

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 6e-16
 Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 9/151 (5%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
           L        + +   + +     + +  L   +++    +  +    L    L +   ++
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNS-TMRK--LPAALLDSFRQVE 78

Query: 204 ELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGS 259
            L+L    I    +   A    ++ L +    I  +       +  L  L L  N+++ S
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 137

Query: 260 LESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           L      + P L  L + +  +  I+   F+
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 16/191 (8%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
             P   L+ L+LS N       N          +L+ L L  N      L  L+T  +L 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSI--VTLK-LSTHHTLK 348

Query: 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN------LKEL 205
            L L  N  + +       N+    V D   +  I       L             L+ +
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 206 DLRGCGITTSQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNINGSLESQ 263
            L        +         T++        I  QG   L+  E L+   N +   ++  
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQL 468

Query: 264 GLADLPNLKIL 274
               +   ++L
Sbjct: 469 TNEQIQQEQLL 479

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.4 bits (230), Expect = 8e-22
 Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 20/198 (10%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
           F   + L +L L +N     +E     +F  L++L+ L +  N      +P  N  +SL 
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHL--VEIP-PNLPSSLV 126

Query: 152 TLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209
            L ++ N I     G   GL N   +  +++  N  + +          L  L  L +  
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRN---MNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISE 181

Query: 210 CGITT-SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQGLA 266
             +T   + L     L  L L    I  I+   L +   L  L L  N I   +E+  L+
Sbjct: 182 AKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLS 238

Query: 267 DLPNLKILDLRDCGMTTI 284
            LP L+ L L +  ++ +
Sbjct: 239 FLPTLRELHLDNNKLSRV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 4e-21
 Identities = 40/216 (18%), Positives = 68/216 (31%), Gaps = 44/216 (20%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN----------FFNDSILPYL 144
              L  L + DN  R   +      F  L+ +  +++G N           F+   L YL
Sbjct: 122 PSSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 145 ------------NTLTSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGS 190
                       +   +L  L L  N I+      +   + L     L L  N  I    
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKL---YRLGLGHN-QIRM-- 231

Query: 191 LTRLGLANLTNLKELDLRGCGITT-SQGLADLPNLKTLDLRDCGITTIQ--------GLA 241
           +    L+ L  L+EL L    ++    GL DL  L+ + L    IT +            
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 242 KLKNLEALDLSWNNI-NGSLESQGLADLPNLKILDL 276
           K      + L  N +    ++      + +   +  
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.7 bits (179), Expect = 6e-15
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
              T L L +N I           L++L  L L  N  I+   +     + L  L++L +
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-KISK--IHEKAFSPLRKLQKLYI 109

Query: 208 RGCGITT-SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
               +      L    +L  L + D  I  +     + L+N+  +++  N +  S    G
Sbjct: 110 SKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 265 LADLPNLKILDLRDCGMTTIQGKIFK 290
             D   L  L + +  +T I   + +
Sbjct: 168 AFDGLKLNYLRISEAKLTGIPKDLPE 193

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 91.3 bits (227), Expect = 3e-21
 Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 45/229 (19%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSL-------KQLKILDLGCNFFND----SILPYLN 145
           +L+    SD  F G  +++  ++   L        +L  + L  N F       ++ +L+
Sbjct: 61  DLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 146 TLTSLTTLILYSNSIEGSG------------TMQGLANLRYLQVLDLSWNENITSGSLTR 193
             T L  L L++N +                  +   N   L+ +    N  + +GS+  
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKE 178

Query: 194 LG--LANLTNLKELDLRGCGITT-------SQGLADLPNLKTLDLRDCGITTI------Q 238
                 +   L  + +   GI          +GLA    LK LDL+D   T +       
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 239 GLAKLKNLEALDLSWNNI--NGSLE-SQGLADLPN--LKILDLRDCGMT 282
            L    NL  L L+   +   G+       + L N  L+ L L+   + 
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 43/226 (19%)

Query: 98  LQSLNLSDNWFRGFYENKA-YDSFGSLKQLKILDLGCNFFND----------SILPYLNT 146
           ++ + LS N   G    +   ++  S K L+I +    F              +L  L  
Sbjct: 34  VKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 147 LTSLTTLILYSNSIEGSGTM---QGLANLRYLQVLDLSWNENITSGSLTRLGLA------ 197
              L T+ L  N+   +        L+    L+ L L  N  +   +  ++  A      
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAV 151

Query: 198 -----NLTNLKELDLRGCGITT------SQGLADLPNLKTLDLRDCGITTI-------QG 239
                N   L+ +      +        ++       L T+ +   GI          +G
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 240 LAKLKNLEALDLSWNNI--NGSLE-SQGLADLPNLKILDLRDCGMT 282
           LA  + L+ LDL  N     GS   +  L   PNL+ L L DC ++
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.6 bits (194), Expect = 8e-17
 Identities = 47/222 (21%), Positives = 81/222 (36%), Gaps = 40/222 (18%)

Query: 98  LQSLNLSDNWF---------RGFYENKAYDSFGSLKQLKILDLGCNFFND----SILPYL 144
           L+ L L +N           R   E        +   L+ +  G N   +          
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 145 NTLTSLTTLILYSNSIEGSGTM----QGLANLRYLQVLDLSWNENITSGSLTRLG--LAN 198
            +   L T+ +  N I   G      +GLA  + L+VLDL  N   T    + L   L +
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKS 242

Query: 199 LTNLKELDLRGCGITT------SQGLADLPN--LKTLDLRDCGITT--IQGLA-----KL 243
             NL+EL L  C ++           + L N  L+TL L+   I    ++ L      K+
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 244 KNLEALDLSWNNIN---GSLE--SQGLADLPNLKILDLRDCG 280
            +L  L+L+ N  +     ++   +  +     ++ +L D  
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 25/195 (12%), Positives = 56/195 (28%), Gaps = 38/195 (19%)

Query: 126 LKILDLGCNFFND----SILPYLNTLTSLTTLILYSNSIEGSGTM---QGLANLRYLQVL 178
           ++   L  +        S+   L    S+  ++L  N+I         + +A+ + L++ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 179 DLSWNENITSGSLTRLG-------LANLTNLKELDLRGCGITT------SQGLADLPNLK 225
           + S                     L     L  + L                L+    L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 226 TLDLRDCGIT---------------TIQGLAKLKNLEALDLSWNNI-NGSLE--SQGLAD 267
            L L + G+                  +       L ++    N + NGS++  ++    
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 268 LPNLKILDLRDCGMT 282
              L  + +   G+ 
Sbjct: 186 HRLLHTVKMVQNGIR 200

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 5e-21
 Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 21/217 (9%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--L 144
           ++ S       LQ+L L+ N      E+    SF SL  L+ LDL  N+   S L     
Sbjct: 67  ISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYL--SNLSSSWF 120

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
             L+SLT L L  N  +  G     ++L  LQ+L +   +  T   + R   A LT L+E
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT--KIQRKDFAGLTFLEE 178

Query: 205 LDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNING-- 258
           L++    + +   + L  + N+  L L       +  +      ++E L+L   +++   
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 259 -----SLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                + E+  L      + + + D  +  +   + +
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 4e-17
 Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 20/206 (9%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY- 143
           S L+ S F P   L  LNL  N ++   E      F  L +L+IL +G       I    
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL---FSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
              LT L  L + ++ ++ S   + L +++ +  L L          L  + +   ++++
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMK-QHI--LLLEIFVDVTSSVE 225

Query: 204 ELDLRGCGITTSQ----------GLADLPNLKTLDLRDCGITTIQGLA-KLKNLEALDLS 252
            L+LR   + T             L      + + + D  +  +  L  ++  L  L+ S
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 253 WNNINGSLESQGLADLPNLKILDLRD 278
            N +  S+       L +L+ + L  
Sbjct: 286 RNQLK-SVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 13/150 (8%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE--NITSGSLTRLGLANLTNLKEL 205
            ++ +L L +N I        L     LQ L L+ N    I   S      ++L +L+ L
Sbjct: 52  EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSF-----SSLGSLEHL 105

Query: 206 DLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG---LAKLKNLEALDLSWNNINGSL 260
           DL    ++   S     L +L  L+L      T+      + L  L+ L +   +    +
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 261 ESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           + +  A L  L+ L++    + + + K  K
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 19/172 (11%)

Query: 70  LTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKIL 129
           LT  + L   +  + + +    F     L+ L +  +  + +       S  S++ +  L
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHL 203

Query: 130 DLGCNFFNDSILPYL-NTLTSLTTLILYSNSIEG-------SGTMQGLANLRYLQVLDLS 181
            L        +L    +  +S+  L L    ++        +G    L      + + ++
Sbjct: 204 ILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITT-SQG-LADLPNLKTLDLRD 231
                    L    L  ++ L EL+     + +   G    L +L+ + L  
Sbjct: 263 DESLFQVMKL----LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 1e-20
 Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 29/197 (14%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDL-GCN--------FFNDSILPYLNTLT 148
           L++L L+ N  R         S  SL +L+ L +  C           +         L 
Sbjct: 129 LETLTLARNPLRALPA-----SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 149 SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL--GLANLTNLKELD 206
           +L +L L    I        +ANL+ L+ L +  +       L+ L   + +L  L+ELD
Sbjct: 184 NLQSLRLEWTGIRSLP--ASIANLQNLKSLKIRNS------PLSALGPAIHHLPKLEELD 235

Query: 207 LRGCGITTS--QGLADLPNLKTLDLRDC-GITTI-QGLAKLKNLEALDLSWNNINGSLES 262
           LRGC    +          LK L L+DC  + T+   + +L  LE LDL        L  
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-P 294

Query: 263 QGLADLPNLKILDLRDC 279
             +A LP   I+ +   
Sbjct: 295 SLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 9e-20
 Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 32/202 (15%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSLTTLILY 156
           LQ + +         +     +      L+ L L  N      LP  + +L  L  L + 
Sbjct: 106 LQHMTIDAAGLMELPD-----TMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIR 158

Query: 157 SN--------SIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL--GLANLTNLKELD 206
           +          +  +        L  LQ L L W        +  L   +ANL NLK L 
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT------GIRSLPASIANLQNLKSLK 212

Query: 207 LRGCGITT-SQGLADLPNLKTLDLRDC-GITTI-QGLAKLKNLEALDLSWNNINGSLES- 262
           +R   ++     +  LP L+ LDLR C  +            L+ L L   +   +L + 
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS---NLLTL 269

Query: 263 -QGLADLPNLKILDLRDCGMTT 283
              +  L  L+ LDLR C   +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLS 291

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 22/179 (12%)

Query: 118 DSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV 177
           D     ++    D                  +         +++ +  +   A       
Sbjct: 30  DVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVA 85

Query: 178 LDLSWNENITSGSLTRL--GLANLTNLKELDLRGCGITT-SQGLADLPNLKTLDLRDCGI 234
           L+L          L +       L++L+ + +   G+      +     L+TL L    +
Sbjct: 86  LELRSV------PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 235 TTI-QGLAKLKNLEALDLSWNN--------INGSLESQGLADLPNLKILDLRDCGMTTI 284
             +   +A L  L  L +            +  +  S     L NL+ L L   G+ ++
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 32/212 (15%)

Query: 89  MSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLN-TL 147
                   + Q    +D          +     +    +I          +     + T 
Sbjct: 26  RPYHDVLSQWQRHYNADR-----NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQ 80

Query: 148 TSLTTLILYSNSIEGSGTM-QGLANLRYLQVLDLSWNENITSGSLTRL--GLANLTNLKE 204
                L L S  +            L +LQ + +          L  L   +     L+ 
Sbjct: 81  PGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAA------GLMELPDTMQQFAGLET 131

Query: 205 LDLRGCGITT-SQGLADLPNLKTLDLRDC-----------GITTIQGLAKLKNLEALDLS 252
           L L    +      +A L  L+ L +R C                     L NL++L L 
Sbjct: 132 LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 253 WNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
           W  I  SL    +A+L NLK L +R+  ++ +
Sbjct: 192 WTGIR-SL-PASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 22/184 (11%)

Query: 98  LQSLNLSDNWF-----RGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSLT 151
           L+ L++                 A      L  L+ L L         LP  +  L +L 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLK 209

Query: 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL--GLANLTNLKELDLRG 209
           +L + ++ +   G    + +L  L+ LDL         +L            LK L L+ 
Sbjct: 210 SLKIRNSPLSALGP--AIHHLPKLEELDLRGCT-----ALRNYPPIFGGRAPLKRLILKD 262

Query: 210 C-GITT-SQGLADLPNLKTLDLRDC-GITTI-QGLAKLKNLEALDLSWNNINGSLESQGL 265
           C  + T    +  L  L+ LDLR C  ++ +   +A+L     + +   ++   L+    
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHRP 321

Query: 266 ADLP 269
              P
Sbjct: 322 VARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 4/89 (4%)

Query: 198 NLTNLKELDLRGCGITTS--QGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
           + +  + L  +G          L+        D       +    A   N +    +   
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW--HSAWRQANSNNPQIETRTGRA 67

Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTI 284
           +  + +    A  P    L+LR   +   
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLPQF 96

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 84.7 bits (210), Expect = 6e-20
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 153 LILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCG 211
           L      IE       L+ L+  + L LS N       + ++  L+ + NL+ L L    
Sbjct: 30  LHGMIPPIEKMD--ATLSTLKACKHLALSTNN------IEKISSLSGMENLRILSLGRNL 81

Query: 212 ITTSQGLADLPN-LKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
           I   + L  + + L+ L +    I ++ G+ KL NL  L +S N I    E   LA L  
Sbjct: 82  IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 271 LKILDL 276
           L+ L L
Sbjct: 142 LEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 82.0 bits (203), Expect = 5e-19
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 22/168 (13%)

Query: 122 SLKQLKILDLGCNFFN-DSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDL 180
              + + ++L       + +   L+TL +   L L +N+IE    +  L+ +  L++L L
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSL 77

Query: 181 SWNENITSGSLTRLGLANLTN-LKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT--- 236
             N  I         L  + + L+EL +    I +  G+  L NL+ L + +  IT    
Sbjct: 78  GRN-LIKKIE----NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 237 IQGLAKLKNLEALDLSWNNINGSLESQG---------LADLPNLKILD 275
           I  LA L  LE L L+ N +    +            +  LPNLK LD
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 195 GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKL-KNLEALDLSW 253
            L+ L   K L L    I     L+ + NL+ L L    I  I+ L  +   LE L +S+
Sbjct: 43  TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102

Query: 254 NNINGSLESQGLADLPNLKILDLRD 278
           N I  SL   G+  L NL++L + +
Sbjct: 103 NQIA-SLS--GIEKLVNLRVLYMSN 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 26/147 (17%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
            +  + L LS N            S   ++ L+IL LG N     I        +L  L 
Sbjct: 47  LKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW 99

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS-GSLTRLGLANLTNLKELDLRGCGIT 213
           +  N I    ++ G+  L  L+VL +S N  IT+ G + +  LA L  L++L L G  + 
Sbjct: 100 ISYNQIA---SLSGIEKLVNLRVLYMSNN-KITNWGEIDK--LAALDKLEDLLLAGNPLY 153

Query: 214 TSQG------------LADLPNLKTLD 228
                           +  LPNLK LD
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLEALDLSWN 254
           +A  T +K+  +R      S    +   ++ L      I  +   L+ LK  + L LS N
Sbjct: 1   MAKATTIKDA-IRIFEERKSVVATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTN 58

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQG 286
           NI   +    L+ + NL+IL L    +  I+ 
Sbjct: 59  NI-EKIS--SLSGMENLRILSLGRNLIKKIEN 87

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 87.2 bits (216), Expect = 6e-20
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 13/169 (7%)

Query: 122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA-NLRYLQVLDL 180
              +L+ L L     +D I+  L   ++L  L L   S      +Q L  +   L  L+L
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 181 SWNENITSGSLTRLGLANLTNLKELDLRGC-GITTSQGLADL----PNLKTLDLRDC-GI 234
           SW  + T   +          + +L+L G         L+ L    PNL  LDL D   +
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 235 T--TIQGLAKLKNLEALDLSW-NNI-NGSLESQGLADLPNLKILDLRDC 279
                Q   +L  L+ L LS   +I   +L    L ++P LK L +   
Sbjct: 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFGI 282

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 70.7 bits (173), Expect = 3e-14
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 17/187 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDL-GCNFFNDSILPYL-NTLTSLTTLIL 155
           LQ+L+L          +   ++      L  L+L GC+ F++  L  L ++ + L  L L
Sbjct: 120 LQNLSLEGLRL----SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 156 -YSNSIEGSGTMQGLA-NLRYLQVLDLS-WNENITSGSLTRLGLANLTNLKELDLRGCGI 212
            +            +A     +  L+LS + +N+    L+ L      NL  LDL    +
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHLDLSDSVM 234

Query: 213 TTSQG---LADLPNLKTLDLRDC-GIT--TIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
             +        L  L+ L L  C  I   T+  L ++  L+ L +     +G+L+    A
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 294

Query: 267 DLPNLKI 273
            LP+L+I
Sbjct: 295 -LPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSW 182
           L Q  I       F D  L    +   +  + L ++ IE S     L+    LQ L L  
Sbjct: 68  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127

Query: 183 NENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL----PNLKTLDLRDCGITTIQ 238
              ++   +  L  A  +NL  L+L GC   +   L  L      L  L+L  C   T +
Sbjct: 128 L-RLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184

Query: 239 GLAKL-----KNLEALDLSWNNINGSLESQGLADL----PNLKILDLRDCGMTT 283
            +        + +  L+LS      +L+   L+ L    PNL  LDL D  M  
Sbjct: 185 HVQVAVAHVSETITQLNLS--GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 12/135 (8%)

Query: 154 ILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213
            L+         +      R L    +++    +          +   ++ +DL    I 
Sbjct: 47  SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106

Query: 214 TSQG---LADLPNLKTLDLRDCGIT--TIQGLAKLKNLEALDLSWNNINGSLESQGLADL 268
            S     L+    L+ L L    ++   +  LAK  NL  L+LS  +         L  L
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTL 163

Query: 269 ----PNLKILDLRDC 279
                 L  L+L  C
Sbjct: 164 LSSCSRLDELNLSWC 178

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 87.1 bits (215), Expect = 2e-19
 Identities = 44/267 (16%), Positives = 83/267 (31%), Gaps = 14/267 (5%)

Query: 20  SFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATT-RRVMQLSLTYTERLNY 78
              +        ++    W+ +      +        +   T      +  L       +
Sbjct: 282 PLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW 341

Query: 79  YDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKIL-DLGCNFFN 137
              ++            E+   L       +   E +  + +  L  + ++  L    + 
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 401

Query: 138 DSILPYLNTLTSLTTLILYSNSIEGSGTMQG----LANLRYLQVLDLSWNENITSGSLTR 193
              L Y +TL ++  +         S  +            ++VL L+         LT 
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK------DLTV 455

Query: 194 L-GLANLTNLKELDLRGCGITT-SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL 251
           L  L  L  +  LDL    +      LA L  L+ L   D  +  + G+A L  L+ L L
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLL 515

Query: 252 SWNNINGSLESQGLADLPNLKILDLRD 278
             N +  S   Q L   P L +L+L+ 
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.7 bits (201), Expect = 1e-17
 Identities = 44/220 (20%), Positives = 75/220 (34%), Gaps = 21/220 (9%)

Query: 68  LSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLK 127
           LS+  +  L     +   L  +   + +  L  + L        YE +    F +LK + 
Sbjct: 356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415

Query: 128 ILDLGCNFFNDSIL-----PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSW 182
            +         S               +  L L    +     +  L  L  +  LDLS 
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSH 472

Query: 183 NENITSGSLTRL--GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT---I 237
           N       L  L   LA L  L+ L      +    G+A+LP L+ L L +  +     I
Sbjct: 473 N------RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI 526

Query: 238 QGLAKLKNLEALDLSWNNI--NGSLESQGLADLPNLKILD 275
           Q L     L  L+L  N++     ++ +    LP++  + 
Sbjct: 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 13/202 (6%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           L    F                +   E    DS  + +QL   +L             + 
Sbjct: 313 LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS-ATDEQLFRCELSVE----KSTVLQSE 367

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKEL 205
           L S   L      +E       L  +  ++ LD    E  T    + L  +  +      
Sbjct: 368 LESCKELQ----ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423

Query: 206 DLRGCGITTSQG-LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQG 264
           DLR   +  +     +  +++ L L    +T +  L +L  +  LDLS N +  +L    
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALP-PA 481

Query: 265 LADLPNLKILDLRDCGMTTIQG 286
           LA L  L++L   D  +  + G
Sbjct: 482 LAALRCLEVLQASDNALENVDG 503

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 7e-09
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 22/175 (12%)

Query: 33  KILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLF 92
            + P      D + S    +   +K      RV+ L+                L  +   
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-------------HKDLTVLCHL 459

Query: 93  HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTT 152
                +  L+LS N  R            +L+ L++L    N   +  +  +  L  L  
Sbjct: 460 EQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQE 512

Query: 153 LILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN-LTNLKELD 206
           L+L +N ++ S  +Q L +   L +L+L  N  +      +  LA  L ++  + 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.4 bits (209), Expect = 1e-18
 Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 25/200 (12%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
           S+ +M+       L  L  + N                   L  L    N   +  L  +
Sbjct: 53  SITDMTGIEKLTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTN--LD-V 102

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
             LT LT L   +N +    T   ++    L  L+ + N      +LT + +++ T L E
Sbjct: 103 TPLTKLTYLNCDTNKL----TKLDVSQNPLLTYLNCARN------TLTEIDVSHNTQLTE 152

Query: 205 LDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQG 264
           LD       T   +     L TLD     IT +  +++ K L  L+   NNI   L+   
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNIT-KLD--- 207

Query: 265 LADLPNLKILDLRDCGMTTI 284
           L     L  LD     +T I
Sbjct: 208 LNQNIQLTFLDCSSNKLTEI 227

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 46/233 (19%), Positives = 75/233 (32%), Gaps = 34/233 (14%)

Query: 67  QLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQL 126
           ++ +++  +L   D      +      P  +L +L+ S N                 K L
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-------DVSQNKLL 193

Query: 127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE-- 184
             L+   N  N + L  LN    LT L   SN +    T   +  L  L   D S N   
Sbjct: 194 NRLNCDTN--NITKLD-LNQNIQLTFLDCSSNKL----TEIDVTPLTQLTYFDCSVNPLT 246

Query: 185 -------------NITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRD 231
                        +     L  + L + T L      GC       +     L  LD + 
Sbjct: 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306

Query: 232 CGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
            GIT +  L++   L  L L+   +   L+   ++    LK L   +  +   
Sbjct: 307 AGITELD-LSQNPKLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHIQDF 354

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 30/176 (17%)

Query: 127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENI 186
             +           +     L +LT+L  +++SI     M G+  L  L  L  + N   
Sbjct: 22  SEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN-- 75

Query: 187 TSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNL 246
               +T L L+  TNL  L      +T    +  L  L  L+     +T +  +++   L
Sbjct: 76  ----ITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLL 129

Query: 247 EALDLSWNNI------------------NGSLESQGLADLPNLKILDLRDCGMTTI 284
             L+ + N +                  N  +    +     L  LD     +T +
Sbjct: 130 TYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 33/186 (17%), Positives = 51/186 (27%), Gaps = 26/186 (13%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
             +L +L+                      QL                 +   T L  L 
Sbjct: 253 LSKLTTLHCIQTDLLEI-------DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
             +  I    T   L+    L  L L+  E      LT L +++ T LK L      I  
Sbjct: 304 CQAAGI----TELDLSQNPKLVYLYLNNTE------LTELDVSHNTKLKSLSCVNAHIQD 353

Query: 215 SQGLADLPNLKTLDLRDCGITTI-------QGLAKLKNLEALDLSWNNINGSLESQGLAD 267
              +  +P L      +    T+         L    + + LD   N +N      G+ D
Sbjct: 354 FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYD 413

Query: 268 LPNLKI 273
                I
Sbjct: 414 QATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 201 NLKELDLRGCGI--TTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNING 258
           N          +  T +     L  L +LD  +  IT + G+ KL  L  L  + NNI  
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT- 77

Query: 259 SLESQGLADLPNLKILDLRDCGMTTI 284
           +L+   L+   NL  L      +T +
Sbjct: 78  TLD---LSQNTNLTYLACDSNKLTNL 100

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 6e-18
 Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 12/188 (6%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L  LNL +  +       A         LK+L +      +     +    +L+TL L  
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 158 NSIEGSGTMQG---LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
           N   G   +           LQVL L      T   +     A    L+ LDL    +  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 215 ---SQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
              +        L +L+L   G+  + +GL     L  LDLS+N ++ +        LP 
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDE---LPQ 297

Query: 271 LKILDLRD 278
           +  L L+ 
Sbjct: 298 VGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 44/224 (19%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYEN----KAYDSFGSLKQLKILDLGCNFFNDSILP 142
               L    + ++SL+L     R                 +  L+ L L       +  P
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 143 YL--NTLTSLTTLILYSNSIEGSGTMQGLAN---LRYLQVLDLSWNENITSGSLTRLGLA 197
            L   T   L  L L + S                  L+VL ++      S + +   + 
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA---QAHSLNFSCEQVR 170

Query: 198 NLTNLKELDLRGCGITTSQGLA------DLPNLKTLDLRDCGITTIQG-----LAKLKNL 246
               L  LDL        +GL         P L+ L LR+ G+ T  G      A    L
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           + LDLS N++  +  +        L  L+L   G+  +   +  
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 35/179 (19%), Positives = 53/179 (29%), Gaps = 15/179 (8%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSI---- 140
           + L          L+ L+++      F              L  LDL  N          
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLIS 193

Query: 141 LPYLNTLTSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198
                   +L  L L +  +E          A    LQ LDLS N ++   +        
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SL-RDAAGAPSCDW 251

Query: 199 LTNLKELDLRGCGITT-SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
            + L  L+L   G+    +GL     L  LDL    +       +L  +  L L  N  
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 16/214 (7%)

Query: 82  TSASLLNMSLFHPFEELQSLNLSDNWFRG-FYENKAYDSFGSLKQLKILDLGCNFFNDSI 140
            S  L           LQ L L +    G         +   L  L + ++     +  +
Sbjct: 81  PSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL 140

Query: 141 LPYLNTL-TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTR-LGLAN 198
                 L   L  L +       + + + +     L  LDLS N  +    L   L    
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 199 LTNLKELDLRGCGITT-----SQGLADLPNLKTLDLRDCGITTI---QGLAKLKNLEALD 250
              L+ L LR  G+ T     S   A    L+ LDL    +              L +L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 251 LSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
           LS+  +   +  +GL     L +LDL    +   
Sbjct: 260 LSFTGLK-QV-PKGL--PAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 15/138 (10%)

Query: 82  TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141
               L++      F  LQ L L +                +  QL+ LDL  N   D+  
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETP-SGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 142 P-YLNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198
               +  + L +L L    ++    G    L       VLDLS+N  +            
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAKL------SVLDLSYN-RLDRNPS----PDE 294

Query: 199 LTNLKELDLRGCGITTSQ 216
           L  +  L L+G     S+
Sbjct: 295 LPQVGNLSLKGNPFLDSE 312

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.2 bits (203), Expect = 8e-18
 Identities = 36/236 (15%), Positives = 87/236 (36%), Gaps = 9/236 (3%)

Query: 59  NATTRRVMQLSLTYTERLNYYDRTSASLLNMSLF-HPFEELQSLNLSDNWFRGFYENKAY 117
           N+  R +  +  T     +  +      L+   F +    L++L++       F   ++Y
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 118 DSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV 177
             +     + I +   +      +   + ++    L   +N +      +   +L  L+ 
Sbjct: 295 -IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELET 352

Query: 178 LDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLAD---LPNLKTLDLRDCGI 234
           L L  N  +   S        + +L++LD+    ++  +   D     +L +L++    +
Sbjct: 353 LILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 235 TTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           T          ++ LDL  N I  S+  + +  L  L+ L++    + ++   IF 
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIK-SI-PKQVVKLEALQELNVASNQLKSVPDGIFD 465

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.2 bits (203), Expect = 9e-18
 Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 9/196 (4%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
                 ++  F  +   N + +  R             +     LD   N   D++    
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMV----HMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGL-ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
             LT L TLIL  N ++    +  +   ++ LQ LD+S N +++     +   +   +L 
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSY-DEKKGDCSWTKSLL 402

Query: 204 ELDLRGCGITTSQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNINGSLES 262
            L++    +T +      P +K LDL    I +I + + KL+ L+ L+++ N +  S+  
Sbjct: 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPD 461

Query: 263 QGLADLPNLKILDLRD 278
                L +L+ + L  
Sbjct: 462 GIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 15/235 (6%)

Query: 64  RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRG-FYENKAYDSFGS 122
           ++          LN  + T  S + +        +   ++S+   +G         S  S
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSW 182
           LK L I  +  + F           +++       +       M   + +     LD S 
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSN 333

Query: 183 NENITSGSLTRLGLANLTNLKELDLRGCGITT----SQGLADLPNLKTLDLRDCGITTI- 237
           N  +T          +LT L+ L L+   +      ++    + +L+ LD+    ++   
Sbjct: 334 N-LLTD--TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 238 --QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
                +  K+L +L++S N +  ++        P +K+LDL    + +I  ++ K
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIKSIPKQVVK 442

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 12/200 (6%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           L  S      +L+ L +S N  +          F   ++L+ LDL  N      +   + 
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKL--VKIS-CHP 88

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
             +L  L L  N+ +     +   N+  L+ L LS   ++   S+    +A+L   K L 
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVL--PIAHLNISKVLL 145

Query: 207 LRGCGITTSQGLADLPNLKTLDLR--DCGITTIQGLAKLKNLEALDLSWNNINGSLESQG 264
           + G      +    L +  T  L            +  +      +L  +NI   LE   
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 265 LADLPNLKILDLRDCGMTTI 284
            +   ++      +  ++ +
Sbjct: 206 CSYFLSILAKLQTNPKLSNL 225

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDC 232
             +L++S N  I+   L    + +L+ L+ L +    I             L+ LDL   
Sbjct: 23  TTILNISQN-YISE--LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 233 GITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
            +  I       NL+ LDLS+N  +     +   ++  LK L L    +         
Sbjct: 80  KLVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 9e-08
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 25/152 (16%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS---------GSLTRLGLAN 198
              T L +  N I        + +L  L++L +S N  I             L  L L++
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSH 78

Query: 199 ----------LTNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTIQGLAKLKN 245
                       NLK LDL           +   ++  LK L L    +     +  + +
Sbjct: 79  NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS-VLPIAH 137

Query: 246 LEALDLSWNNINGSLESQGLADLPNLKILDLR 277
           L    +         E +    L +     L 
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 26/242 (10%), Positives = 59/242 (24%), Gaps = 38/242 (15%)

Query: 85  SLLNMSLFHPFEELQSLNLSDN------------------WFRGFYENKAYDSFGSLKQL 126
           +L     F    +L+ L LS                               +    L+  
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

Query: 127 KILDLGCNFFNDSILPYL----------NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176
               L   F  +    ++            L+++  ++  +        +  L     L 
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLP----NLKTLDLRDC 232
            L L+  E   +  +  L L   T +    +    +       D      +LK L +   
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 233 GITTIQGLA-----KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK 287
                            N+   + + +     +     + +     LD  +  +T    +
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 288 IF 289
             
Sbjct: 343 NC 344

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 27/205 (13%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTTLIL 155
            ++L+LS N  R         SF S  +L++LDL         +      +L+ L+TLIL
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLIL 83

Query: 156 YSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213
             N I+    G   GL++L+    L      N+   SL    + +L  LKEL++    I 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQK---LVAVET-NLA--SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 214 TSQG---LADLPNLKTLDLRDCGITTI-----QGLAKLKNLEA-LDLSWNNINGSLESQG 264
           + +     ++L NL+ LDL    I +I     + L ++  L   LDLS N +N  ++  G
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP-G 195

Query: 265 LADLPNLKILDLRDCGMTTIQGKIF 289
                 LK L L    + ++   IF
Sbjct: 196 AFKEIRLKELALDTNQLKSVPDGIF 220

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%)

Query: 148 TSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNE--NITSGSLTRLGLANLTNLK 203
            S   L L  N +   GS +     +   LQVLDLS  E   I  G+       +L++L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHLS 79

Query: 204 ELDLRGCGITTSQG--LADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGS 259
            L L G  I +      + L +L+ L   +  + +++      LK L+ L+++ N I  S
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-S 138

Query: 260 LESQGL-ADLPNLKILDLRDCGMTTIQGKIF 289
            +     ++L NL+ LDL    + +I     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 25/199 (12%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTS 149
           F  F ELQ L+LS    +   +     ++ SL  L  L L  N      L     + L+S
Sbjct: 48  FFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPI--QSLALGAFSGLSS 101

Query: 150 LTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGL-ANLTNLKELD 206
           L  L+    ++    +  +  L  L+    L+++ N  I   S       +NLTNL+ LD
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKE---LNVAHN-LIQ--SFKLPEYFSNLTNLEHLD 155

Query: 207 LRGCGITT--SQGLADLPNLK----TLDLRDCGITTIQ-GLAKLKNLEALDLSWNNINGS 259
           L    I +     L  L  +     +LDL    +  IQ G  K   L+ L L  N +  S
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-S 214

Query: 260 LESQGLADLPNLKILDLRD 278
           +       L +L+ + L  
Sbjct: 215 VPDGIFDRLTSLQKIWLHT 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.1 bits (195), Expect = 4e-17
 Identities = 41/201 (20%), Positives = 69/201 (34%), Gaps = 19/201 (9%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-- 142
            ++    F  F +L+ + +S N      E      F +L +L  + +     N   +   
Sbjct: 43  RVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIE-KANNLLYINPE 98

Query: 143 YLNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT 200
               L +L  L++ +  I+                  LD+  N NI   ++ R     L+
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL---LDIQDNINIH--TIERNSFVGLS 153

Query: 201 -NLKELDLRGCGITTSQGLA-DLPNLKTLDLRDC-GITTIQG--LAKLKNLEALDLSWNN 255
                L L   GI      A +   L  L+L D   +  +             LD+S   
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 256 INGSLESQGLADLPNLKILDL 276
           I+ SL S GL +L  L+    
Sbjct: 214 IH-SLPSYGLENLKKLRARST 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 145 NTLTSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
           +   +   L      +     G   G  +L  +   ++S N+ +    +     +NL  L
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI---EISQNDVLEV--IEADVFSNLPKL 81

Query: 203 KELDLRGC-GITT--SQGLADLPNLKTLDLRDCGITTIQGLAK--LKNLEALDLSWNNIN 257
            E+ +     +     +   +LPNL+ L + + GI  +  + K        LD+  N   
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 141

Query: 258 GSLESQGLADLP-NLKILDLRDCGMTTIQGKIFK 290
            ++E      L     IL L   G+  I    F 
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 36/208 (17%), Positives = 64/208 (30%), Gaps = 25/208 (12%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSLTTL 153
                 L       R   +     +F     L+ +++  N   + I     + L  L  +
Sbjct: 29  PRNAIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84

Query: 154 -ILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC 210
            I  +N++        Q L NL+YL    +S    I    L  +   +      LD++  
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYL---LISNT-GIKH--LPDVHKIHSLQKVLLDIQDN 138

Query: 211 GITTS------QGLADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSLES 262
               +       GL+       L L   GI  I   A    +  E      NN+   L +
Sbjct: 139 INIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPN 195

Query: 263 QGLADLPNLKILDLRDCGMTTIQGKIFK 290
                     ILD+    + ++     +
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLE 223

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 22/172 (12%)

Query: 91  LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSL 150
            F     LQ L +S+   +   +           Q  +LD+  N    +I    N+   L
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIER--NSFVGL 152

Query: 151 T----TLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
           +     L L  N I+   +    G         L+LS N N+    L        +    
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDE----LNLSDNNNLEE--LPNDVFHGASGPVI 206

Query: 205 LDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWN 254
           LD+    I +  S GL +L  L+     +  +  +  L KL  L    L++ 
Sbjct: 207 LDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPTLEKLVALMEASLTYP 256

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLAD-LPNLKTLDLRDCGIT 235
           ++ L+  E I           N    +ELDLRG  I   + L   L     +D  D  I 
Sbjct: 1   MVKLT-AELIE----QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR 55

Query: 236 TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285
            + G   L+ L+ L ++ N I   +       LP+L  L L +  +  + 
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELG 104

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
           L +  IE         N    + LDL     I    +  LG A L     +D     I  
Sbjct: 4   LTAELIE---QAAQYTNAVRDRELDL-RGYKIPV--IENLG-ATLDQFDAIDFSDNEIRK 56

Query: 215 SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLK 272
             G   L  LKTL + +  I  I       L +L  L L+ N++    +   LA L +L 
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 273 ILDLRDCGMTTIQG 286
            L +    +T  + 
Sbjct: 117 YLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 24/147 (16%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGL-ANLRYLQVLDLSWNENITSGSLTRL-GLANLTN 201
                    L L    I     ++ L A L     +D S NE      + +L G   L  
Sbjct: 15  YTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNE------IRKLDGFPLLRR 65

Query: 202 LKELDLRGCGITTSQG--LADLPNLKTLDLRDCGIT---TIQGLAKLKNLEALDLSWNNI 256
           LK L +    I          LP+L  L L +  +     +  LA LK+L  L +  N +
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

Query: 257 NGSLESQG-----LADLPNLKILDLRD 278
                 +      +  +P +++LD + 
Sbjct: 126 T---NKKHYRLYVIYKVPQVRVLDFQK 149

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 205 LDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGL-AKLKNLEALDLSWNNINGSLESQ 263
           + L    I  +    +    + LDLR   I  I+ L A L   +A+D S N I   L+  
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLD-- 58

Query: 264 GLADLPNLKILDLRDCGMTTIQGKIFK 290
           G   L  LK L + +  +  I   + +
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQ 85

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 91  LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSL 150
           L    ++  +++ SDN  R        D F  L++LK L +  N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 151 TTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLR 208
           T LIL +NS+   G +  LA+L+ L  L +  N  +T+    RL  +  +  ++ LD +
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 7e-17
 Identities = 46/175 (26%), Positives = 65/175 (37%), Gaps = 27/175 (15%)

Query: 126 LKILDLGCNFFNDSILP--YLNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLS 181
             +LDL  N  +  +        LT+L +L+L  N +    S     + NLRYL   DLS
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL---DLS 96

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQ- 238
            N ++ +  L     ++L  L+ L L    I         D+  L+ L L    I+    
Sbjct: 97  SN-HLHT--LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 239 ----GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR--------DCGM 281
                  KL  L  LDLS N +   L    L  LP      L         DC +
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)

Query: 173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLR 230
            Y  +LDLS N N++           LTNL  L L    +    S+    +PNL+ LDL 
Sbjct: 39  SYTALLDLSHN-NLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 231 DCGITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288
              + T+     + L+ LE L L  N+I   ++     D+  L+ L L    ++    ++
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 289 F 289
            
Sbjct: 156 I 156

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 11/149 (7%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207
           +    L L  N++           L  L  L LS N ++    ++      + NL+ LDL
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNF--ISSEAFVPVPNLRYLDL 95

Query: 208 RGCGITT--SQGLADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSLES- 262
               + T      +DL  L+ L L +  I  +   A   +  L+ L LS N I+      
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 263 --QGLADLPNLKILDLRDCGMTTIQGKIF 289
             +    LP L +LDL    +  +     
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 200 TNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWN 254
           +    LDL    ++          L NL +L L    +  I   A   + NL  LDLS N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
           +++ +L+    +DL  L++L L +  +  +    F+
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 11/120 (9%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSL 150
           F P   L+ L+LS N      E      F  L+ L++L L  N     +       +  L
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQL 138

Query: 151 TTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
             L L  N I       ++    L  L +LDLS N  +    L    L  L    +  L 
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLK--KLPLTDLQKLPAWVKNGLY 195

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 9e-17
 Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 33/215 (15%)

Query: 96  EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND----SILPYLNTLTSLT 151
            ++QSL++         + +  +    L+Q +++ L      +     I   L    +L 
Sbjct: 3   LDIQSLDIQCE---ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 152 TLILYSNSIEGSGTMQGLANL-----RYLQVLDLSWNENITSGSLTRLG--LANLTNLKE 204
            L L SN +   G +  +          +Q L L     +T      L   L  L  L+E
Sbjct: 60  ELNLRSNELGDVG-VHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQE 117

Query: 205 LDLRGCGITTS--QGLADL-----PNLKTLDLRDCGITTI------QGLAKLKNLEALDL 251
           L L    +  +  Q L +        L+ L L  C ++          L    + + L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 252 SWNNINGS---LESQGLADLP-NLKILDLRDCGMT 282
           S N+IN +   +  QGL D P  L+ L L  CG+T
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 45/221 (20%)

Query: 98  LQSLNLSDNWF---------RGFYENKAYDSFGSLKQLKILDLGCNFFND----SILPYL 144
            + L +S+N           +G  ++          QL+ L L            +   +
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPC--------QLEALKLESCGVTSDNCRDLCGIV 223

Query: 145 NTLTSLTTLILYSNSIEGSGTMQ----GLANLRYLQVLDLSWNENITSGSLTRLG--LAN 198
            +  SL  L L SN +   G  +     L     L+ L +     IT+     L   L  
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRA 282

Query: 199 LTNLKELDLRGCGITTS--QGLADL-----PNLKTLDLRDCGITTI------QGLAKLKN 245
             +LKEL L G  +     + L +        L++L ++ C  T          LA+ + 
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 246 LEALDLSWNNINGS---LESQGLAD-LPNLKILDLRDCGMT 282
           L  L +S N +  +      QGL      L++L L DC ++
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 30/227 (13%)

Query: 84  ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY 143
             +L   L     +L++L L                  S   L+ L LG N   D  +  
Sbjct: 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246

Query: 144 L-----NTLTSLTTLILYSNSIEGSGTM---QGLANLRYLQVLDLSWNENITSGSLTRLG 195
           L     +  + L TL ++   I   G     + L     L+ L L+ N  +       L 
Sbjct: 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLC 305

Query: 196 LA---NLTNLKELDLRGCGITT------SQGLADLPNLKTLDLRDCGITT--IQGLAKL- 243
                    L+ L ++ C  T       S  LA    L  L + +  +    ++ L +  
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365

Query: 244 ----KNLEALDLSWNNIN----GSLESQGLADLPNLKILDLRDCGMT 282
                 L  L L+  +++     SL +  L    +L+ LDL +  + 
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSL-AATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 44/227 (19%), Positives = 71/227 (31%), Gaps = 26/227 (11%)

Query: 82  TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141
               LL   L  P   L+ L L                  +    K L +  N  N++ +
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187

Query: 142 PYL-----NTLTSLTTLILYSNSIEGSGTM---QGLANLRYLQVLDLSWNENITSG--SL 191
             L     ++   L  L L S  +           +A+   L+ L L  N+    G   L
Sbjct: 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247

Query: 192 TRLGLANLTNLKELDLRGCGITT------SQGLADLPNLKTLDLRDCGIT--TIQGLAKL 243
               L   + L+ L +  CGIT        + L    +LK L L    +     + L + 
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307

Query: 244 -----KNLEALDLSWNNI-NGSLE--SQGLADLPNLKILDLRDCGMT 282
                  LE+L +   +         S  LA    L  L + +  + 
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 5e-16
 Identities = 43/214 (20%), Positives = 64/214 (29%), Gaps = 31/214 (14%)

Query: 98  LQSLNLSDNWFRGF-YENKAYDSFGSLKQLKILDLGCNFFND----SILPYLNTLTSLTT 152
           L+ L L  N                   +L+ L +            +   L    SL  
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 153 LILYSNSIEGSGTMQGLANLRY----LQVLDLSWNENITSGSLTRLG--LANLTNLKELD 206
           L L  N +   G       L      L+ L +    + T+   +     LA    L EL 
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQ 347

Query: 207 LRGCGITT------SQGLAD-LPNLKTLDLRDCGITTI------QGLAKLKNLEALDLSW 253
           +    +         QGL      L+ L L DC ++          L    +L  LDLS 
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 254 NNINGSLESQGLADL-----PNLKILDLRDCGMT 282
           N + G      L +        L+ L L D   +
Sbjct: 408 NCL-GDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 28/226 (12%)

Query: 84  ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY 143
              +   L  P  ++Q L+L +    G        +  +L  L+ L L  N   D+ L  
Sbjct: 73  VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132

Query: 144 L-----NTLTSLTTLILYSNSIEGSGT---MQGLANLRYLQVLDLSWNENITSGSLTRLG 195
           L     +    L  L L   S+  +        L      + L +S N +I    +  L 
Sbjct: 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLC 191

Query: 196 LA---NLTNLKELDLRGCGITT------SQGLADLPNLKTLDLRDCGITT--IQGLAK-- 242
                +   L+ L L  CG+T+         +A   +L+ L L    +    +  L    
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251

Query: 243 ---LKNLEALDLSWNNIN---GSLESQGLADLPNLKILDLRDCGMT 282
                 L  L +    I         + L    +LK L L    + 
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 41/239 (17%), Positives = 84/239 (35%), Gaps = 15/239 (6%)

Query: 46  PSDC-CDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLS 104
              C C   E  +      + +      T+ L     T    +    F     +  + +S
Sbjct: 5   SPPCECHQEEDFRVTCKDIQRIPSLPPSTQTL-KLIETHLRTIPSHAFSNLPNISRIYVS 63

Query: 105 DNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-YLNTLTSLTTLILYSNSIEGS 163
            +      E+ +   F +L ++  +++        I P  L  L  L  L +++  ++  
Sbjct: 64  IDVTLQQLESHS---FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120

Query: 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN-LKELDLRGCGITT-SQGLADL 221
             +  + +     +L+++ N  +T  S+       L N    L L   G T+      + 
Sbjct: 121 PDLTKVYSTDIFFILEITDNPYMT--SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178

Query: 222 PNLKTLDLRDC-GITTIQGLA--KLKN-LEALDLSWNNINGSLESQGLADLPNLKILDL 276
             L  + L     +T I   A   + +    LD+S  ++  +L S+GL  L  L   + 
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 14/152 (9%)

Query: 147 LTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
             S  TL L    +    S     L N+  +    +S +  +    L      NL+ +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRI---YVSIDVTLQQ--LESHSFYNLSKVTH 84

Query: 205 LDLRGCGITTS---QGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA---LDLSWNNING 258
           +++R     T      L +LP LK L + + G+     L K+ + +    L+++ N    
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 259 SLESQGLADLPN-LKILDLRDCGMTTIQGKIF 289
           S+       L N    L L + G T++QG  F
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 33/209 (15%), Positives = 76/209 (36%), Gaps = 29/209 (13%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-NTLTSLTTLIL 155
             Q+L L +   R    +    +F +L  +  + +  +     +  +    L+ +T + +
Sbjct: 32  STQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 156 YSN----SIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL----GLANLTNLKELDL 207
            +      I+    ++ L  L++L    +          L        + +      L++
Sbjct: 88  RNTRNLTYID-PDALKELPLLKFL---GIFNT------GLKMFPDLTKVYSTDIFFILEI 137

Query: 208 RG-CGITT--SQGLADLPN-LKTLDLRDCGITTIQGLA-KLKNLEALDLSWNNINGSLES 262
                +T+        L N   TL L + G T++QG A     L+A+ L+ N     ++ 
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 263 QGLADLPN-LKILDLRDCGMTTIQGKIFK 290
                + +   +LD+    +T +  K  +
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLE 226

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 39/204 (19%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY 156
            L+SL  S N      E        SLK L + +      +D           L  L + 
Sbjct: 92  HLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVS 139

Query: 157 SNSIEGSGTMQGLANLRYLQVLDLSWNENITS-----GSLTRLGLA-----------NLT 200
           +N +E    +  L N  +L+++D+  N ++        SL  +              NL 
Sbjct: 140 NNQLE---KLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPELQNLP 195

Query: 201 NLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSL 260
            L  +      +     L    +L+++   +  +  +  L  L  L  +    N +    
Sbjct: 196 FLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 253

Query: 261 ESQGLADLPNLKILDLRDCGMTTI 284
           +       P+L+ L++RD  +T +
Sbjct: 254 DL-----PPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 33/223 (14%), Positives = 70/223 (31%), Gaps = 35/223 (15%)

Query: 67  QLSLTYTERLNYYDRTSASLLNMSLFH----PFEELQSLNLSDNWFRGFYENKAYDSFGS 122
           +    ++E        +     M++         +   L L++       E         
Sbjct: 38  EYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE--------L 89

Query: 123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSW 182
              L+ L   CN     +     +L SL        ++              L+ L +S 
Sbjct: 90  PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD--------LPPLLEYLGVSN 140

Query: 183 NENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLA 241
           N+      L +L  L N + LK +D+    +     L   P+L+ +   +  +  +  L 
Sbjct: 141 NQ------LEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQ 192

Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
            L  L A+    N++   L         +L+ +   +  +  +
Sbjct: 193 NLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 28/195 (14%)

Query: 118 DSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGT----MQGL---- 169
               ++K         + +  +  P       +    L       +        GL    
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87

Query: 170 ANLRYLQVLDLSWNENITS-----GSLTRLGLANL---------TNLKELDLRGCGITTS 215
               +L+ L  S N ++T       SL  L + N            L+ L +    +   
Sbjct: 88  ELPPHLESLVASCN-SLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 216 QGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275
             L +   LK +D+ +  +  +  L    +LE +    N +   L    L +LP L  + 
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIY 201

Query: 276 LRDCGMTTIQGKIFK 290
             +  +  +      
Sbjct: 202 ADNNSLKKLPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 44/213 (20%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L+S+   +N               +L  L  +    N      LP  +   SL  L +  
Sbjct: 217 LESIVAGNNILEEL------PELQNLPFLTTIYADNNLL--KTLP--DLPPSLEALNVRD 266

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITS--GSLTRLGLAN---------LTNLKELD 206
           N +  +   +   +L +L V +  ++  ++    +L  L  ++           +L+EL+
Sbjct: 267 NYL--TDLPELPQSLTFLDVSENIFS-GLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 323

Query: 207 LRGCGITTSQGL-ADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNIN------GS 259
           +    +     L A  P L+ L      +  +  L   +NL+ L + +N +        S
Sbjct: 324 VSNNKLIE---LPALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDIPES 378

Query: 260 LE----SQGLADLP----NLKILDLRDCGMTTI 284
           +E    +  LA++P    NLK L +    +   
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 140 ILPYLNTLTSLTTLILYSNSIEGSGTM-QGLANLRYLQVLDLSWNE----------NITS 188
           I P   + T L   + +S+++     M     N++       +W+E              
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59

Query: 189 GSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLE 247
            +++RL         EL+L   G+++       P+L++L      +T + +    LK+L 
Sbjct: 60  MAVSRLRDCLDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLL 117

Query: 248 ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
             + +   ++           P L+ L + +  +  +
Sbjct: 118 VDNNNLKALSDL--------PPLLEYLGVSNNQLEKL 146

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 44/190 (23%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
              L  LN S N  R                L+ L++  N      LP       L  LI
Sbjct: 296 PPNLYYLNASSNEIRSL--------CDLPPSLEELNVSNNKL--IELP--ALPPRLERLI 343

Query: 155 LYSNSIEGSGTMQGL-ANLRYLQVLDLSWNENITS-----GSLTRLGLAN-LTNLKELDL 207
              N +        +    + L+ L + +N  +        S+  L + + L  + EL  
Sbjct: 344 ASFNHL------AEVPELPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPEL-- 394

Query: 208 RGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD 267
                          NLK L +    +     +   +++E L ++   +    E      
Sbjct: 395 -------------PQNLKQLHVETNPLREFPDI--PESVEDLRMNSERVVDPYEFA-HET 438

Query: 268 LPNLKILDLR 277
              L+     
Sbjct: 439 TDKLEDDVFE 448

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 53/251 (21%), Positives = 84/251 (33%), Gaps = 48/251 (19%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS-------LKQLKILDLGCNFFN 137
            +   S F        L+L+ N  +     +   +F         L  + + D+   +  
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSI-CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 138 DSILPYLNTLTSLTTLILYSNSIEGS--GTMQGLANLRYLQVLDLSWNENITSG------ 189
                     TS+TTL L  N  + S             +Q L LS + N+ S       
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 190 --------------SLTRLGL-------------ANLTNLKELDLRGCGITT--SQGLAD 220
                          +    L             ++ T+L++L L    I          
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 221 LPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
           L +L  L+L    + +I       L  LE LDLS+N+I  +L  Q    LPNLK L L  
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDT 380

Query: 279 CGMTTIQGKIF 289
             + ++   IF
Sbjct: 381 NQLKSVPDGIF 391

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.1 bits (164), Expect = 8e-13
 Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 25/223 (11%)

Query: 71  TYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD 130
            +   +      S + LN + F   ++LQ L +          N   ++F  L  L IL 
Sbjct: 30  AHVNYV-DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILK 85

Query: 131 LGCNFFNDSILPY--LNTLTSLTTLILYSNSIEGSGTMQGL-ANLRYLQVLDLSWNENIT 187
           L  N F    L     N L +L  L L   +++G+         L  L++L L  N NI 
Sbjct: 86  LDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIK 142

Query: 188 S----------GSLTRLGLAN--LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGIT 235
                           L L    + ++ E DL          L  L ++   D+ +  + 
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLG 201

Query: 236 TIQGLA--KLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276
             +     K  ++  LDLS N    S+  +    +   KI  L
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 11/138 (7%)

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
           L  L  L +   +            L  L +L L +N       L       L NL+ L 
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFL--QLETGAFNGLANLEVLT 109

Query: 207 LRGCGITTSQ----GLADLPNLKTLDLRDCGITTIQ---GLAKLKNLEALDLSWNNINGS 259
           L  C +  +         L +L+ L LRD  I  IQ       ++    LDL++N +  S
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-S 168

Query: 260 LESQGLADLPNLKILDLR 277
           +  + L +        LR
Sbjct: 169 ICEEDLLNFQGKHFTLLR 186

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG---LADLPNLKTLDLRD 231
           +  +DLS N +I    L     + L +L+ L +                L +L  L L  
Sbjct: 32  VNYVDLSLN-SIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 232 CGITTIQG--LAKLKNLEALDLSWNNINGSLESQGL-ADLPNLKILDLRDCGMTTIQ 285
                ++      L NLE L L+  N++G++ S      L +L++L LRD  +  IQ
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 14/123 (11%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-NTLT 148
           S+F  F +L+ L L+ N      +N    +F  L  L  L+L  NF   SI   +   L 
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFL-GSIDSRMFENLD 347

Query: 149 SLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
            L  L L  N I   G  +  GL NL+ L    L  N  + S  +       LT+L+++ 
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKEL---ALDTN-QLKS--VPDGIFDRLTSLQKIW 401

Query: 207 LRG 209
           L  
Sbjct: 402 LHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 215 SQGLADLPNL----KTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSLESQGLADL 268
           ++GL  +P L      +DL    I  +   +  +L++L+ L +        + +     L
Sbjct: 19  NRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78

Query: 269 PNLKILDLRDCGMTTIQGKIFK 290
            +L IL L       ++   F 
Sbjct: 79  SSLIILKLDYNQFLQLETGAFN 100

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 200 TNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG---LAKLKNLEALDLSWN 254
            ++  +DL    I        + L +L+ L +       +        L +L  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMT--TIQGKIFK 290
                LE+     L NL++L L  C +    + G  FK
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 2e-15
 Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 19/189 (10%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
            ++   L+LS+N    F       +     +L  L+L       + L    TL  L TL 
Sbjct: 30  PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLD 83

Query: 155 LYSNSIEG-SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213
           L  N ++      Q L  L     LD+S+N  +T  SL    L  L  L+EL L+G  + 
Sbjct: 84  LSHNQLQSLPLLGQTLPALTV---LDVSFNR-LT--SLPLGALRGLGELQELYLKGNELK 137

Query: 214 T-SQGL-ADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLP 269
           T   GL    P L+ L L +  +T +    L  L+NL+ L L  N++  ++  +G     
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI-PKGFFGSH 195

Query: 270 NLKILDLRD 278
            L    L  
Sbjct: 196 LLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 48/170 (28%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNEN 185
             IL L  N      L  L   T LT L L    +        L  L  L   DLS N  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL---DLSHN-- 87

Query: 186 ITSGSLTRL--GLANLTNLKELDLRGCGITT-SQGLAD-LPNLKTLDLRDCGITTIQG-- 239
                L  L      L  L  LD+    +T+   G    L  L+ L L+   + T+    
Sbjct: 88  ----QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 240 LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           L     LE L L+ NN+   L +  L  L NL  L L++  + TI    F
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 51/192 (26%), Positives = 72/192 (37%), Gaps = 25/192 (13%)

Query: 71  TYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD 130
             T  L +         +++   P+  L  LNL         E       G+L  L  LD
Sbjct: 31  KDTTIL-HLSENLLYTFSLATLMPYTRLTQLNLDRA------ELTKLQVDGTLPVLGTLD 83

Query: 131 LGCNFFNDSILPYLNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITS 188
           L  N    S+     TL +LT L +  N +     G ++GL  L+    L L  NE    
Sbjct: 84  LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE---LYLKGNE---- 135

Query: 189 GSLTRLG---LANLTNLKELDLRGCGITT-SQGLAD-LPNLKTLDLRDCGITTI-QGLAK 242
             L  L    L     L++L L    +T    GL + L NL TL L++  + TI +G   
Sbjct: 136 --LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 243 LKNLEALDLSWN 254
              L    L  N
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 19/151 (12%)

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANL-----RYLQVLDLSWNENITSGSLTRLGLANL 199
           + + S   +               L  L     +   +L LS N  + +   +   L   
Sbjct: 7   SKVASHLEVNCDKR---------NLTALPPDLPKDTTILHLSEN-LLYT--FSLATLMPY 54

Query: 200 TNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGL-AKLKNLEALDLSWNNING 258
           T L +L+L    +T  Q    LP L TLDL    + ++  L   L  L  LD+S+N +  
Sbjct: 55  TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT- 113

Query: 259 SLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           SL    L  L  L+ L L+   + T+   + 
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLL 144

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 12/146 (8%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGL-ANLTNLKELD 206
              T L L  N +  + ++  L     L  L+L   E      LT+L +   L  L  LD
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE------LTKLQVDGTLPVLGTLD 83

Query: 207 LRGCGITT-SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQ 263
           L    + +       LP L  LD+    +T++    L  L  L+ L L  N +  +L   
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPG 142

Query: 264 GLADLPNLKILDLRDCGMTTIQGKIF 289
            L   P L+ L L +  +T +   + 
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLL 168

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 73.2 bits (180), Expect = 5e-15
 Identities = 35/245 (14%), Positives = 71/245 (28%), Gaps = 43/245 (17%)

Query: 83  SASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLK----QLKILDLGCNFFND 138
           S+  L  +L      +  L+L  N    F    + +   +       +  L+L  N    
Sbjct: 96  SSDELVKTLAAIPFTITVLDLGWN---DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152

Query: 139 SILPYL-----NTLTSLTTLILYSNSIEGSGTMQGLANL-----RYLQVLDLSWNENITS 188
                L         ++ +L L  N++        LA         +  LDLS N  +  
Sbjct: 153 KSSDELIQILAAIPANVNSLNLRGNNLASKN-CAELAKFLASIPASVTSLDLSAN-LLGL 210

Query: 189 GSLTRLGLA---NLTNLKELDLRGCGITT------SQGLADLPNLKTLDLRDCGITTI-- 237
            S   L         ++  L+L    +              L +L+T+ L    +  +  
Sbjct: 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270

Query: 238 -------QGLAKLKNLEALDLSWNNINGSLESQGLADL-----PNLKILDLRDCGMTTIQ 285
                       ++ +  +D +   I     S  +++L         +  L +  +   Q
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKEI-HPSHSIPISNLIRELSGKADVPSLLNQCLIFAQ 329

Query: 286 GKIFK 290
                
Sbjct: 330 KHQTN 334

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 73.2 bits (180), Expect = 5e-15
 Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 39/236 (16%)

Query: 83  SASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSL-----KQLKILDLGCNFFN 137
           S   L  +  +    + SLNLS N        K  D    +       +  L+L  NF +
Sbjct: 38  STVELIQAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANVTSLNLSGNFLS 93

Query: 138 DSILPYL-----NTLTSLTTLILYSNSIEGSGTM---QGLANL-RYLQVLDLSWNENITS 188
                 L         ++T L L  N      +    Q  +NL   +  L+L  N ++  
Sbjct: 94  YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGI 152

Query: 189 GSLTRLGLA---NLTNLKELDLRGCGITT------SQGLADLP-NLKTLDLRDCGITT-- 236
            S   L         N+  L+LRG  + +      ++ LA +P ++ +LDL    +    
Sbjct: 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212

Query: 237 IQGLAKL-----KNLEALDLSWNNINGS---LESQGLADLPNLKILDLRDCGMTTI 284
              LA +      ++ +L+L  N ++G            L +L+ + L    +  +
Sbjct: 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 40/220 (18%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLK----QLKILDLGCNFFNDSILPYL-----NTLT 148
           + SL+LS N     Y     +   +       +  L+L  N         L         
Sbjct: 24  VTSLDLSLN---NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 149 SLTTLILYSNSIEGSGTMQGLANL-----RYLQVLDLSWNENITSGSLTRLGLA---NLT 200
           ++T+L L  N +        L          + VLDL WN + +S S +    A      
Sbjct: 81  NVTSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPA 138

Query: 201 NLKELDLRGCGITT------SQGLADLP-NLKTLDLRDCGITTI--QGLAKL-----KNL 246
           ++  L+LRG  +         Q LA +P N+ +L+LR   + +     LAK       ++
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 247 EALDLSWNNIN---GSLESQGLADLPN-LKILDLRDCGMT 282
            +LDLS N +     +  +   + +PN +  L+L    + 
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 28/165 (16%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLA-----NLRYLQVLDLSWNENITSGSLTRLGLA- 197
            +    +T+L L  N++        L          +  L+LS N ++   +   L    
Sbjct: 18  TSIPHGVTSLDLSLNNLYSIS-TVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQIL 75

Query: 198 --NLTNLKELDLRGCGITT------SQGLADLP-NLKTLDLRDCGIT--TIQGLAKL--- 243
                N+  L+L G  ++        + LA +P  +  LDL     +  +     +    
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 244 --KNLEALDLSWNNIN---GSLESQGLADLP-NLKILDLRDCGMT 282
              ++ +L+L  N++         Q LA +P N+  L+LR   + 
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.3 bits (149), Expect = 7e-11
 Identities = 35/205 (17%), Positives = 61/205 (29%), Gaps = 35/205 (17%)

Query: 83  SASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSL-----KQLKILDLGCNFFN 137
           S+  L   L      + SLNL  N       +K               +  LDL  N   
Sbjct: 154 SSDELIQILAAIPANVNSLNLRGNNLA----SKNCAELAKFLASIPASVTSLDLSANLLG 209

Query: 138 DSILPYL-----NTLTSLTTLILYSNSIEGSGTM---QGLANLRYLQVLDLSWNE--NIT 187
                 L     +    + +L L  N + G           +L++LQ + L ++   N++
Sbjct: 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269

Query: 188 SGSLTRLG--LANLTNLKELDLRGCGITTS--QGLADL-----PNLKTLDLRDCGITTIQ 238
                 LG    N+  +  +D  G  I  S    +++L            L +  +   Q
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQ 329

Query: 239 G-------LAKLKNLEALDLSWNNI 256
                   L     L     +   +
Sbjct: 330 KHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 25/152 (16%)

Query: 155 LYSNSIEGSGTM---QGLANLRYLQVLDLSWNENITSGSLTRLGLA---NLTNLKELDLR 208
           +        G+    +  +    +  LDLS N N+ S S   L  A      ++  L+L 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLS 59

Query: 209 GCGITT------SQGLADLP-NLKTLDLRDCGITT--IQGLAKL-----KNLEALDLSWN 254
           G  +         Q LA +P N+ +L+L    ++      L K        +  LDL WN
Sbjct: 60  GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119

Query: 255 NIN---GSLESQGLADLP-NLKILDLRDCGMT 282
           + +    S   Q  ++LP ++  L+LR   + 
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.0 bits (179), Expect = 9e-15
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 9/191 (4%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTS 149
           +L+  F E+    LS +     +         S      L+   N F DS+    +TL  
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 150 LTTLILYSNSIEG-SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
           L TLIL  N ++          N+  L+ LD+S N ++ S +  R   A   ++  L+L 
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRT-CAWAESILVLNLS 436

Query: 209 GCGITTSQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNINGSLESQGLAD 267
              +T S      P +K LDL +  I +I + +  L+ L+ L+++ N +  S+       
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495

Query: 268 LPNLKILDLRD 278
           L +L+ + L D
Sbjct: 496 LTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 45/297 (15%), Positives = 102/297 (34%), Gaps = 18/297 (6%)

Query: 2   HGYKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNAT 61
            G    L+   T +L +     S+  +  +  +      +   +  +        +    
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND---ENCQRLMTF 241

Query: 62  TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYD-SF 120
              + +        L + + T    + +  F     ++ LN+ +       + + +  S 
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301

Query: 121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDL 180
            +LK L I  +    F  S     +    +   +L  +       M    +      L+ 
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-PFIHMVCPPSPSSFTFLNF 360

Query: 181 SWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLP-NLKTLDLRDCGITTIQG 239
           + N   T       G + L  L+ L L+  G+     +A +  N+ +L+  D  + ++  
Sbjct: 361 TQNV-FTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 240 LA------KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
            A        +++  L+LS N + GS+        P +K+LDL +  + +I   +  
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMSIPKDVTH 471

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 24/206 (11%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND-SILPYLN 145
           L+  +F   ++L+ L++S N  +         S   +  L+ LDL  N F+   +     
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNI-------SCCPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 146 TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKEL 205
            LT LT L L +        +  +A+L    +L    + +I  G    L + N T L  L
Sbjct: 144 NLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH-L 201

Query: 206 DLRGCGITTSQGLADLPNLKTLDLRD------------CGITTIQGLAKLKNL--EALDL 251
                 + + Q    +  L  L L +              ++ +     L N+  + ++ 
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 252 SWNNINGSLESQGLADLPNLKILDLR 277
           +W       +      +  L I +L 
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLT 287

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 19/214 (8%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
             P   L+ L+LS N F      K    FG+L +L  L L    F    L  +  L  L+
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKE---FGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLS 172

Query: 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR--- 208
            ++L   S    G       +    VL L ++ N        + +  L +L+  +++   
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 209 ---GCGITTSQGLADLPNLKTLDLRDC-----GITTIQGLAKLKNLEALDLSWNNINGSL 260
                 +T    L   P L  + L+           +      + +E L++    I   +
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 261 ESQGLAD----LPNLKILDLRDCGMTTIQGKIFK 290
           + +        L +L I  +++      +  ++ 
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 12/174 (6%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           L M       EL+ L LS N  R          F   + L+ LD+  N      +     
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVSHNRL--QNISCCP- 119

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE--NITSGSLTRLGLANL-TNLK 203
           + SL  L L  N  +     +   NL  L  L LS  +   +    +  L L+ +  +L 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 204 ELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNIN 257
              ++G    + Q       +  L      + ++Q    +  L  L LS   +N
Sbjct: 180 SYHIKGGETESLQIPNTT--VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 29/154 (18%)

Query: 148 TSLTTLILYSNSIE--GSGTMQGLANLRYLQVLDLSWNENITS---------GSLTRLGL 196
                L L  NSI       +  L+ LR    L LS N  I S           L  L +
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRV---LRLSHNR-IRSLDFHVFLFNQDLEYLDV 107

Query: 197 AN----------LTNLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTIQGLAKL 243
           ++          + +L+ LDL           +   +L  L  L L       +  L  +
Sbjct: 108 SHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-LLPV 166

Query: 244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277
            +L    +  + ++  ++      L       L 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 32/194 (16%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTTLIL 155
            ++L+LS N                L +L++L L  N      L +        L  L +
Sbjct: 54  TKALSLSQNSISELRMP----DISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDV 107

Query: 156 YSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLA----NLTNLKELDLRG-- 209
             N ++ + +   +A+LR+   LDLS+N          L +     NLT L  L L    
Sbjct: 108 SHNRLQ-NISCCPMASLRH---LDLSFN------DFDVLPVCKEFGNLTKLTFLGLSAAK 157

Query: 210 ------CGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQ 263
                   +        L +L +  ++     ++Q          L    N++     + 
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH--LVFHPNSLFSVQVNM 215

Query: 264 GLADLPNLKILDLR 277
            +  L +L++ +++
Sbjct: 216 SVNALGHLQLSNIK 229

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKT 226
           +  ++++ L VLD S +       L          L+ L     G+T+   L  L  LK 
Sbjct: 14  RTPSDVKEL-VLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSIANLPKLNKLKK 68

Query: 227 LDLRDCGITTIQGL--AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
           L+L D  ++    +   K  NL  L+LS N I      + L  L NLK LDL +C +T +
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 285 QG 286
             
Sbjct: 129 ND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 194 LGLANLTNLKELDLRGCGITTSQ---GLADLPNLKTLDLRDCGITTIQGLAKLKNLEALD 250
           L     +++KEL L        +      +   L+ L   + G+T+I  L KL  L+ L+
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLE 70

Query: 251 LSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285
           LS N ++G LE       PNL  L+L    +  + 
Sbjct: 71  LSDNRVSGGLEVLAEK-CPNLTHLNLSGNKIKDLS 104

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 146 TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKE 204
           T + +  L+L ++                L+ L            LT +  L  L  LK+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG------LTSIANLPKLNKLKK 68

Query: 205 LDLRGCGITTSQGLAD--LPNLKTLDLRDCGIT---TIQGLAKLKNLEALDLSWNNINGS 259
           L+L    ++    +     PNL  L+L    I    TI+ L KL+NL++LDL    +   
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 260 LE--SQGLADLPNLKILDLRD 278
            +        LP L  LD  D
Sbjct: 129 NDYRENVFKLLPQLTYLDGYD 149

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 74  ERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGC 133
           + L   +  S       L   FEEL+ L+  +             +   L +LK L+L  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSD 73

Query: 134 NFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTR 193
           N  +  +        +LT L L  N I+   T++ L  L  L+ LDL   E +T+ +  R
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYR 132

Query: 194 LG-LANLTNLKELD 206
                 L  L  LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 212 ITTSQGLADLPNLKTLDLRDCGITTIQ---GLAKLKNLEALDLSWNNINGSLESQGLADL 268
           I          ++K L L +      +      + + LE L      +  S+    L  L
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA--NLPKL 63

Query: 269 PNLKILDLRDCGMTTIQGKIFK 290
             LK L+L D  ++     + +
Sbjct: 64  NKLKKLELSDNRVSGGLEVLAE 85

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKT 226
           +  A +R L VLD   + +     L     A   NL+ L L   G+ +   L  LP LK 
Sbjct: 21  RTPAAVREL-VLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISVSNLPKLPKLKK 75

Query: 227 LDLRDCGITTIQGL--AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
           L+L +  I     +   KL NL  L+LS N +      + L  L  LK LDL +C +T +
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 285 QG 286
             
Sbjct: 136 ND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQ---GLADLPNLKTLDLRDCGIT 235
            +     I       L       ++EL L  C     +     A+  NL+ L L + G+ 
Sbjct: 7   GMDMKRRIHL----ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI 62

Query: 236 TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
           ++  L KL  L+ L+LS N I G L+      LPNL  L+L  
Sbjct: 63  SVSNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTHLNLSG 104

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 14/141 (9%)

Query: 146 TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKE 204
           T  ++  L+L +            A    L+ L L          L  +  L  L  LK+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LISVSNLPKLPKLKK 75

Query: 205 LDLRGCGITTSQGLAD--LPNLKTLDLRDCGIT---TIQGLAKLKNLEALDLSWNNINGS 259
           L+L    I     +    LPNL  L+L    +    T++ L KL+ L++LDL    +   
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 260 LE--SQGLADLPNLKILDLRD 278
            +        LP L  LD  D
Sbjct: 136 NDYRESVFKLLPQLTYLDGYD 156

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 91  LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSL 150
           L   F  L+ L+L +             +   L +LK L+L  N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 151 TTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLR 208
           T L L  N ++   T++ L  L  L+ LDL   E +T+ +  R      L  L  LD  
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGY 155

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 212 ITTSQGLADLPNLKTLDLRDCGITTIQ---GLAKLKNLEALDLSWNNINGSLESQGLADL 268
           I           ++ L L +C     +     A+  NLE L L    +  S+    L  L
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS--NLPKL 70

Query: 269 PNLKILDLRDCGMTTIQGKIFK 290
           P LK L+L +  +      + +
Sbjct: 71  PKLKKLELSENRIFGGLDMLAE 92

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 41/205 (20%), Positives = 68/205 (33%), Gaps = 43/205 (20%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
             EL++L +S N                L +L I            LP L   + L  L 
Sbjct: 80  PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-----LPAL--PSGLCKLW 127

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS-----GSLTRLGLAN---------LT 200
           ++ N +              LQ L +S N  + S       L +L   N          +
Sbjct: 128 IFGNQLTSLP-----VLPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPS 181

Query: 201 NLKELDLRGCGITTSQGL-ADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGS 259
            L+EL +    + +   L      L  L   +  +T++  L     L+ L +S N +  S
Sbjct: 182 GLQELSVSDNQLAS---LPTLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT-S 235

Query: 260 LESQGLADLPNLKILDLRDCGMTTI 284
           L          LK L +    +T++
Sbjct: 236 LP----VLPSELKELMVSGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 5e-14
 Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 40/204 (19%)

Query: 96  EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLIL 155
             L  L +  N                   L+ L +  N      LP L   + L  L  
Sbjct: 121 SGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLAS--LPAL--PSELCKLWA 168

Query: 156 YSNSIEGSGTMQGLANLRYLQVLDLSWNENITS-----GSLTRLGLAN---------LTN 201
           Y+N +              LQ L +S N  + S       L +L   N          + 
Sbjct: 169 YNNQLT-----SLPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSG 222

Query: 202 LKELDLRGCGITTSQGL-ADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSL 260
           LKEL + G  +T+   L      LK L +    +T++  L     L +L +  N +   L
Sbjct: 223 LKELIVSGNRLTS---LPVLPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLT-RL 276

Query: 261 ESQGLADLPNLKILDLRDCGMTTI 284
             + L  L +   ++L    ++  
Sbjct: 277 -PESLIHLSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 7e-12
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 34/177 (19%)

Query: 123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL-ANLRYLQVLDLS 181
                +L++G +      LP       +TTL++  N++        L A    L+ L++S
Sbjct: 39  NNGNAVLNVGESGLTT--LP-DCLPAHITTLVIPDNNL------TSLPALPPELRTLEVS 89

Query: 182 WNENITS-----GSLTRLGLANL---------TNLKELDLRGCGITTSQGLADLPNLKTL 227
            N  +TS       L  L + +          + L +L + G  +T+       P L+ L
Sbjct: 90  GN-QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP--VLPPGLQEL 146

Query: 228 DLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
            + D  + ++  L     L  L    N +  SL          L+ L + D  + ++
Sbjct: 147 SVSDNQLASLPAL--PSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASL 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 44/193 (22%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
              LQ L++SDN                  +L  L    N      LP L   + L  L 
Sbjct: 140 PPGLQELSVSDNQLASLPA--------LPSELCKLWAYNNQLTS--LPML--PSGLQELS 187

Query: 155 LYSNSI----EGSGTMQGL-----------ANLRYLQVLDLSWNENITS-----GSLTRL 194
           +  N +         +  L           A    L+ L +S N  +TS       L  L
Sbjct: 188 VSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKEL 246

Query: 195 GLAN---------LTNLKELDLRGCGITT-SQGLADLPNLKTLDLRDCGITTIQGLAKLK 244
            ++           + L  L +    +T   + L  L +  T++L    ++       L+
Sbjct: 247 MVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ-ALR 305

Query: 245 NLEALDLSWNNIN 257
            + +       I 
Sbjct: 306 EITSAPGYSGPII 318

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.9 bits (176), Expect = 3e-14
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 13/200 (6%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGC--NFFNDSILPYL-NTLTSLTTLI 154
           L+ L+L ++       +       +   L  L++ C  +  + S L  L     +L +L 
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKEL-DLRGCGIT 213
           L + ++        L     L+ L            +       L+  KEL  L G    
Sbjct: 218 L-NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 214 TSQGLADL----PNLKTLDLRDCGITT---IQGLAKLKNLEALDLSWNNINGSLESQGLA 266
               L  +      L TL+L    + +   ++ L +   L+ L +     +  LE     
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 267 DLPNLKILDLRDCGMTTIQG 286
              +L+ L +       ++ 
Sbjct: 337 -CKDLRELRVFPSEPFVMEP 355

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.8 bits (168), Expect = 3e-13
 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 28/224 (12%)

Query: 68  LSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLK 127
             +    R   +     ++   ++   F +++S+ L                        
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKG--------------KPHFADFN 83

Query: 128 ILDLGC-NFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENI 186
           ++  G   +    I    ++ T L  + L    +          + +  +VL LS  E  
Sbjct: 84  LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143

Query: 187 TSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADL----PNLKTLDLRDC-GITTIQG 239
           ++  L  +  A   NLKELDLR   +   +   L+       +L +L++       +   
Sbjct: 144 STDGLAAI-AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202

Query: 240 LAKL----KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279
           L +L     NL++L L+       L +  L   P L+ L     
Sbjct: 203 LERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.7 bits (160), Expect = 3e-12
 Identities = 29/211 (13%), Positives = 64/211 (30%), Gaps = 33/211 (15%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGS-LKQLKILDL---------GCNFFNDSILPYL-NT 146
           LQ L + D       E+   +   S  K L+ L +               +  L  +   
Sbjct: 316 LQRLWVLDYI-----EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGL--------AN 198
              L +++ +   +  +  +    N   +    L   E      LT   L         +
Sbjct: 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430

Query: 199 LTNLKELDLRGCGITTSQGLADL----PNLKTLDLRDCGIT--TIQGLAK-LKNLEALDL 251
             +L+ L L G    T +    +      ++ L +   G +   +  +     +L  L++
Sbjct: 431 CKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488

Query: 252 SWNNINGSLESQGLADLPNLKILDLRDCGMT 282
                         + L  ++ L +  C ++
Sbjct: 489 RDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 37/179 (20%), Positives = 61/179 (34%), Gaps = 20/179 (11%)

Query: 122 SLKQLKILDL-GCNFFNDSILPYL-NTLTSLTTLILYSNSIEGSGTMQGLA----NLRYL 175
           S K  K+L L  C  F+   L  +  T  +L  L L  + ++   +   L+        L
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSL 186

Query: 176 QVLDLSW-NENITSGSLTRLGLANLTNLKELDLRGCGITTSQG--LADLPNLKTLDLRDC 232
             L++S     ++  +L RL +    NLK L L            L   P L+ L     
Sbjct: 187 VSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 233 GITTIQG--------LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT 283
                          L+  K L  L   W+ +   L +   +    L  L+L    + +
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQS 303

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 29/215 (13%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDS-----FGSLKQLKILDLGCNFFNDSILPYL 144
                +  L SLN+S         ++   S           LK L L      + +   L
Sbjct: 178 HFPDTYTSLVSLNISC------LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRY---LQVLDLSWNENITSGSLTRLGLANLTN 201
                L  L     + E    +    ++      ++  LS   +     L  +  +  + 
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSVCSR 290

Query: 202 LKELDLRGCGITTSQG---LADLPNLKTLDLRDC-GITTIQGLAK-LKNLEALDLSWNNI 256
           L  L+L    + +      L   P L+ L + D      ++ LA   K+L  L +  +  
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 257 NGSLESQGLAD---------LPNLKILDLRDCGMT 282
                +  L +          P L+ +      MT
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 9e-11
 Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 29/210 (13%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY- 156
           L +LNLS    +               +L+ L +     +  +    +T   L  L ++ 
Sbjct: 291 LTTLNLSYATVQ---SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 157 ----SNSIEGSGTMQGLA----NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
                     + T QGL         L+ + L +   +T+ +L  +   N  N+    L 
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIA-RNRPNMTRFRLC 405

Query: 209 GCGITTSQGLADL-------------PNLKTLDLRDC-GITTIQGLAK-LKNLEALDLSW 253
                    L                 +L+ L L         + +    K +E L +++
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 254 NNINGSLESQGLADLPNLKILDLRDCGMTT 283
              +       L+   +L+ L++RDC    
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 7/118 (5%)

Query: 122 SLKQLKILDLGCNFFNDSILPYLNT-LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDL 180
             K L+ L L      D +  Y+ T    +  L +        G    L+    L+ L++
Sbjct: 430 HCKDLRRLSL-SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488

Query: 181 SWNENITSGSLTRLGLANLTNLKELDLRGCGITTS--QGLAD-LPNLKTLDLRDCGIT 235
                     L     + L  ++ L +  C ++    + L   +P L    + + G  
Sbjct: 489 RDCPFGDKALLA--NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 25/134 (18%)

Query: 178 LDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL---------------- 221
           + +     ++  ++    +     ++ ++L+G        L                   
Sbjct: 48  VFIGNCYAVSPATV----IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 103

Query: 222 -PNLKTLDLRDCGIT--TIQGLAK-LKNLEALDLSW-NNINGSLESQGLADLPNLKILDL 276
              L+ + L+   +T   ++ +AK  KN + L LS     +    +   A   NLK LDL
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 277 RDCGMTTIQGKIFK 290
           R+  +  + G    
Sbjct: 164 RESDVDDVSGHWLS 177

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.2 bits (169), Expect = 2e-13
 Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 42/204 (20%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
             +   L L+        +N          Q+ +L++  N      LP      SL  L 
Sbjct: 58  INQFSELQLNRLNLSSLPDN-------LPPQITVLEITQNAL--ISLP--ELPASLEYLD 106

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS-----GSLTRLGLAN---------LT 200
              N +              L+ LD+  N  +T        L  +   N          T
Sbjct: 107 ACDNRLS-----TLPELPASLKHLDVDNN-QLTMLPELPALLEYINADNNQLTMLPELPT 160

Query: 201 NLKELDLRGCGITTSQGLADLP-NLKTLDLRDCGITTI-QGLAKLKNLE----ALDLSWN 254
           +L+ L +R   +T    L +LP +L+ LD+    + ++     +  + E          N
Sbjct: 161 SLEVLSVRNNQLTF---LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217

Query: 255 NINGSLESQGLADLPNLKILDLRD 278
            I   +  + +  L     + L D
Sbjct: 218 RIT-HI-PENILSLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 39/212 (18%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
             ++  L ++ N      E            L+ LD   N  +   LP      SL  L 
Sbjct: 79  PPQITVLEITQNALISLPE--------LPASLEYLDACDNRLST--LP--ELPASLKHLD 126

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS-----GSLTRLGLAN---------LT 200
           + +N +     +  L     L+ ++   N  +T       SL  L + N           
Sbjct: 127 VDNNQLTMLPELPAL-----LEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPELPE 180

Query: 201 NLKELDLRGCGITT-SQGLADLPNLKT----LDLRDCGITTI-QGLAKLKNLEALDLSWN 254
           +L+ LD+    + +         + +        R+  IT I + +  L     + L  N
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQG 286
            ++ S   + L+               +   G
Sbjct: 241 PLS-SRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 7e-12
 Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 35/213 (16%)

Query: 82  TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSF--GSLKQLKILDLGCNFFNDS 139
            + S      F  +++ +   L          N+A        + Q   L L       S
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGE-----NRNEAVSLLKECLINQFSELQLNRLNL--S 72

Query: 140 ILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL 199
            LP  N    +T L +  N++              L+ LD   N       L+ L     
Sbjct: 73  SLP-DNLPPQITVLEITQNALI-----SLPELPASLEYLDACDNR------LSTL-PELP 119

Query: 200 TNLKELDLRGCGITTSQGLADLP-NLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNING 258
            +LK LD+    +T    L +LP  L+ ++  +  +T +       +LE L +  N +  
Sbjct: 120 ASLKHLDVDNNQLTM---LPELPALLEYINADNNQLTML--PELPTSLEVLSVRNNQLTF 174

Query: 259 SLESQGLADLP-NLKILDLRDCGMTTIQGKIFK 290
                 L +LP +L+ LD+    + ++     +
Sbjct: 175 ------LPELPESLEALDVSTNLLESLPAVPVR 201

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 43/239 (17%)

Query: 84  ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY 143
            +++   L      L  +NL+                    + + L L  N         
Sbjct: 89  CTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145

Query: 144 L-----NTLTSLTTLILYSNSIEGSGTM---QGLANLRYLQVLDLSWNENITSGSLTRL- 194
           L     +    +TTL L +N +  +G     +GLA    +  L L     +    L  L 
Sbjct: 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLA 204

Query: 195 -GLANLTNLKELDLRGCGITT------SQGLADLPNLKTLDLRDCGITT------IQGLA 241
             L     L+EL++   G         ++   + P+L+ L L    +++           
Sbjct: 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGG 264

Query: 242 KLKNLEALDLSWNNING-----------------SLESQGLADLPNLKILDLRDCGMTT 283
             +    + +S                       S +   +     L + DL D    T
Sbjct: 265 AAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGAT 323

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 24/160 (15%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLA-----NLRYLQVLDLSWNENITSGSLTRLGLAN 198
              L+SL  L L    +        +A         L  ++L+    +    L  L L  
Sbjct: 68  AEVLSSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTL-LPV 124

Query: 199 LTNLKELDLRGCGITTS--QGLADL-----PNLKTLDLRDCGITTI------QGLAKLKN 245
               ++L L+   +     + L DL       + TL L +  +T        +GLA   +
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 246 LEALDLSWNNIN---GSLESQGLADLPNLKILDLRDCGMT 282
           +  L L    +      L +  L     L+ L++   G  
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 34/225 (15%), Positives = 60/225 (26%), Gaps = 45/225 (20%)

Query: 82  TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSL----KQLKILDLGCNFFN 137
            +   L   L H   ++ +L LS+N                       +  L L      
Sbjct: 141 EACKDLRDLLLHDQCQITTLRLSNNPLT----AAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 138 D----SILPYLNTLTSLTTLILYSNSIEGSGTM---QGLANLRYLQVLDLSWNENITSGS 190
           D     +   L+    L  L +  N    +  +   +       L++L L +N  ++S  
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSSEG 255

Query: 191 LTRLG-----LANLTNLKELDLRGCGIT--TSQGLADL---------------PNLKTLD 228
              L            +      G  ++   S  L+++                 L   D
Sbjct: 256 RQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRD 315

Query: 229 LRDCGITTI------QGLAKLKNLEALDLSWNNINGSLESQGLAD 267
           L D    T+      Q L     + AL     +  GS        
Sbjct: 316 LEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS-GSPSGSWSHP 359

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 16/105 (15%)

Query: 193 RLGLANLTNLKELDLRGCGITTSQG--LADL-----PNLKTLDLRDCGITT--IQGLAK- 242
           R     L++L++L+L G  +T  +   +A +       L  ++L  C +    ++ L   
Sbjct: 65  RFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124

Query: 243 LKNLEALDLSWNNINGSLESQGLADL-----PNLKILDLRDCGMT 282
                 L L  N++ G    + L DL       +  L L +  +T
Sbjct: 125 FLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQITTLRLSNNPLT 168

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 157 SNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLT-NLKELDLRGCGITT 214
           ++S   S     +  L+Y++ + L     I  G L RL  L NL  ++ E+++  CG  T
Sbjct: 69  TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128

Query: 215 SQG---LADLPNLKTLDLRDCGITTIQGLAKLKNLEAL 249
            +G   L    NLK L L D      +         +L
Sbjct: 129 DKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSL 166

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 13/99 (13%)

Query: 201 NLKELDLRGCGIT--TSQGLADLPNLKTLDLRDC------GITTIQGLAKL-KNLEALDL 251
            ++ +D     I       +  L  ++ + L  C       +  +  L  L K++  +++
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 252 SWN-NI-NGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288
               N+ +  + +  L    NLK L L D      + KI
Sbjct: 122 ISCGNVTDKGIIA--LHHFRNLKYLFLSDLPGVKEKEKI 158

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 65.0 bits (157), Expect = 4e-12
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 24/166 (14%)

Query: 136 FNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG 195
               + P L+ +  L  L +   +    G      NL+ L++     +  +    +  + 
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEI----ISGGLPDSVVEDIL 214

Query: 196 LANLTNLKELDLR--------GCGITTSQGLAD---LPNLKTLDLRDCGITT--IQGLAK 242
            ++L NL++L L            +   + L      PNLK L + D       ++   +
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274

Query: 243 ---LKNLEALDLSWNNIN---GSLESQGLADLPNLKILDLRDCGMT 282
              L  LE +D+S   +      L    +  + +LK ++++   ++
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 56.9 bits (136), Expect = 2e-09
 Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 20/211 (9%)

Query: 89  MSLFHPFEELQSLNLSDNWFR--GFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           +     F   + L   D  F        +  D    L  + +L+       +++      
Sbjct: 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP 191

Query: 147 LTSLTTLILYSNSIEGSGTMQ-GLANLRYLQVLDLSWNENITSGSLT------RLGLANL 199
             +L +L + S  +  S       ++L  L+ L L                         
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 200 TNLKELDLRGCGITTS--QGLAD---LPNLKTLDLRDCGITT------IQGLAKLKNLEA 248
            NLK L +          +   +   LP L+T+D+    +T       +  + K+K+L+ 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDC 279
           +++ +N ++  ++ +    LP    +     
Sbjct: 312 INMKYNYLSDEMKKELQKSLPMKIDVSDSQE 342

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL----PNLK 225
            NLR L+ +       ++   L RL  A   +L+ L L  C   T+ GL  +      +K
Sbjct: 109 NNLRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIK 167

Query: 226 TLDLRDCGITTI--QGLAKL----KNLEALDLSWNNINGSLESQGLADL----PNLKILD 275
           TL + +   +    + L +L     +LE L+         +  + L  +     +L  + 
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-ISPKDLETIARNCRSLVSVK 226

Query: 276 LRDCGMTTIQG 286
           + D  +  + G
Sbjct: 227 VGDFEILELVG 237

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 14/208 (6%)

Query: 82  TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141
           +   L  ++     ++L++L L      GF  +         +++K L +  + F++   
Sbjct: 125 SDLDLDRLAKAR-ADDLETLKLD--KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181

Query: 142 PYLNTL----TSLTTLILYSNSIEG---SGTMQGLANLRYLQVLDLSWNENITSGSLTRL 194
            +L+ L    TSL  L  Y                 N R L  + +   E +      + 
Sbjct: 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241

Query: 195 GLANLTNLKELDLRGCGITTSQ--GLADLPNLKTLDLRDCGITTIQGLAKL-KNLEALDL 251
             ANL       L        +   L     L  L L   G   +  L      +  LDL
Sbjct: 242 -AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300

Query: 252 SWNNINGSLESQGLADLPNLKILDLRDC 279
            +  +        +   PNL++L+ R+ 
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 41/242 (16%), Positives = 74/242 (30%), Gaps = 24/242 (9%)

Query: 68  LSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFG------ 121
             +    R +       +     L   F  L+SL L        +     +  G      
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWV 104

Query: 122 -----SLKQLKILDLGCNFFNDSILPYL--NTLTSLTTLILYSNSIEGSGTMQGLA-NLR 173
                +L+QLK +       +D  L  L       L TL L   S   +  +  +  + R
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR 164

Query: 174 YLQVLDLSWNENITSGSLTRLGLA-NLTNLKELDLRGCGIT--TSQGLADL----PNLKT 226
            ++ L +  +            LA + T+L+ L+         + + L  +     +L +
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 227 LDLRDCGITTIQGL-AKLKNLEALDLSW--NNINGSLESQGLADLPNLKILDLRDCGMTT 283
           + + D  I  + G      NLE         +I    +   L     L  L L   G   
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 284 IQ 285
           + 
Sbjct: 285 MP 286

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 14/177 (7%)

Query: 119 SFGSLKQLKILDL-GCNFFNDSILPYL-NTLTSLTTLILYSNSIEGSGTMQGLA----NL 172
           +      L+ L L  C+ F    L  +      + TL++  +S       + L     + 
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS-EKDGKWLHELAQHN 191

Query: 173 RYLQVLDLSWNE--NITSGSLTRLGLANLTNLKELDLRGCGITTSQGL-ADLPNLKTLDL 229
             L+VL+    E   I+   L  +   N  +L  + +    I    G      NL+    
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 230 RDC--GITTIQGLAKLKNLEALDLSWNNINGSLESQGLADL-PNLKILDLRDCGMTT 283
                 I   +    L     L     +  G  E   L      ++ LDL    + T
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.3 bits (133), Expect = 7e-09
 Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 33/201 (16%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDL-GCNFFNDSIL-----PYLNTLTSL 150
           EL+ + +  +               +L   +++ L       D  L       L     L
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 151 TTLILYSNSIE-GSGTMQGLA-NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
                Y          +  +      ++ + L +    +   L         NL++L++R
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEF-SRGCPNLQKLEMR 496

Query: 209 GCGITTS---QGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGL 265
           GC  +       +  LP+L+ L ++    +                    + G    Q  
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRAS--------------------MTGQDLMQMA 536

Query: 266 ADLPNLKILDLRDCGMTTIQG 286
               N++++  R       QG
Sbjct: 537 RPYWNIELIPSRRVPEVNQQG 557

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 10/130 (7%)

Query: 122 SLKQLKILDL--GCNFFNDSILPYL-NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVL 178
             K+L+            D  L Y+     ++  ++L        G M+       LQ L
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS-----QGLADLPNLKTLDLRDCG 233
           ++      +  ++    +  L +L+ L ++G   + +     Q      N++ +  R   
Sbjct: 494 EMRGC-CFSERAIAAA-VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551

Query: 234 ITTIQGLAKL 243
               QG  + 
Sbjct: 552 EVNQQGEIRE 561

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 32/138 (23%)

Query: 178 LDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGL-----------------AD 220
           + ++     T   L         NL+ L L+G        L                  +
Sbjct: 55  VTMALCYTATPDRL----SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN 110

Query: 221 LPNLKTLDLRDCGIT--TIQGLAK--LKNLEALDLSWNNINGSLESQGLADL----PNLK 272
           L  LK++  R   ++   +  LAK    +LE L L   +      + GL  +      +K
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS---GFTTDGLLSIVTHCRKIK 167

Query: 273 ILDLRDCGMTTIQGKIFK 290
            L + +   +   GK   
Sbjct: 168 TLLMEESSFSEKDGKWLH 185

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTTLIL 155
            + L+L  N            +F  L +L++L L  N      LP      L +L TL +
Sbjct: 39  TKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWV 92

Query: 156 YSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213
             N ++    G    L N   L  L L  N+ +   SL      +LT L  L L    + 
Sbjct: 93  TDNKLQALPIGVFDQLVN---LAELRLDRNQ-LK--SLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 214 T-SQGLAD-LPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSLESQGLADLP 269
           +  +G+ D L +LK L L +  +  +   A  KL  L+ L L  N +   +       L 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLE 205

Query: 270 NLKILDLRD 278
            LK+L L++
Sbjct: 206 KLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 13/149 (8%)

Query: 147 LTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
           LT L  L L  N ++   +G  + L NL  L    ++ N+ + +  L       L NL E
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETL---WVTDNK-LQA--LPIGVFDQLVNLAE 113

Query: 205 LDLRGCGITT-SQGL-ADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSL 260
           L L    + +    +   L  L  L L    + ++      KL +L+ L L  N +   +
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172

Query: 261 ESQGLADLPNLKILDLRDCGMTTIQGKIF 289
                  L  LK L L +  +  +    F
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 38/151 (25%), Positives = 55/151 (36%), Gaps = 19/151 (12%)

Query: 148 TSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRL--GL-ANLTNL 202
                L L SN +    S     L  LR    L L+ N+      L  L  G+   L NL
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRL---LYLNDNK------LQTLPAGIFKELKNL 87

Query: 203 KELDLRGCGITT-SQGLAD-LPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNING 258
           + L +    +     G+ D L NL  L L    + ++       L  L  L L +N +  
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ- 146

Query: 259 SLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           SL       L +LK L L +  +  +    F
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-NTLTSL 150
           F   + L++L ++DN  +          F  L  L  L L  N    S+ P + ++LT L
Sbjct: 81  FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKL 135

Query: 151 TTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
           T L L  N ++    G    L +   L+ L L  N  +    +       LT LK L L 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTS---LKELRLYNN-QLK--RVPEGAFDKLTELKTLKLD 189

Query: 209 GCGITTSQGLA--DLPNLKTLDLRD 231
              +      A   L  LK L L++
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQE 214

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 4e-09
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLA--DLPNL 224
             L     L  L +   +++    L    L  L  L+ L +   G+      A    P L
Sbjct: 25  HHLPGAENLTELYIENQQHLQH--LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 225 KTLDLRDCGITTIQ-GLAKLKNLEALDLSWNNIN 257
             L+L    + ++     +  +L+ L LS N ++
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 216 QGLADLPNLKTLDLRDC-GITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLK 272
             L    NL  L + +   +  ++   L  L  L  L +  + +   +        P L 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 273 ILDLRDCGMTTIQGKIFK 290
            L+L    + ++  K  +
Sbjct: 84  RLNLSFNALESLSWKTVQ 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 229 LRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288
            RD  + ++  L   +NL  L +        LE + L  L  L+ L +   G+  +    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 289 F 289
           F
Sbjct: 76  F 76

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE--NITSGSLTRLGLANLTNLKEL 205
                L L +N             L  L+ ++ S N+  +I  G+         + + E+
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----ASGVNEI 86

Query: 206 DLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQGLA--KLKNLEALDLSWNNINGSLE 261
            L    +     +    L +LKTL LR   IT +   +   L ++  L L  N I  ++ 
Sbjct: 87  LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 262 SQGLADLPNLKILDLRD 278
                 L +L  L+L  
Sbjct: 146 PGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT-SQG-LADLPNLKTLDLRDCG 233
             L L+ NE  T    T +    L  L++++     IT   +G       +  + L    
Sbjct: 35  AELRLNNNE-FTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 234 ITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           +  +Q      L++L+ L L  N I   + +     L ++++L L D  +TT+    F
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 59/207 (28%)

Query: 46  PSDCCDDWEGVKCNATTRRVMQLSLT--------YTERLNYYDRTSASLLNMSLFHPFEE 97
           P  C       +C  TT       L         YT  L   +     L    +F    +
Sbjct: 6   PEKC-------RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ 58

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
           L+ +N S+N                  ++  ++ G   F           + +  ++L S
Sbjct: 59  LRKINFSNN------------------KITDIEEGA--FEG--------ASGVNEILLTS 90

Query: 158 NSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT- 214
           N +E       +GL +L+    L L  N  IT   +       L++++ L L    ITT 
Sbjct: 91  NRLENVQHKMFKGLESLKT---LMLRSN-RIT--CVGNDSFIGLSSVRLLSLYDNQITTV 144

Query: 215 SQGLAD-LPNLKTLDLR------DCGI 234
           + G  D L +L TL+L       +C +
Sbjct: 145 APGAFDTLHSLSTLNLLANPFNCNCYL 171

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 200 TNLKELDLRGCGITTSQGLA---DLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWN 254
               EL L     T  +       LP L+ ++  +  IT I+         +  + L+ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
            +  +++ +    L +LK L LR   +T +    F
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 214 TSQGLADLP-----NLKTLDLRDCGITTIQGLA---KLKNLEALDLSWNNINGSLESQGL 265
           ++Q L  +P         L L +   T ++      KL  L  ++ S N I   +E    
Sbjct: 19  SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAF 77

Query: 266 ADLPNLKILDLRDCGMTTIQGKIFK 290
                +  + L    +  +Q K+FK
Sbjct: 78  EGASGVNEILLTSNRLENVQHKMFK 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 1e-08
 Identities = 54/388 (13%), Positives = 106/388 (27%), Gaps = 131/388 (33%)

Query: 1   MHGYKGC------LETERTALLEIKS----FFISVGDIGYDDKIL-----------PSWV 39
           + G  G       L+   +  ++ K     F++++ +    + +L           P+W 
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 40  GEDDGMPS-----------------------------DCCDDWE----GVKCN--ATTRR 64
              D   +                             +  +        + C    TTR 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 65  V------------------MQLSLTYTERLNYYDRTSASLLNMSLF---------HPF-- 95
                                ++LT  E  +         L+             +P   
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRL 330

Query: 96  ----EELQS-LNLSDNWFRGFYE--NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLT 148
               E ++  L   DNW     +      +S  SL  L+  +    F   S+ P  +   
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPP-SAHI 387

Query: 149 SLTTL-ILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS-GSLTRLGLANLTNLKELD 206
               L +++ + I+ S  M  +  L    +++    E+  S  S+       L N   L 
Sbjct: 388 PTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 207 LRGCGITTSQGLADLPNL-KTLDLRDCGITTIQG---------LAKLKNLEA-------- 248
                      + D  N+ KT D  D     +           L  +++ E         
Sbjct: 447 RS---------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 249 LDLSWNNINGSLESQGLADLPNLKILDL 276
           LD  +  +   +     A   +  IL+ 
Sbjct: 498 LDFRF--LEQKIRHDSTAWNASGSILNT 523

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT-SQGL-ADLPNLKTLDLRDCG 233
             + L  N  I    +     +    L+ +DL    I+  +      L +L +L L    
Sbjct: 35  TEIRLEQN-TIKV--IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 234 ITTIQG--LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           IT +       L +L+ L L+ N IN  L      DL NL +L L D  + TI    F
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 24/148 (16%)

Query: 99  QSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTTLILY 156
             + L  N  +         +F   K+L+ +DL  N    S L       L SL +L+LY
Sbjct: 35  TEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLY 88

Query: 157 SNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT 214
            N I        +GL +L+    L L+ N  I    L      +L NL  L L    + T
Sbjct: 89  GNKITELPKSLFEGLFSLQL---LLLNAN-KIN--CLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 215 -SQGLAD-LPNLKTLDLR------DCGI 234
            ++G    L  ++T+ L       DC +
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFICDCHL 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 147 LTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204
              L  + L +N I        QGL +L  L    L  N  IT   L +     L +L+ 
Sbjct: 55  YKKLRRIDLSNNQISELAPDAFQGLRSLNSL---VLYGN-KITE--LPKSLFEGLFSLQL 108

Query: 205 LDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWN 254
           L L    I         DL NL  L L D  + TI     + L+ ++ + L+ N
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 200 TNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNN 255
             + E+ L    I        +    L+ +DL +  I+ +       L++L +L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           I   L       L +L++L L    +  ++   F
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 51.2 bits (122), Expect = 9e-08
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 198 NLTNLKELDLRGCGITTSQGLADL----PNLKTLDLRDCGITTIQGLAKLK--NLEALDL 251
           N+  L  L+L    +     ++ +    PNLK L+L    + + + L K+K   LE L L
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 227

Query: 252 SWNNINGSLESQG------LADLPNLKILD 275
             N++  +   Q           P L  LD
Sbjct: 228 DGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 18/137 (13%)

Query: 125 QLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE 184
             + LDL     +D  L   N    L      + ++          N+  L  L+LS N 
Sbjct: 128 SQQALDL-KGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE-----NIPELLSLNLSNN- 180

Query: 185 NITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL--PNLKTLDLRDCGITTIQG--- 239
            +         +    NLK L+L G  + + + L  +    L+ L L    +        
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQS 240

Query: 240 ------LAKLKNLEALD 250
                   +   L  LD
Sbjct: 241 TYISAIRERFPKLLRLD 257

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 25/170 (14%)

Query: 119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVL 178
           +   L  +  +    +  +   +  +  L ++  L L  N +     ++ L NL Y   L
Sbjct: 36  TQNELNSIDQIIANNS--DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTY---L 90

Query: 179 DLSWNENITSGSLTRL---GLANLTNLKELDLRGCGITT-SQGLAD-LPNLKTLDLRDCG 233
            L+ N       L  L       LTNLKEL L    + +   G+ D L NL  L+L    
Sbjct: 91  ILTGN------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144

Query: 234 ITTI-QGL-AKLKNLEALDLSWNNINGSLES--QGLAD-LPNLKILDLRD 278
           + ++ +G+  KL NL  LDLS+N     L+S  +G+ D L  LK L L  
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQ----LQSLPEGVFDKLTQLKDLRLYQ 190

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 21/159 (13%), Positives = 43/159 (27%), Gaps = 23/159 (14%)

Query: 122 SLKQLKILDLGCNFFN--DSILPYLNTLTSLTTLILYS-NSIEGSGTM---QGLANLRYL 175
             K   + D   N  +  +++    N    L  + L +  +I         + L    Y+
Sbjct: 8   PTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYV 67

Query: 176 QVLDLSWNENITSGSLTRLG--LANLTNLKELDLRGCGITT------SQGLADLPNLKTL 227
           +   +             L   L     LK L++    I+        + L    +L  L
Sbjct: 68  KKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126

Query: 228 DLRDC----GITTIQGLAKL----KNLEALDLSWNNING 258
            + +     G      +A +      L      +     
Sbjct: 127 RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 15/136 (11%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQ---LKILDLGCNFFND----SILPYLNTLTSL 150
           L+ +NL++                +LK    +K   +     ND    ++   L    +L
Sbjct: 38  LEEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 151 TTLILYSNSIEGSGTM---QGLANLRYLQVLDLSWNEN-ITSGSLTRLG--LANLTNLKE 204
            +L + SN I GSG +   + L +   L  L +      + +     +   L   T L +
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 205 LDLRGCGITTSQGLAD 220
                         ++
Sbjct: 156 FGYHFTQQGPRLRASN 171

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 12/103 (11%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 169 LANLRYLQVLDLSWNENITSGSLTRL--GLANLTNLKELDLRGCGIT--TSQGLADL--- 221
             +   L+ ++++  + ++   +  L     N  ++++  L    I+   ++GL +L   
Sbjct: 37  REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET 96

Query: 222 -PNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNIN 257
            P+L+ L++    +T       ++     +++          +
Sbjct: 97  SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 71  TYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD 130
            +T  L   D     + +  LF     L  L L  N   G  E  A++       ++ L 
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFE---GASHIQELQ 84

Query: 131 LGCNFFNDSILPY--LNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWN 183
           LG N      +       L  L TL LY N I     G+ + L +L  L +    +N
Sbjct: 85  LGENKI--KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 17/168 (10%)

Query: 127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNE 184
           + LDL               LT LT L L  N ++   +G    L     L  L L+ N+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE---LGTLGLANNQ 94

Query: 185 NITSGSLTRLGLANLTNLKELDLRGCGITT-SQGLAD-LPNLKTLDLRDCGITTIQGLA- 241
            +   SL      +LT L +L L G  + +   G+ D L  LK L L    + +I   A 
Sbjct: 95  -LA--SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151

Query: 242 -KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR----DCGMTTI 284
            KL NL+ L LS N +  S+       L  L+ + L     DC    I
Sbjct: 152 DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 53/191 (27%), Positives = 73/191 (38%), Gaps = 47/191 (24%)

Query: 73  TERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLG 132
           TE+L     T  + L+ + F    +L  LNL  N                  QL+ L  G
Sbjct: 37  TEKL-DLQSTGLATLSDATFRGLTKLTWLNLDYN------------------QLQTLSAG 77

Query: 133 CNFFNDSILPYLNTLTSLTTLILYSNSIEG--SGTMQGLANLRYLQVLDLSWNENITS-- 188
              F+D        LT L TL L +N +     G    L     L  L L  N+ + S  
Sbjct: 78  V--FDD--------LTELGTLGLANNQLASLPLGVFDHLTQ---LDKLYLGGNQ-LKSLP 123

Query: 189 -GSLTRLGLANLTNLKELDLRGCGITT-SQGLAD-LPNLKTLDLRDCGITTIQGLA--KL 243
            G   R     LT LKEL L    + +   G  D L NL+TL L    + ++   A  +L
Sbjct: 124 SGVFDR-----LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178

Query: 244 KNLEALDLSWN 254
             L+ + L  N
Sbjct: 179 GKLQTITLFGN 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.28

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2e-37  Score=263.65  Aligned_cols=260  Identities=24%  Similarity=0.339  Sum_probs=189.1

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCC--CCceEecccc--CcEEeecccccccccc--
Q 022897            5 KGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDD--WEGVKCNATT--RRVMQLSLTYTERLNY--   78 (290)
Q Consensus         5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~--w~gv~c~~~~--~~v~~l~l~~~~~l~~--   78 (290)
                      +.|.++|++||++||+++.+  +     ..+.+|..     +.+|| .  |.||.|+...  ++|+.++++++. +..  
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~--~-----~~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~   66 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGN--P-----TTLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPY   66 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTC--C-----GGGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCC-CSSCE
T ss_pred             CCCCHHHHHHHHHHHHhcCC--c-----ccccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCC-ccCCc
Confidence            46999999999999999976  4     26899986     56788 6  9999997544  789999999876 111  


Q ss_pred             --------------ccc---ccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch
Q 022897           79 --------------YDR---TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL  141 (290)
Q Consensus        79 --------------l~~---~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  141 (290)
                                    ++.   ..+....+..++.+++|++|++++|.+.+..+.    .|..+++|++|++++|.+.+.+|
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p  142 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCC
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCC
Confidence                          000   111112233455666666666666666655554    56667777777777777766666


Q ss_pred             hhccCCCCCCEEEccCCCCCCCcchhhcccCC-CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCC
Q 022897          142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLR-YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGL  218 (290)
Q Consensus       142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~  218 (290)
                      ..+..+++|++|++++|.+++..+ ..+..++ +|++|++++|.+  .+.++. .+..++ |++|++++|.++  .+..+
T Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l--~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~  217 (313)
T 1ogq_A          143 PSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRL--TGKIPP-TFANLN-LAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEE--EEECCG-GGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred             hHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCee--eccCCh-HHhCCc-ccEEECcCCcccCcCCHHH
Confidence            667777777777777777765444 3556665 677777777765  444554 566665 778888887776  56677


Q ss_pred             CCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897          219 ADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       219 ~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~  288 (290)
                      ..+++|++|++++|.+++ ++.+..+++|++|++++|.+++.+|.. +..+++|++|+|++|+++|.+|..
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECCCS
T ss_pred             hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCCCC
Confidence            888899999999998887 566788889999999999998888877 888999999999999999888864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.4e-33  Score=262.37  Aligned_cols=261  Identities=24%  Similarity=0.300  Sum_probs=199.3

Q ss_pred             CccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEeccccCcEEeecccccccccc---cc
Q 022897            4 YKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNY---YD   80 (290)
Q Consensus         4 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~---l~   80 (290)
                      .+.+.++|++||++||+++.+  |    . .+++|..     +.+|| .|.||.|+  .++|+.++|++..-...   +.
T Consensus         6 ~~~~~~~~~~all~~k~~~~~--~----~-~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~   70 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPD--K----N-LLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSSKPLNVGFSAVS   70 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSC--T----T-SSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTTSCCCEEHHHHH
T ss_pred             cccCCHHHHHHHHHHHhhCCC--c----c-cccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCCCCcCCccCccC
Confidence            445788999999999999986  4    4 7899985     67888 99999997  68999999998651110   00


Q ss_pred             -------------cccccc-cCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhc-c
Q 022897           81 -------------RTSASL-LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-N  145 (290)
Q Consensus        81 -------------~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~  145 (290)
                                   ....+. ..+..++.+++|++|++++|.+.+.++..  ..++.+++|++|++++|.+.+..|..+ .
T Consensus        71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred             hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence                         000001 01245778888999999998888755531  156788889999999988887777665 6


Q ss_pred             CCCCCCEEEccCCCCCCCcchh--hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCC
Q 022897          146 TLTSLTTLILYSNSIEGSGTMQ--GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLP  222 (290)
Q Consensus       146 ~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~  222 (290)
                      ++++|++|++++|.+++..+..  .+..+++|++|++++|.+  .+..+   +..+++|++|++++|.++ ..+.+..++
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~l~~l~  223 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--SGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCS  223 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE--ESCCB---CTTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc--cccCC---cccCCcCCEEECcCCcCCCCCcccccCC
Confidence            7889999999999887654431  167888899999998887  44333   377888999999999887 344488899


Q ss_pred             CCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          223 NLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       223 ~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      +|++|++++|.+++  +..+..+++|++|++++|.+++.+|..   .+++|++|++++|++++.+|..+
T Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~  289 (768)
T 3rgz_A          224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL  289 (768)
T ss_dssp             SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCS
T ss_pred             CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHH
Confidence            99999999999987  677888999999999999988777653   78899999999999998777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=3.5e-33  Score=238.90  Aligned_cols=256  Identities=21%  Similarity=0.249  Sum_probs=212.6

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEecc--------ccCcEEeecccccccc
Q 022897            5 KGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA--------TTRRVMQLSLTYTERL   76 (290)
Q Consensus         5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~--------~~~~v~~l~l~~~~~l   76 (290)
                      .++..+|++||++||..+..  +.   ..+..+|.... .+..++| .|.|+.|..        ...+++.++++++.  
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~--~~---~~~~~~w~~~~-~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~--   92 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNA--DR---NRWHSAWRQAN-SNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVP--   92 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHH--CC---TTHHHHHHHHT-TTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSC--
T ss_pred             cccCchHHHHHHHHHHhccC--Cc---hhhhhhhcccc-ccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCC--
Confidence            34677899999999999865  32   45678884211 1256677 899999952        34678889998877  


Q ss_pred             cccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEcc
Q 022897           77 NYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY  156 (290)
Q Consensus        77 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  156 (290)
                             +..++ ..+..+++|++|++++|.+. .+|.    .+..+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus        93 -------l~~lp-~~l~~l~~L~~L~L~~n~l~-~lp~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           93 -------LPQFP-DQAFRLSHLQHMTIDAAGLM-ELPD----TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             -------CSSCC-SCGGGGTTCSEEEEESSCCC-CCCS----CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             -------chhcC-hhhhhCCCCCEEECCCCCcc-chhH----HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence                   22333 34666999999999999998 4554    7888999999999999998 788899999999999999


Q ss_pred             CCCCCCCcchhhc---------ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcE
Q 022897          157 SNSIEGSGTMQGL---------ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKT  226 (290)
Q Consensus       157 ~n~~~~~~~~~~~---------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~  226 (290)
                      +|.+.+..+. .+         ..+++|++|++++|.+  . .+|. .+..+++|++|++++|.++ .+..+..+++|++
T Consensus       159 ~n~~~~~~p~-~~~~~~~~~~~~~l~~L~~L~L~~n~l--~-~lp~-~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          159 ACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWTGI--R-SLPA-SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE  233 (328)
T ss_dssp             EETTCCCCCS-CSEEEC-CCCEEESTTCCEEEEEEECC--C-CCCG-GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred             CCCCccccCh-hHhhccchhhhccCCCCCEEECcCCCc--C-cchH-hhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence            9988876654 33         3589999999999986  3 6776 7899999999999999998 7778899999999


Q ss_pred             EEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          227 LDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       227 L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      |++++|.+.+  +..+..+++|++|++++|.+.+.+|.. +..+++|++|+|++|++.+.+|+.|
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhccHHH
Confidence            9999999887  677899999999999999999899988 8999999999999999999998765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=5.4e-32  Score=250.86  Aligned_cols=259  Identities=17%  Similarity=0.179  Sum_probs=164.2

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCCC---CCCCCCCcCCCCCCCCCCCCCC---CceEeccccCcEEeeccccccccccc
Q 022897            6 GCLETERTALLEIKSFFISVGDIGYD---DKILPSWVGEDDGMPSDCCDDW---EGVKCNATTRRVMQLSLTYTERLNYY   79 (290)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~~~~~~~---~~~~~~W~~~~~~~~~~~c~~w---~gv~c~~~~~~v~~l~l~~~~~l~~l   79 (290)
                      +....|++||.+|+.++.+.. +.+.   .....+|..     ..++| .|   .||.|+. .++|+.++|+++.    +
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~-w~~~~~~~~~~~~W~~-----~~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~----l   93 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKN-WSQQGFGTQPGANWNF-----NKELD-MWGAQPGVSLNS-NGRVTGLSLEGFG----A   93 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGG-CCCCC------CCCCC-----SSCGG-GTTCCTTEEECT-TCCEEEEECTTSC----C
T ss_pred             hhHHHHHHHHHHHHHHcCCCC-cccCCcCCccCCCCCC-----CCCcc-cccCCCCeEEcC-CCCEEEEEecCcc----c
Confidence            345579999999999998721 1111   112348986     67888 99   9999986 4899999999887    2


Q ss_pred             ccccccccCCCcCCCCCCCcEEECCCCcc------cC-------------------------------------------
Q 022897           80 DRTSASLLNMSLFHPFEELQSLNLSDNWF------RG-------------------------------------------  110 (290)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l------~~-------------------------------------------  110 (290)
                          .+.+ +..++++++|+.|++++|.+      .+                                           
T Consensus        94 ----~g~l-p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~  168 (636)
T 4eco_A           94 ----SGRV-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS  168 (636)
T ss_dssp             ----EEEE-CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHH
T ss_pred             ----CCcC-ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhc
Confidence                1122 34567777777777777743      11                                           


Q ss_pred             -------------------------ccchhhhhhcCCCCCCcEEECCCCcCCCC-----------------chhhcc--C
Q 022897          111 -------------------------FYENKAYDSFGSLKQLKILDLGCNFFNDS-----------------ILPYLN--T  146 (290)
Q Consensus       111 -------------------------~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~l~--~  146 (290)
                                               ... .++..++++++|++|++++|.+++.                 +|..++  +
T Consensus       169 ~l~~~~~~~~~~~~l~~l~l~~~~n~l~-~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~  247 (636)
T 4eco_A          169 DPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN  247 (636)
T ss_dssp             CTTSCCCCCCCCCCCCTTTTTCCSCEEE-EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred             CccccccccccccchhhhhhccccCCCc-cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc
Confidence                                     000 0223566777777777777777764                 677777  7


Q ss_pred             CCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCC-CCCCC-ccchhhhccC------CCccEEEcCCCCCC-CCc-
Q 022897          147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE-NITSG-SLTRLGLANL------TNLKELDLRGCGIT-TSQ-  216 (290)
Q Consensus       147 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~~~~~------~~L~~L~l~~n~l~-~~~-  216 (290)
                      +++|++|++++|.+.+.++ ..+..+++|++|++++|. +  .+ .+|. .+..+      ++|++|++++|.++ +|. 
T Consensus       248 l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l--~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~  323 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGI--SGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVE  323 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTS--CHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred             cCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCC--ccccchH-HHHhhhccccCCCCCEEECCCCcCCccCch
Confidence            7777777777777776655 467777777777777776 5  44 4555 45444      67777777777766 555 


Q ss_pred             -CCCCCCCCcEEEccCCCCCC-ccccc-----------------------cCCC-CCEEeCCCCCCCCcccccccCCCC-
Q 022897          217 -GLADLPNLKTLDLRDCGITT-IQGLA-----------------------KLKN-LEALDLSWNNINGSLESQGLADLP-  269 (290)
Q Consensus       217 -~~~~l~~L~~L~l~~n~l~~-~~~l~-----------------------~~~~-L~~L~l~~n~l~~~i~~~~l~~l~-  269 (290)
                       .+..+++|++|++++|.+++ .+.+.                       .+++ |++|++++|.++ .+|.. +..++ 
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l  401 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSV  401 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCS
T ss_pred             hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-hhhccc
Confidence             56667777777777776663 22444                       4444 555555555555 45543 33332 


Q ss_pred             -CCCEEecCCCCCccccccc
Q 022897          270 -NLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       270 -~L~~L~L~~n~l~~~~~~~  288 (290)
                       +|++|++++|++++.+|..
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCS
T ss_pred             CccCEEECcCCcCCCcchhh
Confidence             5556666666665555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=2.1e-31  Score=252.35  Aligned_cols=250  Identities=18%  Similarity=0.186  Sum_probs=145.6

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCC--CCCC------------CceEeccccCcEEeecc
Q 022897            5 KGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDC--CDDW------------EGVKCNATTRRVMQLSL   70 (290)
Q Consensus         5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--c~~w------------~gv~c~~~~~~v~~l~l   70 (290)
                      +++..+|++||++||+++.+  +         +|.....+...++  | .|            .||.|+. .++|+.++|
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~--~---------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~L  330 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDG--K---------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSL  330 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTG--G---------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEEC
T ss_pred             cccchHHHHHHHHHHHHcCC--C---------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEEC
Confidence            45677899999999999976  2         5654211111233  7 99            9999986 689999999


Q ss_pred             cccccccccccccccccCCCcCCCCCCCcEEEC-CCCcccCccchh----------------------------------
Q 022897           71 TYTERLNYYDRTSASLLNMSLFHPFEELQSLNL-SDNWFRGFYENK----------------------------------  115 (290)
Q Consensus        71 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~----------------------------------  115 (290)
                      +++.    +    .+.+ +..++++++|+.|+| ++|.+.|..+-.                                  
T Consensus       331 s~~~----L----~G~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          331 AGFG----A----KGRV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             TTTC----C----EEEE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             ccCC----C----CCcC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            9887    1    0112 244566666666666 555443320000                                  


Q ss_pred             --------------------------------------hhhhcCCCCCCcEEECCCCcCCC-----------------Cc
Q 022897          116 --------------------------------------AYDSFGSLKQLKILDLGCNFFND-----------------SI  140 (290)
Q Consensus       116 --------------------------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~  140 (290)
                                                            ++..|+++++|++|+|++|.+++                 .+
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                                  22245566666666666666665                 25


Q ss_pred             hhhcc--CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCC-CCCCC-ccchhhhccC-------CCccEEEcCC
Q 022897          141 LPYLN--TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE-NITSG-SLTRLGLANL-------TNLKELDLRG  209 (290)
Q Consensus       141 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~~~~~-------~~L~~L~l~~  209 (290)
                      |..++  ++++|++|++++|.+.+.++ ..+..+++|++|++++|. +  .+ .+|. .+..+       ++|++|++++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~l--sg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGI--SAAQLKA-DWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTS--CHHHHHH-HHHHHHHCTTTTTTCCEEECCS
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCc--ccccchH-HHHhhhhcccccCCccEEEeeC
Confidence            55555  66666666666666665544 356666666666666665 4  33 3443 33332       2566666666


Q ss_pred             CCCC-CCc--CCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCC-CCEEecCCCCCc
Q 022897          210 CGIT-TSQ--GLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN-LKILDLRDCGMT  282 (290)
Q Consensus       210 n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~-L~~L~L~~n~l~  282 (290)
                      |.++ +|.  .+..+++|++|++++|.++..+.+..+++|+.|++++|.++ .+|.. +..+++ |++|+|++|+++
T Consensus       558 N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCC
T ss_pred             CcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHH-HhhccccCCEEECcCCCCC
Confidence            6555 444  45555556666666555555335555555555555555555 45544 444554 555555555555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=6.2e-27  Score=208.03  Aligned_cols=237  Identities=23%  Similarity=0.323  Sum_probs=188.0

Q ss_pred             CCCCC-CC-CCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCC
Q 022897           45 MPSDC-CD-DWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS  122 (290)
Q Consensus        45 ~~~~~-c~-~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  122 (290)
                      |+..| |. .|..|.|........+-.+........+....+..+.+..+..+++|++|+|++|.+....+.    .|..
T Consensus        35 Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~  110 (440)
T 3zyj_A           35 CPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNG  110 (440)
T ss_dssp             CCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG----GGTT
T ss_pred             CCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh----hccC
Confidence            66666 52 367899964322222222222111122333345566667789999999999999999887766    8899


Q ss_pred             CCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCc
Q 022897          123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL  202 (290)
Q Consensus       123 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  202 (290)
                      +++|++|+|++|.++...+..|..+++|++|++++|.++. ++...+..+++|++|++++|..  .+.++...+..+++|
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L  187 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNL  187 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSC
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCC--cceeCcchhhccccc
Confidence            9999999999999997777789999999999999999985 3445788999999999999765  566776678899999


Q ss_pred             cEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCC
Q 022897          203 KELDLRGCGITTSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG  280 (290)
Q Consensus       203 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~  280 (290)
                      ++|++++|.++..+.+..+++|++|++++|.+++  +..+..+++|+.|++++|.+++ ++...+..+++|++|+|++|+
T Consensus       188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSC
T ss_pred             CeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCC
Confidence            9999999999955568899999999999999998  5678899999999999999984 544448899999999999999


Q ss_pred             CcccccccC
Q 022897          281 MTTIQGKIF  289 (290)
Q Consensus       281 l~~~~~~~f  289 (290)
                      +++++++.|
T Consensus       267 l~~~~~~~~  275 (440)
T 3zyj_A          267 LTLLPHDLF  275 (440)
T ss_dssp             CCCCCTTTT
T ss_pred             CCccChhHh
Confidence            999988776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=202.57  Aligned_cols=227  Identities=23%  Similarity=0.295  Sum_probs=142.4

Q ss_pred             CCCCCCCCCCceEecccc---------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCcc--c
Q 022897           45 MPSDCCDDWEGVKCNATT---------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFY--E  113 (290)
Q Consensus        45 ~~~~~c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~  113 (290)
                      |+..|.+.|.++.|....         ..++.++++++.         +..++...+..+++|++|++++|.+....  +
T Consensus         1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~---------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   71 (306)
T 2z66_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNK---------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS   71 (306)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred             CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCc---------cCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence            455662399999997532         134444554443         44555666888999999999999887442  2


Q ss_pred             hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccch
Q 022897          114 NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTR  193 (290)
Q Consensus       114 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  193 (290)
                      .    .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++......+..+++|++|++++|.+  .+..+.
T Consensus        72 ~----~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~  144 (306)
T 2z66_A           72 Q----SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNG  144 (306)
T ss_dssp             H----HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC--EECSTT
T ss_pred             c----ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC--Cccchh
Confidence            2    4455777777777777766 35555667777777777777766543323566667777777777664  222222


Q ss_pred             hhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCC
Q 022897          194 LGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADL  268 (290)
Q Consensus       194 ~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l  268 (290)
                       .+..+++|++|++++|.++   .+..+..+++|++|++++|.+++  +..+..+++|++|++++|.+++ ++...+..+
T Consensus       145 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l  222 (306)
T 2z66_A          145 -IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL  222 (306)
T ss_dssp             -TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTC
T ss_pred             -hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCc
Confidence             4566666666666666664   35556666666666666666665  3455666666666666666663 333335666


Q ss_pred             CCCCEEecCCCCCcccccccC
Q 022897          269 PNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       269 ~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++|++|+|++|++++.+|..|
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSC
T ss_pred             ccCCEeECCCCCCcccCHHHH
Confidence            666666666666666655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=7.1e-27  Score=208.33  Aligned_cols=229  Identities=22%  Similarity=0.297  Sum_probs=189.2

Q ss_pred             CCCCC-CC-CCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccc
Q 022897           45 MPSDC-CD-DWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYE  113 (290)
Q Consensus        45 ~~~~~-c~-~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  113 (290)
                      |+..| |. .|..|.|.....         .++.++++++.         +..+.+..|..+++|++|++++|.+.+..+
T Consensus        46 Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  116 (452)
T 3zyi_A           46 CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENN---------IQMIQADTFRHLHHLEVLQLGRNSIRQIEV  116 (452)
T ss_dssp             CCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCc---------CceECHHHcCCCCCCCEEECCCCccCCcCh
Confidence            66666 41 357899964321         33444444433         455666778999999999999999998877


Q ss_pred             hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccch
Q 022897          114 NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTR  193 (290)
Q Consensus       114 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  193 (290)
                      .    .|..+++|++|+|++|.++...+..|..+++|++|++++|.++. ++...+..+++|++|++++|..  .+.++.
T Consensus       117 ~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~--l~~i~~  189 (452)
T 3zyi_A          117 G----AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKK--LEYISE  189 (452)
T ss_dssp             T----TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTT--CCEECT
T ss_pred             h----hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCC--ccccCh
Confidence            6    88999999999999999997777778999999999999999985 4445788999999999999765  667776


Q ss_pred             hhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCC
Q 022897          194 LGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL  271 (290)
Q Consensus       194 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L  271 (290)
                      ..+..+++|++|++++|.++..+.+..+++|++|++++|.+++  +..+..+++|+.|++++|.+++..+. .+..+++|
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L  268 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASL  268 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTC
T ss_pred             hhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-HhcCCCCC
Confidence            6788999999999999999955678899999999999999998  66789999999999999999854444 48999999


Q ss_pred             CEEecCCCCCcccccccCC
Q 022897          272 KILDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       272 ~~L~L~~n~l~~~~~~~f~  290 (290)
                      ++|+|++|++++.+++.|.
T Consensus       269 ~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          269 VELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             CEEECCSSCCSCCCTTSST
T ss_pred             CEEECCCCcCCccChHHhc
Confidence            9999999999999887763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3e-26  Score=192.15  Aligned_cols=195  Identities=26%  Similarity=0.237  Sum_probs=166.6

Q ss_pred             cccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCCCchhhccCCCCCCEEEccCCCCC
Q 022897           83 SASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FNDSILPYLNTLTSLTTLILYSNSIE  161 (290)
Q Consensus        83 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~  161 (290)
                      .+..+.+..+..+++|++|++++|.+.+..+.    .|..+++|++|++++|. +....+..+..+++|++|++++|.++
T Consensus        43 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~  118 (285)
T 1ozn_A           43 RISHVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             cCCccCHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence            34555666788999999999999999887666    78999999999999997 77666888999999999999999998


Q ss_pred             CCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--c
Q 022897          162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--I  237 (290)
Q Consensus       162 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~  237 (290)
                      +.. +..+..+++|++|++++|.+   ..++...+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +
T Consensus       119 ~~~-~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          119 ELG-PGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             CCC-TTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             EEC-HhHhhCCcCCCEEECCCCcc---cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence            653 45788999999999999996   3455446889999999999999998  34468899999999999999998  6


Q ss_pred             cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          238 QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       238 ~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      ..+..+++|+.|++++|.+++ ++...+..+++|++|++++|++....+
T Consensus       195 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          195 HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCC
Confidence            778999999999999999995 554448999999999999999876443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=6.6e-26  Score=188.59  Aligned_cols=215  Identities=21%  Similarity=0.268  Sum_probs=176.1

Q ss_pred             CCCCCCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCc
Q 022897           48 DCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLK  127 (290)
Q Consensus        48 ~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~  127 (290)
                      ++| .|.|+.|.. ...++.+++++..         +..++.. +  .+++++|++++|.+....+.    .|..+++|+
T Consensus         3 ~~C-~~~~~~C~c-~~~~~~l~~~~~~---------l~~ip~~-~--~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~   64 (270)
T 2o6q_A            3 ALC-KKDGGVCSC-NNNKNSVDCSSKK---------LTAIPSN-I--PADTKKLDLQSNKLSSLPSK----AFHRLTKLR   64 (270)
T ss_dssp             CCB-GGGTCSBEE-ETTTTEEECTTSC---------CSSCCSC-C--CTTCSEEECCSSCCSCCCTT----SSSSCTTCC
T ss_pred             ccC-CCCCCCCEe-CCCCCEEEccCCC---------CCccCCC-C--CCCCCEEECcCCCCCeeCHH----HhcCCCCCC
Confidence            578 899999864 2345567777765         2222222 1  25799999999999987766    789999999


Q ss_pred             EEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEc
Q 022897          128 ILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL  207 (290)
Q Consensus       128 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l  207 (290)
                      +|++++|.++...+..|..+++|++|++++|.+++. ++..+..+++|++|++++|.+  . .++...+..+++|++|++
T Consensus        65 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           65 LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQL--K-SLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             EEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCC--C-CCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCcc--C-eeCHHHhCcCcCCCEEEC
Confidence            999999999876666778899999999999999864 445788999999999999996  3 345446889999999999


Q ss_pred             CCCCCC-C-CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897          208 RGCGIT-T-SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       208 ~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      ++|.++ . +..+..+++|++|++++|.+++  +..+..+++|++|++++|.++ .+|...+..+++|+.|+|++|++..
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeC
Confidence            999998 3 3457899999999999999998  345888999999999999999 5666658899999999999999876


Q ss_pred             cc
Q 022897          284 IQ  285 (290)
Q Consensus       284 ~~  285 (290)
                      ..
T Consensus       220 ~c  221 (270)
T 2o6q_A          220 TC  221 (270)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=4.9e-26  Score=215.29  Aligned_cols=188  Identities=23%  Similarity=0.306  Sum_probs=115.7

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      +..+++|++|++++|.+.+..+.    .+..+++|++|++++|.+++.+|..++.+++|++|++++|.+++..+ ..+..
T Consensus       462 ~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~  536 (768)
T 3rgz_A          462 LMYVKTLETLILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP-AELGD  536 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGG
T ss_pred             HcCCCCceEEEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC-HHHcC
Confidence            44445555555555555554444    45555566666666666655555555556666666666666554433 35556


Q ss_pred             CCCCCeeeCCCCCCCCCCccchh---------------------------------------------------------
Q 022897          172 LRYLQVLDLSWNENITSGSLTRL---------------------------------------------------------  194 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~---------------------------------------------------------  194 (290)
                      +++|++|++++|.+  .+.+|..                                                         
T Consensus       537 l~~L~~L~Ls~N~l--~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (768)
T 3rgz_A          537 CRSLIWLDLNTNLF--NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN  614 (768)
T ss_dssp             CTTCCEEECCSSEE--ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred             CCCCCEEECCCCcc--CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence            66666666666655  3333321                                                         


Q ss_pred             ------------hhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCC
Q 022897          195 ------------GLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNING  258 (290)
Q Consensus       195 ------------~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~  258 (290)
                                  .+..+++|++|++++|+++  +|..+..+++|+.|++++|.+++  |..++.+++|+.|||++|.++|
T Consensus       615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence                        1222355666777777666  56666777777777777777776  6667777777777777777777


Q ss_pred             cccccccCCCCCCCEEecCCCCCcccccc
Q 022897          259 SLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       259 ~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      .+|.. +..+++|++|+|++|+++|.+|+
T Consensus       695 ~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          695 RIPQA-MSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCCGG-GGGCCCCSEEECCSSEEEEECCS
T ss_pred             cCChH-HhCCCCCCEEECcCCcccccCCC
Confidence            77766 67777777777777777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.1e-26  Score=197.78  Aligned_cols=223  Identities=25%  Similarity=0.334  Sum_probs=161.6

Q ss_pred             CCCCCCCCCceEeccccC-----------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccch
Q 022897           46 PSDCCDDWEGVKCNATTR-----------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN  114 (290)
Q Consensus        46 ~~~~c~~w~gv~c~~~~~-----------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  114 (290)
                      ....| .|.++ |+....           .++.++++++.         +..++...+..+++|++|++++|.+++..+.
T Consensus        26 ~~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (353)
T 2z80_A           26 ASLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR---------ITYISNSDLQRCVNLQALVLTSNGINTIEED   94 (353)
T ss_dssp             -CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCc---------CcccCHHHhccCCCCCEEECCCCccCccCHh
Confidence            34456 89987 653222           34444444443         4455556788999999999999999887766


Q ss_pred             hhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchh
Q 022897          115 KAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL  194 (290)
Q Consensus       115 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  194 (290)
                          .|..+++|++|++++|.+++..+..+..+++|++|++++|.++.......+..+++|++|++++|..  .+.++..
T Consensus        95 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~  168 (353)
T 2z80_A           95 ----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--FTKIQRK  168 (353)
T ss_dssp             ----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTT
T ss_pred             ----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc--ccccCHH
Confidence                7889999999999999998766666889999999999999988532214688899999999999854  4455554


Q ss_pred             hhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-cc---------------------------------
Q 022897          195 GLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQ---------------------------------  238 (290)
Q Consensus       195 ~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~---------------------------------  238 (290)
                      .+..+++|++|++++|.++  .+..+..+++|++|++++|.++. +.                                 
T Consensus       169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~  248 (353)
T 2z80_A          169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN  248 (353)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred             HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccccc
Confidence            7888899999999999887  56777777777777776666554 11                                 


Q ss_pred             -----------------------ccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          239 -----------------------GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       239 -----------------------~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                                             .+..+++|+.|++++|.++ .+|...+..+++|++|+|++|++++..|
T Consensus       249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                                   1334556777777777766 5666545667777777777777766554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=5.5e-25  Score=196.12  Aligned_cols=93  Identities=29%  Similarity=0.394  Sum_probs=55.1

Q ss_pred             CCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh--ccCCCCCCEEEccCCCCCCCcch
Q 022897           89 MSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTTLILYSNSIEGSGTM  166 (290)
Q Consensus        89 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~  166 (290)
                      +..+..+++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..+..  +..+++|++|++++|.+++..+.
T Consensus        72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (455)
T 3v47_A           72 NNTFRGLSSLIILKLDYNQFLQLETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA  147 (455)
T ss_dssp             TTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred             cccccccccCCEEeCCCCccCccChh----hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence            44566667777777777776665554    5566666666666666665544433  55566666666666666554333


Q ss_pred             hhcccCCCCCeeeCCCCCC
Q 022897          167 QGLANLRYLQVLDLSWNEN  185 (290)
Q Consensus       167 ~~~~~l~~L~~L~l~~n~~  185 (290)
                      ..+..+++|++|++++|.+
T Consensus       148 ~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          148 SFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             GGGGGCTTCCEEECTTCCB
T ss_pred             cccCCCCcccEEeCCCCcc
Confidence            2355555666666655554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.3e-25  Score=205.20  Aligned_cols=192  Identities=20%  Similarity=0.229  Sum_probs=104.6

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (290)
                      +..++...+..+++|++|++++|.+.+..+.    .|..+++|++|+|++|.+++..|..|+.+++|++|++++|.+++ 
T Consensus        63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-  137 (597)
T 3oja_B           63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-  137 (597)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             CCCcCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-
Confidence            4444555556666677777777666665554    56666666666666666666555566666666666666666653 


Q ss_pred             cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CC-cCCC----------------------
Q 022897          164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TS-QGLA----------------------  219 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~-~~~~----------------------  219 (290)
                      .++..+..+++|++|++++|.+  .+ +++..+..+++|++|++++|.++ .+ ..+.                      
T Consensus       138 l~~~~~~~l~~L~~L~Ls~N~l--~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~  214 (597)
T 3oja_B          138 LPRGIFHNTPKLTTLSMSNNNL--ER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE  214 (597)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCC--CB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCS
T ss_pred             CCHHHhccCCCCCEEEeeCCcC--CC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhh
Confidence            2333456666666666666664  22 22224555666666666665554 10 0000                      


Q ss_pred             ---------------CCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          220 ---------------DLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       220 ---------------~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                                     ..++|+.|++++|.+++++.+..+++|+.|+|++|.+++.+|.. +..+++|++|+|++|.++++
T Consensus       215 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~l  293 (597)
T 3oja_B          215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVAL  293 (597)
T ss_dssp             EEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECTTSCCCEE
T ss_pred             eeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHH-hcCccCCCEEECCCCCCCCC
Confidence                           01234444444444444444555555555555555555333333 45555555555555555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=1.1e-24  Score=186.30  Aligned_cols=225  Identities=24%  Similarity=0.298  Sum_probs=148.4

Q ss_pred             CCCCCCCCCCceEecccc---------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchh
Q 022897           45 MPSDCCDDWEGVKCNATT---------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENK  115 (290)
Q Consensus        45 ~~~~~c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  115 (290)
                      |+..|.+.|..+.|....         ..++.++++++.         +..+....+..+++|++|++++|.+.+..+. 
T Consensus        25 cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   94 (330)
T 1xku_A           25 CPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNK---------ITEIKDGDFKNLKNLHTLILINNKISKISPG-   94 (330)
T ss_dssp             CCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-
T ss_pred             CCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCc---------CCEeChhhhccCCCCCEEECCCCcCCeeCHH-
Confidence            565563389999996422         123344444433         4445555688888999999999988877666 


Q ss_pred             hhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhh
Q 022897          116 AYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG  195 (290)
Q Consensus       116 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  195 (290)
                         .|..+++|++|++++|.++. +|..+.  ++|++|++++|.+++. ++..+..+++|++|++++|.+...+..+. .
T Consensus        95 ---~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~  166 (330)
T 1xku_A           95 ---AFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENG-A  166 (330)
T ss_dssp             ---TTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTT-G
T ss_pred             ---HhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChh-h
Confidence               77888888888888887763 333322  4555555555555432 22334444555555555444321111111 2


Q ss_pred             hccC---------------------CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEe
Q 022897          196 LANL---------------------TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALD  250 (290)
Q Consensus       196 ~~~~---------------------~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~  250 (290)
                      +..+                     ++|++|++++|.++  .+..+..+++|++|++++|.+++  +..+..+++|++|+
T Consensus       167 ~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  246 (330)
T 1xku_A          167 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  246 (330)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence            3333                     45666666666666  35667788888888888888887  34678888899999


Q ss_pred             CCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          251 LSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       251 l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      +++|.++ .+|.. +..+++|++|++++|+++++++..|
T Consensus       247 L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          247 LNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChhhc
Confidence            9999888 77777 7888899999999999998887766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=3.1e-25  Score=194.01  Aligned_cols=122  Identities=21%  Similarity=0.223  Sum_probs=68.5

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (290)
                      +..++...+..+++|++|++++|.+.+..+.    .|..+++|++|++++|.+.+..|..+..+++|++|++++|.++. 
T Consensus        57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-  131 (390)
T 3o6n_A           57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-  131 (390)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             hhhCChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-
Confidence            3344444455566666666666666655444    55666666666666666665555556666666666666666653 


Q ss_pred             cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC
Q 022897          164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT  213 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  213 (290)
                      .+...+..+++|++|++++|.+  . .++...+..+++|++|++++|.++
T Consensus       132 l~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          132 LPRGIFHNTPKLTTLSMSNNNL--E-RIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCC--C-BCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCHHHhcCCCCCcEEECCCCcc--C-ccChhhccCCCCCCEEECCCCcCC
Confidence            2333345566666666666654  2 222224555555555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=6.6e-25  Score=187.90  Aligned_cols=225  Identities=25%  Similarity=0.301  Sum_probs=164.0

Q ss_pred             CCCCCCCCCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchh
Q 022897           45 MPSDCCDDWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENK  115 (290)
Q Consensus        45 ~~~~~c~~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  115 (290)
                      |+..|.+.|..+.|.....         .++.++++++.         +..+.+..+..+++|++|++++|.+++..+. 
T Consensus        27 cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   96 (332)
T 2ft3_A           27 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNND---------ISELRKDDFKGLQHLYALVLVNNKISKIHEK-   96 (332)
T ss_dssp             CCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSCCCEECGG-
T ss_pred             CCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCc---------CCccCHhHhhCCCCCcEEECCCCccCccCHh-
Confidence            5555623899999964221         33444444433         4455566788899999999999999887666 


Q ss_pred             hhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhh
Q 022897          116 AYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG  195 (290)
Q Consensus       116 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  195 (290)
                         .|..+++|++|++++|.++ .+|..+.  ++|++|++++|.++.. ++..+..+++|++|++++|.+...+..+. .
T Consensus        97 ---~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~  168 (332)
T 2ft3_A           97 ---AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPG-A  168 (332)
T ss_dssp             ---GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTT-S
T ss_pred             ---HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcc-c
Confidence               7888999999999999887 4554443  7788888888887753 33457777888888888777532111111 2


Q ss_pred             hccC--------------------CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeC
Q 022897          196 LANL--------------------TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDL  251 (290)
Q Consensus       196 ~~~~--------------------~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l  251 (290)
                      +..+                    ++|++|++++|.++  .+..+..+++|++|++++|.+++  +..+..+++|++|++
T Consensus       169 ~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          169 FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             SCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             ccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence            2221                    46777777777777  34677888899999999999888  346888899999999


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++|.++ .+|.. +..+++|++|++++|++++.++..|
T Consensus       249 ~~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          249 DNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CSSCCC-BCCTT-GGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             CCCcCe-ecChh-hhcCccCCEEECCCCCCCccChhHc
Confidence            999998 78877 7888999999999999998887765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=4.5e-26  Score=193.58  Aligned_cols=191  Identities=20%  Similarity=0.207  Sum_probs=170.6

Q ss_pred             CCCcCCCCCCCcEEECCC-CcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcch
Q 022897           88 NMSLFHPFEELQSLNLSD-NWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTM  166 (290)
Q Consensus        88 ~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  166 (290)
                      .+..+..+++|++|++++ |.+.+.+|.    .|..+++|++|++++|.+++.+|..+..+++|++|++++|.+++..+ 
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-  142 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-  142 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-
T ss_pred             cChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-
Confidence            356788999999999995 899888877    78999999999999999998899999999999999999999987655 


Q ss_pred             hhcccCCCCCeeeCCCCCCCCCCccchhhhccCC-CccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccc
Q 022897          167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLT-NLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLA  241 (290)
Q Consensus       167 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~  241 (290)
                      ..+..+++|++|++++|.+  .+.+|. .+..++ +|++|++++|.++  .+..+..+. |++|++++|.+++  +..+.
T Consensus       143 ~~~~~l~~L~~L~L~~N~l--~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          143 PSISSLPNLVGITFDGNRI--SGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCC--EEECCG-GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred             hHHhcCCCCCeEECcCCcc--cCcCCH-HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence            4789999999999999997  567776 788887 9999999999998  677777777 9999999999987  67789


Q ss_pred             cCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       242 ~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      .+++|+.|++++|.+++.+|.  +..+++|++|+|++|++++.+|..|
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             cCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHH
Confidence            999999999999999976665  7889999999999999999888765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=3.8e-24  Score=179.30  Aligned_cols=186  Identities=22%  Similarity=0.194  Sum_probs=161.5

Q ss_pred             CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCC-CCCCcchhhcccCC
Q 022897           95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNS-IEGSGTMQGLANLR  173 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~  173 (290)
                      .++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|. +.. ..+..+..++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-~~~~~~~~l~  105 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLG  105 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTCT
T ss_pred             CCCceEEEeeCCcCCccCHH----HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc-cCHHHhcCCc
Confidence            46899999999999987766    78999999999999999998778899999999999999998 654 4456889999


Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEE
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEAL  249 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L  249 (290)
                      +|++|++++|.+  . .++...+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +..+..+++|++|
T Consensus       106 ~L~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  182 (285)
T 1ozn_A          106 RLHTLHLDRCGL--Q-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL  182 (285)
T ss_dssp             TCCEEECTTSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcC--C-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence            999999999996  3 343337889999999999999998  34458899999999999999998  3358899999999


Q ss_pred             eCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          250 DLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       250 ~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++++|.+++..|.. +..+++|++|++++|++++.+++.|
T Consensus       183 ~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~  221 (285)
T 1ozn_A          183 LLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEAL  221 (285)
T ss_dssp             ECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             ECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHc
Confidence            99999999655655 8999999999999999999887644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=6.8e-25  Score=196.78  Aligned_cols=227  Identities=23%  Similarity=0.318  Sum_probs=141.4

Q ss_pred             CCCCC-CC-CCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccc
Q 022897           45 MPSDC-CD-DWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYE  113 (290)
Q Consensus        45 ~~~~~-c~-~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  113 (290)
                      |+..| |. .|..|.|.....         .++.++++++.         +..+.+..|..+++|++|++++|.+.+..+
T Consensus         3 Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~   73 (477)
T 2id5_A            3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNR---------IKTLNQDEFASFPHLEELELNENIVSAVEP   73 (477)
T ss_dssp             CSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSC---------CCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             ccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCc---------cceECHhHccCCCCCCEEECCCCccCEeCh
Confidence            66666 52 467899964221         23444444443         444445567777788888888877777666


Q ss_pred             hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccch
Q 022897          114 NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTR  193 (290)
Q Consensus       114 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  193 (290)
                      .    .|..+++|++|+|++|.++...+..|..+++|++|++++|.+.+.. +..+..+++|++|++++|.+  . .+..
T Consensus        74 ~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~l--~-~~~~  145 (477)
T 2id5_A           74 G----AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDL--V-YISH  145 (477)
T ss_dssp             T----TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEEECCTTC--C-EECT
T ss_pred             h----hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEEECCCCcc--c-eeCh
Confidence            5    6777777777777777777555555667777777777777766432 23555666666666666654  2 2222


Q ss_pred             hhhccCCCccEEEcCCCCCC--------------------------CCcCCCCCCCCcEEEccCCCCCC--ccccccCCC
Q 022897          194 LGLANLTNLKELDLRGCGIT--------------------------TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKN  245 (290)
Q Consensus       194 ~~~~~~~~L~~L~l~~n~l~--------------------------~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~  245 (290)
                      ..+..+++|++|++++|.++                          .+..+..+++|++|++++|.+.+  ++......+
T Consensus       146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence            24445555555555555444                          22344455555555555554443  333333446


Q ss_pred             CCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          246 LEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       246 L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      |+.|++++|.++ .+|...+..+++|++|+|++|+++++++..|
T Consensus       226 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          226 LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             CSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             ccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            777777777777 5665558889999999999999999888766

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=7.9e-24  Score=188.62  Aligned_cols=199  Identities=25%  Similarity=0.284  Sum_probs=128.7

Q ss_pred             ccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh-ccCCCCCCEEEccCCCCCCCc
Q 022897           86 LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSLTTLILYSNSIEGSG  164 (290)
Q Consensus        86 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~  164 (290)
                      ...+..++.+++|++|++++|.+.+..+..  ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..
T Consensus        93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A           93 QLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred             ccChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence            344566778888888888888887644331  13777888888888888887766655 677888888888888776543


Q ss_pred             chhhcc----------------------------------cCCCCCeeeCCCCCCCC-----------------------
Q 022897          165 TMQGLA----------------------------------NLRYLQVLDLSWNENIT-----------------------  187 (290)
Q Consensus       165 ~~~~~~----------------------------------~l~~L~~L~l~~n~~~~-----------------------  187 (290)
                      +. .+.                                  .+++|++|++++|.+..                       
T Consensus       171 ~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          171 EE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             TT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             hh-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            21 111                                  12345555555443310                       


Q ss_pred             --------------------------------------CCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEE
Q 022897          188 --------------------------------------SGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTL  227 (290)
Q Consensus       188 --------------------------------------~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L  227 (290)
                                                            .+..+ ..+..+++|++|++++|.++  .+..+..+++|++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  328 (455)
T 3v47_A          250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL  328 (455)
T ss_dssp             TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence                                                  11112 24566677777777777776  45566777777777


Q ss_pred             EccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          228 DLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       228 ~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++++|.+++  +..+..+++|++|++++|.+++..|.. +..+++|++|+|++|++++++++.|
T Consensus       329 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~  391 (455)
T 3v47_A          329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS-FLGLPNLKELALDTNQLKSVPDGIF  391 (455)
T ss_dssp             ECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh-ccccccccEEECCCCccccCCHhHh
Confidence            777777766  445666777777777777776433444 6677777777777777777666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=4.1e-24  Score=178.26  Aligned_cols=206  Identities=25%  Similarity=0.258  Sum_probs=168.4

Q ss_pred             cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh
Q 022897           64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY  143 (290)
Q Consensus        64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  143 (290)
                      .++.++++++.         +..+....+..+++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..+..
T Consensus        29 ~l~~L~ls~n~---------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           29 STKNLDLSFNP---------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             TCCEEECTTCC---------CCEECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CccEEECCCCc---------ccccCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhh
Confidence            35556666554         3444555788899999999999999887665    7889999999999999998877788


Q ss_pred             ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCC
Q 022897          144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADL  221 (290)
Q Consensus       144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l  221 (290)
                      +..+++|++|++++|.+.+... ..+..+++|++|++++|.+... .++. .+..+++|++|++++|.++  .+..+..+
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  172 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSF-KLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVL  172 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCC-CCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             hcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCcccee-cCch-hhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence            9999999999999999986433 3688999999999999997221 3455 7899999999999999998  34556555


Q ss_pred             CCCc----EEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          222 PNLK----TLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       222 ~~L~----~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      .+|+    +|++++|.+++ ++......+|+.|++++|.++ .+|...+..+++|++|+|++|++++..|
T Consensus       173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             hhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCC
Confidence            5665    89999999998 444445568999999999999 5666658999999999999999998765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.2e-24  Score=186.01  Aligned_cols=183  Identities=23%  Similarity=0.259  Sum_probs=163.2

Q ss_pred             CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCC
Q 022897           95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY  174 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  174 (290)
                      ...++.|++++|.+... +.    .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++ ..+..+++
T Consensus        80 ~~~l~~L~L~~n~l~~l-p~----~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~  151 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQF-PD----QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP-ASIASLNR  151 (328)
T ss_dssp             STTCCEEEEESSCCSSC-CS----CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCC-GGGGGCTT
T ss_pred             ccceeEEEccCCCchhc-Ch----hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCc-HHHhcCcC
Confidence            46899999999999854 43    5777999999999999998 78999999999999999999998 444 57999999


Q ss_pred             CCeeeCCCCCCCCCCccchhhhc---------cCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccC
Q 022897          175 LQVLDLSWNENITSGSLTRLGLA---------NLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKL  243 (290)
Q Consensus       175 L~~L~l~~n~~~~~~~~~~~~~~---------~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~  243 (290)
                      |++|++++|.+  .+.+|. .+.         .+++|++|++++|.++ +|..+..+++|++|++++|.+++ ++.+..+
T Consensus       152 L~~L~L~~n~~--~~~~p~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l  228 (328)
T 4fcg_A          152 LRELSIRACPE--LTELPE-PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL  228 (328)
T ss_dssp             CCEEEEEEETT--CCCCCS-CSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred             CCEEECCCCCC--ccccCh-hHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence            99999999887  666775 443         4999999999999998 77889999999999999999999 6779999


Q ss_pred             CCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       244 ~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++|++|++++|.+.+.+|.. +..+++|++|+|++|++.+.+|..|
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~  273 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDI  273 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred             CCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhh
Confidence            99999999999999888887 9999999999999999999998755

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=9.3e-24  Score=187.57  Aligned_cols=189  Identities=23%  Similarity=0.254  Sum_probs=166.1

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (290)
                      +..+.+..|..+++|++|++++|.++...+.    .|..+++|++|++++|.+....+..|..+++|++|++++|...+.
T Consensus       100 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~  175 (440)
T 3zyj_A          100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY  175 (440)
T ss_dssp             CCEECGGGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred             CCccChhhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence            3445556788999999999999999987766    789999999999999999877777889999999999999776666


Q ss_pred             cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccc
Q 022897          164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQG  239 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~  239 (290)
                      ++...+..+++|++|++++|.+   ..++  .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +..
T Consensus       176 i~~~~~~~l~~L~~L~L~~n~l---~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  250 (440)
T 3zyj_A          176 ISEGAFEGLSNLRYLNLAMCNL---REIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA  250 (440)
T ss_dssp             ECTTTTTTCSSCCEEECTTSCC---SSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS
T ss_pred             eCcchhhcccccCeecCCCCcC---cccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh
Confidence            6666789999999999999996   3455  5788999999999999998  57889999999999999999998  567


Q ss_pred             cccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897          240 LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT  282 (290)
Q Consensus       240 l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  282 (290)
                      +..+++|+.|+|++|.++ .++...+..+++|+.|+|++|++.
T Consensus       251 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             STTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             hcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCcc
Confidence            899999999999999999 566666899999999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1.5e-23  Score=186.78  Aligned_cols=190  Identities=23%  Similarity=0.256  Sum_probs=166.4

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (290)
                      +..+.+..+..+++|++|++++|.++...+.    .|..+++|++|++++|.+....+..|..+++|++|++++|...+.
T Consensus       111 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~  186 (452)
T 3zyi_A          111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY  186 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred             cCCcChhhccCcccCCEEECCCCcCCccChh----hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence            4455667788999999999999999987766    788999999999999999876667889999999999999766666


Q ss_pred             cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccc
Q 022897          164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQG  239 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~  239 (290)
                      ++...+..+++|++|++++|.+.   .++  .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +..
T Consensus       187 i~~~~~~~l~~L~~L~L~~n~l~---~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  261 (452)
T 3zyi_A          187 ISEGAFEGLFNLKYLNLGMCNIK---DMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA  261 (452)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCS---SCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cChhhccCCCCCCEEECCCCccc---ccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH
Confidence            66667889999999999999963   344  5788999999999999998  57789999999999999999998  667


Q ss_pred             cccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897          240 LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       240 l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      +..+++|+.|+|++|.++ .+|...+..+++|++|+|++|++.-
T Consensus       262 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             hcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcCC
Confidence            899999999999999999 5666668999999999999998753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=3.4e-23  Score=185.69  Aligned_cols=190  Identities=24%  Similarity=0.305  Sum_probs=130.7

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      .+..+++|++|++++|.+.+..+.    .|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++. +...+.
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~  173 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALS  173 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHT
T ss_pred             cccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhc
Confidence            344445555555555554444333    445555555555555555544444555555566666666555542 333456


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCCc--cccccCCCC
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITTI--QGLAKLKNL  246 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L  246 (290)
                      .+++|+.|++.+|.+   ..++...+..+++|++|++++|...  .+.......+|++|++++|.++..  ..+..+++|
T Consensus       174 ~l~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          174 HLHGLIVLRLRHLNI---NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             TCTTCCEEEEESCCC---CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             ccCCCcEEeCCCCcC---cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            666666666666664   2233336778888999999988765  555566667999999999999983  468899999


Q ss_pred             CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       247 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      +.|+|++|.++ .++...+..+++|++|+|++|+++++.|..|
T Consensus       251 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          251 RFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             CEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             CeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHh
Confidence            99999999998 5665558999999999999999999988776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=3e-23  Score=191.37  Aligned_cols=191  Identities=23%  Similarity=0.277  Sum_probs=119.7

Q ss_pred             CcCCCCCCCcEEECCCCcccCcc--chhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchh
Q 022897           90 SLFHPFEELQSLNLSDNWFRGFY--ENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQ  167 (290)
Q Consensus        90 ~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  167 (290)
                      ..+..+++|++|++++|.+.+..  +.    .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..
T Consensus       344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          344 GCLENLENLRELDLSHDDIETSDCCNL----QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             STTTTCTTCCEEECCSSCCCEEEESTT----TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             hhhhccCcCCEEECCCCccccccCcch----hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            34556666666666666665543  22    4566666666666666666555666666667777777766666544443


Q ss_pred             hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-----CCcCCCCCCCCcEEEccCCCCCC--cccc
Q 022897          168 GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-----TSQGLADLPNLKTLDLRDCGITT--IQGL  240 (290)
Q Consensus       168 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~l~~--~~~l  240 (290)
                      .+..+++|++|++++|.+  .+..+. .+..+++|++|++++|.++     .+..+..+++|++|++++|.+++  +..+
T Consensus       420 ~~~~l~~L~~L~l~~n~l--~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLL--DISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             TTTTCTTCCEEECTTCCC--BTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred             hhhCcccCCEEECCCCcc--CCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence            466666777777776665  333333 5666667777777777665     12345666677777777777666  4456


Q ss_pred             ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       241 ~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ..+++|++|++++|.+++..|.. +..+++| +|++++|++++.+|+.|
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~~~~~~~~  543 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHISIILPSLL  543 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred             ccccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCcccccCHhhc
Confidence            66777777777777776544444 6667777 77777777777666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.7e-22  Score=176.56  Aligned_cols=97  Identities=23%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (290)
                      +..+++..+..+++|++|++++|.+.+..+.    .|..+++|++|++++|.+....+..+..+++|++|++++|.+++.
T Consensus        81 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  156 (390)
T 3o6n_A           81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI  156 (390)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             ccccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence            3445556788899999999999999887776    778889999999999988855555567889999999999988764


Q ss_pred             cchhhcccCCCCCeeeCCCCCC
Q 022897          164 GTMQGLANLRYLQVLDLSWNEN  185 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~~  185 (290)
                       ++..+..+++|++|++++|.+
T Consensus       157 -~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          157 -EDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             -CTTTTSSCTTCCEEECCSSCC
T ss_pred             -ChhhccCCCCCCEEECCCCcC
Confidence             334677888888888888876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=1.6e-23  Score=170.94  Aligned_cols=182  Identities=16%  Similarity=0.219  Sum_probs=91.8

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCCCchhhccCCCCCCEEEccC-CCCCCCcchhhcccCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FNDSILPYLNTLTSLTTLILYS-NSIEGSGTMQGLANLRY  174 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~  174 (290)
                      +|++|++++|.+++..+.    .|..+++|++|++++|. ++...+..|..+++|++|++++ |.++. +++..+..+++
T Consensus        32 ~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPL  106 (239)
T ss_dssp             TCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTT
T ss_pred             cccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCC
Confidence            455555555555554443    45555555555555554 4433333455555555555555 55543 22234555555


Q ss_pred             CCeeeCCCCCCCCCCccchhhhccCCCcc---EEEcCCC-CCC--CCcCCCCCCCCc-EEEccCCCCCC-ccccccCCCC
Q 022897          175 LQVLDLSWNENITSGSLTRLGLANLTNLK---ELDLRGC-GIT--TSQGLADLPNLK-TLDLRDCGITT-IQGLAKLKNL  246 (290)
Q Consensus       175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~--~~~~~~~l~~L~-~L~l~~n~l~~-~~~l~~~~~L  246 (290)
                      |++|++++|.+  . .+|.  +..+++|+   +|++++| .++  .+..+..+++|+ +|++++|.++. +......++|
T Consensus       107 L~~L~l~~n~l--~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L  181 (239)
T 2xwt_C          107 LKFLGIFNTGL--K-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL  181 (239)
T ss_dssp             CCEEEEEEECC--C-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE
T ss_pred             CCEEeCCCCCC--c-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCC
Confidence            55555555554  1 2332  44444444   5555555 554  223355555555 55555555554 2222122455


Q ss_pred             CEEeCCCCC-CCCcccccccCCC-CCCCEEecCCCCCcccccccC
Q 022897          247 EALDLSWNN-INGSLESQGLADL-PNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       247 ~~L~l~~n~-l~~~i~~~~l~~l-~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      +.|++++|. ++ .++...+..+ ++|++|++++|+++++++..|
T Consensus       182 ~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~  225 (239)
T 2xwt_C          182 DAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL  225 (239)
T ss_dssp             EEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred             CEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence            555555553 54 4444335555 555555555555555554433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=3.6e-23  Score=190.79  Aligned_cols=119  Identities=19%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             CCceEecccc---------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCC
Q 022897           53 WEGVKCNATT---------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSL  123 (290)
Q Consensus        53 w~gv~c~~~~---------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l  123 (290)
                      +..+.|....         ..++.++++++.         +..+.+..+..+++|++|++++|.+.+..+.    .|..+
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l   80 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNV---------LPTIQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQ   80 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCC---------CSEECTTTSTTCTTCSEEECTTCCCCEECTT----TTTTC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCc---------cCcCChhHhccCccceEEECCCCccceeChh----hccCc
Confidence            5567775321         245556666554         3334444566666666666666666655444    55566


Q ss_pred             CCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCC
Q 022897          124 KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNEN  185 (290)
Q Consensus       124 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  185 (290)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+..+++|++|++++|.+
T Consensus        81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A           81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEECCSSCC
T ss_pred             cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEECCCCcc
Confidence            66666666666655555555555555555555555555421 12344444455555544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1e-23  Score=179.05  Aligned_cols=182  Identities=24%  Similarity=0.247  Sum_probs=129.1

Q ss_pred             CCCCCCcEEECCCCcccCccchhhhhhcCCC-----CCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcc-h
Q 022897           93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSL-----KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGT-M  166 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~  166 (290)
                      ..+++|++|++++|.+++. +.    .+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+... +
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             hcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            6778888888888888776 43    33333     788888888888877777778888888888888888765321 1


Q ss_pred             hhc--ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCC-C--cCCCCCCCCcEEEccCCCCCC-cccc
Q 022897          167 QGL--ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT-S--QGLADLPNLKTLDLRDCGITT-IQGL  240 (290)
Q Consensus       167 ~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~-~~~l  240 (290)
                      ..+  ..+++|++|++++|.+...+.++...+..+++|++|++++|.++. +  ..+..+++|++|++++|.++. +..+
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~  272 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL  272 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence            233  677888888888887632223443345677888888888888872 2  455667788888888888887 4444


Q ss_pred             ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       241 ~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      .  ++|++|++++|.+++ +|.  +..+++|++|+|++|++++.
T Consensus       273 ~--~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             C--SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTTCC
T ss_pred             c--CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCCCC
Confidence            4  678888888888874 444  77788888888888888764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.3e-22  Score=170.37  Aligned_cols=196  Identities=24%  Similarity=0.211  Sum_probs=159.1

Q ss_pred             CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh
Q 022897           63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP  142 (290)
Q Consensus        63 ~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  142 (290)
                      ..++.+++.++.         +..++...   .++++.|++++|.+.+..+.    .|..+++|++|++++|.+++. +.
T Consensus        10 ~~l~~l~~~~~~---------l~~ip~~~---~~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~-~~   72 (290)
T 1p9a_G           10 ASHLEVNCDKRN---------LTALPPDL---PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKL-QV   72 (290)
T ss_dssp             TTCCEEECTTSC---------CSSCCSCC---CTTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEE-EC
T ss_pred             CCccEEECCCCC---------CCcCCCCC---CCCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCcc-cC
Confidence            456677777655         22333322   26899999999999887776    789999999999999999853 33


Q ss_pred             hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCC
Q 022897          143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLAD  220 (290)
Q Consensus       143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~  220 (290)
                       ...+++|++|++++|.++. ++ ..+..+++|++|++++|.+   ..++...+..+++|++|++++|.++  .+..+..
T Consensus        73 -~~~l~~L~~L~Ls~N~l~~-l~-~~~~~l~~L~~L~l~~N~l---~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           73 -DGTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRL---TSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             -CSCCTTCCEEECCSSCCSS-CC-CCTTTCTTCCEEECCSSCC---CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             -CCCCCcCCEEECCCCcCCc-Cc-hhhccCCCCCEEECCCCcC---cccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence             2789999999999999974 23 4678899999999999996   3455447889999999999999998  3455788


Q ss_pred             CCCCcEEEccCCCCCC-c-cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897          221 LPNLKTLDLRDCGITT-I-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       221 l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      +++|+.|++++|+++. + ..+..+++|++|++++|.++ .+|.. +...++|+.|+|++|++..
T Consensus       147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECCSCCBCC
T ss_pred             ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEEeCCCCccC
Confidence            9999999999999998 3 34688999999999999998 78887 6677899999999998864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.4e-23  Score=171.16  Aligned_cols=179  Identities=22%  Similarity=0.229  Sum_probs=107.8

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      +..+++|++|++++|.+.+. +     .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. ++..+..
T Consensus        59 l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~  131 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDK  131 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTT
T ss_pred             cccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhcc
Confidence            45566666666666666553 1     456666666666666666655555566666666666666666643 3234566


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCC
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLE  247 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~  247 (290)
                      +++|++|++++|.+  . .++...+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +..+..+++|+
T Consensus       132 l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          132 LTNLTYLNLAHNQL--Q-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             CTTCCEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcc--C-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            66666666666664  2 333334566666666666666666  23335566666666666666666  23356666666


Q ss_pred             EEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897          248 ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       248 ~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~  288 (290)
                      .|++++|.+.+        .+++|+.++++.|+++|.+|..
T Consensus       209 ~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          209 YIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             EEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             EEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCc
Confidence            66666665543        2345566666666666666643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=1.4e-23  Score=191.38  Aligned_cols=217  Identities=24%  Similarity=0.318  Sum_probs=169.8

Q ss_pred             CCCCCceEecccc-----------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhh
Q 022897           50 CDDWEGVKCNATT-----------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYD  118 (290)
Q Consensus        50 c~~w~gv~c~~~~-----------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  118 (290)
                      | .|.|+ |+...           ..++.++++++.         +..+.+..+..+++|++|++++|.+.+..+.    
T Consensus         4 C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----   68 (549)
T 2z81_A            4 C-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK---------ITYIGHGDLRACANLQVLILKSSRINTIEGD----   68 (549)
T ss_dssp             E-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC---------CCEECSSTTSSCTTCCEEECTTSCCCEECTT----
T ss_pred             C-CCCce-EECCCCccccccccCCCCccEEECcCCc---------cCccChhhhhcCCcccEEECCCCCcCccChh----
Confidence            5 78887 75322           235555555544         3444556788999999999999999988776    


Q ss_pred             hcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897          119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN  198 (290)
Q Consensus       119 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  198 (290)
                      .|..+++|++|++++|.+++..+..++.+++|++|++++|.+++...+..+..+++|++|++++|.+  .+.++...+..
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~  146 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAG  146 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTT
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc--ccccCHhhhhc
Confidence            7899999999999999999888888999999999999999998643445788999999999999986  56677557899


Q ss_pred             CCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccc-cccCCCCCEEeCCCCCCCCcc--cccccCCCCCCC
Q 022897          199 LTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQG-LAKLKNLEALDLSWNNINGSL--ESQGLADLPNLK  272 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~~~~L~~L~l~~n~l~~~i--~~~~l~~l~~L~  272 (290)
                      +++|++|++++|.++  .+..+..+++|++|+++.|.+.. +.. +..+++|++|++++|.+++..  +......+++|+
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  226 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK  226 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence            999999999999998  78888999999999999998877 333 356889999999999988531  222234456666


Q ss_pred             EEecCCCCCcc
Q 022897          273 ILDLRDCGMTT  283 (290)
Q Consensus       273 ~L~L~~n~l~~  283 (290)
                      .|++++|.+++
T Consensus       227 ~L~l~~n~l~~  237 (549)
T 2z81_A          227 KLAFRGSVLTD  237 (549)
T ss_dssp             EEEEESCEEEH
T ss_pred             ceeccccccch
Confidence            66666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=3.9e-23  Score=174.83  Aligned_cols=184  Identities=23%  Similarity=0.249  Sum_probs=157.4

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      +..+++|++|++++|.+.....     .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ ..+.
T Consensus        74 ~~~~~~L~~L~Ls~n~i~~l~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~  147 (306)
T 2z66_A           74 DFGTTSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFN  147 (306)
T ss_dssp             HHSCSCCCEEECCSCSEEEEEE-----EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTT
T ss_pred             cccccccCEEECCCCccccChh-----hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcc
Confidence            4458999999999999886433     67889999999999999986554 578899999999999999876543 4788


Q ss_pred             cCCCCCeeeCCCCCCCCCC-ccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCC
Q 022897          171 NLRYLQVLDLSWNENITSG-SLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKN  245 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~  245 (290)
                      .+++|++|++++|.+  .+ .++. .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +..+..+++
T Consensus       148 ~l~~L~~L~l~~n~l--~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          148 GLSSLEVLKMAGNSF--QENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TCTTCCEEECTTCEE--GGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             cCcCCCEEECCCCcc--ccccchh-HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            899999999999987  44 2444 7889999999999999998  57788999999999999999998  346888999


Q ss_pred             CCEEeCCCCCCCCcccccccCCCC-CCCEEecCCCCCcccc
Q 022897          246 LEALDLSWNNINGSLESQGLADLP-NLKILDLRDCGMTTIQ  285 (290)
Q Consensus       246 L~~L~l~~n~l~~~i~~~~l~~l~-~L~~L~L~~n~l~~~~  285 (290)
                      |++|++++|.+++..|.. +..++ +|++|+|++|++++..
T Consensus       225 L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEECSG
T ss_pred             CCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCeeccc
Confidence            999999999999766666 77774 9999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=3.9e-22  Score=165.96  Aligned_cols=184  Identities=24%  Similarity=0.241  Sum_probs=156.4

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      ....+++|+.|++++|.+....      .+..+++|++|++++|.+.+.  +.+..+++|++|++++|.+++. ++..+.
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~~------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~~~  106 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSVQ------GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL-PNGVFD  106 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCT------TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC-CTTTTT
T ss_pred             ccccccceeeeeeCCCCccccc------ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc-ChhHhc
Confidence            3556789999999999887542      577899999999999999863  4788999999999999999864 444688


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCC
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNL  246 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L  246 (290)
                      .+++|++|++++|.+  . .++...+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +..+..+++|
T Consensus       107 ~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          107 KLTNLKELVLVENQL--Q-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL  183 (272)
T ss_dssp             TCTTCCEEECTTSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCcCCCEEECCCCcC--C-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence            999999999999996  3 455446889999999999999998  34457899999999999999998  3447899999


Q ss_pred             CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897          247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       247 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      ++|++++|.+++ +++..+..+++|++|++++|++.+..|.
T Consensus       184 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          184 KDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            999999999996 4444489999999999999999988774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.1e-22  Score=185.40  Aligned_cols=97  Identities=23%  Similarity=0.174  Sum_probs=77.7

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (290)
                      +..+++..++.+++|++|++++|.+.+..+.    .|+.+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus        87 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B           87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI  162 (597)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence            4455556788899999999999999887776    678889999999999988866556678888999999999988764


Q ss_pred             cchhhcccCCCCCeeeCCCCCC
Q 022897          164 GTMQGLANLRYLQVLDLSWNEN  185 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~~  185 (290)
                      .+ ..+..+++|++|++++|.+
T Consensus       163 ~~-~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          163 ED-DTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             CT-TTTTTCTTCCEEECTTSCC
T ss_pred             Ch-hhhhcCCcCcEEECcCCCC
Confidence            33 4677888888888888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=2e-22  Score=165.69  Aligned_cols=188  Identities=23%  Similarity=0.284  Sum_probs=150.7

Q ss_pred             CCCCCCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCc
Q 022897           48 DCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLK  127 (290)
Q Consensus        48 ~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~  127 (290)
                      .|+ .|.|+.|..   ....+++.+..         +..++...   .+++++|++++|.+.+..+.    .|..+++|+
T Consensus         3 ~Cp-~~~gC~C~~---~~~~l~~~~~~---------l~~~p~~~---~~~l~~L~L~~n~l~~~~~~----~~~~l~~L~   62 (251)
T 3m19_A            3 TCE-TVTGCTCNE---GKKEVDCQGKS---------LDSVPSGI---PADTEKLDLQSTGLATLSDA----TFRGLTKLT   62 (251)
T ss_dssp             -CH-HHHSSEEEG---GGTEEECTTCC---------CSSCCSCC---CTTCCEEECTTSCCCCCCTT----TTTTCTTCC
T ss_pred             cCC-CCCceEcCC---CCeEEecCCCC---------ccccCCCC---CCCCCEEEccCCCcCccCHh----HhcCcccCC
Confidence            355 899999953   23345666654         22232221   25799999999999988776    788999999


Q ss_pred             EEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEc
Q 022897          128 ILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL  207 (290)
Q Consensus       128 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l  207 (290)
                      +|++++|.+++..+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+   ..++...+..+++|++|++
T Consensus        63 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L  138 (251)
T 3m19_A           63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQL---KSLPSGVFDRLTKLKELRL  138 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcC---CCcChhHhccCCcccEEEC
Confidence            999999999988888889999999999999999854 445788899999999999986   3455546788999999999


Q ss_pred             CCCCCC-CC-cCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCc
Q 022897          208 RGCGIT-TS-QGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGS  259 (290)
Q Consensus       208 ~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~  259 (290)
                      ++|.++ .+ ..+..+++|++|++++|.+++  +..+..+++|+.|++++|.+.+.
T Consensus       139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            999998 33 468889999999999999998  34688889999999999999865

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=181.68  Aligned_cols=174  Identities=20%  Similarity=0.237  Sum_probs=122.7

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCEEEccCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTTLILYSNSIEG  162 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~  162 (290)
                      +..+.+..+..+++|++|++++|.+++..+.    .|..+++|++|++++|.+..... ..+..+++|++|++++|...+
T Consensus        88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A           88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             cCccCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence            3445556688889999999999999876654    57888999999999998875333 367788888888888885333


Q ss_pred             CcchhhcccCCCCCeeeCCCCCCCC---------------------CCccchhhhccCCCccEEEcCCCCCCC-C-----
Q 022897          163 SGTMQGLANLRYLQVLDLSWNENIT---------------------SGSLTRLGLANLTNLKELDLRGCGITT-S-----  215 (290)
Q Consensus       163 ~~~~~~~~~l~~L~~L~l~~n~~~~---------------------~~~~~~~~~~~~~~L~~L~l~~n~l~~-~-----  215 (290)
                      ..++..+..+++|++|++++|.+..                     ...++...+..+++|++|++++|.++. +     
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  243 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS  243 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence            3334456666666666666665411                     112222223345666666666666651 1     


Q ss_pred             ---------------------------cCCCCCCCCcEEEccCCCCCC-ccc-cccCCCCCEEeCCCCCCCCccc
Q 022897          216 ---------------------------QGLADLPNLKTLDLRDCGITT-IQG-LAKLKNLEALDLSWNNINGSLE  261 (290)
Q Consensus       216 ---------------------------~~~~~l~~L~~L~l~~n~l~~-~~~-l~~~~~L~~L~l~~n~l~~~i~  261 (290)
                                                 ..+..+++|++|++++|.++. +.. +..+++|++|++++|.+++..|
T Consensus       244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                                       123467899999999999998 444 5899999999999999998765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=3.6e-23  Score=175.47  Aligned_cols=186  Identities=21%  Similarity=0.124  Sum_probs=148.7

Q ss_pred             CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCc--c-hhhc
Q 022897           93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSG--T-MQGL  169 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~-~~~~  169 (290)
                      ..+++|++|++++|.+.+..+......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..  + ...+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            789999999999999987654322225568999999999999999888889999999999999999986521  1 1223


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCC---CCCcEEEccCCCCCC-ccccccC
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADL---PNLKTLDLRDCGITT-IQGLAKL  243 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l---~~L~~L~l~~n~l~~-~~~l~~~  243 (290)
                      ..+++|++|++++|.+......+...+..+++|++|++++|.++  .|..+..+   ++|++|++++|.++. +..+.  
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--  271 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--  271 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--
Confidence            67899999999999973222222223578899999999999998  36666666   699999999999998 44443  


Q ss_pred             CCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897          244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       244 ~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      ++|++|++++|.+++ +|.  +..+++|+.|+|++|+++.
T Consensus       272 ~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTSC
T ss_pred             CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCCC
Confidence            799999999999994 444  5678999999999999975

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=8.5e-23  Score=170.27  Aligned_cols=185  Identities=29%  Similarity=0.326  Sum_probs=156.8

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ++|++|++++|.+++..+.    .|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. ++..+..+++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccc
Confidence            4799999999999987765    788999999999999999877777889999999999999999864 33578899999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCC---
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLE---  247 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~---  247 (290)
                      ++|++++|.+  . .++...+..+++|++|++++|.++   .+..+..+++|++|++++|.+++  +..+..+++|+   
T Consensus       103 ~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~  179 (276)
T 2z62_A          103 QKLVAVETNL--A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  179 (276)
T ss_dssp             CEEECTTSCC--C-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             cEEECCCCCc--c-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence            9999999996  3 344336889999999999999987   47789999999999999999998  34566666666   


Q ss_pred             -EEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccCC
Q 022897          248 -ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       248 -~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f~  290 (290)
                       .|++++|.++ .++...+ ...+|++|+|++|++++.++..|+
T Consensus       180 l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          180 LSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             EEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTT
T ss_pred             eeeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhHhc
Confidence             8999999998 5666534 445899999999999999887763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=7.1e-22  Score=182.63  Aligned_cols=96  Identities=22%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             ccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcc
Q 022897           86 LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGT  165 (290)
Q Consensus        86 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  165 (290)
                      .+++..|.++++|++|+|++|.+++..+.    .|.++++|++|++++|.+++..+..|+++++|++|++++|.++....
T Consensus        90 ~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~  165 (635)
T 4g8a_A           90 TIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL  165 (635)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECGG----GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred             CcChhHhcCCCCCCEEEccCCcCCCCCHH----HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC
Confidence            44455566677777777777776665554    67777777777777777776555567778888888888887765444


Q ss_pred             hhhcccCCCCCeeeCCCCCC
Q 022897          166 MQGLANLRYLQVLDLSWNEN  185 (290)
Q Consensus       166 ~~~~~~l~~L~~L~l~~n~~  185 (290)
                      +..+..+++|++|++++|.+
T Consensus       166 ~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          166 PEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             CGGGGGCTTCCEEECCSSCC
T ss_pred             chhhccchhhhhhcccCccc
Confidence            45667777788777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=6.8e-22  Score=165.98  Aligned_cols=156  Identities=29%  Similarity=0.233  Sum_probs=72.1

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      .+..+++|++|++++|.+++..+      ...+++|++|++++|.+. .+|..+..+++|++|++++|.+++. ++..+.
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~  121 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALR  121 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-CSSTTT
T ss_pred             HhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCccc-CHHHHc
Confidence            34445555555555555443321      134445555555555544 3344444455555555555555432 222444


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CC-cCCCCCCCCcEEEccCCCCCC-ccccccCCCCC
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TS-QGLADLPNLKTLDLRDCGITT-IQGLAKLKNLE  247 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~  247 (290)
                      .+++|++|++++|.+   ..++...+..+++|++|++++|+++ .+ ..+..+++|++|++++|.++. +..+...++|+
T Consensus       122 ~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~  198 (290)
T 1p9a_G          122 GLGELQELYLKGNEL---KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP  198 (290)
T ss_dssp             TCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCS
T ss_pred             CCCCCCEEECCCCCC---CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCC
Confidence            455555555555543   1233323444455555555555554 22 223444555555555555554 33344444555


Q ss_pred             EEeCCCCCCC
Q 022897          248 ALDLSWNNIN  257 (290)
Q Consensus       248 ~L~l~~n~l~  257 (290)
                      .|++++|.+.
T Consensus       199 ~l~L~~Np~~  208 (290)
T 1p9a_G          199 FAFLHGNPWL  208 (290)
T ss_dssp             EEECCSCCBC
T ss_pred             eEEeCCCCcc
Confidence            5555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=191.24  Aligned_cols=196  Identities=25%  Similarity=0.309  Sum_probs=123.3

Q ss_pred             ccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh--ccCCCCCCEEEccCCCCCCC
Q 022897           86 LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        86 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~  163 (290)
                      .+.+..++++++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..|..  +..+++|++|++++|.+++.
T Consensus        63 ~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A           63 TIDKEAFRNLPNLRILDLGSSKIYFLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             EECTTTTSSCTTCCEEECTTCCCCEECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCcccCHh----HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence            34456677888888888888888777665    7777888888888888877655554  67778888888888877765


Q ss_pred             cchhhcccCCCCCeeeCCCCCCCCCCccchhhh--------------------------cc-------------------
Q 022897          164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGL--------------------------AN-------------------  198 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--------------------------~~-------------------  198 (290)
                      .++..+..+++|++|++++|.+...  .+. .+                          ..                   
T Consensus       139 ~~~~~~~~L~~L~~L~Ls~N~i~~~--~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          139 YLHPSFGKLNSLKSIDFSSNQIFLV--CEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG  215 (844)
T ss_dssp             CCCGGGGTCSSCCEEEEESSCCCCC--CSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred             ccchhHhhCCCCCEEECCCCcCCee--CHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence            5544677777777777777765211  110 00                          00                   


Q ss_pred             -------------------------------------------------CCCccEEEcCCCCCC--CCcCCCCCCCCcEE
Q 022897          199 -------------------------------------------------LTNLKELDLRGCGIT--TSQGLADLPNLKTL  227 (290)
Q Consensus       199 -------------------------------------------------~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L  227 (290)
                                                                       .++|+.|++++|.+.  .+..+..+++|+.|
T Consensus       216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  295 (844)
T 3j0a_A          216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL  295 (844)
T ss_dssp             SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred             CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence                                                             123444444444444  33445556666666


Q ss_pred             EccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          228 DLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       228 ~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++++|.+++  +..+..+++|++|++++|.+++..|.. +..+++|++|++++|+++++++..|
T Consensus       296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~  358 (844)
T 3j0a_A          296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTF  358 (844)
T ss_dssp             EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS-CSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred             ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH-hcCCCCCCEEECCCCCCCccChhhh
Confidence            666666665  344566666666666666666433433 6666666666776666666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.1e-21  Score=161.26  Aligned_cols=178  Identities=24%  Similarity=0.222  Sum_probs=151.9

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ...++++++++.++..+.     .+.  +.+++|++++|.+.+..+..+..+++|++|++++|.+++. ++..+..+++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~-----~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L   85 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPS-----GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTEL   85 (251)
T ss_dssp             GGGTEEECTTCCCSSCCS-----CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC
T ss_pred             CCCeEEecCCCCccccCC-----CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcC
Confidence            356789999999886543     232  6899999999999988888899999999999999999875 44578899999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC-c-cccccCCCCCEEeC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT-I-QGLAKLKNLEALDL  251 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l  251 (290)
                      ++|++++|.+  . .++...+..+++|++|++++|.++ . +..+..+++|++|++++|.+++ + ..+..+++|++|+|
T Consensus        86 ~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  162 (251)
T 3m19_A           86 GTLGLANNQL--A-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL  162 (251)
T ss_dssp             CEEECTTSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcc--c-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence            9999999996  3 455547889999999999999998 3 3457889999999999999999 3 35889999999999


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      ++|.++ .++...+..+++|++|+|++|++++..
T Consensus       163 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          163 STNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             CSSCCS-CCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             CCCcCC-ccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            999999 455544899999999999999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.3e-21  Score=162.61  Aligned_cols=191  Identities=26%  Similarity=0.316  Sum_probs=155.9

Q ss_pred             CCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCC
Q 022897           52 DWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS  122 (290)
Q Consensus        52 ~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  122 (290)
                      .|..+.|.....         .++.++++++         .+..+++..+..+++|++|++++|.++...+.    .|..
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~----~~~~   83 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSN---------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG----IFKE   83 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCTTCSEEECCSS---------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT----TTSS
T ss_pred             CCCEEEccCCCCCccCCCCCCCCCEEECcCC---------CCCeeCHHHhcCCCCCCEEECCCCccCeeChh----hhcC
Confidence            578899964221         2333334333         34555666788999999999999999877665    6788


Q ss_pred             CCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCc
Q 022897          123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL  202 (290)
Q Consensus       123 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  202 (290)
                      +++|++|++++|.+....+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+   ..++...+..+++|
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNEL---QSLPKGVFDKLTSL  159 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcC---CccCHhHccCCccc
Confidence            99999999999999987777888999999999999999865 445788999999999999996   34555468899999


Q ss_pred             cEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCc
Q 022897          203 KELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGS  259 (290)
Q Consensus       203 ~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~  259 (290)
                      ++|++++|.++  .+..+..+++|++|++++|.+++  +..+..+++|+.|++++|.+...
T Consensus       160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            99999999998  34468899999999999999998  33588899999999999998743

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=1e-21  Score=166.34  Aligned_cols=195  Identities=31%  Similarity=0.342  Sum_probs=162.3

Q ss_pred             cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch
Q 022897           62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL  141 (290)
Q Consensus        62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  141 (290)
                      ..+++.+++.++.    +     ..+  ..+..+++|++|++++|.+.+..      .+..+++|++|++++|.+.+.  
T Consensus        40 l~~L~~L~l~~~~----i-----~~l--~~~~~l~~L~~L~L~~n~i~~~~------~~~~l~~L~~L~L~~n~l~~~--  100 (308)
T 1h6u_A           40 LDGITTLSAFGTG----V-----TTI--EGVQYLNNLIGLELKDNQITDLA------PLKNLTKITELELSGNPLKNV--  100 (308)
T ss_dssp             HHTCCEEECTTSC----C-----CCC--TTGGGCTTCCEEECCSSCCCCCG------GGTTCCSCCEEECCSCCCSCC--
T ss_pred             cCCcCEEEeeCCC----c-----cCc--hhhhccCCCCEEEccCCcCCCCh------hHccCCCCCEEEccCCcCCCc--
Confidence            3456777777765    1     122  24677899999999999998753      278899999999999999863  


Q ss_pred             hhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCC
Q 022897          142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL  221 (290)
Q Consensus       142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l  221 (290)
                      +.+..+++|++|++++|.+++. +  .+..+++|++|++++|.+   ..++  .+..+++|++|++++|.++....+..+
T Consensus       101 ~~~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l---~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l  172 (308)
T 1h6u_A          101 SAIAGLQSIKTLDLTSTQITDV-T--PLAGLSNLQVLYLDLNQI---TNIS--PLAGLTNLQYLSIGNAQVSDLTPLANL  172 (308)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC-G--GGTTCTTCCEEECCSSCC---CCCG--GGGGCTTCCEEECCSSCCCCCGGGTTC
T ss_pred             hhhcCCCCCCEEECCCCCCCCc-h--hhcCCCCCCEEECCCCcc---CcCc--cccCCCCccEEEccCCcCCCChhhcCC
Confidence            4688999999999999999873 2  488999999999999996   3344  378999999999999999844448899


Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      ++|++|++++|.+++.+.+..+++|++|++++|.+++ +++  +..+++|++|++++|++++.+.
T Consensus       173 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          173 SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeeecCCe
Confidence            9999999999999996669999999999999999994 553  7889999999999999988544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.6e-22  Score=160.32  Aligned_cols=175  Identities=23%  Similarity=0.221  Sum_probs=143.6

Q ss_pred             CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCC
Q 022897           95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY  174 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  174 (290)
                      .++|++|++++|.+++..+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|.+++. ++..+..+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~  101 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQ  101 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred             CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccC
Confidence            35799999999999877665    678999999999999999977667788999999999999999854 4456789999


Q ss_pred             CCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCC
Q 022897          175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLS  252 (290)
Q Consensus       175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~  252 (290)
                      |++|++++|.+  . .++...+..+++|++|++++|.++ . +..+..+++|++|++++|.+..     .++.|+.|+++
T Consensus       102 L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~L~~~  173 (208)
T 2o6s_A          102 LKELALNTNQL--Q-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEW  173 (208)
T ss_dssp             CCEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----CTTTTHHHHHH
T ss_pred             CCEEEcCCCcC--c-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----CCCCHHHHHHH
Confidence            99999999986  3 455546788999999999999998 3 3457889999999999997764     45688999999


Q ss_pred             CCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897          253 WNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       253 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      .|.++|.+|.. ++.++.    ++..|...+.++.
T Consensus       174 ~n~~~g~ip~~-~~~l~~----~~~~C~~~~~~~~  203 (208)
T 2o6s_A          174 INKHSGVVRNS-AGSVAP----DSAKCSGSGKPVR  203 (208)
T ss_dssp             HHHCTTTBBCT-TSSBCT----TCSBBTTTCCBGG
T ss_pred             HHhCCceeecc-CccccC----CccccccCCCcce
Confidence            99999999987 776654    5555665555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.2e-22  Score=182.40  Aligned_cols=202  Identities=25%  Similarity=0.252  Sum_probs=132.0

Q ss_pred             cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-
Q 022897           64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-  142 (290)
Q Consensus        64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-  142 (290)
                      +++.++++++.         +..+.+..+..+++|++|++++|.+++..+      +..+++|++|++++|.+++..+. 
T Consensus        35 ~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~~~~   99 (487)
T 3oja_A           35 NVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLVGP   99 (487)
T ss_dssp             GCCEEECCSSC---------CCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEEECT
T ss_pred             CccEEEeeCCc---------CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCCCCC
Confidence            56666666655         223334456667777777777777765432      45556666666666555421110 


Q ss_pred             ---------------hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhh-ccCCCccEEE
Q 022897          143 ---------------YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGL-ANLTNLKELD  206 (290)
Q Consensus       143 ---------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~~~L~~L~  206 (290)
                                     ....+++|++|++++|.+++..+ ..+..+++|++|++++|.+  .+..+. .+ ..+++|++|+
T Consensus       100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~-~l~~~l~~L~~L~  175 (487)
T 3oja_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEI--DTVNFA-ELAASSDTLEHLN  175 (487)
T ss_dssp             TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCC--CEEEGG-GGGGGTTTCCEEE
T ss_pred             CcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCC--CCcChH-HHhhhCCcccEEe
Confidence                           01234667777777777765433 3566777888888888876  444444 34 3677888888


Q ss_pred             cCCCCCCCCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc-cc
Q 022897          207 LRGCGITTSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT-TI  284 (290)
Q Consensus       207 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~-~~  284 (290)
                      |++|.++..+....+++|++|++++|.+++ ++.+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|++. +.
T Consensus       176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCBCHHH
T ss_pred             cCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchh-hccCCCCCEEEcCCCCCcCcc
Confidence            888887733444567788888888888887 566777888888888888887 46766 777788888888888877 44


Q ss_pred             cc
Q 022897          285 QG  286 (290)
Q Consensus       285 ~~  286 (290)
                      +|
T Consensus       254 ~~  255 (487)
T 3oja_A          254 LR  255 (487)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=1.7e-23  Score=193.91  Aligned_cols=192  Identities=14%  Similarity=0.218  Sum_probs=117.1

Q ss_pred             CCcCC--CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCC-CchhhccCC------CCCCEEEccCC
Q 022897           89 MSLFH--PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FND-SILPYLNTL------TSLTTLILYSN  158 (290)
Q Consensus        89 ~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n  158 (290)
                      +..++  ++++|++|++++|.+.+.+|.    .+.++++|++|++++|. +++ .+|..++.+      ++|++|++++|
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence            34455  677777777777777776665    66777777777777776 666 566666554      67777777777


Q ss_pred             CCCCCcch-hhcccCCCCCeeeCCCCCCCCCCccc----------------------hhhhccCCC-ccEEEcCCCCCC-
Q 022897          159 SIEGSGTM-QGLANLRYLQVLDLSWNENITSGSLT----------------------RLGLANLTN-LKELDLRGCGIT-  213 (290)
Q Consensus       159 ~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~----------------------~~~~~~~~~-L~~L~l~~n~l~-  213 (290)
                      .++ .++. ..+..+++|++|++++|.+  .+.+|                      . .+..+++ |++|++++|.++ 
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l--~g~ip~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~  391 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQL--EGKLPAFGSEIKLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKY  391 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCC--EEECCCCEEEEEESEEECCSSEEEECCT-TSEEECTTCCEEECCSSCCSS
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcC--ccchhhhCCCCCCCEEECCCCccccccH-hhhhhcccCcEEEccCCcCcc
Confidence            766 3331 1566666666666666665  33444                      2 3444444 555555555554 


Q ss_pred             CCcCCCCCC--CCcEEEccCCCCCC--ccccc-------cCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897          214 TSQGLADLP--NLKTLDLRDCGITT--IQGLA-------KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT  282 (290)
Q Consensus       214 ~~~~~~~l~--~L~~L~l~~n~l~~--~~~l~-------~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  282 (290)
                      +|..+..+.  +|++|++++|.+++  +..+.       .+++|++|++++|.++ .+|...+..+++|++|+|++|+++
T Consensus       392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            444443333  55666666665555  33344       4556666777777666 566554556677777777777777


Q ss_pred             ccccccC
Q 022897          283 TIQGKIF  289 (290)
Q Consensus       283 ~~~~~~f  289 (290)
                      .+++..|
T Consensus       471 ~i~~~~~  477 (636)
T 4eco_A          471 EIPKNSL  477 (636)
T ss_dssp             BCCSSSS
T ss_pred             CcCHHHh
Confidence            5555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=9.3e-24  Score=179.25  Aligned_cols=180  Identities=23%  Similarity=0.258  Sum_probs=148.9

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhc--CCCCCCcEEECCCCcCCCCchhhccCC-----CCCCEEEccCCCCCCCcch
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSF--GSLKQLKILDLGCNFFNDSILPYLNTL-----TSLTTLILYSNSIEGSGTM  166 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~  166 (290)
                      .+++|++|++++|.+++..+.    .+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+++. ++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~  166 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPP----PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF-SC  166 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCC----CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC-CT
T ss_pred             CcCCccEEEccCCcccchhHH----HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc-hH
Confidence            588999999999999987776    44  8899999999999999876 7777666     8999999999999875 43


Q ss_pred             hhcccCCCCCeeeCCCCCCCCCCc--cch-hhhccCCCccEEEcCCCCCCC----C-cCCCCCCCCcEEEccCCCCCC-c
Q 022897          167 QGLANLRYLQVLDLSWNENITSGS--LTR-LGLANLTNLKELDLRGCGITT----S-QGLADLPNLKTLDLRDCGITT-I  237 (290)
Q Consensus       167 ~~~~~l~~L~~L~l~~n~~~~~~~--~~~-~~~~~~~~L~~L~l~~n~l~~----~-~~~~~l~~L~~L~l~~n~l~~-~  237 (290)
                      ..+..+++|++|++++|.+  .+.  ++. ..+..+++|++|++++|.++.    + ..+..+++|++|++++|.+++ +
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPE--LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTT--CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             HHhccCCCCCEEECCCCCc--CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            5889999999999999986  443  232 123788999999999999872    1 233577899999999999998 3


Q ss_pred             --cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          238 --QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       238 --~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                        +.+..+++|++|++++|.++ .+|.. +.  ++|++|+|++|+|++.+
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~-~~--~~L~~L~Ls~N~l~~~p  290 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLK-QVPKG-LP--AKLSVLDLSYNRLDRNP  290 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCS-SCCSS-CC--SEEEEEECCSSCCCSCC
T ss_pred             chhhhhhcCCCCEEECCCCccC-hhhhh-cc--CCceEEECCCCCCCCCh
Confidence              45667899999999999998 78887 44  89999999999999983

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=2e-22  Score=185.87  Aligned_cols=184  Identities=24%  Similarity=0.210  Sum_probs=86.0

Q ss_pred             CCCCCCCcEEECCCCcccCcc--chhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897           92 FHPFEELQSLNLSDNWFRGFY--ENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL  169 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  169 (290)
                      +..+++|++|++++|.+++..  +.    .+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+...+
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~----~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  420 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF  420 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCH----HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred             hccCCCCCEEECcCCccCCCcchhh----hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence            445566666666666665442  22    34445555555555555442 334444455555555555554443332344


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCC
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLK  244 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~  244 (290)
                      ..+++|++|++++|.+  .+..+. .+..+++|++|++++|.++   .+..+..+++|++|++++|.+++  +..+..++
T Consensus       421 ~~l~~L~~L~l~~n~l--~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNT--KIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             TTCTTCCEEECTTSCC--EECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hccccCCEEECcCCCC--Cccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence            4445555555555543  222222 3444444444444444443   23344444444444444444444  23344444


Q ss_pred             CCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          245 NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       245 ~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      +|++|++++|.+++.+|.. +..+++|++|+|++|+++.+
T Consensus       498 ~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~  536 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFNRIETS  536 (606)
T ss_dssp             TCCEEECCSSCCSCEEGGG-TTTCTTCCEEECTTSCCCCE
T ss_pred             cCCEEECCCCcCCCcCHHH-ccCCCcCCEEECCCCcCccc
Confidence            4444444444444333333 44444444444444444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=7.8e-22  Score=184.26  Aligned_cols=198  Identities=24%  Similarity=0.296  Sum_probs=150.2

Q ss_pred             cccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC-
Q 022897           85 SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS-  163 (290)
Q Consensus        85 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-  163 (290)
                      ..+.+..+..+++|++|++++|.+.+..+..   .|..+++|++|++++|.+.+..+..+..+++|++|++++|.+... 
T Consensus       394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  470 (680)
T 1ziw_A          394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQ---EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD  470 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCEEECCSG---GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred             CeEChhhhhCCCCCCEEeCCCCcCccccCcc---cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence            3444566778888888888888887654421   677888888888888888777777777888888888888877531 


Q ss_pred             cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CC---------cCCCCCCCCcEEEccCCC
Q 022897          164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TS---------QGLADLPNLKTLDLRDCG  233 (290)
Q Consensus       164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~---------~~~~~l~~L~~L~l~~n~  233 (290)
                      ..+..+..+++|++|++++|.+  . .++...+..+++|++|++++|.++ .+         ..+..+++|++|++++|.
T Consensus       471 ~~p~~~~~l~~L~~L~Ls~N~l--~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~  547 (680)
T 1ziw_A          471 SSPSPFQPLRNLTILDLSNNNI--A-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG  547 (680)
T ss_dssp             CSSCTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred             cCCcccccCCCCCEEECCCCCC--C-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence            2234677888888888888885  3 455446788888888888888876 11         126778888888888888


Q ss_pred             CCC-c-cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          234 ITT-I-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       234 l~~-~-~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++. + ..+..+++|++|++++|.++ .+|...+..+++|+.|+|++|++++.++..|
T Consensus       548 l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          548 FDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             CCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence            887 3 34788888888888888888 5766667888888888888888888877643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=5.7e-22  Score=185.16  Aligned_cols=189  Identities=25%  Similarity=0.266  Sum_probs=99.9

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      ++++++|++|++++|.+....+.    .|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ ..+..
T Consensus        69 ~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~  143 (680)
T 1ziw_A           69 CQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQ  143 (680)
T ss_dssp             HHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSC
T ss_pred             HhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhhcc
Confidence            33444444444444444433332    34445555555555555544444444455555555555555443322 23444


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhh--ccCCCccEEEcCCCCCC--CCcCCCCC--------------------------
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGL--ANLTNLKELDLRGCGIT--TSQGLADL--------------------------  221 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~--~~~~~~~l--------------------------  221 (290)
                      +++|++|++++|.+  .+ ++...+  ..+++|++|++++|.++  .+..+..+                          
T Consensus       144 l~~L~~L~L~~n~l--~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~  220 (680)
T 1ziw_A          144 LENLQELLLSNNKI--QA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA  220 (680)
T ss_dssp             CTTCCEEECCSSCC--CC-BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHT
T ss_pred             cccCCEEEccCCcc--cc-cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhh
Confidence            55555555555553  21 221122  23355666666666554  22222211                          


Q ss_pred             -CCCcEEEccCCCCCC--ccccccCC--CCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          222 -PNLKTLDLRDCGITT--IQGLAKLK--NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       222 -~~L~~L~l~~n~l~~--~~~l~~~~--~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                       ++|++|++++|.+++  +..+..++  +|++|++++|.+++..|.. +..+++|++|++++|++++.+|..|
T Consensus       221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~  292 (680)
T 1ziw_A          221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSL  292 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTT
T ss_pred             hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhh
Confidence             345555566665555  33444443  4888888888887444444 7888888888888888888877655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=1.6e-21  Score=166.62  Aligned_cols=177  Identities=24%  Similarity=0.308  Sum_probs=129.6

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      +.++.|++++|.+++..+.    .|..+++|++|++++|.+++..|..+..+++|++|++++|.++. .+. .+  .++|
T Consensus        52 ~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~-~~--~~~L  123 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPE-KM--PKTL  123 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCS-SC--CTTC
T ss_pred             CCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cCh-hh--cccc
Confidence            6899999999999988776    78999999999999999998889999999999999999999874 232 22  2799


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC----CCcCCCCCCCCcEEEccCCCCCC---------------
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT----TSQGLADLPNLKTLDLRDCGITT---------------  236 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l~~---------------  236 (290)
                      ++|++++|.+   ..++...+..+++|++|++++|.+.    .+..+..+++|++|++++|.++.               
T Consensus       124 ~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~  200 (330)
T 1xku_A          124 QELRVHENEI---TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD  200 (330)
T ss_dssp             CEEECCSSCC---CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECT
T ss_pred             cEEECCCCcc---cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECC
Confidence            9999999996   3455557899999999999999885    34455666666666666665554               


Q ss_pred             --------ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          237 --------IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       237 --------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                              +..+..+++|+.|++++|.+++ ++...+..+++|++|+|++|+++.+
T Consensus       201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l  255 (330)
T 1xku_A          201 GNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVKV  255 (330)
T ss_dssp             TSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCCcCccC
Confidence                    2334445555555555555552 2222255555555555555555533

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=7.4e-23  Score=174.06  Aligned_cols=203  Identities=25%  Similarity=0.224  Sum_probs=139.0

Q ss_pred             cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-
Q 022897           64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-  142 (290)
Q Consensus        64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-  142 (290)
                      .++.++++++.         +..+.+..+..+++|++|++++|.+.+..      .+..+++|++|++++|.+++..+. 
T Consensus        35 ~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~l~~L~~L~Ls~n~l~~l~~~~   99 (317)
T 3o53_A           35 NVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNVLYETL------DLESLSTLRTLDLNNNYVQELLVGP   99 (317)
T ss_dssp             GCSEEECTTSC---------CCCCCHHHHTTCTTCCEEECTTSCCEEEE------EETTCTTCCEEECCSSEEEEEEECT
T ss_pred             CCCEEECcCCc---------cCcCCHHHhhCCCcCCEEECCCCcCCcch------hhhhcCCCCEEECcCCccccccCCC
Confidence            46666666655         33344456778889999999999887654      267788888888888876532110 


Q ss_pred             ---------------hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEc
Q 022897          143 ---------------YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL  207 (290)
Q Consensus       143 ---------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l  207 (290)
                                     ....+++|++|++++|.+++. ++..+..+++|++|++++|.+  .+..+......+++|++|++
T Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCC--CEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCC--CcccHHHHhhccCcCCEEEC
Confidence                           011245566666666666543 223566677788888888775  33223312346778888888


Q ss_pred             CCCCCCCCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc-ccc
Q 022897          208 RGCGITTSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT-TIQ  285 (290)
Q Consensus       208 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~-~~~  285 (290)
                      ++|.++..+....+++|++|++++|.+++ ++.+..+++|++|++++|.++ .+|.. +..+++|++|++++|+++ +.+
T Consensus       177 ~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~-~~~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCCBHHHH
T ss_pred             CCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhH-hhcCCCCCEEEccCCCccCcCH
Confidence            88888733444457888888888888887 556778888888888888887 67776 777888888888888887 444


Q ss_pred             c
Q 022897          286 G  286 (290)
Q Consensus       286 ~  286 (290)
                      |
T Consensus       255 ~  255 (317)
T 3o53_A          255 R  255 (317)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3.5e-22  Score=163.08  Aligned_cols=183  Identities=17%  Similarity=0.178  Sum_probs=152.8

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCc-ccCccchhhhhhcCCCCCCcEEECCC-CcCCCCchhhccCCCCCCEEEccCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNW-FRGFYENKAYDSFGSLKQLKILDLGC-NFFNDSILPYLNTLTSLTTLILYSNSIE  161 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~  161 (290)
                      +..++...+..+++|++|++++|. ++...+.    .|..+++|++|++++ |.++...+..|..+++|++|++++|.++
T Consensus        43 l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~  118 (239)
T 2xwt_C           43 LRTIPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK  118 (239)
T ss_dssp             CSEECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred             ceEECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence            455666678899999999999997 8877665    788999999999998 9998766778899999999999999998


Q ss_pred             CCcchhhcccCCCCC---eeeCCCC-CCCCCCccchhhhccCCCcc-EEEcCCCCCC-CCcCCCCCCCCcEEEccCCC-C
Q 022897          162 GSGTMQGLANLRYLQ---VLDLSWN-ENITSGSLTRLGLANLTNLK-ELDLRGCGIT-TSQGLADLPNLKTLDLRDCG-I  234 (290)
Q Consensus       162 ~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l  234 (290)
                      + .+  .+..+++|+   +|++++| .   ...++...+..+++|+ +|++++|.++ ++......++|++|++++|+ +
T Consensus       119 ~-lp--~~~~l~~L~~L~~L~l~~N~~---l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          119 M-FP--DLTKVYSTDIFFILEITDNPY---MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL  192 (239)
T ss_dssp             S-CC--CCTTCCBCCSEEEEEEESCTT---CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTC
T ss_pred             c-cc--ccccccccccccEEECCCCcc---hhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCc
Confidence            7 33  277788888   9999999 6   4566665788999999 9999999998 55444444899999999995 8


Q ss_pred             CC--ccccccC-CCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCC
Q 022897          235 TT--IQGLAKL-KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG  280 (290)
Q Consensus       235 ~~--~~~l~~~-~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~  280 (290)
                      +.  +..+..+ ++|+.|++++|.++ .+|..   .+++|+.|+++++.
T Consensus       193 ~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred             ccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence            88  4567888 99999999999998 67754   57899999998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=2.4e-21  Score=177.21  Aligned_cols=91  Identities=23%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             ccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC----ccccccCCCCCEEeCCCCCCCCcccccccCCCCC
Q 022897          197 ANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT----IQGLAKLKNLEALDLSWNNINGSLESQGLADLPN  270 (290)
Q Consensus       197 ~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~----~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~  270 (290)
                      ..+++|++|++++|.++  .+..+..+++|++|++++|.+++    +..+..+++|++|++++|.+++.+|...+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            34456666777777666  45566677777777777777765    2346667777777777777775566554566666


Q ss_pred             CCEEecCCCCCcccccc
Q 022897          271 LKILDLRDCGMTTIQGK  287 (290)
Q Consensus       271 L~~L~L~~n~l~~~~~~  287 (290)
                      |++|++++|++++.+|.
T Consensus       430 L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             CCEEECCSSCCCGGGGS
T ss_pred             CCEEECCCCCCCcchhh
Confidence            66666666666655444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=177.05  Aligned_cols=92  Identities=18%  Similarity=0.182  Sum_probs=65.8

Q ss_pred             ccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC----ccccccCCCCCEEeCCCCCCCCcccccccCCCCC
Q 022897          197 ANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT----IQGLAKLKNLEALDLSWNNINGSLESQGLADLPN  270 (290)
Q Consensus       197 ~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~----~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~  270 (290)
                      ..+++|++|++++|.++  .+..+..+++|++|++++|.+++    +..+..+++|++|++++|.+++.+|...+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            45567777777777776  46667777788888888888776    2446777888888888888876577655666777


Q ss_pred             CCEEecCCCCCccccccc
Q 022897          271 LKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       271 L~~L~L~~n~l~~~~~~~  288 (290)
                      |++|++++|++++..|..
T Consensus       401 L~~L~Ls~N~l~~~~~~~  418 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRC  418 (520)
T ss_dssp             CCEEECCSSCCCGGGGGS
T ss_pred             CCEEECcCCCCCcchhhh
Confidence            777777777776665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=2.6e-21  Score=165.57  Aligned_cols=195  Identities=23%  Similarity=0.256  Sum_probs=145.8

Q ss_pred             ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897           84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS  163 (290)
Q Consensus        84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (290)
                      +..+.+..+..+++|++|++++|.+......     +.  ++|++|++++|.+....+..+..+++|++|++++|.++..
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  162 (332)
T 2ft3_A           90 ISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-----LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS  162 (332)
T ss_dssp             CCEECGGGSTTCTTCCEEECCSSCCCSCCSS-----CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred             cCccCHhHhhCcCCCCEEECCCCcCCccCcc-----cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence            3444556788889999999999988754332     22  6788888888888766666677888888888888877521


Q ss_pred             -cchhhcccC--------------------CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCC
Q 022897          164 -GTMQGLANL--------------------RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLAD  220 (290)
Q Consensus       164 -~~~~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~  220 (290)
                       ..+..+..+                    ++|++|++++|.+  . .++...+..+++|++|++++|.++  .+..+..
T Consensus       163 ~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i--~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI--Q-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             GSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC--C-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             CCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcC--C-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence             112223222                    4667777777765  2 233336888999999999999998  3446889


Q ss_pred             CCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCC------CCCCCEEecCCCCCc--ccccccC
Q 022897          221 LPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLAD------LPNLKILDLRDCGMT--TIQGKIF  289 (290)
Q Consensus       221 l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~f  289 (290)
                      +++|++|++++|.++. +..+..+++|++|++++|.++ .++...+..      .+.|+.|++++|++.  ++.|..|
T Consensus       240 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~  316 (332)
T 2ft3_A          240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF  316 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred             CCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCcccc
Confidence            9999999999999998 667899999999999999998 555544544      367899999999998  6677665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=7.2e-22  Score=182.09  Aligned_cols=187  Identities=22%  Similarity=0.218  Sum_probs=164.0

Q ss_pred             CCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCEEEccCCCCCCCcchh
Q 022897           89 MSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTTLILYSNSIEGSGTMQ  167 (290)
Q Consensus        89 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~  167 (290)
                      +..+..+++|++|++++|.+.+.. .    .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ .
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~~~-~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~  442 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAIIMS-A----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-G  442 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEEEC-C----CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT-T
T ss_pred             hhhhccCCcccEeECCCCccccch-h----hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch-h
Confidence            345678899999999999988754 3    78899999999999999988777 678899999999999999987544 4


Q ss_pred             hcccCCCCCeeeCCCCCCCCCCc-cchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--cccccc
Q 022897          168 GLANLRYLQVLDLSWNENITSGS-LTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAK  242 (290)
Q Consensus       168 ~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~  242 (290)
                      .+..+++|++|++++|.+  .+. ++. .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +..+..
T Consensus       443 ~~~~l~~L~~L~l~~n~l--~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSF--KDNTLSN-VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             TTTTCTTCCEEECTTCEE--GGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred             hhcCCCCCCEEECCCCcC--CCcchHH-hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence            788999999999999997  543 444 7889999999999999998  67789999999999999999999  678999


Q ss_pred             CCCCCEEeCCCCCCCCcccccccCCCC-CCCEEecCCCCCccccc
Q 022897          243 LKNLEALDLSWNNINGSLESQGLADLP-NLKILDLRDCGMTTIQG  286 (290)
Q Consensus       243 ~~~L~~L~l~~n~l~~~i~~~~l~~l~-~L~~L~L~~n~l~~~~~  286 (290)
                      +++|++|++++|.++ .+|.. +..++ +|++|++++|++....+
T Consensus       520 l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          520 LYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEccCCCcccCCc
Confidence            999999999999999 78888 77887 69999999999987544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.87  E-value=1e-20  Score=162.68  Aligned_cols=181  Identities=27%  Similarity=0.305  Sum_probs=117.3

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch--------------------hhccCCCCCC
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL--------------------PYLNTLTSLT  151 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------~~l~~l~~L~  151 (290)
                      +..+++|++|++++|......+     .+..+++|++|++++|.+.+..+                    ..+..+++|+
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~  202 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLS-----PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLH  202 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCG-----GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCC
T ss_pred             hccCCceeEEECCCCCCccccc-----chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccc
Confidence            5556666666666664333322     24445555555555554443222                    0134444444


Q ss_pred             EEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccC
Q 022897          152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRD  231 (290)
Q Consensus       152 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  231 (290)
                      +|++++|.+.+..   .+..+++|++|++++|.+   ..++  .+..+++|++|++++|.++..+.+..+++|++|++++
T Consensus       203 ~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l---~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          203 YFTAYVNQITDIT---PVANMTRLNSLKIGNNKI---TDLS--PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS  274 (347)
T ss_dssp             EEECCSSCCCCCG---GGGGCTTCCEEECCSSCC---CCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             eeecccCCCCCCc---hhhcCCcCCEEEccCCcc---CCCc--chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC
Confidence            4444444444321   155667777777777765   2233  2667778888888888777556677888888888888


Q ss_pred             CCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          232 CGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       232 n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      |.+++.+.+..+++|+.|++++|.+++..+.. +..+++|++|++++|++++.+|
T Consensus       275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          275 NQISDISVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCGG
T ss_pred             CccCCChhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccccC
Confidence            88888777888888888888888888555554 7788888888888888888776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=3.6e-22  Score=189.39  Aligned_cols=189  Identities=15%  Similarity=0.186  Sum_probs=157.6

Q ss_pred             CCcCCCCCCCcEEECCCCcccC-----------------ccchhhhhhcC--CCCCCcEEECCCCcCCCCchhhccCCCC
Q 022897           89 MSLFHPFEELQSLNLSDNWFRG-----------------FYENKAYDSFG--SLKQLKILDLGCNFFNDSILPYLNTLTS  149 (290)
Q Consensus        89 ~~~~~~~~~L~~L~l~~n~l~~-----------------~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~  149 (290)
                      +..++++++|+.|+|++|.+++                 .+|.    .++  .+++|++|+|++|.+.+.+|..+.++++
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE  516 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence            4568899999999999999998                 2444    666  9999999999999999999999999999


Q ss_pred             CCEEEccCCC-CCC-Ccchhhccc-------CCCCCeeeCCCCCCCCCCccch-hhhccCCCccEEEcCCCCCC-CCcCC
Q 022897          150 LTTLILYSNS-IEG-SGTMQGLAN-------LRYLQVLDLSWNENITSGSLTR-LGLANLTNLKELDLRGCGIT-TSQGL  218 (290)
Q Consensus       150 L~~L~l~~n~-~~~-~~~~~~~~~-------l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~-~~~~~  218 (290)
                      |++|++++|. +++ .+| ..+..       +++|++|++++|.+  . .+|. ..+..+++|++|++++|.++ +| .+
T Consensus       517 L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L--~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~  591 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYNNL--E-EFPASASLQKMVKLGLLDCVHNKVRHLE-AF  591 (876)
T ss_dssp             CCEEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSSCC--C-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CC
T ss_pred             CCEEECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCCcC--C-ccCChhhhhcCCCCCEEECCCCCcccch-hh
Confidence            9999999998 876 444 34444       45999999999997  3 6664 36889999999999999998 55 88


Q ss_pred             CCCCCCcEEEccCCCCCC-ccccccCCC-CCEEeCCCCCCCCcccccccCCCC--CCCEEecCCCCCccccccc
Q 022897          219 ADLPNLKTLDLRDCGITT-IQGLAKLKN-LEALDLSWNNINGSLESQGLADLP--NLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       219 ~~l~~L~~L~l~~n~l~~-~~~l~~~~~-L~~L~l~~n~l~~~i~~~~l~~l~--~L~~L~L~~n~l~~~~~~~  288 (290)
                      ..+++|++|++++|.++. +..+..+++ |+.|++++|.++ .+|.. +..++  +|+.|+|++|++++.+|..
T Consensus       592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCCccccc
Confidence            899999999999999988 667888888 999999999998 78865 65554  4888888888888877643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=6.5e-22  Score=177.68  Aligned_cols=185  Identities=20%  Similarity=0.216  Sum_probs=143.4

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchh----
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQ----  167 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----  167 (290)
                      ...+++|++|++++|.+.+..+.    .|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+..    
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~  103 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIET  103 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGG----GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             cccCCCccEEEeeCCcCCCCCHH----HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence            34566899999999999998776    88999999999999999986554  788899999988888775421110    


Q ss_pred             -----------hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCC-CCCCCcEEEccCCC
Q 022897          168 -----------GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLA-DLPNLKTLDLRDCG  233 (290)
Q Consensus       168 -----------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~-~l~~L~~L~l~~n~  233 (290)
                                 ....+++|+.|++++|.+  .+..+. .+..+++|++|++++|.++  .+..+. .+++|++|++++|.
T Consensus       104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l--~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKI--TMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEECCCSSCEEEECCSSCC--CSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCccccCCCCEEECCCCCC--CCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence                       112346677777777775  333333 6778888999999998887  455554 68889999999999


Q ss_pred             CCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897          234 ITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       234 l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      +++.+....+++|+.|+|++|.++ .+|+. +..+++|+.|+|++|.++++++.
T Consensus       181 l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~  232 (487)
T 3oja_A          181 IYDVKGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLVLIEKA  232 (487)
T ss_dssp             CCEEECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCCEECTT
T ss_pred             cccccccccCCCCCEEECCCCCCC-CCCHh-HcCCCCccEEEecCCcCcccchh
Confidence            888666667889999999999998 46666 77889999999999999986554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=178.64  Aligned_cols=186  Identities=21%  Similarity=0.208  Sum_probs=155.3

Q ss_pred             CCCCCCcEEECCCCcccCcc--chhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           93 HPFEELQSLNLSDNWFRGFY--ENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      ..+++|++|++++|.+.+..  +.    .+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+...+.
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQ----SDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEH----HHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             ccCCCCCEEeCcCCccCccccccc----cccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhh
Confidence            56788999999998887653  33    67788999999999998875444 4888999999999999988765545688


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCC
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKN  245 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~  245 (290)
                      .+++|++|++++|.+  .+..+. .+..+++|++|++++|.++   .|..+..+++|++|++++|.+++  +..+..+++
T Consensus       419 ~l~~L~~L~l~~n~l--~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          419 SLRNLIYLDISHTHT--RVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TCTTCCEEECTTSCC--EECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCEEeCcCCcc--cccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            899999999999986  444444 7888999999999999886   67888999999999999999998  567889999


Q ss_pred             CCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897          246 LEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       246 L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      |++|++++|.+++. ++..+..+++|++|++++|++++..|.
T Consensus       496 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999954 444488999999999999999988775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.86  E-value=2.6e-21  Score=184.73  Aligned_cols=145  Identities=25%  Similarity=0.250  Sum_probs=118.0

Q ss_pred             CCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCcc-chhhhhhcCCCCCCcEEE
Q 022897           52 DWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFY-ENKAYDSFGSLKQLKILD  130 (290)
Q Consensus        52 ~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~l~~l~~L~~L~  130 (290)
                      .|..|-+  ...+++.++|+++.         +..+.+..+..+++|++|++++|...+.+ +.    .|.++++|++|+
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~---------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~L~   79 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNY---------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRILD   79 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCC---------CCEECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCEEE
T ss_pred             CCCCCCC--CCCCcCEEECCCCc---------CCccChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCEEE
Confidence            5666665  34578888888866         34455677899999999999999665554 44    789999999999


Q ss_pred             CCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcch-hhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCC
Q 022897          131 LGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTM-QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG  209 (290)
Q Consensus       131 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~  209 (290)
                      |++|.+.+..|..|..+++|++|++++|.+++..+. ..+..+++|++|++++|.+  .+..+...+.++++|++|++++
T Consensus        80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l--~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI--RSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC--CCCCCCGGGGTCSSCCEEEEES
T ss_pred             CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc--cccccchhHhhCCCCCEEECCC
Confidence            999999988899999999999999999999875443 2388999999999999997  4333333789999999999999


Q ss_pred             CCCC
Q 022897          210 CGIT  213 (290)
Q Consensus       210 n~l~  213 (290)
                      |.++
T Consensus       158 N~i~  161 (844)
T 3j0a_A          158 NQIF  161 (844)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            9775

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.4e-20  Score=159.39  Aligned_cols=176  Identities=28%  Similarity=0.358  Sum_probs=152.2

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      ...+++|++|++++|.+... +     .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.   ..+..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~---~~~~~  105 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV---SAIAG  105 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC---GGGTT
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc---hhhcC
Confidence            34578999999999998764 2     57789999999999999986544  88999999999999999873   26889


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL  251 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l  251 (290)
                      +++|++|++++|.+  . .++  .+..+++|++|++++|.++....+..+++|++|++++|.+++.+.+..+++|+.|++
T Consensus       106 l~~L~~L~l~~n~l--~-~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l  180 (308)
T 1h6u_A          106 LQSIKTLDLTSTQI--T-DVT--PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA  180 (308)
T ss_dssp             CTTCCEEECTTSCC--C-CCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCCC--C-Cch--hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence            99999999999996  2 344  488999999999999999944458899999999999999999666999999999999


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      ++|.+++ ++.  +..+++|++|++++|++++.++
T Consensus       181 ~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          181 DDNKISD-ISP--LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             CSSCCCC-CGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             CCCccCc-Chh--hcCCCCCCEEEccCCccCcccc
Confidence            9999984 554  7789999999999999998875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=8.8e-21  Score=159.26  Aligned_cols=176  Identities=29%  Similarity=0.328  Sum_probs=142.3

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      ...+++|++|++++|.+... +     .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++  .+ .+..
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~-~l~~  110 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-----GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LS-SLKD  110 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GG-GGTT
T ss_pred             hhhcCcccEEEccCCCcccC-h-----hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Ch-hhcc
Confidence            34577889999999888765 2     46778899999999999886444  7888999999999998876  32 5888


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL  251 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l  251 (290)
                      +++|++|++++|.+.   .++  .+..+++|++|++++|.++....+..+++|++|++++|.+++...+..+++|+.|++
T Consensus       111 l~~L~~L~L~~n~i~---~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L  185 (291)
T 1h6t_A          111 LKKLKSLSLEHNGIS---DIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL  185 (291)
T ss_dssp             CTTCCEEECTTSCCC---CCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCcCC---CCh--hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEEC
Confidence            899999999999862   233  577888999999999988855778888999999999999988545888899999999


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      ++|.++ .++.  +..+++|+.|++++|+++..+.
T Consensus       186 ~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          186 SKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CSSCCC-BCGG--GTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCCcCC-CChh--hccCCCCCEEECcCCcccCCcc
Confidence            999988 4654  7888999999999998876544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=6.3e-20  Score=157.73  Aligned_cols=186  Identities=25%  Similarity=0.359  Sum_probs=138.7

Q ss_pred             CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897           90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL  169 (290)
Q Consensus        90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  169 (290)
                      ..+..+++|++|++++|.+.+..      .+..+++|++|++++|.....++. +..+++|++|++++|.+.+..   .+
T Consensus       104 ~~~~~l~~L~~L~l~~n~i~~~~------~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~---~~  173 (347)
T 4fmz_A          104 SALQNLTNLRELYLNEDNISDIS------PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT---PI  173 (347)
T ss_dssp             GGGTTCTTCSEEECTTSCCCCCG------GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCG---GG
T ss_pred             hHHcCCCcCCEEECcCCcccCch------hhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCch---hh
Confidence            45888999999999999998653      378899999999999976654444 788999999999999887642   26


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccch-----------------hhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCC
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTR-----------------LGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDC  232 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  232 (290)
                      ..+++|++|++++|.+.....+..                 ..+..+++|++|++++|.++....+..+++|++|++++|
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN  253 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             ccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC
Confidence            677888888888877532211000                 015566777777777777773333777788888888888


Q ss_pred             CCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897          233 GITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       233 ~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~  288 (290)
                      .+++.+.+..+++|++|++++|.+++ ++.  +..+++|++|++++|++++.+|+.
T Consensus       254 ~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          254 QISDINAVKDLTKLKMLNVGSNQISD-ISV--LNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             ccCCChhHhcCCCcCEEEccCCccCC-Chh--hcCCCCCCEEECcCCcCCCcChhH
Confidence            88777777788888888888888874 432  677888888888888888777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=7e-20  Score=163.15  Aligned_cols=173  Identities=21%  Similarity=0.198  Sum_probs=125.0

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      ++.+++|++|++++|.+++.       .+..+++|++|++++|.+++. +  +..+++|++|++++|.+++.    .+..
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l----~l~~  146 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI----DVSH  146 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC----CCTT
T ss_pred             cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee----cccc
Confidence            55667777777777777654       256677777777777777652 2  66777777777777777662    2566


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL  251 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l  251 (290)
                      +++|++|++++|..  .+.+   .+..+++|++|++++|.++..+ +..+++|++|++++|.+++. .+..+++|+.|++
T Consensus       147 l~~L~~L~l~~n~~--~~~~---~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~L  219 (457)
T 3bz5_A          147 NTQLTELDCHLNKK--ITKL---DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDC  219 (457)
T ss_dssp             CTTCCEEECTTCSC--CCCC---CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEEC
T ss_pred             CCcCCEEECCCCCc--cccc---ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee-ccccCCCCCEEEC
Confidence            77777777777754  3333   3567788888888888887333 77788888888888888876 3777888888888


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++|.+++ +|   +..+++|++|++++|++++.++..|
T Consensus       220 s~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l  253 (457)
T 3bz5_A          220 SSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTL  253 (457)
T ss_dssp             CSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred             cCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHC
Confidence            8888885 55   6678888888888888888776544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=170.13  Aligned_cols=161  Identities=24%  Similarity=0.270  Sum_probs=136.5

Q ss_pred             CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC-cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897          121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS-GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL  199 (290)
Q Consensus       121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  199 (290)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+++. ..+..+..+++|++|++++|.+  .+.++...+..+
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l--~~~l~~~~~~~l  398 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV--SYDEKKGDCSWT  398 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC--BCCGGGCSCCCC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC--CcccccchhccC
Confidence            6789999999999999988899999999999999999999862 1234688899999999999997  555776457888


Q ss_pred             CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEec
Q 022897          200 TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL  276 (290)
Q Consensus       200 ~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L  276 (290)
                      ++|++|++++|.++  .+..+.  ++|++|++++|.++. +..+..+++|++|++++|.++ .+|...+..+++|++|++
T Consensus       399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence            99999999999986  444443  799999999999998 666779999999999999999 687766888999999999


Q ss_pred             CCCCCccccc
Q 022897          277 RDCGMTTIQG  286 (290)
Q Consensus       277 ~~n~l~~~~~  286 (290)
                      ++|++++..+
T Consensus       476 ~~N~~~c~c~  485 (520)
T 2z7x_B          476 HTNPWDCSCP  485 (520)
T ss_dssp             CSSCBCCCHH
T ss_pred             cCCCCcccCC
Confidence            9999987543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=5.5e-20  Score=164.41  Aligned_cols=173  Identities=29%  Similarity=0.355  Sum_probs=108.8

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      .+++|++|++++|.+.+.  .    .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..   .+..++
T Consensus       219 ~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~  287 (466)
T 1o6v_A          219 ILTNLDELSLNGNQLKDI--G----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS---PLAGLT  287 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG---GGTTCT
T ss_pred             ccCCCCEEECCCCCcccc--h----hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc---cccCCC
Confidence            344455555555444432  1    34556666666666666654333  556666666666666665532   255666


Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCC
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSW  253 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~  253 (290)
                      +|++|++++|.+  . .++  .+..+++|++|++++|.++....+..+++|++|++++|.+++.+.+..+++|+.|++++
T Consensus       288 ~L~~L~L~~n~l--~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  362 (466)
T 1o6v_A          288 ALTNLELNENQL--E-DIS--PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH  362 (466)
T ss_dssp             TCSEEECCSSCC--S-CCG--GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             ccCeEEcCCCcc--c-Cch--hhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCC
Confidence            777777777664  2 233  25667777777777777763333666777777777777777766677777777777777


Q ss_pred             CCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          254 NNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       254 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      |.+++..|   +..+++|++|++++|++++.+
T Consensus       363 n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          363 NQISDLTP---LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             SCCCBCGG---GTTCTTCCEEECCCEEEECCC
T ss_pred             CccCccch---hhcCCCCCEEeccCCcccCCc
Confidence            77775444   566777777777777777743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=9.3e-21  Score=172.19  Aligned_cols=193  Identities=18%  Similarity=0.155  Sum_probs=153.7

Q ss_pred             CCCce-EeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEE
Q 022897           52 DWEGV-KCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD  130 (290)
Q Consensus        52 ~w~gv-~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~  130 (290)
                      .|.++ .|.  ..+++.++++++.    +     ..++...   +++|++|++++|.++...        ..+++|++|+
T Consensus        49 ~~~~l~~C~--~~~L~~L~Ls~n~----L-----~~lp~~l---~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~  106 (571)
T 3cvr_A           49 AVSLLKECL--INQFSELQLNRLN----L-----SSLPDNL---PPQITVLEITQNALISLP--------ELPASLEYLD  106 (571)
T ss_dssp             HHHHHHHHH--HTTCSEEECCSSC----C-----SCCCSCC---CTTCSEEECCSSCCSCCC--------CCCTTCCEEE
T ss_pred             hhhhccccc--cCCccEEEeCCCC----C-----CccCHhH---cCCCCEEECcCCCCcccc--------cccCCCCEEE
Confidence            48888 785  3478889999876    2     2233322   378999999999998543        2468999999


Q ss_pred             CCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCC
Q 022897          131 LGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC  210 (290)
Q Consensus       131 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n  210 (290)
                      +++|.+++ +|. +..  +|++|++++|.+++ ++.    .+++|++|++++|.+  . .+|.    .+++|++|++++|
T Consensus       107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l--~-~lp~----~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQL--T-MLPE----LPTSLEVLSVRNN  170 (571)
T ss_dssp             CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCC--S-CCCC----CCTTCCEEECCSS
T ss_pred             ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCcc--C-cCCC----cCCCcCEEECCCC
Confidence            99999987 666 654  99999999999987 332    689999999999997  3 3553    5789999999999


Q ss_pred             CCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCC-------CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897          211 GIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNL-------EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT  282 (290)
Q Consensus       211 ~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L-------~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  282 (290)
                      .++ +|. +.  ++|+.|++++|.|+..+.+..  +|       +.|+|++|.++ .+|.. +..+++|+.|+|++|+++
T Consensus       171 ~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          171 QLTFLPE-LP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT-HIPEN-ILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CCSCCCC-CC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC-CCCGG-GGGSCTTEEEECCSSSCC
T ss_pred             CCCCcch-hh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce-ecCHH-HhcCCCCCEEEeeCCcCC
Confidence            998 555 55  899999999999998433543  67       99999999999 78987 556999999999999999


Q ss_pred             ccccccC
Q 022897          283 TIQGKIF  289 (290)
Q Consensus       283 ~~~~~~f  289 (290)
                      +.+|..|
T Consensus       244 ~~~p~~l  250 (571)
T 3cvr_A          244 SRIRESL  250 (571)
T ss_dssp             HHHHHHH
T ss_pred             CcCHHHH
Confidence            9887654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=1.5e-19  Score=161.55  Aligned_cols=178  Identities=27%  Similarity=0.314  Sum_probs=104.7

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch--------------------hhccCCCCCC
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL--------------------PYLNTLTSLT  151 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------~~l~~l~~L~  151 (290)
                      +..+++|++|++++|.+.+..      .+..+++|++|++++|.+.+..+                    +.+..+++|+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~  246 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDIS------VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT  246 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             hccCCCCCEEECcCCcCCCCh------hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCC
Confidence            556666777777766665431      34455556666665555554332                    2233444444


Q ss_pred             EEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccC
Q 022897          152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRD  231 (290)
Q Consensus       152 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  231 (290)
                      +|++++|.+++..   .+..+++|++|++++|.+  . .++  .+..+++|++|++++|.++....+..+++|++|++++
T Consensus       247 ~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l--~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          247 DLDLANNQISNLA---PLSGLTKLTELKLGANQI--S-NIS--PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF  318 (466)
T ss_dssp             EEECCSSCCCCCG---GGTTCTTCSEEECCSSCC--C-CCG--GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred             EEECCCCccccch---hhhcCCCCCEEECCCCcc--C-ccc--cccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcC
Confidence            4444444444321   144455555555555553  1 222  2455666666666666666333356666777777777


Q ss_pred             CCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          232 CGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       232 n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      |.+++...+..+++|+.|++++|.+++ ++ . +..+++|++|++++|++++.+|
T Consensus       319 n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          319 NNISDISPVSSLTKLQRLFFYNNKVSD-VS-S-LANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             SCCSCCGGGGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCBCGG
T ss_pred             CcCCCchhhccCccCCEeECCCCccCC-ch-h-hccCCCCCEEeCCCCccCccch
Confidence            777664446667777777777777764 33 2 6778888888888888888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.3e-21  Score=167.51  Aligned_cols=180  Identities=23%  Similarity=0.279  Sum_probs=129.8

Q ss_pred             CCCCCCCcEEECCCCcccCc-cchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCC-CCCCCcchhhc
Q 022897           92 FHPFEELQSLNLSDNWFRGF-YENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSN-SIEGSGTMQGL  169 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~  169 (290)
                      +..+++|++|++++|.+.+. .+.    .+..+++|++|++++|.+++..+..+..+++|++|++++| .+++...+..+
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence            44678899999998887654 333    6778888999999888887777788888888999999888 56653344457


Q ss_pred             ccCCCCCeeeCCCC-CCCCCCc-cchhhhccCC-CccEEEcCCCC--CC---CCcCCCCCCCCcEEEccCCC-CCC--cc
Q 022897          170 ANLRYLQVLDLSWN-ENITSGS-LTRLGLANLT-NLKELDLRGCG--IT---TSQGLADLPNLKTLDLRDCG-ITT--IQ  238 (290)
Q Consensus       170 ~~l~~L~~L~l~~n-~~~~~~~-~~~~~~~~~~-~L~~L~l~~n~--l~---~~~~~~~l~~L~~L~l~~n~-l~~--~~  238 (290)
                      ..+++|++|++++| .+  .+. ++. .+..++ +|++|++++|.  ++   .+..+..+++|++|++++|. +++  +.
T Consensus       165 ~~~~~L~~L~l~~~~~l--~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  241 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDF--TEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  241 (336)
T ss_dssp             HHCTTCCEEECCCCTTC--CHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hcCCCCCEEcCCCCCCc--ChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence            77888888888888 65  222 343 577788 88888888884  33   34455667888888888887 554  66


Q ss_pred             ccccCCCCCEEeCCCCC-CCCcccccccCCCCCCCEEecCCC
Q 022897          239 GLAKLKNLEALDLSWNN-INGSLESQGLADLPNLKILDLRDC  279 (290)
Q Consensus       239 ~l~~~~~L~~L~l~~n~-l~~~i~~~~l~~l~~L~~L~L~~n  279 (290)
                      .+..+++|++|++++|. +....... +..+++|++|++++|
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence            77778888888888884 33221112 666777777777777

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=7.8e-21  Score=173.17  Aligned_cols=181  Identities=23%  Similarity=0.252  Sum_probs=159.0

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ++|++|++++|.+++..+.    .|..+++|++|++++|.+++..|..|..+++|++|++++|.+++. ++..+..+++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSSCCCEECSS----TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTC
T ss_pred             CCccEEECcCCccCccChh----hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCC
Confidence            6899999999999988776    789999999999999999988888899999999999999999875 44568999999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCC-C-C-CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEe
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI-T-T-SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALD  250 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~-~-~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~  250 (290)
                      ++|++++|.+... ..+. .+..+++|++|++++|.+ . . +..+..+++|++|++++|.+++  +..+..+++|++|+
T Consensus       101 ~~L~Ls~n~l~~~-~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  178 (549)
T 2z81_A          101 KYLNLMGNPYQTL-GVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT  178 (549)
T ss_dssp             CEEECTTCCCSSS-CSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             cEEECCCCccccc-chhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence            9999999997321 2343 688999999999999984 4 3 4678999999999999999998  77889999999999


Q ss_pred             CCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          251 LSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       251 l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      ++.|.+. .+|...+..+++|++|++++|++++.
T Consensus       179 l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          179 LHLSESA-FLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             EECSBST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             cccCccc-ccchhhHhhcccccEEEccCCccccc
Confidence            9999987 67776567799999999999999985

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=3.1e-21  Score=163.53  Aligned_cols=181  Identities=20%  Similarity=0.209  Sum_probs=140.3

Q ss_pred             CCCCcEEECCCCcccCccchhhhhhc--CCCCCCcEEECCCCcCCCCch----hhccCCCCCCEEEccCCCCCCCcchhh
Q 022897           95 FEELQSLNLSDNWFRGFYENKAYDSF--GSLKQLKILDLGCNFFNDSIL----PYLNTLTSLTTLILYSNSIEGSGTMQG  168 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (290)
                      +++|++|++++|.+.+..+.    .+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+. ++..
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~----~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~  164 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPP----LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQ  164 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCC----CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTS
T ss_pred             cCceeEEEeeCCEeccchhh----hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHH
Confidence            35699999999999887776    55  788999999999999886544    3445788999999999999764 4457


Q ss_pred             cccCCCCCeeeCCCCCCCCCCccch-hhhccCCCccEEEcCCCCCCC-Cc----CCCCCCCCcEEEccCCCCCC--cccc
Q 022897          169 LANLRYLQVLDLSWNENITSGSLTR-LGLANLTNLKELDLRGCGITT-SQ----GLADLPNLKTLDLRDCGITT--IQGL  240 (290)
Q Consensus       169 ~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~----~~~~l~~L~~L~l~~n~l~~--~~~l  240 (290)
                      +..+++|++|++++|.+.....++. ..+..+++|++|++++|.++. +.    .+..+++|++|++++|.+++  |+.+
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            8889999999999998621111222 123678899999999999872 22    24677899999999999988  4555


Q ss_pred             ccC---CCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897          241 AKL---KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       241 ~~~---~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      ..+   ++|++|++++|.++ .+|.. +.  ++|++|+|++|++++.
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~-~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE-QVPKG-LP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC-SCCSC-CC--SCCSCEECCSCCCCSC
T ss_pred             HhccCcCcCCEEECCCCCCC-chhhh-hc--CCCCEEECCCCcCCCC
Confidence            555   69999999999998 78876 43  7899999999999985

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=5.1e-20  Score=168.88  Aligned_cols=174  Identities=30%  Similarity=0.340  Sum_probs=112.1

Q ss_pred             CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897           93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL  172 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  172 (290)
                      ..+++|+.|++++|.+....      .+..+++|++|+|++|.+.+..+  +..+++|+.|+|++|.+.+.  + .+..+
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~-~l~~l  108 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--S-SLKDL  108 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--T-TSTTC
T ss_pred             hcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--h-hhccC
Confidence            34566677777776665431      35566777777777777665433  66677777777777776652  2 56666


Q ss_pred             CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCC
Q 022897          173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLS  252 (290)
Q Consensus       173 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~  252 (290)
                      ++|++|++++|.+.   .++  .+..+++|+.|+|++|.++....+..+++|+.|+|++|.+++...+..+++|+.|+|+
T Consensus       109 ~~L~~L~Ls~N~l~---~l~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          109 KKLKSLSLEHNGIS---DIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS  183 (605)
T ss_dssp             TTCCEEECTTSCCC---CCG--GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCEEEecCCCCC---CCc--cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECc
Confidence            77777777777652   232  4666677777777777776445566677777777777777763336667777777777


Q ss_pred             CCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          253 WNNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       253 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      +|.+++ ++.  +..+++|+.|+|++|++++.+
T Consensus       184 ~N~i~~-l~~--l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          184 KNHISD-LRA--LAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             SSCCCB-CGG--GTTCTTCSEEECCSEEEECCC
T ss_pred             CCCCCC-ChH--HccCCCCCEEEccCCcCcCCc
Confidence            777763 432  666777777777777766654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.84  E-value=5.1e-20  Score=168.36  Aligned_cols=161  Identities=25%  Similarity=0.275  Sum_probs=132.3

Q ss_pred             CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCc-chhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897          121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSG-TMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL  199 (290)
Q Consensus       121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  199 (290)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+++.. .+..+..+++|++|++++|.+  .+.++...+..+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l--~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL--NSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC--BSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC--CCccChhhhcCc
Confidence            67789999999999998888888889999999999999988632 234578889999999999987  444665467788


Q ss_pred             CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEec
Q 022897          200 TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL  276 (290)
Q Consensus       200 ~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L  276 (290)
                      ++|++|++++|.++  .+..+.  ++|++|++++|.++. +..+..+++|++|++++|.++ .+|...+..+++|+.|++
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred             ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence            99999999999986  333332  689999999999988 566778999999999999998 677766888999999999


Q ss_pred             CCCCCccccc
Q 022897          277 RDCGMTTIQG  286 (290)
Q Consensus       277 ~~n~l~~~~~  286 (290)
                      ++|++++..+
T Consensus       505 ~~N~~~c~c~  514 (562)
T 3a79_B          505 HDNPWDCTCP  514 (562)
T ss_dssp             CSCCBCCCHH
T ss_pred             cCCCcCCCcc
Confidence            9999987543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=1.5e-20  Score=171.90  Aligned_cols=203  Identities=24%  Similarity=0.297  Sum_probs=134.2

Q ss_pred             cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh
Q 022897           64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY  143 (290)
Q Consensus        64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  143 (290)
                      .++.++++++.         +..+.+..+..+++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..+..
T Consensus        29 ~l~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           29 STKNLDLSFNP---------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             SCCEEECCSCC---------CCEECTTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             cccEEEccCCc---------cCccChhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCccCHhh
Confidence            45566666655         3333445577778888888888877776555    6777788888888888777666677


Q ss_pred             ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCC-ccchhhhccCCCccEEEcCCCCCC--CCcCCCC
Q 022897          144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSG-SLTRLGLANLTNLKELDLRGCGIT--TSQGLAD  220 (290)
Q Consensus       144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~  220 (290)
                      |..+++|++|++++|.+++... ..+..+++|++|++++|.+  .+ .+|. .+..+++|++|++++|.++  .+..+..
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l--~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~  171 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLI--QSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCC--CCCCCCG-GGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred             hcCccccccccccccccccCCC-ccccccccccEEecCCCcc--ceecChh-hhcccCCCCEEeCcCCccceecHHHccc
Confidence            7777888888888877765322 2467777788888877775  32 3454 6777777777777777766  2333444


Q ss_pred             CCCC----cEEEccCCCCCC------------------------------------------------------------
Q 022897          221 LPNL----KTLDLRDCGITT------------------------------------------------------------  236 (290)
Q Consensus       221 l~~L----~~L~l~~n~l~~------------------------------------------------------------  236 (290)
                      +.+|    ++|++++|.+++                                                            
T Consensus       172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  251 (570)
T 2z63_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  251 (570)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred             hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence            4444    455555554433                                                            


Q ss_pred             -----------------------ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          237 -----------------------IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       237 -----------------------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                                             +..+..+++|++|++++|.+. .+|.. +..+ +|++|++++|.++..+.
T Consensus       252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-~~~~-~L~~L~l~~n~~~~l~~  321 (570)
T 2z63_A          252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-SYNF-GWQHLELVNCKFGQFPT  321 (570)
T ss_dssp             GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-CSCC-CCSEEEEESCBCSSCCB
T ss_pred             ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-hccC-CccEEeeccCcccccCc
Confidence                                   122344567788888887777 56665 5666 78888888888775544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.1e-19  Score=145.01  Aligned_cols=172  Identities=23%  Similarity=0.163  Sum_probs=140.9

Q ss_pred             cEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCee
Q 022897           99 QSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVL  178 (290)
Q Consensus        99 ~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  178 (290)
                      +.++.+++.+.....     .  -.++|++|++++|.+++..+..+..+++|++|++++|.+++. ++..+..+++|++|
T Consensus        10 ~~v~c~~~~l~~~p~-----~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L   81 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT-----G--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYL   81 (208)
T ss_dssp             TEEECCSSCCSSCCS-----C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CEEEecCCCccCCCC-----C--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEE
Confidence            455666666654432     2  246899999999999977777788999999999999999854 44567899999999


Q ss_pred             eCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCC
Q 022897          179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWN  254 (290)
Q Consensus       179 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n  254 (290)
                      ++++|.+  . .++...+..+++|++|++++|.++ . +..+..+++|++|++++|.+++  +..+..+++|++|++++|
T Consensus        82 ~Ls~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           82 NLSTNQL--Q-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             ECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             ECCCCcC--C-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            9999996  3 455546789999999999999998 3 4457899999999999999998  334788999999999999


Q ss_pred             CCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          255 NINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       255 ~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      .+.+        .+++|++|+++.|+++|.+|+.+
T Consensus       159 ~~~~--------~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          159 PWDC--------TCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             CBCC--------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             Ceec--------CCCCHHHHHHHHHhCCceeeccC
Confidence            7763        45789999999999999998754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=1.2e-18  Score=155.28  Aligned_cols=188  Identities=22%  Similarity=0.202  Sum_probs=157.9

Q ss_pred             cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch
Q 022897           62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL  141 (290)
Q Consensus        62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  141 (290)
                      ..+++.++++++.    +     ..++  .+..+++|++|++++|.+++.       .+..+++|++|++++|.+++. +
T Consensus        41 l~~L~~L~Ls~n~----l-----~~~~--~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~L~~L~Ls~N~l~~~-~  101 (457)
T 3bz5_A           41 LATLTSLDCHNSS----I-----TDMT--GIEKLTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTNL-D  101 (457)
T ss_dssp             HTTCCEEECCSSC----C-----CCCT--TGGGCTTCSEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSCC-C
T ss_pred             cCCCCEEEccCCC----c-----ccCh--hhcccCCCCEEEccCCcCCeE-------ccccCCCCCEEECcCCCCcee-e
Confidence            4567788888876    2     1221  477899999999999999875       367899999999999999874 3


Q ss_pred             hhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCC
Q 022897          142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL  221 (290)
Q Consensus       142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l  221 (290)
                        ++.+++|++|++++|.+++.    .+..+++|++|++++|.+  .+ +   .+..+++|++|++++|.......+..+
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l----~~~~l~~L~~L~l~~N~l--~~-l---~l~~l~~L~~L~l~~n~~~~~~~~~~l  169 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTL--TE-I---DVSHNTQLTELDCHLNKKITKLDVTPQ  169 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCC----CCTTCTTCCEEECTTSCC--SC-C---CCTTCTTCCEEECTTCSCCCCCCCTTC
T ss_pred             --cCCCCcCCEEECCCCcCCee----cCCCCCcCCEEECCCCcc--ce-e---ccccCCcCCEEECCCCCcccccccccC
Confidence              78999999999999999873    278899999999999997  33 3   367899999999999965533368889


Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      ++|++|++++|.+++.+ +..+++|+.|++++|.+++ ++   ++.+++|++|++++|++++++
T Consensus       170 ~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ip  228 (457)
T 3bz5_A          170 TQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEID  228 (457)
T ss_dssp             TTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC
T ss_pred             CcCCEEECCCCccceec-cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccccC
Confidence            99999999999999965 8889999999999999995 42   788999999999999999964

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=2.4e-21  Score=169.18  Aligned_cols=193  Identities=25%  Similarity=0.315  Sum_probs=101.4

Q ss_pred             CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhc----cCC---------CCCCEEEccCCC
Q 022897           93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL----NTL---------TSLTTLILYSNS  159 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l---------~~L~~L~l~~n~  159 (290)
                      ..+++|++|++++|.+.......++..+..+++|++|+|++|.++...+..+    ..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            3455555555555555543222222244555555555555555543222222    222         556666666665


Q ss_pred             CCCCcch---hhcccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEE
Q 022897          160 IEGSGTM---QGLANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLD  228 (290)
Q Consensus       160 ~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~  228 (290)
                      ++....+   ..+..+++|++|++++|.+...+  .+.+..+..+++|++|+|++|.++      ++..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            5422222   23445556666666666542111  011114455666666666666663      344555666666666


Q ss_pred             ccCCCCCC------cccc--ccCCCCCEEeCCCCCCCC----cccccccCCCCCCCEEecCCCCCcccc
Q 022897          229 LRDCGITT------IQGL--AKLKNLEALDLSWNNING----SLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       229 l~~n~l~~------~~~l--~~~~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      +++|.+++      +..+  ..+++|++|+|++|.+++    .+|......+++|++|++++|++++..
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            66666665      1233  226667777777776664    255552355667777777777776655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=4e-21  Score=164.46  Aligned_cols=191  Identities=20%  Similarity=0.218  Sum_probs=150.9

Q ss_pred             CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCC-cCCCC-chhhccCCCCCCEEEccCC-CCCCCcch
Q 022897           90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN-FFNDS-ILPYLNTLTSLTTLILYSN-SIEGSGTM  166 (290)
Q Consensus        90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~~~~~~~~  166 (290)
                      ..+..+++|++|++++|.+++..+.    .+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++...+
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence            3467889999999999998776655    7888999999999999 67653 6666888999999999999 88765445


Q ss_pred             hhcccCC-CCCeeeCCCCCC-CCCCccchhhhccCCCccEEEcCCCC-CC--CCcCCCCCCCCcEEEccCCC-CCC--cc
Q 022897          167 QGLANLR-YLQVLDLSWNEN-ITSGSLTRLGLANLTNLKELDLRGCG-IT--TSQGLADLPNLKTLDLRDCG-ITT--IQ  238 (290)
Q Consensus       167 ~~~~~l~-~L~~L~l~~n~~-~~~~~~~~~~~~~~~~L~~L~l~~n~-l~--~~~~~~~l~~L~~L~l~~n~-l~~--~~  238 (290)
                      ..+..++ +|++|++++|.+ ...+.++. .+..+++|++|++++|. ++  .+..+..+++|++|++++|. +..  ..
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  266 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL  266 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence            5788899 999999999952 11144555 67889999999999999 55  56678889999999999995 333  34


Q ss_pred             ccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          239 GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       239 ~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      .+..+++|+.|++++| ++...-.. +.  ..+..|++++|++++..|..+
T Consensus       267 ~l~~~~~L~~L~l~~~-i~~~~~~~-l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI-VPDGTLQL-LK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             GGGGCTTCCEEECTTS-SCTTCHHH-HH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             HHhcCCCCCEEeccCc-cCHHHHHH-HH--hhCcceEEecccCccccCCcc
Confidence            6888999999999999 54322222 21  346677899999999988764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.3e-19  Score=156.19  Aligned_cols=224  Identities=21%  Similarity=0.197  Sum_probs=133.9

Q ss_pred             CCCC-C-CCCCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCC
Q 022897           45 MPSD-C-CDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS  122 (290)
Q Consensus        45 ~~~~-~-c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  122 (290)
                      |+.. | | .|..|.|......-++-++........+....+..++...|..+++|++|+|++|.+.+.++..   .|.+
T Consensus         2 Cp~~~C~C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~   77 (350)
T 4ay9_X            2 CHHRICHC-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSN   77 (350)
T ss_dssp             CCCSSSEE-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCS
T ss_pred             CCCCccEe-eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhc
Confidence            5543 5 6 8999999643211111122111111112223355566666777888888888888776554431   5667


Q ss_pred             CCCCcE-EECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCC-
Q 022897          123 LKQLKI-LDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT-  200 (290)
Q Consensus       123 l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-  200 (290)
                      ++++++ +.+.+|.+....|..|..+++|++|++++|.+..... ..+....++..+++.++..  ...++...+..+. 
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~  154 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSF  154 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTT--CCEECTTSSTTSBS
T ss_pred             chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc-hhhcccchhhhhhhccccc--cccccccchhhcch
Confidence            777665 4455677776666777778888888888887765432 2344455666777755433  4445543445543 


Q ss_pred             CccEEEcCCCCCC-CCcCCCCCCCCcEEEccC-CCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEec
Q 022897          201 NLKELDLRGCGIT-TSQGLADLPNLKTLDLRD-CGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL  276 (290)
Q Consensus       201 ~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~-n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L  276 (290)
                      .++.|++++|+++ ++.......+|++|++++ |.++.  ...+..+++|++|++++|.++ .+|...   +.+|+.|.+
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~  230 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRA  230 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEEC
T ss_pred             hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhh
Confidence            5777788888777 555555566777777764 55655  234677777888888888777 566543   344445554


Q ss_pred             CCC
Q 022897          277 RDC  279 (290)
Q Consensus       277 ~~n  279 (290)
                      .++
T Consensus       231 l~~  233 (350)
T 4ay9_X          231 RST  233 (350)
T ss_dssp             TTC
T ss_pred             ccC
Confidence            433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=3.4e-20  Score=153.40  Aligned_cols=171  Identities=23%  Similarity=0.256  Sum_probs=101.1

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      .++..+++.++.++...      .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+   +..+++|
T Consensus        19 ~~l~~l~l~~~~i~~~~------~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L   87 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV------SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKL   87 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE------CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSC
T ss_pred             HHHHHHHhcCCCccccc------chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh---hccCCCC
Confidence            34455555555555432      23445666666666666653 33 45566666666666666655321   5666666


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN  255 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~  255 (290)
                      ++|++++|.+.   .++.  +.. ++|++|++++|.++..+.+..+++|++|++++|.+++.+.+..+++|+.|++++|.
T Consensus        88 ~~L~L~~N~l~---~l~~--~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           88 EELSVNRNRLK---NLNG--IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             CEEECCSSCCS---CCTT--CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSC
T ss_pred             CEEECCCCccC---CcCc--ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCc
Confidence            66666666642   2332  122 66666666666666444566666677777777766665566666667777777776


Q ss_pred             CCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          256 INGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       256 l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      +++.  .. +..+++|+.|++++|++++.+.
T Consensus       162 i~~~--~~-l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          162 ITNT--GG-LTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             CCBC--TT-STTCCCCCEEEEEEEEEECCCE
T ss_pred             Ccch--HH-hccCCCCCEEeCCCCcccCCcc
Confidence            6633  22 6666667777777766665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=1e-18  Score=141.58  Aligned_cols=157  Identities=25%  Similarity=0.234  Sum_probs=126.3

Q ss_pred             CCCCCCCCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCC
Q 022897           46 PSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQ  125 (290)
Q Consensus        46 ~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~  125 (290)
                      ....| +|.+|.|....  ++                   .++..   -.++|++|++++|.+.+..+.    .|..+++
T Consensus        15 ~~~~C-s~~~v~c~~~~--l~-------------------~ip~~---~~~~L~~L~Ls~n~i~~~~~~----~~~~l~~   65 (229)
T 3e6j_A           15 SQCSC-SGTTVDCRSKR--HA-------------------SVPAG---IPTNAQILYLHDNQITKLEPG----VFDSLIN   65 (229)
T ss_dssp             TTCEE-ETTEEECTTSC--CS-------------------SCCSC---CCTTCSEEECCSSCCCCCCTT----TTTTCTT
T ss_pred             CCCEE-eCCEeEccCCC--cC-------------------ccCCC---CCCCCCEEEcCCCccCccCHH----HhhCccC
Confidence            56678 99999996421  11                   11111   127899999999999988776    7889999


Q ss_pred             CcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEE
Q 022897          126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKEL  205 (290)
Q Consensus       126 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  205 (290)
                      |++|++++|.+....+..|..+++|++|++++|.+++. ++..+..+++|++|++++|.+   ..+|. .+..+++|++|
T Consensus        66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l---~~lp~-~~~~l~~L~~L  140 (229)
T 3e6j_A           66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKL---TELPR-GIERLTHLTHL  140 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC---CSCCT-TGGGCTTCSEE
T ss_pred             CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCcc---cccCc-ccccCCCCCEE
Confidence            99999999999876667788999999999999999864 445678899999999999996   36666 67889999999


Q ss_pred             EcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC
Q 022897          206 DLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       206 ~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~  236 (290)
                      ++++|.++ . +..+..+++|+.|++++|.+..
T Consensus       141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            99999988 3 3567888899999999998875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=6.6e-21  Score=166.33  Aligned_cols=214  Identities=21%  Similarity=0.217  Sum_probs=162.2

Q ss_pred             CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcc---cCccch---hhhhhcCCCCCCcEEECCCCcC
Q 022897           63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWF---RGFYEN---KAYDSFGSLKQLKILDLGCNFF  136 (290)
Q Consensus        63 ~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~---~~~~~l~~l~~L~~L~l~~n~l  136 (290)
                      ..++.++++++.    +...+...+ ...+..+++|++|++++|.+   .+.+|.   .+...+..+++|++|+|++|.+
T Consensus        32 ~~L~~L~L~~n~----i~~~~~~~l-~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           32 DSVKEIVLSGNT----IGTEAARWL-SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             SCCCEEECTTSE----ECHHHHHHH-HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             CCccEEECCCCC----CCHHHHHHH-HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            457788888876    322222222 13466789999999999644   333333   2334568899999999999999


Q ss_pred             CC----CchhhccCCCCCCEEEccCCCCCCCcc---hhhcccC---------CCCCeeeCCCCCCCCCCccch--hhhcc
Q 022897          137 ND----SILPYLNTLTSLTTLILYSNSIEGSGT---MQGLANL---------RYLQVLDLSWNENITSGSLTR--LGLAN  198 (290)
Q Consensus       137 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l---------~~L~~L~l~~n~~~~~~~~~~--~~~~~  198 (290)
                      ..    .++..+..+++|++|++++|.+++..+   ...+..+         ++|++|++++|.+.. ..++.  ..+..
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~  185 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWAKTFQS  185 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHHHHHHh
Confidence            87    467788899999999999999864322   1223334         899999999999721 33442  26778


Q ss_pred             CCCccEEEcCCCCCC------CCc-CCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCc----cc
Q 022897          199 LTNLKELDLRGCGIT------TSQ-GLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGS----LE  261 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~------~~~-~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~----i~  261 (290)
                      +++|++|++++|.++      ..+ .+..+++|++|++++|.++.      +..+..+++|++|+|++|.+++.    ++
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            899999999999988      233 78899999999999999963      56788999999999999999854    34


Q ss_pred             cccc--CCCCCCCEEecCCCCCcc
Q 022897          262 SQGL--ADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       262 ~~~l--~~l~~L~~L~L~~n~l~~  283 (290)
                      .. +  +.+++|++|+|++|++++
T Consensus       266 ~~-l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          266 DA-FSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HH-HHTCSSCCCCEEECCSSCCBH
T ss_pred             HH-HhhccCCCeEEEECcCCcCCH
Confidence            44 5  448999999999999998

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=6.6e-20  Score=155.82  Aligned_cols=186  Identities=22%  Similarity=0.256  Sum_probs=142.5

Q ss_pred             CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchh--
Q 022897           90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQ--  167 (290)
Q Consensus        90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--  167 (290)
                      ..+..+++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..+  +..+++|++|++++|.+++.....  
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L  101 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSI  101 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTC
T ss_pred             HHhccCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCc
Confidence            4455678999999999999988776    88999999999999999986544  889999999999999876421110  


Q ss_pred             -------------hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCC-CCCCCCcEEEccC
Q 022897          168 -------------GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGL-ADLPNLKTLDLRD  231 (290)
Q Consensus       168 -------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~-~~l~~L~~L~l~~  231 (290)
                                   ....+++|++|++++|.+  . .++...+..+++|++|++++|.++  .+..+ ..+++|++|++++
T Consensus       102 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          102 ETLHAANNNISRVSCSRGQGKKNIYLANNKI--T-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CEEECCSSCCSEEEECCCSSCEEEECCSSCC--C-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CEEECCCCccCCcCccccCCCCEEECCCCCC--C-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence                         112345677777777775  2 333336677888888888888887  33444 4678888888888


Q ss_pred             CCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          232 CGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       232 n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      |.+++.+....+++|++|++++|.++ .+|.. +..+++|++|+|++|+++++++
T Consensus       179 N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          179 NFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             SCCCEEECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCCEECT
T ss_pred             CcCcccccccccccCCEEECCCCcCC-cchhh-hcccCcccEEECcCCcccchhh
Confidence            88888655566888999999999988 56666 7788999999999999987654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=1e-18  Score=140.72  Aligned_cols=133  Identities=24%  Similarity=0.293  Sum_probs=112.4

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..|..|..+++|++|+|++|.++. ++...+..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence            5799999999999887766    78899999999999999998888899999999999999999985 354567889999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~  236 (290)
                      ++|++++|.+  . .++...+..+++|++|+|++|.++  .+..+..+++|++|++++|.+..
T Consensus       107 ~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          107 QLLLLNANKI--N-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCCC--C-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9999999986  3 343337888899999999999988  34457888899999999998765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=1.1e-18  Score=140.53  Aligned_cols=153  Identities=22%  Similarity=0.189  Sum_probs=117.5

Q ss_pred             CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897           98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ  176 (290)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  176 (290)
                      -+.+++++|.++..+.     .+  ...+++|++++|.+++..+ ..|..+++|++|++++|.+++. ++..+..+++|+
T Consensus        13 ~~~l~~s~n~l~~iP~-----~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~   84 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE-----HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVN   84 (220)
T ss_dssp             TTEEECCSSCCSSCCS-----CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CCEeEeCCCCcccCcc-----CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCC
Confidence            3588999988876533     23  2456899999998886544 3477889999999999988754 334788888999


Q ss_pred             eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCC
Q 022897          177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLS  252 (290)
Q Consensus       177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~  252 (290)
                      +|++++|.+  . .++...+..+++|++|++++|.++  .+..+..+++|++|++++|.+++  +..+..+++|+.|+++
T Consensus        85 ~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           85 EILLTSNRL--E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             EEECCSSCC--C-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcc--C-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            999998886  3 344446788888899999988888  46778888888888888888887  5567888888888888


Q ss_pred             CCCCCCccc
Q 022897          253 WNNINGSLE  261 (290)
Q Consensus       253 ~n~l~~~i~  261 (290)
                      +|.+.+..+
T Consensus       162 ~N~l~c~c~  170 (220)
T 2v70_A          162 ANPFNCNCY  170 (220)
T ss_dssp             SCCEECSGG
T ss_pred             CcCCcCCCc
Confidence            888876544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=3.4e-18  Score=138.50  Aligned_cols=153  Identities=22%  Similarity=0.187  Sum_probs=109.1

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ  176 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  176 (290)
                      ..+.++.+++.+...+.     .+  .++|++|++++|.+++..+..|..+++|++|++++|.++. ++...+..+++|+
T Consensus        20 s~~~v~c~~~~l~~ip~-----~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~   91 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPA-----GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLT   91 (229)
T ss_dssp             ETTEEECTTSCCSSCCS-----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             eCCEeEccCCCcCccCC-----CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcC
Confidence            45678888877765543     22  3778888888888887777778888888888888888854 3444567778888


Q ss_pred             eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCC
Q 022897          177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSW  253 (290)
Q Consensus       177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~  253 (290)
                      +|++++|.+   ..++...+..+++|++|++++|.++ +|..+..+++|++|++++|.++.  +..+..+++|+.|++++
T Consensus        92 ~L~Ls~N~l---~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           92 VLDLGTNQL---TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcC---CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            888888875   2344435677777888888877777 66666777777777777777776  23466677777777777


Q ss_pred             CCCCCcc
Q 022897          254 NNINGSL  260 (290)
Q Consensus       254 n~l~~~i  260 (290)
                      |.+.+..
T Consensus       169 N~~~c~c  175 (229)
T 3e6j_A          169 NPWDCEC  175 (229)
T ss_dssp             SCBCTTB
T ss_pred             CCccCCc
Confidence            7776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=2.8e-19  Score=141.48  Aligned_cols=151  Identities=19%  Similarity=0.285  Sum_probs=94.8

Q ss_pred             CCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897          122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN  201 (290)
Q Consensus       122 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  201 (290)
                      .+++|++|++++|.+. .++ .+..+++|++|++++|.++.  + ..+..+++|++|++++|.+  .+..+. .+..+++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~-~~l~~l~~L~~L~l~~n~l--~~~~~~-~l~~l~~  113 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--Y-NPISGLSNLERLRIMGKDV--TSDKIP-NLSGLTS  113 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--C-GGGTTCTTCCEEEEECTTC--BGGGSC-CCTTCTT
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--c-hhhhcCCCCCEEEeECCcc--CcccCh-hhcCCCC
Confidence            3455666666666665 333 45566666666666665543  2 2455666666777666665  322333 4566667


Q ss_pred             ccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCC-CCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCC
Q 022897          202 LKELDLRGCGIT--TSQGLADLPNLKTLDLRDCG-ITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD  278 (290)
Q Consensus       202 L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~  278 (290)
                      |++|++++|.++  .+..+..+++|++|++++|. ++..+.+..+++|++|++++|.+++ ++ . +..+++|++|++++
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~-l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-G-IEDFPKLNQLYAFS  190 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-T-GGGCSSCCEEEECB
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-H-hccCCCCCEEEeeC
Confidence            777777777666  35556667777777777776 6665567777788888888887773 44 2 66777888888888


Q ss_pred             CCCcc
Q 022897          279 CGMTT  283 (290)
Q Consensus       279 n~l~~  283 (290)
                      |++.+
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            87754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=2.5e-20  Score=161.36  Aligned_cols=217  Identities=21%  Similarity=0.217  Sum_probs=142.1

Q ss_pred             cEEeecccccccccccccccccccCCCcCCCCC-CCcEEECCCCcccCccchhhhhhcCCC-CCCcEEECCCCcCCCCch
Q 022897           64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFE-ELQSLNLSDNWFRGFYENKAYDSFGSL-KQLKILDLGCNFFNDSIL  141 (290)
Q Consensus        64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~  141 (290)
                      .++.++++++.    +...+...+ ...+..++ +|++|++++|.+++..+..+...+... ++|++|++++|.+++..+
T Consensus        23 ~L~~L~Ls~n~----l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           23 GVTSLDLSLNN----LYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TCCEEECTTSC----GGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CceEEEccCCC----CChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            47777887776    221111111 03455666 788888888888877666444444444 888888888888877666


Q ss_pred             hhcc----CC-CCCCEEEccCCCCCCCcchh---hccc-CCCCCeeeCCCCCCCCCC--ccchhhhccCC-CccEEEcCC
Q 022897          142 PYLN----TL-TSLTTLILYSNSIEGSGTMQ---GLAN-LRYLQVLDLSWNENITSG--SLTRLGLANLT-NLKELDLRG  209 (290)
Q Consensus       142 ~~l~----~l-~~L~~L~l~~n~~~~~~~~~---~~~~-l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~-~L~~L~l~~  209 (290)
                      ..+.    .+ ++|++|++++|.+++.....   .+.. .++|++|++++|.+...+  .++. .+...+ +|++|++++
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecC
Confidence            5443    34 78888888888887654321   1333 358888888888863322  2222 345554 888888888


Q ss_pred             CCCC--CC----cCCCCC-CCCcEEEccCCCCCC------cccccc-CCCCCEEeCCCCCCCCccc---ccccCCCCCCC
Q 022897          210 CGIT--TS----QGLADL-PNLKTLDLRDCGITT------IQGLAK-LKNLEALDLSWNNINGSLE---SQGLADLPNLK  272 (290)
Q Consensus       210 n~l~--~~----~~~~~l-~~L~~L~l~~n~l~~------~~~l~~-~~~L~~L~l~~n~l~~~i~---~~~l~~l~~L~  272 (290)
                      |.++  .+    ..+..+ ++|++|++++|.+++      +..+.. .++|++|++++|.+++..+   ...+..+++|+
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~  256 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ  256 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence            8886  22    233445 588889998888877      334444 3588899998888885433   12356778888


Q ss_pred             EEecCCCCCccccc
Q 022897          273 ILDLRDCGMTTIQG  286 (290)
Q Consensus       273 ~L~L~~n~l~~~~~  286 (290)
                      +|+|++|.+.++.+
T Consensus       257 ~L~L~~n~l~~i~~  270 (362)
T 3goz_A          257 TVYLDYDIVKNMSK  270 (362)
T ss_dssp             EEEEEHHHHTTCCH
T ss_pred             EEEeccCCccccCH
Confidence            99988888655443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=1.7e-18  Score=159.93  Aligned_cols=178  Identities=29%  Similarity=0.271  Sum_probs=146.2

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      +++++|+|++|.+++..+.    +|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++ .++..|..+++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence            4799999999999988776    89999999999999999997777789999999999999999985 344578999999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCC----C
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKN----L  246 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~----L  246 (290)
                      ++|++++|.+   ..++...++.+++|++|++++|.++   .+..+..+++|++|++++|.+++  +..+..+.+    .
T Consensus       127 ~~L~Ls~N~l---~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          127 QKLVAVETNL---ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             CEEECTTSCC---CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             CEEECCCCcC---CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence            9999999986   3455546899999999999999986   46777889999999999999988  444544333    4


Q ss_pred             CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897          247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       247 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      ..++++.|.+. .++.. ......+..+++.+|..+.
T Consensus       204 ~~~~ls~n~l~-~i~~~-~~~~~~~~~l~l~~n~~~~  238 (635)
T 4g8a_A          204 LSLDLSLNPMN-FIQPG-AFKEIRLHKLTLRNNFDSL  238 (635)
T ss_dssp             CEEECTTCCCC-EECTT-TTTTCEEEEEEEESCCSSH
T ss_pred             hhhhcccCccc-ccCcc-cccchhhhhhhhhcccccc
Confidence            57899999998 56665 3334456788888886653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=9.6e-19  Score=151.29  Aligned_cols=155  Identities=25%  Similarity=0.207  Sum_probs=104.4

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcC-CCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFG-SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY  174 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  174 (290)
                      +.++.|+|++|.+++..+.    .|. .+++|++|+|++|.+++..+..|..+++|++|+|++|.++.. ++..+..+++
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred             CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcC
Confidence            4578888888888776665    565 788888888888888766666777888888888888887643 3345677777


Q ss_pred             CCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcC-C---CCCCCCcEEEccCCCCCC--ccccccCCC--
Q 022897          175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQG-L---ADLPNLKTLDLRDCGITT--IQGLAKLKN--  245 (290)
Q Consensus       175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~---~~l~~L~~L~l~~n~l~~--~~~l~~~~~--  245 (290)
                      |++|++++|.+   ..++...+..+++|++|+|++|.++ ++.. +   ..+++|+.|++++|.++.  +..+..++.  
T Consensus       114 L~~L~L~~N~i---~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~  190 (361)
T 2xot_A          114 LEVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV  190 (361)
T ss_dssp             CCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred             CCEEECCCCcc---cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence            78888877775   2333336677777777777777776 3332 2   456677777777777666  234555554  


Q ss_pred             CCEEeCCCCCCCC
Q 022897          246 LEALDLSWNNING  258 (290)
Q Consensus       246 L~~L~l~~n~l~~  258 (290)
                      ++.|+|++|.+..
T Consensus       191 l~~l~l~~N~~~C  203 (361)
T 2xot_A          191 KNGLYLHNNPLEC  203 (361)
T ss_dssp             HTTEECCSSCEEC
T ss_pred             cceEEecCCCccC
Confidence            3666777766653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.78  E-value=4.5e-20  Score=159.72  Aligned_cols=217  Identities=18%  Similarity=0.207  Sum_probs=138.8

Q ss_pred             cEEeecccccccccccccccccccCCCcCCC-CCCCcEEECCCCcccCccchhhhhhcCCC-CCCcEEECCCCcCCCCch
Q 022897           64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHP-FEELQSLNLSDNWFRGFYENKAYDSFGSL-KQLKILDLGCNFFNDSIL  141 (290)
Q Consensus        64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~  141 (290)
                      .++.++++++.    +...+...+.. .+.. +++|++|++++|.+++..+..+...+..+ ++|++|++++|.+++..+
T Consensus        52 ~L~~L~Ls~N~----l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           52 SVTSLNLSGNS----LGFKNSDELVQ-ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             TCCEEECCSSC----GGGSCHHHHHH-HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             ceeEEECcCCC----CCHHHHHHHHH-HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            57777777776    32222211111 1122 27888888888888877666555556666 788888888888876665


Q ss_pred             hhcc----C-CCCCCEEEccCCCCCCCcch---hhcccCC-CCCeeeCCCCCCCCCCccc-hhhhccC-CCccEEEcCCC
Q 022897          142 PYLN----T-LTSLTTLILYSNSIEGSGTM---QGLANLR-YLQVLDLSWNENITSGSLT-RLGLANL-TNLKELDLRGC  210 (290)
Q Consensus       142 ~~l~----~-l~~L~~L~l~~n~~~~~~~~---~~~~~l~-~L~~L~l~~n~~~~~~~~~-~~~~~~~-~~L~~L~l~~n  210 (290)
                      ..+.    . .++|++|++++|.+++....   ..+..++ +|++|++++|.+...+... ...+..+ ++|++|++++|
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence            5443    3 35888888888888754332   2334454 8888888888863222100 0134445 48888888888


Q ss_pred             CCCC------CcCCCC-CCCCcEEEccCCCCCCc------cccccCCCCCEEeCCCCCCCCc-------ccccccCCCCC
Q 022897          211 GITT------SQGLAD-LPNLKTLDLRDCGITTI------QGLAKLKNLEALDLSWNNINGS-------LESQGLADLPN  270 (290)
Q Consensus       211 ~l~~------~~~~~~-l~~L~~L~l~~n~l~~~------~~l~~~~~L~~L~l~~n~l~~~-------i~~~~l~~l~~  270 (290)
                      .++.      +..+.. .++|++|++++|.+++.      ..+..+++|++|++++|.+.+.       ++.. +..+++
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~-~~~l~~  285 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA-FPNIQK  285 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT-STTCCE
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH-hccCCc
Confidence            8762      333434 35888888888888772      2346678888888888874421       2222 667778


Q ss_pred             CCEEecCCCCCccccc
Q 022897          271 LKILDLRDCGMTTIQG  286 (290)
Q Consensus       271 L~~L~L~~n~l~~~~~  286 (290)
                      |++|++++|++....+
T Consensus       286 L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          286 IILVDKNGKEIHPSHS  301 (362)
T ss_dssp             EEEECTTSCBCCGGGC
T ss_pred             eEEEecCCCcCCCcch
Confidence            8888888888876643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=4e-18  Score=143.03  Aligned_cols=169  Identities=28%  Similarity=0.341  Sum_probs=141.7

Q ss_pred             CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCe
Q 022897           98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV  177 (290)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  177 (290)
                      +..+.+..+.+.+..      .+..+++|++|++++|.+...  +.+..+++|++|++++|.+++..+   +..+++|++
T Consensus        26 ~~~~~l~~~~~~~~~------~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~   94 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV------TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGW   94 (291)
T ss_dssp             HHHHHTTCSCTTSEE------CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred             HHHHHhcCCCccccc------chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc---cccCCCCCE
Confidence            334455555555443      234678999999999998754  347889999999999999987432   889999999


Q ss_pred             eeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCC
Q 022897          178 LDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNIN  257 (290)
Q Consensus       178 L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~  257 (290)
                      |++++|.+   ..++  .+..+++|++|++++|.++..+.+..+++|++|++++|.+++.+.+..+++|++|++++|.++
T Consensus        95 L~l~~n~l---~~~~--~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A           95 LFLDENKV---KDLS--SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             EECCSSCC---CCGG--GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             EECCCCcC---CCCh--hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccc
Confidence            99999996   2344  588999999999999999966778899999999999999999888999999999999999999


Q ss_pred             CcccccccCCCCCCCEEecCCCCCcccc
Q 022897          258 GSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       258 ~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      + +++  +..+++|++|++++|++++.+
T Consensus       170 ~-~~~--l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          170 D-IVP--LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             C-CGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             c-chh--hcCCCccCEEECCCCcCCCCh
Confidence            5 444  888999999999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=2.8e-18  Score=157.68  Aligned_cols=83  Identities=20%  Similarity=0.219  Sum_probs=66.6

Q ss_pred             CCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCC
Q 022897          200 TNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD  278 (290)
Q Consensus       200 ~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~  278 (290)
                      ++|++|++++|.++ ++   ..+++|++|++++|.++..+.  .+++|+.|++++|.++ .+|.. +..+++|+.|+|++
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~-l~~l~~L~~L~L~~  293 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEG  293 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCCGG-GGGSCTTCEEECCS
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCCHH-HhhccccCEEEecC
Confidence            56777777777776 33   455788888888888887444  5678999999999998 78877 88899999999999


Q ss_pred             CCCcccccccC
Q 022897          279 CGMTTIQGKIF  289 (290)
Q Consensus       279 n~l~~~~~~~f  289 (290)
                      |++++.+|..|
T Consensus       294 N~l~~~~~~~l  304 (622)
T 3g06_A          294 NPLSERTLQAL  304 (622)
T ss_dssp             CCCCHHHHHHH
T ss_pred             CCCCCcCHHHH
Confidence            99998877643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=1.3e-18  Score=150.57  Aligned_cols=151  Identities=27%  Similarity=0.313  Sum_probs=70.0

Q ss_pred             CcEEECCCCcCCCCchhhcc-CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccE
Q 022897          126 LKILDLGCNFFNDSILPYLN-TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE  204 (290)
Q Consensus       126 L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  204 (290)
                      +++|+|++|.+++..+..+. .+++|++|+|++|.+++. ++..+..+++|++|++++|.+   ..++...+..+++|++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHL---HTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcC---CcCCHHHhCCCcCCCE
Confidence            45555555555443333343 455555555555555432 222444555555555555553   2233323445555555


Q ss_pred             EEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccc-c---ccCCCCCEEeCCCCCCCCcccccccCCCCC--CCEEe
Q 022897          205 LDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQG-L---AKLKNLEALDLSWNNINGSLESQGLADLPN--LKILD  275 (290)
Q Consensus       205 L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~-l---~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~--L~~L~  275 (290)
                      |+|++|.++  .+..+..+++|++|++++|.++. +.. +   ..+++|+.|+|++|.++ .+|...+..++.  ++.|+
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~  195 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY  195 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEE
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEE
Confidence            555555554  23444555555555555555554 211 2   33455555555555554 333322444443  24455


Q ss_pred             cCCCCC
Q 022897          276 LRDCGM  281 (290)
Q Consensus       276 L~~n~l  281 (290)
                      |++|++
T Consensus       196 l~~N~~  201 (361)
T 2xot_A          196 LHNNPL  201 (361)
T ss_dssp             CCSSCE
T ss_pred             ecCCCc
Confidence            555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=8.5e-19  Score=138.69  Aligned_cols=154  Identities=21%  Similarity=0.317  Sum_probs=128.0

Q ss_pred             CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897           93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL  172 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l  172 (290)
                      ..+++|++|++++|.+....      .+..+++|++|++++|.+..  ++.+..+++|++|++++|.+++..+ ..+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT------GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKI-PNLSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT------TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGS-CCCTTC
T ss_pred             hhcCCccEEeccCCCccChH------HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccC-hhhcCC
Confidence            56788999999999987432      46778999999999997653  4578899999999999999986444 478889


Q ss_pred             CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCC-CCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897          173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG-ITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL  251 (290)
Q Consensus       173 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l  251 (290)
                      ++|++|++++|.+  .+..+. .+..+++|++|++++|. ++..+.+..+++|++|++++|.+++.+.+..+++|++|++
T Consensus       112 ~~L~~L~Ls~n~i--~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l  188 (197)
T 4ezg_A          112 TSLTLLDISHSAH--DDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA  188 (197)
T ss_dssp             TTCCEEECCSSBC--BGGGHH-HHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEE
T ss_pred             CCCCEEEecCCcc--CcHhHH-HHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEe
Confidence            9999999999997  444454 78899999999999998 7744578899999999999999999778999999999999


Q ss_pred             CCCCCCC
Q 022897          252 SWNNING  258 (290)
Q Consensus       252 ~~n~l~~  258 (290)
                      ++|.+.+
T Consensus       189 ~~N~i~~  195 (197)
T 4ezg_A          189 FSQTIGG  195 (197)
T ss_dssp             CBC----
T ss_pred             eCcccCC
Confidence            9998863

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=5.7e-18  Score=136.28  Aligned_cols=149  Identities=19%  Similarity=0.180  Sum_probs=119.9

Q ss_pred             cEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCee
Q 022897           99 QSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVL  178 (290)
Q Consensus        99 ~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  178 (290)
                      +.++++++.++..+.     .+.  +.|++|++++|.+++..+..|..+++|++|++++|.+++. .+..+..+++|++|
T Consensus        14 ~~v~c~~~~l~~iP~-----~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-----NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSSCCS-----SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEE
T ss_pred             CEEEcCCCCcCcCCC-----ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEE
Confidence            678888888876543     232  6899999999999876667888899999999999998764 34578888999999


Q ss_pred             eCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCC
Q 022897          179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWN  254 (290)
Q Consensus       179 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n  254 (290)
                      ++++|.+   ..++...+..+++|++|+|++|.++  .+..+..+++|++|++++|.+++  +..+..+++|+.|++++|
T Consensus        86 ~Ls~N~l---~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           86 VLYGNKI---TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             ECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCcC---CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            9999985   3566546788889999999999888  46678888899999999998888  345788888999999988


Q ss_pred             CCCC
Q 022897          255 NING  258 (290)
Q Consensus       255 ~l~~  258 (290)
                      .+..
T Consensus       163 ~~~c  166 (220)
T 2v9t_B          163 PFIC  166 (220)
T ss_dssp             CEEC
T ss_pred             CcCC
Confidence            8864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=6.8e-18  Score=154.82  Aligned_cols=170  Identities=29%  Similarity=0.318  Sum_probs=141.8

Q ss_pred             cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch
Q 022897           62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL  141 (290)
Q Consensus        62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  141 (290)
                      ...++.++++++.         +..+  ..+..+++|+.|+|++|.+.+..+      +..+++|++|+|++|.+.+  +
T Consensus        42 L~~L~~L~l~~n~---------i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~--l  102 (605)
T 1m9s_A           42 LNSIDQIIANNSD---------IKSV--QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD--L  102 (605)
T ss_dssp             HTTCCCCBCTTCC---------CCCC--TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC--C
T ss_pred             CCCCCEEECcCCC---------CCCC--hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC--C
Confidence            3456666666654         2222  247789999999999999987643      7789999999999999986  3


Q ss_pred             hhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCC
Q 022897          142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL  221 (290)
Q Consensus       142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l  221 (290)
                      +.+..+++|++|+|++|.+.+.   ..+..+++|+.|+|++|.+  . .++  .+..+++|+.|+|++|.+.....+..+
T Consensus       103 ~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l--~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l  174 (605)
T 1m9s_A          103 SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKI--T-DIT--VLSRLTKLDTLSLEDNQISDIVPLAGL  174 (605)
T ss_dssp             TTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSEEECCSSCC--C-CCG--GGGSCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             hhhccCCCCCEEEecCCCCCCC---ccccCCCccCEEECCCCcc--C-Cch--hhcccCCCCEEECcCCcCCCchhhccC
Confidence            4788999999999999999873   3688999999999999997  3 233  788999999999999999833338999


Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCC
Q 022897          222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNING  258 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~  258 (290)
                      ++|+.|+|++|.+++.+.+..+++|+.|+|++|.+++
T Consensus       175 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          175 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence            9999999999999998889999999999999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.4e-18  Score=149.63  Aligned_cols=187  Identities=19%  Similarity=0.150  Sum_probs=148.3

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCE-EEccCCCCCCCcchhhcccCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTT-LILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      +++++|+|++|+++...+.    +|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+..|.++. +++..+..++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            5799999999999987666    78999999999999999876555 45788888876 5666788875 3456889999


Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCC-CCCC--CCcCCCCCC-CCcEEEccCCCCCC-ccccccCCCCCE
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG-CGIT--TSQGLADLP-NLKTLDLRDCGITT-IQGLAKLKNLEA  248 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~--~~~~~~~l~-~L~~L~l~~n~l~~-~~~l~~~~~L~~  248 (290)
                      +|++|++++|.+   ..++...+....++..|++.+ +.+.  ....+..+. .++.|++++|.++. ++......+|+.
T Consensus       105 ~L~~L~l~~n~l---~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~  181 (350)
T 4ay9_X          105 NLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE  181 (350)
T ss_dssp             TCCEEEEEEECC---SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEE
T ss_pred             cccccccccccc---ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhH
Confidence            999999999996   334443555666788888866 4565  344555554 68999999999998 455556678999


Q ss_pred             EeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccCC
Q 022897          249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       249 L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f~  290 (290)
                      |+++++...+.+|...|..+++|++|+|++|+|+.+++..|+
T Consensus       182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~  223 (350)
T 4ay9_X          182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  223 (350)
T ss_dssp             EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred             HhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence            999864444489988789999999999999999999988764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=2.6e-18  Score=157.92  Aligned_cols=57  Identities=23%  Similarity=0.205  Sum_probs=36.8

Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      ++|++|++++|.+++.+  ..+++|+.|++++|.++ .+|.    .+++|+.|+|++|+|+.++
T Consensus       221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~~lp  277 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTRLP  277 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCCSCC
T ss_pred             CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCCcCC
Confidence            45666666666666533  34466777777777776 4554    3567788888888887554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=1.1e-19  Score=170.29  Aligned_cols=196  Identities=22%  Similarity=0.139  Sum_probs=110.2

Q ss_pred             ccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEeccccCcEEeecccccccccccccccccc
Q 022897            7 CLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASL   86 (290)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~   86 (290)
                      ..++++++++++...+..  +.   ...-..|..    ...... .|.++.+.  ..+++.++|.++.    +..     
T Consensus       129 ~~~~~~~~l~~~~~~~~~--~~---~~~~~~~~~----~~~~~~-~~~~~~~s--~~~~~~l~L~~n~----~~~-----  187 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTD--SK---TAKKQQPTG----DSTPSG-TATNSAVS--TPLTPKIELFANG----KDE-----  187 (727)
T ss_dssp             ---CCCHHHHHHHHHHHH--HH---TTC----------------------------------------------------
T ss_pred             ccccchhhhhhhhhhccc--cc---CcccCCCcC----CCCccc-cCCCceec--CCccceEEeeCCC----CCc-----
Confidence            445678999999999876  32   344566754    133445 89998885  4678888887766    211     


Q ss_pred             cCCCcCCCCCCCcEEECCCCcccCccc-----hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCC
Q 022897           87 LNMSLFHPFEELQSLNLSDNWFRGFYE-----NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIE  161 (290)
Q Consensus        87 ~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  161 (290)
                      ...      ..|+.++|+.+.+.+...     ....+.+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++
T Consensus       188 ~~~------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~  260 (727)
T 4b8c_D          188 ANQ------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT  260 (727)
T ss_dssp             ----------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS
T ss_pred             chh------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc
Confidence            111      112333333333322110     011226788999999999999988 67777778999999999999998


Q ss_pred             CCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC
Q 022897          162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       162 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~  236 (290)
                       .++ ..+..+++|++|+|++|.+  . .+|. .+..+++|++|+|++|.++ +|..+..+++|++|+|++|.+++
T Consensus       261 -~lp-~~~~~l~~L~~L~Ls~N~l--~-~lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          261 -ELP-AEIKNLSNLRVLDLSHNRL--T-SLPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             -CCC-GGGGGGTTCCEEECTTSCC--S-SCCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             -ccC-hhhhCCCCCCEEeCcCCcC--C-ccCh-hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence             444 5788999999999999996  3 6776 7889999999999999998 77789999999999999999997

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=134.20  Aligned_cols=134  Identities=22%  Similarity=0.239  Sum_probs=115.4

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ..+++|++++|.+++..+..   .|..+++|++|++++|.+++..+..|..+++|++|++++|.+++. ++..+..+++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L  107 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESL  107 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSC
T ss_pred             CCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCC
Confidence            35689999999998875431   578899999999999999987777899999999999999999865 44578999999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~  236 (290)
                      ++|++++|.+  .+ +++..+..+++|++|++++|.++  .+..+..+++|++|++++|.+..
T Consensus       108 ~~L~Ls~N~l--~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          108 KTLMLRSNRI--TC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CEEECTTSCC--CC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CEEECCCCcC--Ce-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            9999999996  43 43337889999999999999998  47789999999999999999986

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=4.8e-20  Score=164.36  Aligned_cols=187  Identities=24%  Similarity=0.226  Sum_probs=93.9

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-----hhccCCCCCCEEEccCCCCCCCc---chhh
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-----PYLNTLTSLTTLILYSNSIEGSG---TMQG  168 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~---~~~~  168 (290)
                      +|++|++++|.++......+...+..+++|++|++++|.+.+...     ..+..+++|++|++++|.+++..   .+..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            444455544444433222222234444555555555554433211     11123455555555555554321   1223


Q ss_pred             cccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCCCC--cc
Q 022897          169 LANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGITT--IQ  238 (290)
Q Consensus       169 ~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l~~--~~  238 (290)
                      +..+++|++|++++|.+...+  .+........++|++|++++|.++      ++..+..+++|++|++++|.+++  +.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            444555666666555531110  011100112245666666666555      12334455677777777777665  22


Q ss_pred             cccc-----CCCCCEEeCCCCCCCC----cccccccCCCCCCCEEecCCCCCccc
Q 022897          239 GLAK-----LKNLEALDLSWNNING----SLESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       239 ~l~~-----~~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      .+..     .++|++|++++|.+++    .++.. +..+++|++|++++|++++.
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCCCCCHH
Confidence            2221     5677777777777764    45555 66677778888887777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=5.8e-20  Score=163.84  Aligned_cols=61  Identities=28%  Similarity=0.406  Sum_probs=28.0

Q ss_pred             CCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCccccc---ccC-CCCCCCEEecCCCCCcc
Q 022897          223 NLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSLESQ---GLA-DLPNLKILDLRDCGMTT  283 (290)
Q Consensus       223 ~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~---~l~-~l~~L~~L~L~~n~l~~  283 (290)
                      +|++|++++|.+++      +..+..+++|++|++++|.+++..+..   .+. ..++|++|+|++|++++
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            44444444444443      122334455555555555554322221   011 14456666666665553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=5.1e-17  Score=147.70  Aligned_cols=160  Identities=23%  Similarity=0.252  Sum_probs=130.6

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ  176 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  176 (290)
                      +|+.|++++|.+++. |.    .+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ ++.  +..  +|+
T Consensus        60 ~L~~L~Ls~n~L~~l-p~----~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSSL-PD----NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLK  123 (571)
T ss_dssp             TCSEEECCSSCCSCC-CS----CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCC
T ss_pred             CccEEEeCCCCCCcc-CH----hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCC
Confidence            799999999999884 43    33  378999999999998 566   457999999999999987 343  444  999


Q ss_pred             eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCC
Q 022897          177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN  255 (290)
Q Consensus       177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~  255 (290)
                      +|++++|.+  . .+|.    .+++|++|++++|.++ ++.   .+++|++|++++|.+++.+.+.  ++|+.|+|++|.
T Consensus       124 ~L~Ls~N~l--~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          124 HLDVDNNQL--T-MLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNL  191 (571)
T ss_dssp             EEECCSSCC--S-CCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSC
T ss_pred             EEECCCCcC--C-CCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCC
Confidence            999999996  3 3664    6789999999999998 444   6789999999999999944455  899999999999


Q ss_pred             CCCcccccccCCCCCC-------CEEecCCCCCcccccccC
Q 022897          256 INGSLESQGLADLPNL-------KILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       256 l~~~i~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~f  289 (290)
                      ++ .+|.  +..  +|       +.|+|++|+|+.+++.++
T Consensus       192 L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~  227 (571)
T 3cvr_A          192 LE-SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL  227 (571)
T ss_dssp             CS-SCCC--CC----------CCEEEECCSSCCCCCCGGGG
T ss_pred             CC-chhh--HHH--hhhcccccceEEecCCCcceecCHHHh
Confidence            99 7777  332  66       999999999998776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=3.1e-20  Score=169.30  Aligned_cols=185  Identities=21%  Similarity=0.226  Sum_probs=146.6

Q ss_pred             CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-------------CCCCchhhccCCCCCCEEE-ccCC
Q 022897           93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-------------FNDSILPYLNTLTSLTTLI-LYSN  158 (290)
Q Consensus        93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n  158 (290)
                      ...++|+.|++++|.+.. +|.    .++.+++|++|++++|.             ..+..|..++.+++|+.|+ ++.|
T Consensus       346 ~~~~~L~~L~Ls~n~L~~-Lp~----~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n  420 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV-LQS----ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  420 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH-HHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             ccCccceeccCChhhHHh-hHH----HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence            567899999999998863 344    78888999999997774             4556677778888888888 5555


Q ss_pred             CCCCCcc----hhhccc--CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccC
Q 022897          159 SIEGSGT----MQGLAN--LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRD  231 (290)
Q Consensus       159 ~~~~~~~----~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~  231 (290)
                      .+.....    ...+..  ...|+.|++++|.+  . .+|  .+..+++|+.|++++|.++ +|..+..+++|+.|++++
T Consensus       421 ~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l--~-~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--T-VLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCC--S-SCC--CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred             ccchhhhhhhhcccccccCccCceEEEecCCCC--C-CCc--CccccccCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence            4321000    001111  13589999999986  3 366  3889999999999999998 788899999999999999


Q ss_pred             CCCCCccccccCCCCCEEeCCCCCCCCcc-cccccCCCCCCCEEecCCCCCccccccc
Q 022897          232 CGITTIQGLAKLKNLEALDLSWNNINGSL-ESQGLADLPNLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       232 n~l~~~~~l~~~~~L~~L~l~~n~l~~~i-~~~~l~~l~~L~~L~L~~n~l~~~~~~~  288 (290)
                      |.+++++.+..+++|+.|+|++|.+++.. |.. +..+++|+.|+|++|++++.+|..
T Consensus       496 N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          496 NALENVDGVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             SCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCCcccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCccHH
Confidence            99999668999999999999999999654 666 899999999999999999988753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=3e-16  Score=139.63  Aligned_cols=161  Identities=22%  Similarity=0.211  Sum_probs=92.1

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ++|++|++++|.+.+ ++     .+..+++|++|++++|.+++ +|..   .++|++|++++|.+++ .+  .+..+++|
T Consensus       131 ~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFL  197 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred             CCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCC
Confidence            355555555555554 22     35555666666666665553 3322   2356666666666554 12  35666666


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN  255 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~  255 (290)
                      ++|++++|.+  . .++.    ..++|++|++++|.++..+.+..+++|++|++++|.+++.+.  .+++|+.|++++|.
T Consensus       198 ~~L~l~~N~l--~-~l~~----~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          198 TAIYADNNSL--K-KLPD----LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNY  268 (454)
T ss_dssp             CEEECCSSCC--S-SCCC----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSC
T ss_pred             CEEECCCCcC--C-cCCC----CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCc
Confidence            6666666664  2 2332    113666677777666622246667777777777777766322  23567777777777


Q ss_pred             CCCcccccccCCCCCCCEEecCCCCCcc
Q 022897          256 INGSLESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       256 l~~~i~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      +++ +|..    .++|++|++++|++++
T Consensus       269 l~~-l~~~----~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          269 LTD-LPEL----PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CSC-CCCC----CTTCCEEECCSSCCSE
T ss_pred             ccc-cCcc----cCcCCEEECcCCccCc
Confidence            763 5442    3567777777777776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1.5e-17  Score=137.50  Aligned_cols=152  Identities=26%  Similarity=0.300  Sum_probs=127.2

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      .+..+++|++|++++|.+....      .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +  .+.
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~--~~~  104 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA------GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-N--GIP  104 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-T--TCC
T ss_pred             chhhcCcCcEEECcCCCcccch------HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-C--ccc
Confidence            3567889999999999887542      56788999999999999986544  88999999999999999863 2  233


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEe
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALD  250 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~  250 (290)
                      . ++|++|++++|.+.   .++  .+..+++|++|++++|+++..+.+..+++|++|++++|.+++...+..+++|+.|+
T Consensus       105 ~-~~L~~L~L~~N~l~---~~~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~  178 (263)
T 1xeu_A          105 S-ACLSRLFLDNNELR---DTD--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWID  178 (263)
T ss_dssp             C-SSCCEEECCSSCCS---BSG--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEE
T ss_pred             c-CcccEEEccCCccC---CCh--hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEe
Confidence            3 89999999999862   344  58889999999999999985557888999999999999999988888999999999


Q ss_pred             CCCCCCCCc
Q 022897          251 LSWNNINGS  259 (290)
Q Consensus       251 l~~n~l~~~  259 (290)
                      +++|.+++.
T Consensus       179 l~~N~~~~~  187 (263)
T 1xeu_A          179 LTGQKCVNE  187 (263)
T ss_dssp             EEEEEEECC
T ss_pred             CCCCcccCC
Confidence            999988743

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=4.3e-16  Score=138.61  Aligned_cols=143  Identities=22%  Similarity=0.229  Sum_probs=99.2

Q ss_pred             cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      .++.+++|++|++++|.+++. +.    .   ..+|++|++++|.+++ +| .+..+++|++|++++|.+++. + .   
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~l-p~----~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~-~---  212 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKL-PD----L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-P-D---  212 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCC-CC----C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-C-C---
T ss_pred             ccCCCCCCCEEECCCCcCccc-CC----C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-C-C---
Confidence            367778888888888887763 22    1   2478888888888775 44 577788888888888887752 2 1   


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEE
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEAL  249 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L  249 (290)
                      ..++|++|++++|.+  . .+|  .+..+++|++|++++|.++ .+.   .+++|++|++++|.+++.+..  .++|+.|
T Consensus       213 ~~~~L~~L~l~~n~l--~-~lp--~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L  282 (454)
T 1jl5_A          213 LPLSLESIVAGNNIL--E-ELP--ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPEL--PQSLTFL  282 (454)
T ss_dssp             CCTTCCEEECCSSCC--S-SCC--CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCCC--CTTCCEE
T ss_pred             CcCcccEEECcCCcC--C-ccc--ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccccCcc--cCcCCEE
Confidence            124788888888875  2 455  3677888888888888877 333   236788888888887773322  3667777


Q ss_pred             eCCCCCCCC
Q 022897          250 DLSWNNING  258 (290)
Q Consensus       250 ~l~~n~l~~  258 (290)
                      ++++|.+++
T Consensus       283 ~ls~N~l~~  291 (454)
T 1jl5_A          283 DVSENIFSG  291 (454)
T ss_dssp             ECCSSCCSE
T ss_pred             ECcCCccCc
Confidence            777777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=5.9e-17  Score=124.69  Aligned_cols=129  Identities=28%  Similarity=0.251  Sum_probs=68.7

Q ss_pred             CCCCcEEECCCCcCC-CCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897          123 LKQLKILDLGCNFFN-DSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN  201 (290)
Q Consensus       123 l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  201 (290)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.   ..+..+++|++|++++|.+  .+.++. .+..+++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l--~~~~~~-~~~~l~~   96 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRI--FGGLDM-LAEKLPN   96 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCC--CSCCCH-HHHHCTT
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcC--chHHHH-HHhhCCC
Confidence            356666666666665 45555556666666666666666553   3556666666666666665  322333 4445566


Q ss_pred             ccEEEcCCCCCC-CC--cCCCCCCCCcEEEccCCCCCC-cc----ccccCCCCCEEeCCCCCCC
Q 022897          202 LKELDLRGCGIT-TS--QGLADLPNLKTLDLRDCGITT-IQ----GLAKLKNLEALDLSWNNIN  257 (290)
Q Consensus       202 L~~L~l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~-~~----~l~~~~~L~~L~l~~n~l~  257 (290)
                      |++|++++|.++ .+  ..+..+++|++|++++|.+++ +.    .+..+++|++|++++|.+.
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            666666665554 22  334444444444444444444 11    2334444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=6.8e-18  Score=158.29  Aligned_cols=181  Identities=21%  Similarity=0.065  Sum_probs=111.4

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcE-----EECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKI-----LDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~-----L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      +.++.|++.+|.+.....     .+.....|+.     ++++.|.+. ..+..+..++.|+.|+|++|.+.. ++. .+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~-----~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~-~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ-----ALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISA-NIF  244 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSC-CCG-GGG
T ss_pred             CccceEEeeCCCCCcchh-----hHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCC-CCh-hhc
Confidence            457888888888766432     2222222332     333334443 456778899999999999999984 443 566


Q ss_pred             cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCE
Q 022897          171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEA  248 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~  248 (290)
                      .+++|++|+|++|.+  . .+|. .+..+++|++|+|++|.++ +|..+..+++|++|+|++|.++. |..+..+++|++
T Consensus       245 ~l~~L~~L~Ls~N~l--~-~lp~-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSL--T-ELPA-EIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF  320 (727)
T ss_dssp             GCCSCSCCBCTTSCC--S-CCCG-GGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred             CCCCCCEEEeeCCcC--c-ccCh-hhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence            899999999999996  3 6776 7899999999999999998 88889999999999999999988 667999999999


Q ss_pred             EeCCCCCCCCcccccccCCCC-CCCEEecCCCCCcccccccC
Q 022897          249 LDLSWNNINGSLESQGLADLP-NLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       249 L~l~~n~l~~~i~~~~l~~l~-~L~~L~L~~n~l~~~~~~~f  289 (290)
                      |+|++|.+++.+|.. +..+. .+..++|++|.+++.+|..+
T Consensus       321 L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          321 LGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             EECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             EeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcCcccc
Confidence            999999999877765 32221 11235566666666665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=1.1e-15  Score=120.27  Aligned_cols=130  Identities=23%  Similarity=0.252  Sum_probs=99.2

Q ss_pred             cEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEE
Q 022897          127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD  206 (290)
Q Consensus       127 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  206 (290)
                      ++++++++.+. .+|..+.  .+|++|++++|.+++..+...+..+++|++|++++|.+  .+..+. .+..+++|++|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~-~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEPN-AFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC--CCBCTT-TTTTCTTCCEEE
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC--CCcCHh-HcCCcccCCEEE
Confidence            78899988885 5666543  38899999999887643322477888899999988886  433343 778888888888


Q ss_pred             cCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccc
Q 022897          207 LRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLES  262 (290)
Q Consensus       207 l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~  262 (290)
                      +++|+++  .+..+..+++|++|++++|.+++  +..+..+++|++|++++|.+.+..+.
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            8888888  45557788888888888888887  55677888888888888888866553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=1.7e-15  Score=119.08  Aligned_cols=128  Identities=18%  Similarity=0.180  Sum_probs=107.7

Q ss_pred             CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-hccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897           98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ  176 (290)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  176 (290)
                      -+.++++++.+...+.     .+.  ..|++|++++|.+.+..+. .+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus        10 ~~~l~~s~~~l~~ip~-----~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~   81 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPR-----DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCSSCCS-----CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCC
T ss_pred             CCEEEcCCCCcCcCcc-----CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCC
Confidence            3789999999965533     332  3899999999999866554 48899999999999999987544 5889999999


Q ss_pred             eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC
Q 022897          177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~  236 (290)
                      +|++++|.+  . .++...+..+++|++|++++|+++  .+..+..+++|++|++++|.++.
T Consensus        82 ~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           82 ELQLGENKI--K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EEECCSCCC--C-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             EEECCCCcC--C-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            999999996  3 444436889999999999999998  57889999999999999999987

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=3.2e-16  Score=118.09  Aligned_cols=107  Identities=31%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             CCCcEEECCCCcCC-CCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCc
Q 022897          124 KQLKILDLGCNFFN-DSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL  202 (290)
Q Consensus       124 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  202 (290)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.   ..+..+++|++|++++|.+  .+.++. .+..+++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i--~~~~~~-~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV--SGGLEV-LAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC--CSCTHH-HHHHCTTC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc--cchHHH-HhhhCCCC
Confidence            44555555555554 34444445555555555555555442   2444555555555555554  222332 33444444


Q ss_pred             cEEEcCCCCCCC-C--cCCCCCCCCcEEEccCCCCCC
Q 022897          203 KELDLRGCGITT-S--QGLADLPNLKTLDLRDCGITT  236 (290)
Q Consensus       203 ~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~  236 (290)
                      ++|++++|.++. +  ..+..+++|++|++++|.+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            444444444431 1  233333444444444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=2.6e-16  Score=121.01  Aligned_cols=135  Identities=27%  Similarity=0.267  Sum_probs=113.5

Q ss_pred             CCCCCCEEEccCCCCC-CCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCC
Q 022897          146 TLTSLTTLILYSNSIE-GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLP  222 (290)
Q Consensus       146 ~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~  222 (290)
                      ..++|++|++++|.++ +.++ ..+..+++|++|++++|.+..   + . .+..+++|++|++++|.++  .+..+..++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~---~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLIS---V-S-NLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCC---C-S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCC---h-h-hhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            3578999999999998 3433 467889999999999999732   3 3 7889999999999999998  444555699


Q ss_pred             CCcEEEccCCCCCC-c--cccccCCCCCEEeCCCCCCCCcccc---cccCCCCCCCEEecCCCCCcccccc
Q 022897          223 NLKTLDLRDCGITT-I--QGLAKLKNLEALDLSWNNINGSLES---QGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       223 ~L~~L~l~~n~l~~-~--~~l~~~~~L~~L~l~~n~l~~~i~~---~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      +|++|++++|.+++ +  ..+..+++|++|++++|.+++ +|.   ..+..+++|++|++++|.+...+..
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            99999999999998 3  678899999999999999984 554   3488999999999999999887654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=3.8e-15  Score=115.51  Aligned_cols=110  Identities=25%  Similarity=0.213  Sum_probs=72.7

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ++|++|++++|.+.+..+.    .|..+++|++|++++|.+++..+..+..+++|++|++++|.+++. ++..+..+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCccc
Confidence            5788888888888776554    567788888888888888766556667777788888877777653 33345666677


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT  213 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  213 (290)
                      ++|++++|.+   ..++...+..+++|++|++++|.+.
T Consensus       103 ~~L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          103 KELALDTNQL---KSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CEEECCSSCC---SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEEECcCCcc---eEeCHHHhcCCcccCEEEecCCCee
Confidence            7777776664   2344323445555555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.9e-15  Score=113.79  Aligned_cols=126  Identities=27%  Similarity=0.257  Sum_probs=95.8

Q ss_pred             CCCCcEEECCCCccc-CccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897           95 FEELQSLNLSDNWFR-GFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      .++|++|++++|.+. +.++.    .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+ ..+..++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCP   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCT
T ss_pred             CccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCC
Confidence            467888899988887 55554    667888899999988888765  667888889999999998887533 4666788


Q ss_pred             CCCeeeCCCCCCCCCCccc-hhhhccCCCccEEEcCCCCCC-CCc----CCCCCCCCcEEEcc
Q 022897          174 YLQVLDLSWNENITSGSLT-RLGLANLTNLKELDLRGCGIT-TSQ----GLADLPNLKTLDLR  230 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~-~~~----~~~~l~~L~~L~l~  230 (290)
                      +|++|++++|.+  . .++ ...+..+++|++|++++|.++ .+.    .+..+++|++|+++
T Consensus        89 ~L~~L~ls~N~i--~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKI--K-DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCC--C-SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcC--C-ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            899999988886  3 232 126788888999999998887 333    46677777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=1.4e-14  Score=112.31  Aligned_cols=129  Identities=22%  Similarity=0.153  Sum_probs=82.8

Q ss_pred             CcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEE
Q 022897          126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKEL  205 (290)
Q Consensus       126 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  205 (290)
                      .+.++++++.++. +|..+  .++|++|++++|.+++. ++..+..+++|++|++++|.+   ..++...+..+++|++|
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEE
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc---eEeChhHccCCCccCEE
Confidence            4677777777763 44332  36778888888877643 334566777777777777775   23444345677777777


Q ss_pred             EcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC-cc-ccccCCCCCEEeCCCCCCCCccc
Q 022897          206 DLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT-IQ-GLAKLKNLEALDLSWNNINGSLE  261 (290)
Q Consensus       206 ~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~~i~  261 (290)
                      ++++|.++ . +..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+..+
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            77777776 2 3335666777777777777766 22 24566677777777777665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=1.5e-14  Score=113.71  Aligned_cols=124  Identities=22%  Similarity=0.243  Sum_probs=92.1

Q ss_pred             cEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEE
Q 022897          127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD  206 (290)
Q Consensus       127 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  206 (290)
                      ++++++++.++ .+|..+  .++|++|++++|.++. ++ ..+..+++|++|++++|.+  . .++...+..+++|++|+
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~-ip-~~~~~l~~L~~L~Ls~N~i--~-~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTL-VP-KELSNYKHLTLIDLSNNRI--S-TLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCS-CC-GGGGGCTTCCEEECCSSCC--C-CCCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCch-hH-HHhhcccCCCEEECCCCcC--C-EeCHhHccCCCCCCEEE
Confidence            67888888876 455544  3578888888888874 33 5788888888888888885  2 34444677888888888


Q ss_pred             cCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCC
Q 022897          207 LRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNING  258 (290)
Q Consensus       207 l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~  258 (290)
                      |++|.++  .+..+..+++|++|++++|.++.  +..+..+++|+.|++++|.+..
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8888887  34567788888888888888887  2347778888888888887764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=2.1e-14  Score=112.97  Aligned_cols=109  Identities=22%  Similarity=0.284  Sum_probs=79.9

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ++|++|++++|.++... .    .|..+++|++|++++|.+++..+..|..+++|++|++++|.+++. ++..+..+++|
T Consensus        31 ~~l~~L~L~~n~i~~ip-~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-K----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI-PPRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-G----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTC
T ss_pred             CCCCEEECCCCcCchhH-H----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe-CHHHhCCCCCC
Confidence            46888888888887443 3    677888888888888888877777788888888888888888754 33467777788


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT  213 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  213 (290)
                      ++|++++|.+   ..++...+..+++|++|++++|.+.
T Consensus       105 ~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          105 RLLSLHGNDI---SVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CEEECCSSCC---CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCCC---CeeChhhhhcCccccEEEeCCCCee
Confidence            8888877775   2444435666677777777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=1.8e-17  Score=151.13  Aligned_cols=176  Identities=24%  Similarity=0.290  Sum_probs=132.8

Q ss_pred             CCcCCCCCCCcEEECCCCc-------------ccCccchhhhhhcCCCCCCcEEE-CCCCcCCCCchh------hccC--
Q 022897           89 MSLFHPFEELQSLNLSDNW-------------FRGFYENKAYDSFGSLKQLKILD-LGCNFFNDSILP------YLNT--  146 (290)
Q Consensus        89 ~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~~l~~l~~L~~L~-l~~n~l~~~~~~------~l~~--  146 (290)
                      +..++++++|++|++++|.             ..+..+.    .++.+++|+.|+ ++.|.+.. ++.      .+..  
T Consensus       365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~----~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~~l~  439 (567)
T 1dce_A          365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE----TLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKME  439 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH----HHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH----HHHHHHhcccCcchhhcccch-hhhhhhhcccccccC
Confidence            3457788899999997764             3333333    667777888887 55554321 111      0111  


Q ss_pred             CCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcE
Q 022897          147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKT  226 (290)
Q Consensus       147 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~  226 (290)
                      ...|+.|++++|.+++ ++  .+..+++|+.|++++|.+  . .+|. .+..+++|++|+|++|.++..+.+..+++|++
T Consensus       440 ~~~L~~L~Ls~n~l~~-lp--~~~~l~~L~~L~Ls~N~l--~-~lp~-~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~  512 (567)
T 1dce_A          440 YADVRVLHLAHKDLTV-LC--HLEQLLLVTHLDLSHNRL--R-ALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQE  512 (567)
T ss_dssp             HTTCSEEECTTSCCSS-CC--CGGGGTTCCEEECCSSCC--C-CCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCE
T ss_pred             ccCceEEEecCCCCCC-Cc--CccccccCcEeecCcccc--c-ccch-hhhcCCCCCEEECCCCCCCCCcccCCCCCCcE
Confidence            1369999999999987 33  388999999999999996  3 6777 89999999999999999994348999999999


Q ss_pred             EEccCCCCCC---ccccccCCCCCEEeCCCCCCCCccccc--ccCCCCCCCEEec
Q 022897          227 LDLRDCGITT---IQGLAKLKNLEALDLSWNNINGSLESQ--GLADLPNLKILDL  276 (290)
Q Consensus       227 L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~~i~~~--~l~~l~~L~~L~L  276 (290)
                      |++++|.+++   |..+..+++|+.|+|++|.+++..|..  .+..+++|+.|++
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999998   467899999999999999998543321  2344789999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.1e-14  Score=124.26  Aligned_cols=89  Identities=20%  Similarity=0.266  Sum_probs=75.5

Q ss_pred             CCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCC-EEeCCCCCCCCcccccccCCCCCCCE
Q 022897          199 LTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLE-ALDLSWNNINGSLESQGLADLPNLKI  273 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~-~L~l~~n~l~~~i~~~~l~~l~~L~~  273 (290)
                      +++|+.|++++|.++  ...+|..+.+|+++++.+| ++.  ...|..+++|+ .+++.+ .++ .|+..+|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence            788999999998888  5567888999999999988 665  55688889999 999988 666 787777999999999


Q ss_pred             EecCCCCCcccccccCC
Q 022897          274 LDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       274 L~L~~n~l~~~~~~~f~  290 (290)
                      |++++|+++.+.+.+|.
T Consensus       302 l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          302 VLATGDKITTLGDELFG  318 (329)
T ss_dssp             EEECSSCCCEECTTTTC
T ss_pred             EEeCCCccCccchhhhc
Confidence            99999999999888884

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=6.4e-15  Score=114.13  Aligned_cols=129  Identities=21%  Similarity=0.166  Sum_probs=60.4

Q ss_pred             CCCCCCcEEECCCCcCCCCchhhccCC-CCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897          121 GSLKQLKILDLGCNFFNDSILPYLNTL-TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL  199 (290)
Q Consensus       121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  199 (290)
                      ..+.+|++|++++|.++. ++. +..+ ++|++|++++|.+++.   ..+..+++|++|++++|.+   ..++...+..+
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l---~~~~~~~~~~l   87 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI---CRIGEGLDQAL   87 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC---CEECSCHHHHC
T ss_pred             CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc---cccCcchhhcC
Confidence            334445555555554442 222 2222 2555555555555431   2344455555555555553   12332223455


Q ss_pred             CCccEEEcCCCCCC-CCc--CCCCCCCCcEEEccCCCCCC-cc----ccccCCCCCEEeCCCCCCC
Q 022897          200 TNLKELDLRGCGIT-TSQ--GLADLPNLKTLDLRDCGITT-IQ----GLAKLKNLEALDLSWNNIN  257 (290)
Q Consensus       200 ~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~-~~----~l~~~~~L~~L~l~~n~l~  257 (290)
                      ++|++|++++|.+. .+.  .+..+++|++|++++|.++. +.    .+..+++|+.|+++.|...
T Consensus        88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            55555555555554 222  34445555555555555544 22    1455555666666555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1e-14  Score=112.98  Aligned_cols=132  Identities=23%  Similarity=0.267  Sum_probs=108.9

Q ss_pred             hccCCCCCCEEEccCCCCCCCcchhhcccCC-CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcC-CC
Q 022897          143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLR-YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQG-LA  219 (290)
Q Consensus       143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~  219 (290)
                      .+..+.+|++|++++|.++.. +  .+..+. +|++|++++|.+  . .+ . .+..+++|++|++++|.++ .++. +.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~--~~~~~~~~L~~L~Ls~N~l--~-~~-~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-E--NLGATLDQFDAIDFSDNEI--R-KL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-C--CGGGGTTCCSEEECCSSCC--C-EE-C-CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             hcCCcCCceEEEeeCCCCchh-H--HhhhcCCCCCEEECCCCCC--C-cc-c-ccccCCCCCEEECCCCcccccCcchhh
Confidence            356788999999999999853 2  344444 999999999996  3 34 2 7889999999999999998 4444 48


Q ss_pred             CCCCCcEEEccCCCCCC-cc--ccccCCCCCEEeCCCCCCCCccccc---ccCCCCCCCEEecCCCCCcc
Q 022897          220 DLPNLKTLDLRDCGITT-IQ--GLAKLKNLEALDLSWNNINGSLESQ---GLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       220 ~l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~~n~l~~~i~~~---~l~~l~~L~~L~L~~n~l~~  283 (290)
                      .+++|++|++++|.++. +.  .+..+++|++|++++|.++ .+|..   .+..+++|+.|++++|.+..
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            89999999999999988 43  6889999999999999998 56653   47789999999999997654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=7.1e-14  Score=119.13  Aligned_cols=180  Identities=16%  Similarity=0.158  Sum_probs=139.9

Q ss_pred             ccCCCcCCC--------CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccC
Q 022897           86 LLNMSLFHP--------FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS  157 (290)
Q Consensus        86 ~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  157 (290)
                      .++...|..        +++|++|++.+ .+......    +|..+++|+.++++.|.+....+..|..+.++..+.+..
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~----aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA----AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT----TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-cccchhHH----HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            345566777        99999999998 77776665    899999999999999988766666777777777666554


Q ss_pred             CCC-------CC-------------------Ccch--------------------------hhc-ccCCCCCeeeCCCCC
Q 022897          158 NSI-------EG-------------------SGTM--------------------------QGL-ANLRYLQVLDLSWNE  184 (290)
Q Consensus       158 n~~-------~~-------------------~~~~--------------------------~~~-~~l~~L~~L~l~~n~  184 (290)
                      ...       ..                   ..+.                          ..+ ..+++|+.+++.+|.
T Consensus       158 ~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~  237 (329)
T 3sb4_A          158 SDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN  237 (329)
T ss_dssp             THHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred             hhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC
Confidence            210       00                   0000                          000 127899999999988


Q ss_pred             CCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCc-EEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCc
Q 022897          185 NITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLK-TLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGS  259 (290)
Q Consensus       185 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~-~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~  259 (290)
                         ...++...|..+++|+.|++..| +.  ...+|..+.+|+ .+++.+ .++.  ...|..+++|+.++++.|.++ .
T Consensus       238 ---i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~  311 (329)
T 3sb4_A          238 ---ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-T  311 (329)
T ss_dssp             ---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-E
T ss_pred             ---cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-c
Confidence               45677778999999999999998 65  677899999999 999998 6666  567999999999999999998 7


Q ss_pred             ccccccCCCCCCCEEec
Q 022897          260 LESQGLADLPNLKILDL  276 (290)
Q Consensus       260 i~~~~l~~l~~L~~L~L  276 (290)
                      ++..+|.++++|+.|..
T Consensus       312 I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          312 LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECTTTTCTTCCCCEEEC
T ss_pred             cchhhhcCCcchhhhcc
Confidence            88877999999999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=1.9e-17  Score=131.01  Aligned_cols=131  Identities=31%  Similarity=0.326  Sum_probs=64.7

Q ss_pred             hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCC
Q 022897          143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLP  222 (290)
Q Consensus       143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~  222 (290)
                      .+..+++|++|++++|.+++ ++  .+..+++|++|++++|.+.   .++. .+..+++|++|++++|.++..+.+..++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~---~l~~-~~~~~~~L~~L~L~~N~l~~l~~~~~l~  115 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK---KIEN-LDAVADTLEELWISYNQIASLSGIEKLV  115 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC---SCSS-HHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc---cccc-hhhcCCcCCEEECcCCcCCcCCccccCC
Confidence            44455555555555555444 11  3444455555555555431   2333 3344455555555555555222344455


Q ss_pred             CCcEEEccCCCCCC-c--cccccCCCCCEEeCCCCCCCCcccc---------cccCCCCCCCEEecCCCCCc
Q 022897          223 NLKTLDLRDCGITT-I--QGLAKLKNLEALDLSWNNINGSLES---------QGLADLPNLKILDLRDCGMT  282 (290)
Q Consensus       223 ~L~~L~l~~n~l~~-~--~~l~~~~~L~~L~l~~n~l~~~i~~---------~~l~~l~~L~~L~L~~n~l~  282 (290)
                      +|++|++++|.+++ +  ..+..+++|++|++++|.+++.+|.         ..+..+++|+.|+  +|.++
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            55555555555555 1  2455566666666666655533322         1244556666664  44443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.51  E-value=9e-16  Score=132.90  Aligned_cols=187  Identities=21%  Similarity=0.222  Sum_probs=128.4

Q ss_pred             CCCCcEEECCCCcccCccchhhhhhcCC-CCCCcEEECCCCcCCCCchhhcc-CCCCCCEEEccCCCCCCCcchh---hc
Q 022897           95 FEELQSLNLSDNWFRGFYENKAYDSFGS-LKQLKILDLGCNFFNDSILPYLN-TLTSLTTLILYSNSIEGSGTMQ---GL  169 (290)
Q Consensus        95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~---~~  169 (290)
                      ++.|++|++++|.++......+...+.. .+.|++|+|++|.++......+. .+++|++|+|++|.+++.....   .+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3578999999999987665555545553 37999999999998754444333 3578999999999987543221   12


Q ss_pred             -ccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCCCC----
Q 022897          170 -ANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGITT----  236 (290)
Q Consensus       170 -~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l~~----  236 (290)
                       ...++|++|++++|.+.+.+  .+.. .+...++|++|+|++|.++      +...+...++|++|++++|.+++    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             34678999999999863221  1222 4577889999999999987      24566777899999999999987    


Q ss_pred             --ccccccCCCCCEEeCCCCCCCCcccccccCCC---C--CCCEEe--cCCCCCcc
Q 022897          237 --IQGLAKLKNLEALDLSWNNINGSLESQGLADL---P--NLKILD--LRDCGMTT  283 (290)
Q Consensus       237 --~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l---~--~L~~L~--L~~n~l~~  283 (290)
                        ...+...++|++|+|++|.+++..... +..+   .  .|+.+.  +..+.++.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~-L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQV-LRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHH-HHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHH-HHHHhcCCCccchhhHhhhcCCccCH
Confidence              234556789999999999998433322 2222   2  266676  66666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.48  E-value=3e-15  Score=129.62  Aligned_cols=161  Identities=20%  Similarity=0.237  Sum_probs=104.4

Q ss_pred             CCCCcEEECCCCcCCCCchhhccC-----CCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCc--cchhh
Q 022897          123 LKQLKILDLGCNFFNDSILPYLNT-----LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGS--LTRLG  195 (290)
Q Consensus       123 l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~  195 (290)
                      ++.|++|++++|.++......+..     .++|++|+|++|.++..........+++|++|++++|.+.+.+.  +.. .
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~-~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD-L  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH-H
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH-H
Confidence            456788888888876543333322     26788888888887654333333445678888888887522110  111 1


Q ss_pred             h-ccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCc---
Q 022897          196 L-ANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGS---  259 (290)
Q Consensus       196 ~-~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~---  259 (290)
                      + ...++|++|+|++|.++      +...+...++|++|++++|.+++      ...+...++|++|+|++|.+++.   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            2 24577888888888876      33444567788888888888876      34456677888888888888742   


Q ss_pred             -ccccccCCCCCCCEEecCCCCCcccc
Q 022897          260 -LESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       260 -i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                       +... +...++|++|+|++|.|+...
T Consensus       230 ~l~~~-L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          230 ALARA-AREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHHHH-HHHCSSCCEEECTTSSCCHHH
T ss_pred             HHHHH-HHhCCCCCEEeccCCCCCHHH
Confidence             2222 445677888888888887543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.48  E-value=6.2e-15  Score=135.32  Aligned_cols=86  Identities=10%  Similarity=0.019  Sum_probs=47.3

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCC----CchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND----SILPYLNTLTSLTTLILYSNSIEGSGTMQGL  169 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  169 (290)
                      .+++|++|++++|.+.+.....+...+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+  .+..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHH
Confidence            567777777777766554322122233456677777777766652    233344556777777777766543  22334


Q ss_pred             ccCCCCCeeeCC
Q 022897          170 ANLRYLQVLDLS  181 (290)
Q Consensus       170 ~~l~~L~~L~l~  181 (290)
                      ..+++|++|++.
T Consensus       240 ~~~~~L~~L~l~  251 (592)
T 3ogk_B          240 KAAANLEEFCGG  251 (592)
T ss_dssp             HHCTTCCEEEEC
T ss_pred             hhhhHHHhhccc
Confidence            444444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.46  E-value=2.3e-14  Score=131.58  Aligned_cols=153  Identities=19%  Similarity=0.118  Sum_probs=89.2

Q ss_pred             CCCCCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCCCC---cchhhcccCCCCCeeeCCCCCCCCCCccch
Q 022897          121 GSLKQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGS---GTMQGLANLRYLQVLDLSWNENITSGSLTR  193 (290)
Q Consensus       121 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  193 (290)
                      ..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.   .....+..+++|++|++.+|.+   ..++.
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~---~~l~~  237 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI---LELVG  237 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG---GGGHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH---HHHHH
Confidence            3567778888877776554    334455677888888887777622   1223455677888888888764   23554


Q ss_pred             hhhccCCCccEEEcCCCCCC-----CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCC
Q 022897          194 LGLANLTNLKELDLRGCGIT-----TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLAD  267 (290)
Q Consensus       194 ~~~~~~~~L~~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~  267 (290)
                       .+..+++|++|+++.+...     ....+..+++|+.|+++++.... +..+..+++|++|++++|.+++......+..
T Consensus       238 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          238 -FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             -HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             -HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence             6677777777777643221     22344555566666666544333 4444556666666666666553333222344


Q ss_pred             CCCCCEEecC
Q 022897          268 LPNLKILDLR  277 (290)
Q Consensus       268 l~~L~~L~L~  277 (290)
                      +++|++|+++
T Consensus       317 ~~~L~~L~L~  326 (592)
T 3ogk_B          317 CPNLEVLETR  326 (592)
T ss_dssp             CTTCCEEEEE
T ss_pred             CcCCCEEecc
Confidence            5555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=7.5e-13  Score=101.83  Aligned_cols=102  Identities=26%  Similarity=0.213  Sum_probs=52.4

Q ss_pred             CCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEE
Q 022897          150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTL  227 (290)
Q Consensus       150 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L  227 (290)
                      .+.+++++|.++. ++ ..+  .++|++|++++|.+  . .+++..+..+++|++|+|++|+++ + +..+..+++|++|
T Consensus        11 ~~~l~~s~n~l~~-ip-~~~--~~~l~~L~L~~N~i--~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VP-TGI--PTTTQVLYLYDNQI--T-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTTSCCSS-CC-SCC--CTTCSEEECCSSCC--C-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEeCCCCcCc-cC-ccC--CCCCcEEEcCCCcC--C-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            4566666666554 12 122  24566666666654  2 222224555556666666666555 2 2234555555555


Q ss_pred             EccCCCCCC-c-cccccCCCCCEEeCCCCCCCC
Q 022897          228 DLRDCGITT-I-QGLAKLKNLEALDLSWNNING  258 (290)
Q Consensus       228 ~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~  258 (290)
                      ++++|.+++ + ..+..+++|++|+|++|.++.
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            555555555 2 235555555555555555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=1.2e-12  Score=101.12  Aligned_cols=100  Identities=23%  Similarity=0.218  Sum_probs=52.0

Q ss_pred             CEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCc-CCCCCCCCcEEE
Q 022897          151 TTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQ-GLADLPNLKTLD  228 (290)
Q Consensus       151 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~  228 (290)
                      +.++++++.++. ++. .+.  ++|++|++++|.+  . .+++..+..+++|++|+|++|+++ ++. .+..+++|++|+
T Consensus        15 ~~l~~~~n~l~~-iP~-~~~--~~L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPA-GIP--TDKQRLWLNNNQI--T-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSSCCSS-CCS-CCC--TTCSEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cEEEeCCCCCCc-cCC-CcC--CCCcEEEeCCCCc--c-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            456666666543 221 221  5566666666664  2 222224555566666666666555 222 234555566666


Q ss_pred             ccCCCCCC-cc-ccccCCCCCEEeCCCCCCC
Q 022897          229 LRDCGITT-IQ-GLAKLKNLEALDLSWNNIN  257 (290)
Q Consensus       229 l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~  257 (290)
                      +++|.+++ ++ .+..+++|++|+|++|.+.
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            66555555 22 2555555555555555555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=1.5e-12  Score=100.07  Aligned_cols=85  Identities=29%  Similarity=0.246  Sum_probs=72.2

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ++|++|++++|.+++..+.    .|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++. ++..+..+++|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCC
Confidence            6789999999999888776    788899999999999999877777778899999999999998864 44468888899


Q ss_pred             CeeeCCCCCC
Q 022897          176 QVLDLSWNEN  185 (290)
Q Consensus       176 ~~L~l~~n~~  185 (290)
                      ++|++++|.+
T Consensus       105 ~~L~L~~N~~  114 (170)
T 3g39_A          105 THIWLLNNPW  114 (170)
T ss_dssp             CEEECCSSCB
T ss_pred             CEEEeCCCCC
Confidence            9999999987

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=5.8e-16  Score=122.40  Aligned_cols=115  Identities=27%  Similarity=0.239  Sum_probs=98.7

Q ss_pred             hhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCC
Q 022897          167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKN  245 (290)
Q Consensus       167 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~  245 (290)
                      ..+..+++|++|++++|.+  . .++  .+..+++|++|++++|.++ ++..+..+++|++|++++|.+++.+.+..+++
T Consensus        42 ~~~~~l~~L~~L~ls~n~l--~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~  116 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNI--E-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEE--S-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHH
T ss_pred             HHHhcCCCCCEEECCCCCC--c-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCC
Confidence            3788899999999999996  3 355  6888999999999999998 66656667899999999999999768889999


Q ss_pred             CCEEeCCCCCCCCcccc-cccCCCCCCCEEecCCCCCcccccc
Q 022897          246 LEALDLSWNNINGSLES-QGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       246 L~~L~l~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      |++|++++|.+++ ++. ..+..+++|++|++++|++++.+|.
T Consensus       117 L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          117 LRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             SSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            9999999999984 443 3388999999999999999887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.36  E-value=2.1e-11  Score=106.51  Aligned_cols=183  Identities=12%  Similarity=0.166  Sum_probs=100.5

Q ss_pred             CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897           90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL  169 (290)
Q Consensus        90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  169 (290)
                      ..|..+++|+.+++.+|.+......    +|. ...|+.+.+..+ +.......|.++++|+.+++..+ ++ .+....|
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF  245 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAF  245 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTT
T ss_pred             HHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccc
Confidence            3344444455555444444433332    332 244444444422 32222334445555555555443 11 1122233


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-------CCcCCCCCCCCcEEEccCCCCCC--cccc
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-------TSQGLADLPNLKTLDLRDCGITT--IQGL  240 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~l~~L~~L~l~~n~l~~--~~~l  240 (290)
                      .. .+|+.+.+..+    ...++...|..+++|+.+.+.++.+.       ...++..+++|+.+.+.. .++.  ...|
T Consensus       246 ~~-~~L~~i~lp~~----i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF  319 (401)
T 4fdw_A          246 RE-SGITTVKLPNG----VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL  319 (401)
T ss_dssp             TT-CCCSEEEEETT----CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred             cc-CCccEEEeCCC----ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence            33 44555555222    23444446677777777777766543       345667777777777773 3544  4556


Q ss_pred             ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       241 ~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ..+++|+.+.|..+ ++ .+...+|.++ +|+.+++.+|.+....+.+|
T Consensus       320 ~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          320 GGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             TTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred             cCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence            77778888888555 54 5666667777 88888888887777666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.36  E-value=2.2e-14  Score=131.68  Aligned_cols=184  Identities=14%  Similarity=0.129  Sum_probs=100.1

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCC-chhhccCCCCCCEEEc-----------------
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDS-ILPYLNTLTSLTTLIL-----------------  155 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l-----------------  155 (290)
                      .+++|++|++++|.+++...   ...+..+++|++|++++| +... ++.....+++|++|++                 
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l---~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDL---VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHH---HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             hhCCCCEEEccCCCCCHHHH---HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            46788888888887553321   113455666666666655 2211 1111123455555555                 


Q ss_pred             -----------------cCCCCCCCcchhhcccCCCCCeeeCC--C----CCCCC---CCccchhhhccCCCccEEEcCC
Q 022897          156 -----------------YSNSIEGSGTMQGLANLRYLQVLDLS--W----NENIT---SGSLTRLGLANLTNLKELDLRG  209 (290)
Q Consensus       156 -----------------~~n~~~~~~~~~~~~~l~~L~~L~l~--~----n~~~~---~~~~~~~~~~~~~~L~~L~l~~  209 (290)
                                       +.+.+++.........+++|+.|++.  +    +.+..   ...++. .+..+++|++|++++
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA-IVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH-HHHHCTTCCEEECCS
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH-HHhhCCCccEEeecC
Confidence                             44444332222112235666666665  2    22100   001111 245566677777755


Q ss_pred             CCCC--CCcCCC-CCCCCcEEEccCCCCCC--cccc-ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897          210 CGIT--TSQGLA-DLPNLKTLDLRDCGITT--IQGL-AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       210 n~l~--~~~~~~-~l~~L~~L~l~~n~l~~--~~~l-~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                       .++  ....+. .+++|++|++++|.+++  +..+ ..+++|+.|++++|.+++.........+++|++|++++|+++.
T Consensus       442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence             333  122222 26778888888888766  3333 5678888888888888644444435567888888888887743

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.35  E-value=3.7e-14  Score=130.17  Aligned_cols=175  Identities=21%  Similarity=0.134  Sum_probs=81.4

Q ss_pred             CCCCcEEECCCC-cccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhc----cCCCCCCEEEccCCC--CCCCcchh
Q 022897           95 FEELQSLNLSDN-WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL----NTLTSLTTLILYSNS--IEGSGTMQ  167 (290)
Q Consensus        95 ~~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~--~~~~~~~~  167 (290)
                      +++|++|++++| .++...   +...+..+++|++|++++|.+++..+..+    ..+++|++|++++|.  +.......
T Consensus       129 ~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDG---LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER  205 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHH---HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHH---HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence            455666666555 222211   11122345666666666665544333222    244566666666654  21111111


Q ss_pred             hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCC--------------------------C------CC
Q 022897          168 GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI--------------------------T------TS  215 (290)
Q Consensus       168 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--------------------------~------~~  215 (290)
                      ....+++|++|++.+|..  ...++. .+..+++|++|+++.+..                          .      .+
T Consensus       206 l~~~~~~L~~L~L~~~~~--~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~  282 (594)
T 2p1m_B          206 LVTRCPNLKSLKLNRAVP--LEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP  282 (594)
T ss_dssp             HHHHCTTCCEEECCTTSC--HHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG
T ss_pred             HHHhCCCCcEEecCCCCc--HHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH
Confidence            223456666666666532  222333 455556666665443321                          0      11


Q ss_pred             cCCCCCCCCcEEEccCCCCCC---ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEec
Q 022897          216 QGLADLPNLKTLDLRDCGITT---IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL  276 (290)
Q Consensus       216 ~~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L  276 (290)
                      ..+..+++|++|++++|.+++   ...+..+++|++|++++| +++.........+++|++|+|
T Consensus       283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            111134566666666666554   122445566666666655 322212221234566666666

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=9.7e-12  Score=106.59  Aligned_cols=89  Identities=20%  Similarity=0.144  Sum_probs=78.0

Q ss_pred             CCCCCCCcEEECCC-CcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897           92 FHPFEELQSLNLSD-NWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA  170 (290)
Q Consensus        92 ~~~~~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (290)
                      +..+++|++|+|++ |.+.+..+.    .|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++. ++..+.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~  101 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQ  101 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcc
Confidence            77788999999996 999988776    899999999999999999998888999999999999999999864 444565


Q ss_pred             cCCCCCeeeCCCCCCC
Q 022897          171 NLRYLQVLDLSWNENI  186 (290)
Q Consensus       171 ~l~~L~~L~l~~n~~~  186 (290)
                      .+. |+.|++.+|.+.
T Consensus       102 ~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCC-CCEEECCSSCCC
T ss_pred             cCC-ceEEEeeCCCcc
Confidence            555 999999999973

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=1.6e-11  Score=94.78  Aligned_cols=85  Identities=25%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      ++|++|++++|.+.+..+.    .|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++. ++..+..+++|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCC
Confidence            5677777777777766555    666777777777777777655444556677777777777777643 33346666777


Q ss_pred             CeeeCCCCCC
Q 022897          176 QVLDLSWNEN  185 (290)
Q Consensus       176 ~~L~l~~n~~  185 (290)
                      ++|++++|.+
T Consensus       108 ~~L~L~~N~~  117 (174)
T 2r9u_A          108 THIYLYNNPW  117 (174)
T ss_dssp             SEEECCSSCB
T ss_pred             CEEEeCCCCc
Confidence            7777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.32  E-value=7e-11  Score=103.15  Aligned_cols=160  Identities=14%  Similarity=0.144  Sum_probs=105.4

Q ss_pred             hcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897          119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN  198 (290)
Q Consensus       119 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  198 (290)
                      +|..+++|+.++++.|.++......|. +.+|+.+.+..+ +. .+....|..+++|+.+++..+    ...+....|..
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~----l~~I~~~aF~~  247 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN----VSTIGQEAFRE  247 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT----CCEECTTTTTT
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC----ccCcccccccc
Confidence            455555555555555555433233333 455555555533 22 223345666777777777654    23444445555


Q ss_pred             CCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCC-----C--ccccccCCCCCEEeCCCCCCCCcccccccCCCC
Q 022897          199 LTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGIT-----T--IQGLAKLKNLEALDLSWNNINGSLESQGLADLP  269 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~-----~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~  269 (290)
                       .+|+.+.+..+ ++  ...++..+++|+.+.+.+|.+.     .  ...|..+++|+.+++.+ .++ .++..+|.+++
T Consensus       248 -~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~  323 (401)
T 4fdw_A          248 -SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNR  323 (401)
T ss_dssp             -CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCC
T ss_pred             -CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCC
Confidence             67777777443 44  4677889999999999988775     2  55688899999999984 466 78887799999


Q ss_pred             CCCEEecCCCCCcccccccCC
Q 022897          270 NLKILDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       270 ~L~~L~L~~n~l~~~~~~~f~  290 (290)
                      +|+.+.|..+ ++.+.+.+|.
T Consensus       324 ~L~~l~lp~~-l~~I~~~aF~  343 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQINFSAFN  343 (401)
T ss_dssp             SCCEEEECTT-CCEECTTSSS
T ss_pred             CccEEEECcc-ccEEcHHhCC
Confidence            9999999654 7777777774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=1.2e-10  Score=99.67  Aligned_cols=100  Identities=20%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             EEEccCC-CCCCCcchhhcccCCCCCeeeCCC-CCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEE
Q 022897          152 TLILYSN-SIEGSGTMQGLANLRYLQVLDLSW-NENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTL  227 (290)
Q Consensus       152 ~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L  227 (290)
                      .++++++ .++. +| . +..+++|++|+|++ |.+   ..++...+..+++|++|+|++|.++  .+..|..+++|++|
T Consensus        12 ~v~~~~~n~l~~-ip-~-l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           12 GLRCTRDGALDS-LH-H-LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CEECCSSCCCTT-TT-T-SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             EEEcCCCCCCCc-cC-C-CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            4577776 6664 33 3 77777788888875 764   4455446777778888888888777  44566777778888


Q ss_pred             EccCCCCCC-cc-ccccCCCCCEEeCCCCCCCC
Q 022897          228 DLRDCGITT-IQ-GLAKLKNLEALDLSWNNING  258 (290)
Q Consensus       228 ~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~  258 (290)
                      +|++|.|++ ++ .+..++ |+.|+|.+|.+..
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            888887777 33 333343 7777777777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.04  E-value=2.6e-10  Score=97.97  Aligned_cols=182  Identities=19%  Similarity=0.230  Sum_probs=93.5

Q ss_pred             CCCCCCCcEEECCCCcccC-----ccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcch
Q 022897           92 FHPFEELQSLNLSDNWFRG-----FYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTM  166 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  166 (290)
                      ...+++|+.|.+.+.....     .....+...+..++.|+.|.|+++.-. .++. + .+++|++|++..|.+..... 
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l-  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV-  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH-
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH-
Confidence            3456677777775543211     000012224456677777777666311 1222 2 36777777777777654322 


Q ss_pred             hhcc--cCCCCCeeeCCCC--CCCCCC---ccch-hhhccCCCccEEEcCCCCCC--CCcCC---CCCCCCcEEEccCCC
Q 022897          167 QGLA--NLRYLQVLDLSWN--ENITSG---SLTR-LGLANLTNLKELDLRGCGIT--TSQGL---ADLPNLKTLDLRDCG  233 (290)
Q Consensus       167 ~~~~--~l~~L~~L~l~~n--~~~~~~---~~~~-~~~~~~~~L~~L~l~~n~l~--~~~~~---~~l~~L~~L~l~~n~  233 (290)
                      ..+.  .+++|+.|+|..+  ......   .+.. .....+++|++|++.+|.+.  ....+   ..+++|++|+++.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            1222  5677777776421  110000   1111 01124667777777777665  11111   245677777777777


Q ss_pred             CCC------ccccccCCCCCEEeCCCCCCCCcccccccCC-CCCCCEEecCCCC
Q 022897          234 ITT------IQGLAKLKNLEALDLSWNNINGSLESQGLAD-LPNLKILDLRDCG  280 (290)
Q Consensus       234 l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~-l~~L~~L~L~~n~  280 (290)
                      +++      +..+..+++|+.|++++|.+++..... +.. +  ...++++.++
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~-l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE-LQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH-HHHHC--CSEEECCSBC
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH-HHHHc--CCEEEecCCc
Confidence            765      122345677777777777766433222 221 2  2456666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.93  E-value=4.9e-10  Score=96.27  Aligned_cols=160  Identities=18%  Similarity=0.160  Sum_probs=105.0

Q ss_pred             hcCCCCCCcEEECCCCcC---------CCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCC
Q 022897          119 SFGSLKQLKILDLGCNFF---------NDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSG  189 (290)
Q Consensus       119 ~l~~l~~L~~L~l~~n~l---------~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  189 (290)
                      +...+++|+.|.+.....         .+.+...+..+|+|+.|++++|.-.  ..+ .+ .+++|++|++..+.+  ..
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l--~l~-~~-~~~~L~~L~L~~~~l--~~  207 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL--SIG-KK-PRPNLKSLEIISGGL--PD  207 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC--BCC-SC-BCTTCSEEEEECSBC--CH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc--eec-cc-cCCCCcEEEEecCCC--Ch
Confidence            455678889998865432         1234555677899999999887311  111 23 378999999988775  22


Q ss_pred             ccch-hhhccCCCccEEEcCC--CC------CC-CCcCC--CCCCCCcEEEccCCCCCC--cccc---ccCCCCCEEeCC
Q 022897          190 SLTR-LGLANLTNLKELDLRG--CG------IT-TSQGL--ADLPNLKTLDLRDCGITT--IQGL---AKLKNLEALDLS  252 (290)
Q Consensus       190 ~~~~-~~~~~~~~L~~L~l~~--n~------l~-~~~~~--~~l~~L~~L~l~~n~l~~--~~~l---~~~~~L~~L~l~  252 (290)
                      .... .....+++|++|+|+.  +.      +. +...+  ..+++|++|++.+|.+.+  ...+   ..+++|++|+|+
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            2111 1223789999999853  21      11 11222  357899999999999876  2222   357899999999


Q ss_pred             CCCCCCcccccc---cCCCCCCCEEecCCCCCccc
Q 022897          253 WNNINGSLESQG---LADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       253 ~n~l~~~i~~~~---l~~l~~L~~L~L~~n~l~~~  284 (290)
                      .|.+.+..+..+   +..+++|+.|+|++|.|+..
T Consensus       288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            999885322221   34578999999999988754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.90  E-value=8.8e-10  Score=85.75  Aligned_cols=122  Identities=17%  Similarity=0.102  Sum_probs=73.5

Q ss_pred             cCCCCCCCcEEECCCC-cccCccchhhhhhcCCCCCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCCCCc-
Q 022897           91 LFHPFEELQSLNLSDN-WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGSG-  164 (290)
Q Consensus        91 ~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-  164 (290)
                      .+...+.|++|+|++| .+.......+.+.+...+.|++|+|++|.+...    +...+...++|++|+|++|.+.+.. 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3455677888888877 776554445555667777788888887777543    2333445567777777777776432 


Q ss_pred             --chhhcccCCCCCeeeC--CCCCCCCCCc--cchhhhccCCCccEEEcCCCCCC
Q 022897          165 --TMQGLANLRYLQVLDL--SWNENITSGS--LTRLGLANLTNLKELDLRGCGIT  213 (290)
Q Consensus       165 --~~~~~~~l~~L~~L~l--~~n~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~  213 (290)
                        ....+...+.|++|++  ++|.+.+.+.  +.. .+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence              1234555667777777  6666522211  111 3445566666666666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.86  E-value=4e-10  Score=92.30  Aligned_cols=153  Identities=16%  Similarity=0.101  Sum_probs=91.6

Q ss_pred             CCCCCCceEeccccCcEEeeccccc---ccccccc---------------cccccccCCCcCCCCCCCcE--EECCCCcc
Q 022897           49 CCDDWEGVKCNATTRRVMQLSLTYT---ERLNYYD---------------RTSASLLNMSLFHPFEELQS--LNLSDNWF  108 (290)
Q Consensus        49 ~c~~w~gv~c~~~~~~v~~l~l~~~---~~l~~l~---------------~~~~~~~~~~~~~~~~~L~~--L~l~~n~l  108 (290)
                      .| .|.|+.|+....+|..+..++.   .....+.               +...+.++.+.+...+.|..  ++++.|..
T Consensus        77 l~-~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~  155 (267)
T 3rw6_A           77 LK-AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR  155 (267)
T ss_dssp             HH-HTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred             HH-hcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence            46 8999999865445544433331   1000010               11122334444555555655  55666643


Q ss_pred             cCccchhhhhhcCCCCCCcEEECCCCcCCC--CchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCC
Q 022897          109 RGFYENKAYDSFGSLKQLKILDLGCNFFND--SILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENI  186 (290)
Q Consensus       109 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  186 (290)
                      ... +..+......++.|++|+|++|.+++  .++..+..+++|+.|+|++|.+++......+..+ +|++|++.+|.+ 
T Consensus       156 ~~~-~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl-  232 (267)
T 3rw6_A          156 SCM-AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSL-  232 (267)
T ss_dssp             HHH-HHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTT-
T ss_pred             HHH-HHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcC-
Confidence            221 11111122467899999999999987  4456667899999999999999874222334444 899999999987 


Q ss_pred             CCCccc------hhhhccCCCccEEE
Q 022897          187 TSGSLT------RLGLANLTNLKELD  206 (290)
Q Consensus       187 ~~~~~~------~~~~~~~~~L~~L~  206 (290)
                       .+.++      ...+..+++|+.|+
T Consensus       233 -~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          233 -CDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             -GGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             -ccccCcchhHHHHHHHHCcccCeEC
Confidence             44333      12467788888775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.82  E-value=1.6e-09  Score=84.27  Aligned_cols=43  Identities=12%  Similarity=-0.016  Sum_probs=22.6

Q ss_pred             hcCCCCCCcEEECCCC-cCCCC----chhhccCCCCCCEEEccCCCCC
Q 022897          119 SFGSLKQLKILDLGCN-FFNDS----ILPYLNTLTSLTTLILYSNSIE  161 (290)
Q Consensus       119 ~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~  161 (290)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            4555666666666666 55432    2233344455555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.61  E-value=3.7e-09  Score=86.57  Aligned_cols=79  Identities=29%  Similarity=0.368  Sum_probs=55.6

Q ss_pred             ccCCCccEEEcCCCCCCC----CcCCCCCCCCcEEEccCCCCCCccccccCC--CCCEEeCCCCCCCCcccc------cc
Q 022897          197 ANLTNLKELDLRGCGITT----SQGLADLPNLKTLDLRDCGITTIQGLAKLK--NLEALDLSWNNINGSLES------QG  264 (290)
Q Consensus       197 ~~~~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~--~L~~L~l~~n~l~~~i~~------~~  264 (290)
                      .++++|+.|+|++|.++.    +..+..+++|+.|+|++|.+++...+..+.  +|++|+|++|.+.+.+|.      ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            567788888888888773    233346788888888888888755455444  788888888888765542      23


Q ss_pred             cCCCCCCCEEe
Q 022897          265 LADLPNLKILD  275 (290)
Q Consensus       265 l~~l~~L~~L~  275 (290)
                      +..+|+|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56678888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.54  E-value=2.3e-06  Score=74.37  Aligned_cols=182  Identities=14%  Similarity=0.138  Sum_probs=96.3

Q ss_pred             CCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCC------
Q 022897           88 NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIE------  161 (290)
Q Consensus        88 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------  161 (290)
                      ....|..+.+|+.+.+.++. ......    .|..+.+|+.+.+..+ +.......|..+..|+.+.+..+...      
T Consensus       154 ~~~aF~~c~~L~~i~l~~~~-~~I~~~----~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~  227 (394)
T 4fs7_A          154 GDEAFATCESLEYVSLPDSM-ETLHNG----LFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFAL  227 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTC-CEECTT----TTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTT
T ss_pred             chhhhcccCCCcEEecCCcc-ceeccc----cccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhc
Confidence            34456777778888776542 222232    5667777777777554 22122233444445544444332110      


Q ss_pred             --------------CCcchhhcccCCCCCeeeCCCCCCCC-----------------CCccchhhhccCCCccEEEcCCC
Q 022897          162 --------------GSGTMQGLANLRYLQVLDLSWNENIT-----------------SGSLTRLGLANLTNLKELDLRGC  210 (290)
Q Consensus       162 --------------~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~~~~~~~~L~~L~l~~n  210 (290)
                                    ..+....+..+..|+.+.+..+...-                 ...++...+..+.+|+.+.+..+
T Consensus       228 ~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          228 SKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             TTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT
T ss_pred             ccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc
Confidence                          00111234455666666665442100                 00122223445556666666544


Q ss_pred             CCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCC
Q 022897          211 GIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC  279 (290)
Q Consensus       211 ~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n  279 (290)
                       +.  ...++..+.+|+.+++..+ ++.  ..+|..+.+|+.+.+..+ ++ .+...+|.++++|+.+++..+
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence             33  3455667777777777543 443  445666777777777665 44 566666777777777777543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.42  E-value=5.7e-06  Score=71.85  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             CCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCC
Q 022897          217 GLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC  279 (290)
Q Consensus       217 ~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n  279 (290)
                      ++..+.+|+.+.+..+ ++.  ..+|..+.+|+.+.+..+ ++ .|...+|.++.+|+.+++.++
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence            4445555555555433 222  334555556666666433 33 455555666666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.31  E-value=6.4e-06  Score=71.55  Aligned_cols=63  Identities=13%  Similarity=0.224  Sum_probs=33.0

Q ss_pred             cCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEc
Q 022897           87 LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLIL  155 (290)
Q Consensus        87 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  155 (290)
                      +....|..+.+|+++.+..+ ++.....    +|.++.+|+.+++..+ ++......|..+..|+.+.+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~  124 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEF----AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL  124 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchh----HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence            34455666667777776543 4443333    6666677777766543 22222334444555544443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.25  E-value=4.7e-05  Score=65.56  Aligned_cols=137  Identities=16%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCC
Q 022897          144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLP  222 (290)
Q Consensus       144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~  222 (290)
                      +..+..|+.+.+..+- . .+....+..+..|+.+.+..+    ...+....+..+.+|+.+.+..+--. ...++..+.
T Consensus       213 f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~----v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~  286 (379)
T 4h09_A          213 FSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN----VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT----CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCT
T ss_pred             cccccccceeeeccce-e-EEccccccCCccceEEEcCCC----ccEeCccccceeehhccccccccceecccccccccc
Confidence            3345556666554331 1 112235566777777777554    22344446777778888888655323 455677888


Q ss_pred             CCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          223 NLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       223 ~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      +|+.+.+.++.++.  ...|..+.+|+.+.|..+ ++ .|...+|.++.+|+.+.+..+ ++.+...+|
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence            88888888887776  456778888888888655 55 677767888888888888654 666655555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=4.4e-07  Score=69.17  Aligned_cols=85  Identities=20%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCCCchhhccCC----CCCCEEEccCCC-CCCCcchhhc
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FNDSILPYLNTL----TSLTTLILYSNS-IEGSGTMQGL  169 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~~~  169 (290)
                      ..|+.|+++++.++...-.    .+..+++|++|+|++|. +++.....++.+    ++|++|++++|. +++.... .+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-AL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HG
T ss_pred             ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HH
Confidence            3588888888876654333    56778888888888874 665555556554    468888888875 6655443 56


Q ss_pred             ccCCCCCeeeCCCCCC
Q 022897          170 ANLRYLQVLDLSWNEN  185 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~  185 (290)
                      ..+++|++|+++++..
T Consensus       136 ~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             GGCTTCCEEEEESCTT
T ss_pred             hcCCCCCEEECCCCCC
Confidence            6788888888888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.20  E-value=0.00013  Score=63.25  Aligned_cols=91  Identities=15%  Similarity=0.284  Sum_probs=51.4

Q ss_pred             hhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCC
Q 022897          195 GLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL  271 (290)
Q Consensus       195 ~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L  271 (290)
                      .|..+..|+.+.+..+... ...++..+.+|+.+.+.. .++.  ...|..+.+|+.++|..+ ++ .|...+|.++.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCC
Confidence            4555566666666554444 445556666666666642 2333  334556666666666543 33 4555556666666


Q ss_pred             CEEecCCCCCcccccccC
Q 022897          272 KILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       272 ~~L~L~~n~l~~~~~~~f  289 (290)
                      +.+.|..+ ++.+...+|
T Consensus       337 ~~i~ip~s-v~~I~~~aF  353 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAF  353 (394)
T ss_dssp             CEEEECTT-CCBCCGGGG
T ss_pred             CEEEECcc-cCEEhHhHh
Confidence            66666433 555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.20  E-value=9.3e-05  Score=63.70  Aligned_cols=93  Identities=24%  Similarity=0.233  Sum_probs=67.1

Q ss_pred             hhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCC
Q 022897          195 GLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL  271 (290)
Q Consensus       195 ~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L  271 (290)
                      .+..+..|+.+.+..+--. ...++..+.+|+.+.+..+ ++.  ...+..+.+|+.+.+.++.++ .++..+|.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCC
Confidence            4555666777777655222 4556677778888887654 333  456778889999999888887 7887779999999


Q ss_pred             CEEecCCCCCcccccccCC
Q 022897          272 KILDLRDCGMTTIQGKIFK  290 (290)
Q Consensus       272 ~~L~L~~n~l~~~~~~~f~  290 (290)
                      +.+.|..+ ++.+...+|+
T Consensus       313 ~~i~lp~~-l~~I~~~aF~  330 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFK  330 (379)
T ss_dssp             CEEECCTT-CCEECTTTTT
T ss_pred             CEEEcCcc-ccEEHHHHhh
Confidence            99999754 7777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=8.4e-07  Score=67.60  Aligned_cols=82  Identities=26%  Similarity=0.382  Sum_probs=35.0

Q ss_pred             CCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC----CCccEEEcCCCC-CC--CCcCCCCC
Q 022897          149 SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL----TNLKELDLRGCG-IT--TSQGLADL  221 (290)
Q Consensus       149 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~----~~L~~L~l~~n~-l~--~~~~~~~l  221 (290)
                      .|++|++++|.++..... .+..+++|++|+|++|...+...+.  .+..+    ++|++|+|++|. ++  ....+..+
T Consensus        62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~--~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLE--RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHH--HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHH--HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            344444444444433332 3344445555555554421111111  22222    245555555553 43  12223445


Q ss_pred             CCCcEEEccCCC
Q 022897          222 PNLKTLDLRDCG  233 (290)
Q Consensus       222 ~~L~~L~l~~n~  233 (290)
                      ++|++|++++|.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            566666666653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.08  E-value=7.1e-06  Score=63.68  Aligned_cols=119  Identities=12%  Similarity=0.099  Sum_probs=79.1

Q ss_pred             CCCCCCCcEEECCCC-cccCccchhhhhhcCCCCCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCCCCcc-
Q 022897           92 FHPFEELQSLNLSDN-WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGSGT-  165 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~-  165 (290)
                      +.+-+.|++|+|+++ .+.......+.+.+...+.|++|+|++|.+...    +...+...++|++|+|+.|.+.+... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445577889999885 776555455666788888899999999888643    34445567888899999888875432 


Q ss_pred             --hhhcccCCCCCeeeCCCCCCCCCCc-----cchhhhccCCCccEEEcCCCC
Q 022897          166 --MQGLANLRYLQVLDLSWNENITSGS-----LTRLGLANLTNLKELDLRGCG  211 (290)
Q Consensus       166 --~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~  211 (290)
                        .+.+..-+.|++|+|.++.....+.     +.. .+...+.|+.|+++.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence              2345555678888887542101231     222 45666778888777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.94  E-value=7.9e-06  Score=63.40  Aligned_cols=43  Identities=9%  Similarity=0.059  Sum_probs=22.3

Q ss_pred             hcCCCCCCcEEECCCC-cCCCC----chhhccCCCCCCEEEccCCCCC
Q 022897          119 SFGSLKQLKILDLGCN-FFNDS----ILPYLNTLTSLTTLILYSNSIE  161 (290)
Q Consensus       119 ~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~  161 (290)
                      .+..-+.|++|+|+++ .+...    +...+...++|+.|+|++|.+.
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            4455566666666654 44321    2333444555555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.27  E-value=0.00052  Score=49.53  Aligned_cols=52  Identities=21%  Similarity=0.105  Sum_probs=32.6

Q ss_pred             EEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCC
Q 022897          204 ELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNIN  257 (290)
Q Consensus       204 ~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~  257 (290)
                      .++.+++.++   +|..  -..+|++|+|++|.|+.  ...|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666664   2322  22357777777777776  344666777777777777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.28  E-value=0.012  Score=42.28  Aligned_cols=35  Identities=26%  Similarity=0.105  Sum_probs=14.4

Q ss_pred             CcEEECCCCcCCCCchhhccCCCCCCEEEccCCCC
Q 022897          126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSI  160 (290)
Q Consensus       126 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  160 (290)
                      |++|+|++|.++...+..|..+++|++|+|++|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            34444444444433333333444444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-08
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 4e-19
 Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 22/230 (9%)

Query: 49  CCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWF 108
              +   +  N  +   +   LT  E L   +     + +++       L  L+L+ N  
Sbjct: 175 TTLERLDISSNKVSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 231

Query: 109 RGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQG 168
           +         +  SL  L  LDL  N  ++  L  L+ LT LT L L +N I     + G
Sbjct: 232 KDI------GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAG 283

Query: 169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLD 228
           L  L  L++ +    +             NL NL  L L    I+    ++ L  L+ L 
Sbjct: 284 LTALTNLELNENQLEDISPIS--------NLKNLTYLTLYFNNISDISPVSSLTKLQRLF 335

Query: 229 LRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
             +  ++ +  LA L N+  L    N I+       LA+L  +  L L D
Sbjct: 336 FANNKVSDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 5e-12
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 13/161 (8%)

Query: 124 KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN 183
             L  L L  N   D  +  L +LT+LT L L +N I     + GL  L  L++     +
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 276

Query: 184 ENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKL 243
                       LA LT L  L+L    +     +++L NL  L L    I+ I  ++ L
Sbjct: 277 NIS--------PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 328

Query: 244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284
             L+ L  + N ++       LA+L N+  L      ++ +
Sbjct: 329 TKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 5e-10
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 13/193 (6%)

Query: 92  FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLT 151
               + L +L   +       +         L  L+ L    N  +D     + T  +L 
Sbjct: 165 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLD 222

Query: 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG 211
            L L  N ++  GT   LA+L  L  LDL+ N+      L+      LT L EL L    
Sbjct: 223 ELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQ 274

Query: 212 ITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL 271
           I+    LA L  L  L+L +  +  I  ++ LKNL  L L +NNI+       ++ L  L
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKL 331

Query: 272 KILDLRDCGMTTI 284
           + L   +  ++ +
Sbjct: 332 QRLFFANNKVSDV 344

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 197 ANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
             L    +  L    +T +    DL  + TL     GI +I G+  L NL  ++ S N +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78

Query: 257 NGSLESQGLADLPNLKILDLRDCGM 281
                   L +L  L  + + +  +
Sbjct: 79  TDITP---LKNLTKLVDILMNNNQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 6e-08
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
             +L  +  L     GI +  G+  L NL  ++  +  +T I  L  L  L  + ++ N 
Sbjct: 40  QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 99

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 88  NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTL 147
           ++S     + L  L L  N               SL +L+ L    N    S +  L  L
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFANNKV--SDVSSLANL 350

Query: 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWN 183
           T++  L    N I        LANL  +  L L+  
Sbjct: 351 TNINWLSAGHNQISDL---TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 8/115 (6%)

Query: 44  GMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNL 103
            +                 +      ++  + L Y      ++ ++S      +LQ L  
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 336

Query: 104 SDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSN 158
           ++N            S  +L  +  L  G N  +D  L  L  LT +T L L   
Sbjct: 337 ANNKVSDV------SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 219 ADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
             L       L    +T       L  +  L      I  S++  G+  L NL  ++  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSN 75

Query: 279 CGMTTI 284
             +T I
Sbjct: 76  NQLTDI 81

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLS 181
           +L +     LG     D++      L  +TTL      I+   ++ G+  L  L  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74

Query: 182 WNENITSGSLTRL-GLANLTNLKEL 205
            N       LT +  L NLT L ++
Sbjct: 75  NN------QLTDITPLKNLTKLVDI 93

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.6 bits (128), Expect = 8e-10
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQ-GLADLPNLKTLDLRDCGI 234
           +VL L+   ++T        L  L  +  LDL    +      LA L  L+ L   D  +
Sbjct: 1   RVLHLAHK-DLTVLC----HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 55

Query: 235 TTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286
             + G+A L  L+ L L  N +  S   Q L   P L +L+L+   +   +G
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 99  QSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSN 158
           + L+L+                  L  +  LDL  N            L +L  L +   
Sbjct: 1   RVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQA 50

Query: 159 SIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGL 218
           S      + G+ANL  LQ L L  N  +   +  +  L +   L  L+L+G  +   +G+
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNN-RLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 219 AD-----LPNLKTL 227
            +     LP++ ++
Sbjct: 109 QERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENI 186
           ++L L       ++L +L  L  +T L L  N +        LA LR L+VL  S N   
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALE 56

Query: 187 TSGSLTRLGLANLTNLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGITTIQGL--- 240
                   G+ANL  L+EL L    +  S   Q L   P L  L+L+   +   +G+   
Sbjct: 57  N-----VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

Query: 241 --AKLKNLEAL 249
               L ++ ++
Sbjct: 112 LAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 85  SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL 144
            L  +        +  L+LS N  R         +  +L+ L++L    +      +  +
Sbjct: 9   DLTVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQ--ASDNALENVDGV 61

Query: 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN-LTNLK 203
             L  L  L+L +N ++ S  +Q L +   L +L+L  N ++      +  LA  L ++ 
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVS 120

Query: 204 EL 205
            +
Sbjct: 121 SI 122

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 17/188 (9%)

Query: 98  LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157
              L+L +N      +      F +LK L  L L  N  +         L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 158 NSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS-- 215
           N +      + L       + +L  +EN  +  + +     L  +  ++L    + +S  
Sbjct: 89  NQL------KELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 216 --QGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI 273
                  +  L  + + D  ITTI       +L  L L  N I     +  L  L NL  
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAAS-LKGLNNLAK 199

Query: 274 LDLRDCGM 281
           L L    +
Sbjct: 200 LGLSFNSI 207

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 17/199 (8%)

Query: 87  LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNT 146
           +  S+F+   ++  + L  N  +         +F  +K+L  + +               
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSS--GIENGAFQGMKKLSYIRIADTNITTI---PQGL 169

Query: 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206
             SLT L L  N I        L  L  L  L LS+N      + +     +L  L   +
Sbjct: 170 PPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQG--------LAKLKNLEALDLSWNNIN- 257
            +   +       D   ++ + L +  I+ I            K  +   + L  N +  
Sbjct: 229 NKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286

Query: 258 GSLESQGLADLPNLKILDL 276
             ++      +     + L
Sbjct: 287 WEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 50/288 (17%), Positives = 85/288 (29%), Gaps = 66/288 (22%)

Query: 46  PSDCCDDWEGVKC-NATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLS 104
           P  C      V+C +    +V +     T  L+  +    + +    F   + L +L L 
Sbjct: 5   PFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN-NKITEIKDGDFKNLKNLHTLILI 63

Query: 105 DNWFRGFYENKAYDSFGSLKQLKILDLGCN---------------------FFNDSILPY 143
           +N            +F  L +L+ L L  N                              
Sbjct: 64  NNKISKISP----GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 119

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQG-LANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
            N L  +  + L +N ++ SG   G    ++ L  + ++        ++T +      +L
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT------NITTIPQGLPPSL 173

Query: 203 KELDLRGCGITT--SQGLADLPNLKTLDLRDCG-------------------------IT 235
            EL L G  IT   +  L  L NL  L L                             + 
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

Query: 236 TIQGLAKLKNLEALDLSWNNI-----NGSLESQGLADLPNLKILDLRD 278
              GLA  K ++ + L  NNI     N            +   + L  
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.3 bits (129), Expect = 3e-09
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 197 ANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
             L N  ++      +T +   ADL  + TL     G+TTI+G+  L NL  L+L  N I
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 257 N 257
            
Sbjct: 76  T 76

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 9e-08
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLS 252
           LANL+ L  L      I+    LA LPNL  + L++  I+ +  LA   NL  + L+
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 218 LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277
           LA+L  L TL   D  I+ I  LA L NL  + L  N I+       LA+  NL I+ L 
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLT 225

Query: 278 D 278
           +
Sbjct: 226 N 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 195 GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRD 231
            LA+L NL E+ L+   I+    LA+  NL  + L +
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 9e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279
           L N   +      +T     A L  +  L      +  ++E  G+  L NL  L+L+D 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDN 73

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 47/202 (23%)

Query: 122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLS 181
           +L     +  G +   D++      L  +TTL  +   +    T++G+  L  L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 182 WNENITSGSLTRLG---------------------------------------LANLTNL 202
            N+      L  L                                        LA L+NL
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 203 KELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLES 262
           + L L    IT    LA L NL+ L + +  ++ +  LA L  L  L    N I+     
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--- 188

Query: 263 QGLADLPNLKILDLRDCGMTTI 284
             LA LPNL  + L++  ++ +
Sbjct: 189 SPLASLPNLIEVHLKNNQISDV 210

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 4e-09
 Identities = 60/316 (18%), Positives = 100/316 (31%), Gaps = 62/316 (19%)

Query: 7   CLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDD-WEGVKCNATTR-- 63
           C   ++ ALL+IK           +   L SW+       +DCC+  W GV C+  T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLPT-----TDCCNRTWLGVLCDTDTQTY 50

Query: 64  RVMQLSL------------------TYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD 105
           RV  L L                   Y   L      +             +L  L ++ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 106 NWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGT 165
               G   +           L  LD   N  + ++ P +++L +L  +    N I G+  
Sbjct: 111 TNVSGAIPDFLSQIK----TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL---------------------KE 204
               +  +    + +S N        T   L                           K 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 205 LDLRGCGITTSQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLEALDLSWNNINGSLES 262
              +         +    NL  LDLR+  I     QGL +LK L +L++S+NN+ G +  
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 263 QGLADLPNLKILDLRD 278
               +L    +    +
Sbjct: 287 --GGNLQRFDVSAYAN 300

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 130 DLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSG 189
           DL  N    ++   L  L  L +L +  N++   G +    NL+   V   + N+ +   
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL--CGEIPQGGNLQRFDVSAYANNKCLCGS 307

Query: 190 SL 191
            L
Sbjct: 308 PL 309

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 197 ANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
             L    +  L    +T +    DL  + TL     GI +I G+  L NL  ++ S N +
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 74

Query: 257 NG 258
             
Sbjct: 75  TD 76

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 47/191 (24%)

Query: 123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSW 182
           L +     LG     D++      L  +TTL      I+   ++ G+  L  L  ++ S 
Sbjct: 17  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 71

Query: 183 NENITSGSL---------------------------------------TRLGLANLTNLK 203
           N+      L                                           L NLTNL 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 204 ELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQ 263
            L+L    I+    L+ L +L+ L+     +T ++ LA L  LE LD+S N ++      
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD---IS 188

Query: 264 GLADLPNLKIL 274
            LA L NL+ L
Sbjct: 189 VLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 219 ADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
             L       L    +T       L  +  L      I  S++  G+  L NL  ++  +
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSN 71

Query: 279 CGM 281
             +
Sbjct: 72  NQL 74

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 2e-08
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 201 NLKELDLRGCGITT---SQGLADLPNLKTLDLRDCGITTI------QGLAKLKNLEALDL 251
           +++ LD++   ++    ++ L  L   + + L DCG+T          L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 252 SWNNING----SLESQGLADLPNLKILDLRDCGM 281
             N +       +          ++ L L++C +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 2e-07
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 149 SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG--LANLTNLKELD 206
            + +L +    +  +   + L  L+  QV+ L     +T      +   L     L EL+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELN 61

Query: 207 LRGCGITTS--QGLADL-----PNLKTLDLRDCG 233
           LR   +       +          ++ L L++C 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 143 YLNTLTSLTTLILYSNSIEGSGTM---QGLANLRYLQVLDLSWNENITSGSLTRLGLA-- 197
                + L  L L    +  S        L     L+ LDLS N  +    + +L  +  
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVR 422

Query: 198 -NLTNLKELDLRGCGIT--TSQGLADL----PNLKTL 227
                L++L L     +      L  L    P+L+ +
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 5e-05
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 223 NLKTLDLRDCGITT---IQGLAKLKNLEALDLSWNNING---SLESQGLADLPNLKILDL 276
           ++++LD++   ++     + L  L+  + + L    +        S  L   P L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 277 RDCGMT 282
           R   + 
Sbjct: 63  RSNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 6e-05
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 97  ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND----SILPYLNTLTSLTT 152
           ++QSL++         + +  +    L+Q +++ L      +     I   L    +L  
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 153 LILYSNSIEGSGTMQGLANLRY----LQVLDLSWN 183
           L L SN +   G    L  L+     +Q L L   
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 7e-05
 Identities = 21/125 (16%), Positives = 34/125 (27%), Gaps = 5/125 (4%)

Query: 45  MPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLS 104
               C          ++     +  L      N  +      L   L  P   L+ L L+
Sbjct: 318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 377

Query: 105 DNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-----NTLTSLTTLILYSNS 159
           D        +    +  +   L+ LDL  N   D+ +  L          L  L+LY   
Sbjct: 378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437

Query: 160 IEGSG 164
                
Sbjct: 438 WSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 21/109 (19%)

Query: 171 NLRYLQVLDLSWNENITSGSLTRLG--LANLTNLKELDLRGCGITTSQGLADLPNLKTLD 228
               L+VL L+   +++  S + L   L    +L+ELDL    +    G+  L  ++++ 
Sbjct: 367 PGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQL--VESVR 422

Query: 229 LRDCGITTIQGLAKLKNLEALDLSWNNINGSLES---QGLADLPNLKIL 274
              C             LE L L     +  +E        D P+L+++
Sbjct: 423 QPGC------------LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 222 PNLKTLDLRDCGITTI------QGLAKLKNLEALDLSWNNINGS----LESQGLADLPNL 271
             L+ L L DC ++          L    +L  LDLS N +  +    L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 272 KILDLRDCGMTTIQGKIFK 290
           + L L D   +       +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQ 447

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 9e-08
 Identities = 12/68 (17%), Positives = 28/68 (41%)

Query: 198 NLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNIN 257
                 + +L+   +T +    +L ++  +   +  I ++QG+  L N+  L L+ N + 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT 81

Query: 258 GSLESQGL 265
                  L
Sbjct: 82  DIKPLANL 89

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 9e-07
 Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 25/196 (12%)

Query: 95  FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLI 154
           F E    NL               +   L  +  +    +      +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKK------SVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 155 LYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG----- 209
           L  N +     +  L NL +L + +    +  +   L +L   +L +    D+ G     
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 210 ---------CGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSL 260
                      IT    L+ L  L TL L D  I+ I  LA L  L+ L LS N+I+  L
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DL 193

Query: 261 ESQGLADLPNLKILDL 276
            +  LA L NL +L+L
Sbjct: 194 RA--LAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 220 DLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279
                   +L+   +T      +L +++ +  + ++I      QG+  LPN+  L L   
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGN 78

Query: 280 GMT 282
            +T
Sbjct: 79  KLT 81

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 193 RLGLANLTNLKELDLRGCGITTSQGL-ADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL 251
                N    +ELDLRG  I   + L A L     +D  D  I  + G   L+ L+ L +
Sbjct: 11  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 70

Query: 252 SWNNINGSLE 261
           + N I    E
Sbjct: 71  NNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 212 ITTSQGLADLPNLKTLDLRDCGITTIQGL-AKLKNLEALDLSWNNINGSLESQGLADLPN 270
           I  +    +    + LDLR   I  I+ L A L   +A+D S N I    +  G   L  
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRR 64

Query: 271 LKILDLRDCGMTT 283
           LK L + +  +  
Sbjct: 65  LKTLLVNNNRICR 77

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 90  SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTS 149
           +L    ++  +++ SDN  R        D F  L++LK L +  N            L  
Sbjct: 35  NLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88

Query: 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208
           LT LIL +NS+   G +  LA+L+ L  L +  N            +  +  ++ LD +
Sbjct: 89  LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 182 WNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLA 241
                 S +  R       +L+EL++    +     L   P L+ L      +  +  L 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL- 322

Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKI 273
             +NL+ L + +N +    +      + +L++
Sbjct: 323 -PQNLKQLHVEYNPLREFPDI--PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 7e-06
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG 280
            P+L+ L++ +  +  +  L     LE L  S+N++   +         NLK L +    
Sbjct: 283 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLA-EVPEL----PQNLKQLHVEYNP 335

Query: 281 MTTI 284
           +   
Sbjct: 336 LREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 193 RLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLS 252
           RL         EL+L   G+++   L   P+L++L      +T +  L   ++L++L + 
Sbjct: 31  RLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVD 86

Query: 253 WNNING 258
            NN+  
Sbjct: 87  NNNLKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 16/195 (8%)

Query: 36  PSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPF 95
            S     D   S                      LT     N   +T   L         
Sbjct: 172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 231

Query: 96  EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLIL 155
            +    +L +      + + + + F  L +L       N  ++ I    +   SL  L +
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 156 YSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS 215
            +N +         A    L+ L  S+N       L  +      NLK+L +    +   
Sbjct: 292 SNNKLIELP-----ALPPRLERLIASFN------HLAEVP-ELPQNLKQLHVEYNPLRE- 338

Query: 216 QGLADLP-NLKTLDL 229
               D+P +++ L +
Sbjct: 339 --FPDIPESVEDLRM 351

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203
           ++     +   L    +    +   L       VL+   +   T   +      N+  L 
Sbjct: 16  MSKRYDGSQQALDLKGL---RSDPDLVAQNIDVVLNRRSSMAATLRIIEE----NIPELL 68

Query: 204 ELDLRGCGITTSQGL----ADLPNLKTLDLRDCGITTIQGLAKLKNL--EALDLSWNNIN 257
            L+L    +     +       PNLK L+L    + + + L K+K L  E L L  N+++
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 258 GSLESQG------LADLPNLKILDLRD 278
            +   Q           P L  LD  +
Sbjct: 129 DTFRDQSTYISAIRERFPKLLRLDGHE 155

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 193 RLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLA-KLKNLEALDL 251
           +L ++   +  +  L   G+ +   L        L+ R     T++ +   +  L +L+L
Sbjct: 13  KLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNL 72

Query: 252 SWNNING-SLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
           S N +      S  +   PNLKIL+L    + + +    
Sbjct: 73  SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 111

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 5e-06
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 129 LDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITS 188
           LDL     +  +   L    S   +            +    +   +Q +DLS +  I  
Sbjct: 5   LDLTGKNLHPDVTGRL---LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEV 60

Query: 189 GSLTRLGLANLTNLKELDLRGCGITTS--QGLADLPNLKTLDLRDC 232
            +L  + L+  + L+ L L G  ++      LA   NL  L+L  C
Sbjct: 61  STLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 14/210 (6%)

Query: 81  RTSASLLNMSLFHPFE--ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND 138
           R   S ++  L   F    +Q ++LS++       +  +       +L+ L L     +D
Sbjct: 29  RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSD 85

Query: 139 SILPYLNTLTSLTTL-ILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLA 197
            I+  L   ++L  L +   +          L++   L  L+LSW  + T   +      
Sbjct: 86  PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 145

Query: 198 NLTNLKELDLRGCGITTSQGLAD--------LPNLKTLDLRDCGITTIQGLAKLKNLEAL 249
               + +L+L G      +            L +L   D         Q   +L  L+ L
Sbjct: 146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205

Query: 250 DLSWNNINGSLESQGLADLPNLKILDLRDC 279
            LS            L ++P LK L +   
Sbjct: 206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 151 TTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC 210
            TL L   ++           L    V+      +     L      +   ++ +DL   
Sbjct: 3   QTLDLTGKNLHPDV----TGRLLSQGVIAFRCPRSFMDQPL--AEHFSPFRVQHMDLSNS 56

Query: 211 GITTSQG---LADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNN 255
            I  S     L+    L+ L L    ++   +  LAK  NL  L+LS  +
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 189 GSLTRLGLANLTNLKELDLRG--CGITT-SQGLADLPNLKTLDLRDCGITTIQGLAKLKN 245
                      T  ++++L G    I      L+ L   K L L    I  I  L+ ++N
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMEN 71

Query: 246 LEALDLSWNN 255
           L  L L  N 
Sbjct: 72  LRILSLGRNL 81

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 232 CGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279
                            LD+S   I+ SL S GL +L  L+     + 
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 178 LDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGIT 235
            +L+ ++N     L        +    LD+    I +  S GL +L  L+          
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY----- 233

Query: 236 TIQGLAKLKNLE 247
               L KL  LE
Sbjct: 234 ---NLKKLPTLE 242

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 220 DLPNLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
            + +   ++     +T +   L K  +   L LS N +        L     L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDR 64

Query: 279 CGM 281
             +
Sbjct: 65  AEL 67

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 223 NLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNING---SLESQGLADLPNLKILDLRD 278
           +LK   +      ++   L +  +++ + LS N I        S+ +A   +L+I +  D
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 279 CGMTTIQGKIF 289
                ++ +I 
Sbjct: 69  IFTGRVKDEIP 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.82

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3e-37  Score=260.60  Aligned_cols=255  Identities=24%  Similarity=0.336  Sum_probs=206.5

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCC-CCCceEeccc--cCcEEeecccccccccccccc
Q 022897            6 GCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCD-DWEGVKCNAT--TRRVMQLSLTYTERLNYYDRT   82 (290)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~-~w~gv~c~~~--~~~v~~l~l~~~~~l~~l~~~   82 (290)
                      -|.++||+||++||+++.+  |     ..+++|..     ..+||. .|.||+|+..  ..+|+.++|+++.    +  .
T Consensus         2 ~c~~~e~~aLl~~k~~~~~--~-----~~l~sW~~-----~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~----l--~   63 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGN--P-----TTLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN----L--P   63 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC--C-----GGGTTCCT-----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC----C--S
T ss_pred             CCCHHHHHHHHHHHHHCCC--C-----CcCCCCCC-----CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCC----C--C
Confidence            3999999999999999987  4     46899986     678883 4999999863  3489999999976    2  1


Q ss_pred             cccccCCCcCCCCCCCcEEECCC-CcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCC
Q 022897           83 SASLLNMSLFHPFEELQSLNLSD-NWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIE  161 (290)
Q Consensus        83 ~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  161 (290)
                      +...+ +..++++++|++|+|++ |.+.|.+|.    .++++++|++|++++|.+.+..+..+..+..|++++++.|.+.
T Consensus        64 g~~~l-p~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~  138 (313)
T d1ogqa_          64 KPYPI-PSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             SCEEC-CGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCCCC-ChHHhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhccccccccccc
Confidence            11122 45688999999999986 788888777    8899999999999999998888888888999999999999888


Q ss_pred             CCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCc-cEEEcCCCCCC-------------------------CC
Q 022897          162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL-KELDLRGCGIT-------------------------TS  215 (290)
Q Consensus       162 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~-------------------------~~  215 (290)
                      +..+ ..+..++.++++++++|.+  .+.+|. .+..+..+ +.+.+++|+++                         .+
T Consensus       139 ~~~p-~~l~~l~~L~~l~l~~n~l--~~~ip~-~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~  214 (313)
T d1ogqa_         139 GTLP-PSISSLPNLVGITFDGNRI--SGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             SCCC-GGGGGCTTCCEEECCSSCC--EEECCG-GGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCG
T ss_pred             ccCc-hhhccCcccceeecccccc--cccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7655 4788999999999999987  666666 55555554 66777666543                         23


Q ss_pred             cCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897          216 QGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       216 ~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~  288 (290)
                      ..+..+++++.+++++|.+++ ++.+..+++|+.|++++|+++|.+|.. ++++++|++|+|++|+|+|.+|+.
T Consensus       215 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~-l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccccccccccccccccccccccccccccccccccccCccCeecccCChH-HhCCCCCCEEECcCCcccccCCCc
Confidence            445567788999999998887 677888889999999999999888887 888999999999999999888863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-22  Score=166.66  Aligned_cols=195  Identities=25%  Similarity=0.221  Sum_probs=161.5

Q ss_pred             ccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECC-CCcCCCCchhhccCCCCCCEEEccCCCC
Q 022897           82 TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLG-CNFFNDSILPYLNTLTSLTTLILYSNSI  160 (290)
Q Consensus        82 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~~n~~  160 (290)
                      ..+..+++..|..+++|++|++++|.+....+.    .+..+..++.+.+. .+.++...+..+.++++|++|++++|.+
T Consensus        42 N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~----~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~  117 (284)
T d1ozna_          42 NRISHVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL  117 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CcCCCCCHHHhhccccccccccccccccccccc----cccccccccccccccccccccccchhhcccccCCEEecCCccc
Confidence            345566667788899999999999998887665    67778888888775 5556666677888999999999999998


Q ss_pred             CCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--
Q 022897          161 EGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--  236 (290)
Q Consensus       161 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--  236 (290)
                      ... ....+....+|+.+++.+|.+   ..++...+..+++|++|++++|.++  .+.++..+++|+++++++|.+++  
T Consensus       118 ~~~-~~~~~~~~~~L~~l~l~~N~l---~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         118 QEL-GPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             CCC-CTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccc-cccccchhcccchhhhccccc---cccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            754 334677888999999999996   3455557888899999999999998  56778899999999999999998  


Q ss_pred             ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          237 IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       237 ~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      +..+..+++|++|++++|.+.+ ++...+..+++|++|+|++|++...-
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hhHhhhhhhccccccccccccc-ccccccccccccCEEEecCCCCCCCc
Confidence            6778999999999999999995 54444899999999999999987653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=7.8e-22  Score=164.75  Aligned_cols=220  Identities=22%  Similarity=0.286  Sum_probs=123.4

Q ss_pred             CCCCCC-CCCCCceEecccc---------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccc
Q 022897           44 GMPSDC-CDDWEGVKCNATT---------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYE  113 (290)
Q Consensus        44 ~~~~~~-c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  113 (290)
                      .|+-.| | .|.+|.|.+..         ..++.++++++         .+..++...|.++++|++|++++|.+....+
T Consensus         3 ~~p~~c~c-~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N---------~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~   72 (305)
T d1xkua_           3 VCPFRCQC-HLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---------KITEIKDGDFKNLKNLHTLILINNKISKISP   72 (305)
T ss_dssp             CCCTTCEE-ETTEEECTTSCCCSCCCSCCTTCCEEECCSS---------CCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred             CCCCCCEe-cCCEEEecCCCCCccCCCCCCCCCEEECcCC---------cCCCcChhHhhccccccccccccccccccch
Confidence            377777 6 99999997522         22344444444         3556666678889999999999999988777


Q ss_pred             hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCc-------------------------chhh
Q 022897          114 NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSG-------------------------TMQG  168 (290)
Q Consensus       114 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-------------------------~~~~  168 (290)
                      .    .|..++.|++|++++|.++. +|..  ..+.++.|++..|.+....                         ....
T Consensus        73 ~----~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~  145 (305)
T d1xkua_          73 G----AFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA  145 (305)
T ss_dssp             T----TTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred             h----hhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccc
Confidence            6    78899999999999988763 3322  1234555555555443210                         0113


Q ss_pred             cccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCC
Q 022897          169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLK  244 (290)
Q Consensus       169 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~  244 (290)
                      +..+++|+.+++.+|.+.   .++.   ..+++|++|++++|...  .+..+..++.++.|++++|.+++  +..+..++
T Consensus       146 ~~~l~~L~~l~l~~n~l~---~l~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~  219 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNIT---TIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP  219 (305)
T ss_dssp             GGGCTTCCEEECCSSCCC---SCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             cccccccCccccccCCcc---ccCc---ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc
Confidence            344555666666666531   2221   12344455555554444  33344444455555555555444  33344445


Q ss_pred             CCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897          245 NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI  288 (290)
Q Consensus       245 ~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~  288 (290)
                      +|++|+|++|.++ .+|.. +..+++|++|+|++|+|+.+...+
T Consensus       220 ~L~~L~L~~N~L~-~lp~~-l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         220 HLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             TCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             cceeeeccccccc-ccccc-cccccCCCEEECCCCccCccChhh
Confidence            5555555555554 34443 444555555555555555444333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.4e-22  Score=162.58  Aligned_cols=174  Identities=26%  Similarity=0.248  Sum_probs=150.1

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      +++++|+|++|.+++..+.    .|..+++|++|+|++|.++. ++ .++.+++|++|++++|.++..  +..+..+++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSL--PLLGQTLPAL  102 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSC--CCCTTTCTTC
T ss_pred             cCCCEEECcCCcCCCcCHH----Hhhccccccccccccccccc-cc-ccccccccccccccccccccc--cccccccccc
Confidence            5799999999999987766    78999999999999999974 43 457899999999999999864  3368889999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDL  251 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l  251 (290)
                      ++|++++|.+   ..++...+..+.++++|++++|.+.  .+..+..+++++.+++++|++++  +..+..+++|++|+|
T Consensus       103 ~~L~l~~~~~---~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         103 TVLDVSFNRL---TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             CEEECCSSCC---CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccc---ceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeec
Confidence            9999999985   3444447788899999999999998  45566788999999999999998  456889999999999


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMT  282 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  282 (290)
                      ++|.++ .+|.. +..+++|+.|+|++|++.
T Consensus       180 s~N~L~-~lp~~-~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         180 QENSLY-TIPKG-FFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSSCCC-CCCTT-TTTTCCCSEEECCSCCBC
T ss_pred             ccCCCc-ccChh-HCCCCCCCEEEecCCCCC
Confidence            999999 89988 667999999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.3e-21  Score=159.33  Aligned_cols=186  Identities=23%  Similarity=0.184  Sum_probs=158.9

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      +.+++|+|++|.++...+.    .|..++.|++|++++|.+....+..+..+..++.+....+.......+..+..+++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcCCcCCCCCHH----HhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            4689999999999887766    789999999999999999887777788889999998875544444556689999999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDL  251 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l  251 (290)
                      ++|++++|.+   ..++...+...++|+.+++++|.++ + +..+..+++|++|++++|.++.  +..+..+++|+.+++
T Consensus       108 ~~L~l~~n~~---~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         108 HTLHLDRCGL---QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             CEEECTTSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEecCCccc---ccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            9999999985   3344446788899999999999998 3 5668889999999999999998  566889999999999


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++|.+++..|.. |..+++|++|++++|++++.++++|
T Consensus       185 ~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~~~~  221 (284)
T d1ozna_         185 HQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEAL  221 (284)
T ss_dssp             CSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             hhccccccChhH-hhhhhhccccccccccccccccccc
Confidence            999999544554 9999999999999999999998766

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=1.9e-22  Score=169.17  Aligned_cols=189  Identities=21%  Similarity=0.291  Sum_probs=157.1

Q ss_pred             CCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhh
Q 022897           89 MSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQG  168 (290)
Q Consensus        89 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (290)
                      |..++++++|++|++++|.+.+..+.    .+..+..|++++++.|.+.+.+|..+..++.|+++++++|.+.+.++. .
T Consensus        94 P~~i~~L~~L~~L~Ls~N~l~~~~~~----~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~-~  168 (313)
T d1ogqa_          94 PPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-S  168 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG-G
T ss_pred             ccccccccccchhhhccccccccccc----cccchhhhcccccccccccccCchhhccCcccceeecccccccccccc-c
Confidence            45688999999999999999988776    678899999999999999889999999999999999999998876553 4


Q ss_pred             cccCCCC-CeeeCCCCCCCC---------------------CCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCc
Q 022897          169 LANLRYL-QVLDLSWNENIT---------------------SGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLK  225 (290)
Q Consensus       169 ~~~l~~L-~~L~l~~n~~~~---------------------~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~  225 (290)
                      +..+..+ +.++++.|.+..                     .+.++. .+..+++++.+++++|.+. .++.+..+++|+
T Consensus       169 ~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~-~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~  247 (313)
T d1ogqa_         169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN  247 (313)
T ss_dssp             GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSEECCBGGGCCCCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            5555544 666666665410                     122232 4567788999999999988 566788899999


Q ss_pred             EEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCC-Ccccc
Q 022897          226 TLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG-MTTIQ  285 (290)
Q Consensus       226 ~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~-l~~~~  285 (290)
                      .|++++|++++  |+.+.++++|++|+|++|+++|.+|.  ++.+++|+.+++++|+ +.|.|
T Consensus       248 ~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSSEEESTT
T ss_pred             cccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCCccccCCC
Confidence            99999999996  78899999999999999999999985  6789999999999997 67763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-20  Score=154.39  Aligned_cols=181  Identities=28%  Similarity=0.236  Sum_probs=151.2

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      +...+.+++.++++++.. |.    .+.  +.+++|+|++|.+++..+..|.++++|++|+|++|.++. ++  .+..++
T Consensus         8 ~~~~~~~v~C~~~~L~~i-P~----~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~--~~~~l~   77 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTAL-PP----DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ--VDGTLP   77 (266)
T ss_dssp             CSTTCCEEECTTSCCSSC-CS----CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE--CCSCCT
T ss_pred             ccCCCeEEEccCCCCCee-Cc----CcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc--cccccc
Confidence            455677789999888864 33    332  579999999999987667789999999999999999974 22  467899


Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEE
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEAL  249 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L  249 (290)
                      +|++|++++|.+  . ..+. .+..+++|++|++++|.+.  .+..+..+.++++|++++|.++.  +..+..++.++.+
T Consensus        78 ~L~~L~Ls~N~l--~-~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          78 VLGTLDLSHNQL--Q-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             TCCEEECCSSCC--S-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccc--c-cccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            999999999996  2 3344 6788999999999999987  55667888999999999999998  4557789999999


Q ss_pred             eCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          250 DLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       250 ~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++++|.++ .++...+..+++|++|+|++|+|+.+++++|
T Consensus       154 ~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~  192 (266)
T d1p9ag_         154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFF  192 (266)
T ss_dssp             ECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccccccc-ccCccccccccccceeecccCCCcccChhHC
Confidence            99999999 4665558999999999999999998777766

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.6e-19  Score=142.34  Aligned_cols=166  Identities=31%  Similarity=0.370  Sum_probs=141.8

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      .+.+|++|+++++.+....      .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++  .+ .+..++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~------~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD--LS-SLKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC--GG-GGTTCT
T ss_pred             HhcCccEEECcCCCCCCch------hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc--cc-cccccc
Confidence            3568999999999987642      467799999999999999863 3 36789999999999999986  32 588899


Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCC
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSW  253 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~  253 (290)
                      +|+.|++.+|..   ..++  .+..++.++.+++++|.++....+..+++|+++++++|++++...+..+++|++|++++
T Consensus       113 ~L~~L~l~~~~~---~~~~--~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         113 KLKSLSLEHNGI---SDIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK  187 (210)
T ss_dssp             TCCEEECTTSCC---CCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             cccccccccccc---cccc--cccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCC
Confidence            999999999985   2343  57889999999999999987667788999999999999999977799999999999999


Q ss_pred             CCCCCcccccccCCCCCCCEEecCC
Q 022897          254 NNINGSLESQGLADLPNLKILDLRD  278 (290)
Q Consensus       254 n~l~~~i~~~~l~~l~~L~~L~L~~  278 (290)
                      |.++ .++.  +..+++|++|+|++
T Consensus       188 N~i~-~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         188 NHIS-DLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCC-BCGG--GTTCTTCSEEEEEE
T ss_pred             CCCC-CChh--hcCCCCCCEEEccC
Confidence            9998 6763  88999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=5.4e-19  Score=138.15  Aligned_cols=162  Identities=30%  Similarity=0.428  Sum_probs=124.1

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR  173 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  173 (290)
                      .+.++++|+++++.+... .     .+..+++|++|++++|.+++..+  +.++++|++|++++|.+... +  .+..++
T Consensus        38 ~l~~l~~L~l~~~~i~~l-~-----~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~--~l~~l~  106 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-D-----GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T--PLANLT  106 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G--GGTTCT
T ss_pred             HhcCCCEEECCCCCCCCc-c-----ccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c--cccccc
Confidence            456788888888887653 1     46678888888888888876432  77888888888888887652 2  477888


Q ss_pred             CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCC
Q 022897          174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSW  253 (290)
Q Consensus       174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~  253 (290)
                      .|+.|+++++..  . .++  .+..+++|+.|++++|.+...+.+..+++|++|++.+|.+++.+.+..+++|++|++++
T Consensus       107 ~L~~L~l~~~~~--~-~~~--~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         107 NLTGLTLFNNQI--T-DID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS  181 (199)
T ss_dssp             TCSEEECCSSCC--C-CCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             cccccccccccc--c-ccc--ccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCC
Confidence            888888888775  2 222  46778888888888888876666788888888888888888877788888888888888


Q ss_pred             CCCCCcccccccCCCCCCCEE
Q 022897          254 NNINGSLESQGLADLPNLKIL  274 (290)
Q Consensus       254 n~l~~~i~~~~l~~l~~L~~L  274 (290)
                      |+++ .++.  ++.+++|++|
T Consensus       182 N~i~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         182 NKVS-DISV--LAKLTNLESL  199 (199)
T ss_dssp             SCCC-CCGG--GGGCTTCSEE
T ss_pred             CCCC-CCcc--ccCCCCCCcC
Confidence            8887 4553  6677887765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.1e-18  Score=139.19  Aligned_cols=167  Identities=33%  Similarity=0.415  Sum_probs=115.8

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      +..+++|++|++++|.+.+..      .+..+++|+++++++|.++. + +.+..+++|++++++++...+.   ..+..
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~------~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~---~~~~~  127 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLA------PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV---TPLAG  127 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG------GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC---GGGTT
T ss_pred             HhcCCCCcEeecCCceeeccc------cccccccccccccccccccc-c-cccccccccccccccccccccc---chhcc
Confidence            566777777777777776542      35677777777777777653 2 3456777777777777766542   23556


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL  251 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l  251 (290)
                      .+.++.+.+..+.+  . ...  .+..+++|++|++++|.+.....+..+++|++|++++|.+++.+.+..+++|++|++
T Consensus       128 ~~~~~~l~~~~~~~--~-~~~--~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~L  202 (227)
T d1h6ua2         128 LSNLQVLYLDLNQI--T-NIS--PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL  202 (227)
T ss_dssp             CTTCCEEECCSSCC--C-CCG--GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             ccchhhhhchhhhh--c-hhh--hhccccccccccccccccccchhhcccccceecccCCCccCCChhhcCCCCCCEEEC
Confidence            66777777776664  2 122  356677788888888777755557777888888888888777666777788888888


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecC
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLR  277 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~  277 (290)
                      ++|+++ .+++  ++.+++|++|+|+
T Consensus       203 s~N~lt-~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         203 KNNQIS-DVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             TTSCCC-BCGG--GTTCTTCCEEEEE
T ss_pred             cCCcCC-CCcc--cccCCCCCEEEee
Confidence            888777 4553  6777888888776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.9e-18  Score=136.74  Aligned_cols=176  Identities=28%  Similarity=0.359  Sum_probs=149.8

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN  171 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (290)
                      ...+.+|++|++.+|.++.. .     .+..+++|++|++++|.+++..+  +..+++|+++++++|.++..   ..+..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-----~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i---~~l~~  105 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI-E-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV---SAIAG  105 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC---GGGTT
T ss_pred             HHHcCCcCEEECCCCCCCcc-h-----hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc---ccccc
Confidence            45577899999999998764 2     57889999999999999986443  78999999999999998752   25788


Q ss_pred             CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897          172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL  251 (290)
Q Consensus       172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l  251 (290)
                      +++|+.++++++..  . .+.  .+...+.++.+.++.+.+.....+..+++|++|++++|.+++...+..+++|+.|++
T Consensus       106 l~~L~~l~l~~~~~--~-~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         106 LQSIKTLDLTSTQI--T-DVT--PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA  180 (227)
T ss_dssp             CTTCCEEECTTSCC--C-CCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             cccccccccccccc--c-ccc--hhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceeccc
Confidence            99999999999885  2 222  467788999999999998866667889999999999999998777999999999999


Q ss_pred             CCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      ++|.++ .++.  +..+++|++|+|++|++++++|
T Consensus       181 s~n~l~-~l~~--l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         181 DDNKIS-DISP--LASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             CSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             CCCccC-CChh--hcCCCCCCEEECcCCcCCCCcc
Confidence            999998 4654  7889999999999999998765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.6e-18  Score=134.22  Aligned_cols=167  Identities=29%  Similarity=0.324  Sum_probs=139.5

Q ss_pred             EEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeee
Q 022897          100 SLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLD  179 (290)
Q Consensus       100 ~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  179 (290)
                      .+.+..+.+++.+.      ...+.++++|+++++.+.. + +.+..+++|++|++++|.+++..   .+..+++|++|+
T Consensus        22 ~~~l~~~~~~~~~~------~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~   90 (199)
T d2omxa2          22 KTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDIL   90 (199)
T ss_dssp             HHHTTCSSTTSEEC------HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEE
T ss_pred             HHHhCCCCCCCccC------HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc---cccCCccccccc
Confidence            34556666665432      2346789999999999875 2 35778999999999999998742   488999999999


Q ss_pred             CCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCc
Q 022897          180 LSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGS  259 (290)
Q Consensus       180 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~  259 (290)
                      +++|.+   ..++  .+..++.|+.|++++|.....+.+..+++|+.|++++|.+..++.+..+++|+.|++.+|.++ .
T Consensus        91 l~~n~~---~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~-~  164 (199)
T d2omxa2          91 MNNNQI---ADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT-D  164 (199)
T ss_dssp             CCSSCC---CCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-C
T ss_pred             cccccc---cccc--ccccccccccccccccccccccccchhhhhHHhhhhhhhhccccccccccccccccccccccc-C
Confidence            999985   3444  478999999999999998866778899999999999999999888999999999999999998 4


Q ss_pred             ccccccCCCCCCCEEecCCCCCcccc
Q 022897          260 LESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       260 i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      ++.  ++++++|++|++++|+++.+.
T Consensus       165 l~~--l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         165 LKP--LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             Ccc--ccCCCCCCEEECCCCCCCCCc
Confidence            554  889999999999999998864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.1e-17  Score=141.46  Aligned_cols=146  Identities=32%  Similarity=0.378  Sum_probs=70.0

Q ss_pred             CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCC
Q 022897          121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT  200 (290)
Q Consensus       121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  200 (290)
                      ..+++|++|++++|.+++..  .+..+++|++|+++++.+++..   .+..++.++.+.+..|.+  . .++  .+..++
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~l~~l~~~~n~l--~-~~~--~~~~~~  307 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQL--E-DIS--PISNLK  307 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCC--S-CCG--GGGGCT
T ss_pred             hcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC---cccccccccccccccccc--c-ccc--ccchhc
Confidence            33444444444444444321  1334444444444444443311   233444444444444443  1 111  244555


Q ss_pred             CccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCC
Q 022897          201 NLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC  279 (290)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n  279 (290)
                      ++++|++++|+++....+..+++|++|++++|.+++++.+..+++|++|++++|++++ +++  +.++++|+.|+|++|
T Consensus       308 ~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~-l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         308 NLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEECCCE
T ss_pred             ccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCC-Chh--hccCCCCCEeeCCCC
Confidence            5555555555555323345555555555555555554455555555555555555552 332  455555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.1e-18  Score=135.67  Aligned_cols=185  Identities=16%  Similarity=0.104  Sum_probs=78.2

Q ss_pred             CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCc-hhhccCCCCCCEEEccCC-CCCCCcchhhcccCCC
Q 022897           97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSI-LPYLNTLTSLTTLILYSN-SIEGSGTMQGLANLRY  174 (290)
Q Consensus        97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~  174 (290)
                      ++++|++++|.++...+.    .|.++++|++|++++|.+...+ +..|..++.++++.+..+ .+.. ..+..+..+++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~~  104 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPN  104 (242)
T ss_dssp             CCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCTT
T ss_pred             CCCEEECcCCcCCccChh----Hhhccchhhhhhhccccccceeeccccccccccccccccccccccc-ccccccccccc
Confidence            455555555555444333    4455555555555555544322 223444555555554432 2222 22234455555


Q ss_pred             CCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCC-CCcEEEccCCCCCC-ccccccCCCCCEE-
Q 022897          175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLP-NLKTLDLRDCGITT-IQGLAKLKNLEAL-  249 (290)
Q Consensus       175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~-~L~~L~l~~n~l~~-~~~l~~~~~L~~L-  249 (290)
                      |+++++.+|.+....  +...+..+..++.+...++.+.  ....+..++ .++.|++++|.++. +.......+++.+ 
T Consensus       105 L~~l~l~~~~l~~~~--~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~  182 (242)
T d1xwdc1         105 LQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN  182 (242)
T ss_dssp             CCEEEEESCCCCSCC--CCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEE
T ss_pred             ccccccchhhhcccc--cccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccc
Confidence            555555555431111  0011222333333334444433  122222222 44455555555544 2222222333333 


Q ss_pred             eCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897          250 DLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF  289 (290)
Q Consensus       250 ~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f  289 (290)
                      ++.+|.++ .+|...|..+++|++|+|++|+|+.+++..|
T Consensus       183 ~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         183 LSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             CTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSC
T ss_pred             cccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHH
Confidence            23444444 3444434445555555555555554444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=4.3e-17  Score=135.55  Aligned_cols=181  Identities=26%  Similarity=0.322  Sum_probs=142.4

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      +++++|++++|+++...+.    .|..+++|++|++++|.+....|..|.+++.|++|++++|+++.. +.   .....+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~----~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~---~~~~~l  102 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PE---KMPKTL  102 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CS---SCCTTC
T ss_pred             CCCCEEECcCCcCCCcChh----HhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC-cc---chhhhh
Confidence            6799999999999888766    789999999999999999987788899999999999999998742 21   122455


Q ss_pred             CeeeCCCCCCCCCC-----------------------ccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccC
Q 022897          176 QVLDLSWNENITSG-----------------------SLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRD  231 (290)
Q Consensus       176 ~~L~l~~n~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~  231 (290)
                      +.|++..|.+....                       ......+..+++|+++++++|.+. .+..  .+++|++|++++
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~  180 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDG  180 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTT
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCC
Confidence            56655555432110                       001124667788999999999887 4433  367999999999


Q ss_pred             CCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897          232 CGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       232 n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      |.++.  +..+..++.+++|++++|.++ .++...+..+++|++|+|++|+|+.+++.
T Consensus       181 n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L~L~~N~L~~lp~~  237 (305)
T d1xkua_         181 NKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGG  237 (305)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred             CcCCCCChhHhhcccccccccccccccc-ccccccccccccceeeecccccccccccc
Confidence            99887  567888999999999999998 55555588999999999999999987553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.1e-17  Score=138.53  Aligned_cols=178  Identities=29%  Similarity=0.364  Sum_probs=152.0

Q ss_pred             CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897           90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL  169 (290)
Q Consensus        90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  169 (290)
                      ..+..+++++.+++++|.+++..+      +...++|++|++++|.++.  ++.+..+++|+.|++++|.+++..   .+
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~------~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~---~~  259 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA---PL  259 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG---GG
T ss_pred             cccccccccceeeccCCccCCCCc------ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC---cc
Confidence            346678899999999999887654      3557899999999999875  346788999999999999998743   47


Q ss_pred             ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEE
Q 022897          170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEAL  249 (290)
Q Consensus       170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L  249 (290)
                      ..+++|++|+++++.+  . .++  .+..++.++.+.+..|.++....+..++++++|++++|.+++...+..+++|++|
T Consensus       260 ~~~~~L~~L~l~~~~l--~-~~~--~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L  334 (384)
T d2omza2         260 SGLTKLTELKLGANQI--S-NIS--PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL  334 (384)
T ss_dssp             TTCTTCSEEECCSSCC--C-CCG--GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEE
T ss_pred             cccccCCEeeccCccc--C-CCC--ccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEE
Confidence            7889999999999986  2 344  4778889999999999998666788899999999999999997678999999999


Q ss_pred             eCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          250 DLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       250 ~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      ++++|.++ .++ . +..+++|++|++++|++++.+|
T Consensus       335 ~L~~n~l~-~l~-~-l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         335 FFANNKVS-DVS-S-LANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             ECCSSCCC-CCG-G-GGGCTTCCEEECCSSCCCBCGG
T ss_pred             ECCCCCCC-CCh-h-HcCCCCCCEEECCCCcCCCChh
Confidence            99999998 466 3 8889999999999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.4e-17  Score=129.72  Aligned_cols=166  Identities=29%  Similarity=0.351  Sum_probs=137.8

Q ss_pred             EECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeC
Q 022897          101 LNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDL  180 (290)
Q Consensus       101 L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  180 (290)
                      ..+..+.+.+.+..      ..+..|++|++++|.+....  .+..+++|++|++++|.+++..   .+..+++|++|++
T Consensus        29 ~~l~~~~~~~~~~~------~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~---~~~~l~~L~~L~l   97 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ------NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK---PLANLKNLGWLFL   97 (210)
T ss_dssp             HHTTCSCTTSEECH------HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEEC
T ss_pred             HHhCcCccCCccCH------HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc---ccccCcccccccc
Confidence            34555555554332      23568999999999987532  3778999999999999998732   4678999999999


Q ss_pred             CCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcc
Q 022897          181 SWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSL  260 (290)
Q Consensus       181 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i  260 (290)
                      ++|.+   ..++  .+..+++|+.|++++|.+.....+..+++++.+++++|.++++..+..+++|+++++++|.++ .+
T Consensus        98 ~~n~i---~~l~--~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~-~i  171 (210)
T d1h6ta2          98 DENKV---KDLS--SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DI  171 (210)
T ss_dssp             CSSCC---CCGG--GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CC
T ss_pred             ccccc---cccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            99986   3455  578899999999999998866778899999999999999999888899999999999999998 45


Q ss_pred             cccccCCCCCCCEEecCCCCCcccc
Q 022897          261 ESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       261 ~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      +.  +..+++|++|+|++|+++.+.
T Consensus       172 ~~--l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         172 VP--LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             cc--ccCCCCCCEEECCCCCCCCCh
Confidence            54  889999999999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=5.1e-17  Score=126.02  Aligned_cols=174  Identities=17%  Similarity=0.130  Sum_probs=129.2

Q ss_pred             CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCC-CchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897           98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND-SILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ  176 (290)
Q Consensus        98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  176 (290)
                      .++++.++++++..+.     .+  .+.+++|+|++|.++. ..+..|..+++|++|++++|.+... ++..+..+++|+
T Consensus        10 ~~~v~Cs~~~L~~iP~-----~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPR-----DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCSSCCS-----CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCC
T ss_pred             CCEEEEeCCCcCccCC-----CC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccc
Confidence            4678999998886543     23  2678999999999976 3456678899999999999998864 445788899999


Q ss_pred             eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCC
Q 022897          177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSW  253 (290)
Q Consensus       177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~  253 (290)
                      +|++++|.+   ..+++..|..+++|++|+|++|.++  .+.++..+++|++|++++|.+.. .....-...++.+.+..
T Consensus        82 ~L~Ls~N~l---~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~  158 (192)
T d1w8aa_          82 ELQLGENKI---KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNG  158 (192)
T ss_dssp             EEECCSCCC---CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSG
T ss_pred             eeeeccccc---cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccC
Confidence            999999985   4566657889999999999999998  56678889999999999998876 21111112245555666


Q ss_pred             CCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897          254 NNINGSLESQGLADLPNLKILDLRDCGMTTIQG  286 (290)
Q Consensus       254 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  286 (290)
                      +.+....|.    .+..++.++|+.|+++-..+
T Consensus       159 ~~~~c~~p~----~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         159 GAARCGAPS----KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             GGCBBCSST----TTTTSBGGGSCTTTCCCCCC
T ss_pred             CCeEeCCCh----hhcCCEeeecCHhhCcCCCC
Confidence            666644454    35567778889888865443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.5e-17  Score=134.10  Aligned_cols=179  Identities=24%  Similarity=0.273  Sum_probs=82.0

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCC-CCCCCcchhhcccCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSN-SIEGSGTMQGLANLRY  174 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~  174 (290)
                      .+|++|+++++.++...   +...+..+++|++|+++++.+++..+..++++++|++|++++| .+++.........+++
T Consensus        46 ~~L~~LdLs~~~i~~~~---l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          46 FRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             BCCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCCEEECCCCccCHHH---HHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            35555666555543321   1113445555666666555555444555555555666666554 2332222222344555


Q ss_pred             CCeeeCCCCCCCCCCccchhhhcc-CCCccEEEcCCCC--CC---CCcCCCCCCCCcEEEccCCC-CCC--ccccccCCC
Q 022897          175 LQVLDLSWNENITSGSLTRLGLAN-LTNLKELDLRGCG--IT---TSQGLADLPNLKTLDLRDCG-ITT--IQGLAKLKN  245 (290)
Q Consensus       175 L~~L~l~~n~~~~~~~~~~~~~~~-~~~L~~L~l~~n~--l~---~~~~~~~l~~L~~L~l~~n~-l~~--~~~l~~~~~  245 (290)
                      |++|+++++.......+.. .+.. .++|+.|+++++.  ++   .......+++|++|++++|. +++  +..+..+++
T Consensus       123 L~~L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccccccccccccccchh-hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            6666655543211111211 1222 2455555555432  22   11122334555555555542 333  444555555


Q ss_pred             CCEEeCCCC-CCCCcccccccCCCCCCCEEecCCC
Q 022897          246 LEALDLSWN-NINGSLESQGLADLPNLKILDLRDC  279 (290)
Q Consensus       246 L~~L~l~~n-~l~~~i~~~~l~~l~~L~~L~L~~n  279 (290)
                      |++|++++| .+++..... ++++++|++|++++|
T Consensus       202 L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            555555553 344333333 445555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9e-17  Score=129.07  Aligned_cols=212  Identities=18%  Similarity=0.204  Sum_probs=152.5

Q ss_pred             CCCCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhc
Q 022897           50 CDDWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSF  120 (290)
Q Consensus        50 c~~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l  120 (290)
                      | ....|.|.....         .++.+++++         ..+..++...|.++++|++|++++|.+...++..   .|
T Consensus         8 C-~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~---------n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f   74 (242)
T d1xwdc1           8 C-SNRVFLCQESKVTEIPSDLPRNAIELRFVL---------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VF   74 (242)
T ss_dssp             E-CSSEEEEESCSCSSCCSCSCSCCSEEEEES---------CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSS---SE
T ss_pred             C-cCCEEEEeCCCCCCcCCCCCCCCCEEECcC---------CcCCccChhHhhccchhhhhhhccccccceeecc---cc
Confidence            5 778899964221         233333333         3355566677899999999999999887654431   67


Q ss_pred             CCCCCCcEEECC-CCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897          121 GSLKQLKILDLG-CNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL  199 (290)
Q Consensus       121 ~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  199 (290)
                      ..++.++++.+. .|.+....+..|..+++|+++++++|.+........+..+..+..+...++.   ...++...+..+
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~---l~~i~~~~~~~~  151 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN---IHTIERNSFVGL  151 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT---CCEECTTSSTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccc---cccccccccccc
Confidence            889999999875 4677766777889999999999999998764333344555666666666655   344554455555


Q ss_pred             C-CccEEEcCCCCCC-CCcCCCCCCCCcEE-EccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEE
Q 022897          200 T-NLKELDLRGCGIT-TSQGLADLPNLKTL-DLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKIL  274 (290)
Q Consensus       200 ~-~L~~L~l~~n~l~-~~~~~~~l~~L~~L-~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L  274 (290)
                      + .++.|++++|+++ ++.......+++++ .+.+|.++.  ...+..+++|++|++++|.++ .+|...+.++++|+.+
T Consensus       152 ~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR  230 (242)
T ss_dssp             BSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESS
T ss_pred             cccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccC
Confidence            4 7889999999998 55555566666655 567788988  334889999999999999998 7877667777777777


Q ss_pred             ecCC
Q 022897          275 DLRD  278 (290)
Q Consensus       275 ~L~~  278 (290)
                      ++.+
T Consensus       231 ~~~~  234 (242)
T d1xwdc1         231 STYN  234 (242)
T ss_dssp             SEES
T ss_pred             cCCC
Confidence            6654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=7.6e-17  Score=125.02  Aligned_cols=155  Identities=20%  Similarity=0.181  Sum_probs=117.5

Q ss_pred             CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897           96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL  175 (290)
Q Consensus        96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  175 (290)
                      +++++|+|++|.++..++..   .|..+++|++|++++|.+....+..+..+++|++|++++|.++. +++..|..+++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccccccccccceeeeccccccc-cCHHHHhCCCcc
Confidence            57999999999998654331   67889999999999999998888899999999999999999985 345578999999


Q ss_pred             CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCC-CCCCcEEEccCCCCCCccccccCCCCCEEeCCCC
Q 022897          176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLAD-LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWN  254 (290)
Q Consensus       176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n  254 (290)
                      ++|+|++|.+   ..+++..|..+++|++|+|++|.+.....+.. ...++.+.+..+.++. .....+..++.++++.|
T Consensus       105 ~~L~L~~N~l---~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c-~~p~~l~~~~l~~L~~n  180 (192)
T d1w8aa_         105 KTLNLYDNQI---SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC-GAPSKVRDVQIKDLPHS  180 (192)
T ss_dssp             CEEECCSSCC---CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB-CSSTTTTTSBGGGSCTT
T ss_pred             cccccCCccc---cccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEe-CCChhhcCCEeeecCHh
Confidence            9999999995   45666678899999999999998872211111 1234555556665553 11133455677788888


Q ss_pred             CCCC
Q 022897          255 NING  258 (290)
Q Consensus       255 ~l~~  258 (290)
                      .+..
T Consensus       181 ~l~C  184 (192)
T d1w8aa_         181 EFKC  184 (192)
T ss_dssp             TCCC
T ss_pred             hCcC
Confidence            8763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=5.8e-15  Score=105.70  Aligned_cols=117  Identities=26%  Similarity=0.312  Sum_probs=82.8

Q ss_pred             CEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEcc
Q 022897          151 TTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLR  230 (290)
Q Consensus       151 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  230 (290)
                      |+|++++|.++..  + .+..+++|++|++++|.+   ..+|. .+..+++|+.|++++|.++..+.+..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~l--~-~l~~l~~L~~L~ls~N~l---~~lp~-~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVL--C-HLEQLLLVTHLDLSHNRL---RALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSC--C-CGGGGTTCCEEECCSSCC---CCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCC--c-ccccCCCCCEEECCCCcc---Ccchh-hhhhhhcccccccccccccccCccccccccCeEECC
Confidence            5688888888742  2 467778888888888885   35665 577788888888888888754567788888888888


Q ss_pred             CCCCCC---ccccccCCCCCEEeCCCCCCCC--cccccccCCCCCCCEE
Q 022897          231 DCGITT---IQGLAKLKNLEALDLSWNNING--SLESQGLADLPNLKIL  274 (290)
Q Consensus       231 ~n~l~~---~~~l~~~~~L~~L~l~~n~l~~--~i~~~~l~~l~~L~~L  274 (290)
                      +|.++.   +..+..+++|+.|++++|++++  .++......+|+|+.|
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            888876   2456777888888888887762  1223334446666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-15  Score=125.38  Aligned_cols=207  Identities=20%  Similarity=0.219  Sum_probs=141.9

Q ss_pred             cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCC-cCCCCc-h
Q 022897           64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN-FFNDSI-L  141 (290)
Q Consensus        64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~-~  141 (290)
                      ++..++++++.    +....+    ...+..+++|++|+++++.++.....    .+..+++|++|+++++ .++... .
T Consensus        47 ~L~~LdLs~~~----i~~~~l----~~l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~~l~  114 (284)
T d2astb2          47 RVQHMDLSNSV----IEVSTL----HGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQ  114 (284)
T ss_dssp             CCCEEECTTCE----ECHHHH----HHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred             CCCEEECCCCc----cCHHHH----HHHHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCccccccccccccccc
Confidence            56777887765    221111    23466789999999999988765554    7788999999999986 455322 2


Q ss_pred             hhccCCCCCCEEEccCCC-CCCCcchhhccc-CCCCCeeeCCCCCC-CCCCccchhhhccCCCccEEEcCCCC-CC--CC
Q 022897          142 PYLNTLTSLTTLILYSNS-IEGSGTMQGLAN-LRYLQVLDLSWNEN-ITSGSLTRLGLANLTNLKELDLRGCG-IT--TS  215 (290)
Q Consensus       142 ~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~-l~~L~~L~l~~n~~-~~~~~~~~~~~~~~~~L~~L~l~~n~-l~--~~  215 (290)
                      ..+..+++|++|++++|. +++......+.. .+.|+.|+++++.. .+...+.. ....+++|++|++++|. ++  ..
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~-l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             hhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccc-cccccccccccccccccCCCchhh
Confidence            234568999999999974 443322223333 47899999987642 11112332 45678999999999975 54  55


Q ss_pred             cCCCCCCCCcEEEccCC-CCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897          216 QGLADLPNLKTLDLRDC-GITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       216 ~~~~~l~~L~~L~l~~n-~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  287 (290)
                      ..+..+++|++|++++| .+++  +..+.++++|+.|+++++ +++..-......+|+   |++..++++...+.
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~  264 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH---LQINCSHFTTIARP  264 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT---SEESCCCSCCTTCS
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc---ccccCccCCCCCCC
Confidence            66778999999999996 5665  567888999999999988 443222221344555   45677888776543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.6e-14  Score=103.32  Aligned_cols=114  Identities=28%  Similarity=0.326  Sum_probs=71.8

Q ss_pred             cEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEE
Q 022897          127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD  206 (290)
Q Consensus       127 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  206 (290)
                      |+|++++|.++. ++ .+..++.|++|++++|.++. ++ ..+..+++|++|++++|.+   ..++  .+..+++|++|+
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~~-lp-~~~~~l~~L~~L~l~~N~i---~~l~--~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLRA-LP-PALAALRCLEVLQASDNAL---ENVD--GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCCC-CC-GGGGGCTTCCEEECCSSCC---CCCG--GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccCc-ch-hhhhhhhcccccccccccc---cccC--ccccccccCeEE
Confidence            467777777763 33 35667777777777777764 23 3566777777777777775   2343  466777777777


Q ss_pred             cCCCCCC-CC--cCCCCCCCCcEEEccCCCCCCcc-----ccccCCCCCEE
Q 022897          207 LRGCGIT-TS--QGLADLPNLKTLDLRDCGITTIQ-----GLAKLKNLEAL  249 (290)
Q Consensus       207 l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~~~-----~l~~~~~L~~L  249 (290)
                      +++|+++ .+  ..+..+++|+.|++++|.++..+     ....+|+|+.|
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7777776 22  34566677777777777766511     13335666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1e-14  Score=109.43  Aligned_cols=122  Identities=23%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             CCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897          122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN  201 (290)
Q Consensus       122 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  201 (290)
                      +...+++|+|++|.++. ++..+..+++|+.|++++|.++..   ..+..+++|++|++++|.+   ..++...+..+++
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l---~~~~~l~~L~~L~ls~N~i---~~l~~~~~~~l~~   88 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI---CRIGEGLDQALPD   88 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC---CEECSCHHHHCTT
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc---CCcccCcchhhhhcccccc---cCCCccccccccc
Confidence            34445555555555442 233333445555555555554421   1344445555555555553   2233222344455


Q ss_pred             ccEEEcCCCCCC-CC--cCCCCCCCCcEEEccCCCCCCcc-----ccccCCCCCEEe
Q 022897          202 LKELDLRGCGIT-TS--QGLADLPNLKTLDLRDCGITTIQ-----GLAKLKNLEALD  250 (290)
Q Consensus       202 L~~L~l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~~~-----~l~~~~~L~~L~  250 (290)
                      |++|++++|.++ .+  ..+..+++|++|++++|.++..+     .+..+++|+.||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            555555555444 11  22334444444444444444311     234445555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.50  E-value=1.3e-12  Score=109.58  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897          222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ  285 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~  285 (290)
                      ++|++|++++|+++..+.  .+++|+.|++++|+++ .+|..    +++|++|+|++|+++.++
T Consensus       284 ~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~-~l~~~----~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPA--LPPRLERLIASFNHLA-EVPEL----PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSCC
T ss_pred             CCCCEEECCCCccCcccc--ccCCCCEEECCCCcCC-ccccc----cCCCCEEECcCCcCCCCC
Confidence            578888998888887432  3578888999999887 67653    468999999999998654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=2.9e-14  Score=120.24  Aligned_cols=191  Identities=25%  Similarity=0.299  Sum_probs=101.8

Q ss_pred             CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-------------hccCCCCCCEEEccCCCC
Q 022897           94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-------------YLNTLTSLTTLILYSNSI  160 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~l~~n~~  160 (290)
                      .+++|++|++++|.+.......+...+...+.|++|++++|.+......             .....+.|+.+.+++|.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            3445555555555554433333333334445555555555543211000             011234555555555554


Q ss_pred             CCCcc---hhhcccCCCCCeeeCCCCCCCCCCc--cchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEc
Q 022897          161 EGSGT---MQGLANLRYLQVLDLSWNENITSGS--LTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDL  229 (290)
Q Consensus       161 ~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l  229 (290)
                      +....   ...+...+.|++|++++|.+...+.  +....+...++|++|++++|.++      +...+..+++|++|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            42211   1123455677777777777522111  11123566677888888887765      2344566777888888


Q ss_pred             cCCCCCC--c----cccc--cCCCCCEEeCCCCCCCCc----ccccccCCCCCCCEEecCCCCCccc
Q 022897          230 RDCGITT--I----QGLA--KLKNLEALDLSWNNINGS----LESQGLADLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       230 ~~n~l~~--~----~~l~--~~~~L~~L~l~~n~l~~~----i~~~~l~~l~~L~~L~L~~n~l~~~  284 (290)
                      ++|.+++  .    ..+.  ..+.|++|++++|.++..    +.......+++|+.|+|++|++...
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            8887776  1    2222  235688888888877632    2222113467788888888887653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.2e-14  Score=105.08  Aligned_cols=125  Identities=26%  Similarity=0.288  Sum_probs=100.5

Q ss_pred             ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcC-CCCC
Q 022897          144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQG-LADL  221 (290)
Q Consensus       144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~l  221 (290)
                      +.+..++++|+|++|.++.. + ..+..+++|+.|++++|.+   ..++  .+..+++|++|++++|.++ .++. +..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~-~~~~~l~~L~~L~Ls~N~i---~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEI---RKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCC---CEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             ccCcCcCcEEECCCCCCCcc-C-ccccccccCCEEECCCCCC---CccC--CcccCcchhhhhcccccccCCCccccccc
Confidence            55778899999999999864 2 3567789999999999996   3453  5788999999999999998 4443 4678


Q ss_pred             CCCcEEEccCCCCCCc---cccccCCCCCEEeCCCCCCCCcccc---cccCCCCCCCEEec
Q 022897          222 PNLKTLDLRDCGITTI---QGLAKLKNLEALDLSWNNINGSLES---QGLADLPNLKILDL  276 (290)
Q Consensus       222 ~~L~~L~l~~n~l~~~---~~l~~~~~L~~L~l~~n~l~~~i~~---~~l~~l~~L~~L~L  276 (290)
                      ++|++|++++|.++..   ..+..+++|++|++++|.++ ..|.   ..+..+|+|++||-
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            9999999999999873   45788999999999999987 4442   23677899998873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=7.7e-14  Score=117.56  Aligned_cols=217  Identities=19%  Similarity=0.178  Sum_probs=152.5

Q ss_pred             cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccc------hhhhhhcCCCCCCcEEECCCCc
Q 022897           62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYE------NKAYDSFGSLKQLKILDLGCNF  135 (290)
Q Consensus        62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~~l~~l~~L~~L~l~~n~  135 (290)
                      ...++.++|+++.    +...++..+. ..+...++|+.++++++.......      ..+.+.+..+++|++|+|++|.
T Consensus        30 ~~~l~~L~Ls~n~----i~~~~~~~l~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          30 DDSVKEIVLSGNT----IGTEAARWLS-ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             CSCCCEEECTTSE----ECHHHHHHHH-HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             CCCCCEEECcCCc----CCHHHHHHHH-HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3457788888876    4333433332 346678899999998876543221      1244567788999999999998


Q ss_pred             CCCCc----hhhccCCCCCCEEEccCCCCCCCcch------------hhcccCCCCCeeeCCCCCCCCCCc--cchhhhc
Q 022897          136 FNDSI----LPYLNTLTSLTTLILYSNSIEGSGTM------------QGLANLRYLQVLDLSWNENITSGS--LTRLGLA  197 (290)
Q Consensus       136 l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~------------~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~  197 (290)
                      +....    ...+..+++|++|++++|.+......            ......+.|+.+.+++|.+...+.  +. ..+.
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~-~~l~  183 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-KTFQ  183 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH-HHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc-chhh
Confidence            87653    33455689999999999987532110            012346789999999988633221  22 2466


Q ss_pred             cCCCccEEEcCCCCCC-------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCccccc-
Q 022897          198 NLTNLKELDLRGCGIT-------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSLESQ-  263 (290)
Q Consensus       198 ~~~~L~~L~l~~n~l~-------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~-  263 (290)
                      ..+.|+.|++++|.+.       ....+..+++|+.|++++|.++.      ...+...++|++|+|++|.+++.-... 
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            7889999999999987       23456778999999999999876      345778899999999999998532221 


Q ss_pred             --ccC--CCCCCCEEecCCCCCccc
Q 022897          264 --GLA--DLPNLKILDLRDCGMTTI  284 (290)
Q Consensus       264 --~l~--~l~~L~~L~L~~n~l~~~  284 (290)
                        .+.  ..+.|++|+|++|+|+..
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             HHHhhhccCCCCCEEECCCCcCChH
Confidence              132  346799999999998753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.7e-14  Score=123.38  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             CCCCCCCcEEECCCCcccCccchhhhhhcC-CCCCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCC
Q 022897           92 FHPFEELQSLNLSDNWFRGFYENKAYDSFG-SLKQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIE  161 (290)
Q Consensus        92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~  161 (290)
                      +..+++|++|+|++|.++......+.+.+. ....|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus        51 L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            456778888888888775433223333443 235788888888887643    3445667888888888887653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=8.4e-15  Score=113.69  Aligned_cols=108  Identities=31%  Similarity=0.293  Sum_probs=56.1

Q ss_pred             hcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897          119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN  198 (290)
Q Consensus       119 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  198 (290)
                      .+..+++|++|++++|.++. ++ .+..+++|++|++++|.++.. + .....+++|++|++++|.+   ..++  .+..
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~-~~~~~~~~L~~L~l~~N~i---~~l~--~~~~  113 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-E-NLDAVADTLEELWISYNQI---ASLS--GIEK  113 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-S-SHHHHHHHCCEEECSEEEC---CCHH--HHHH
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-c-ccccccccccccccccccc---cccc--cccc
Confidence            45556666666666666653 22 355566666666666665432 1 1222334566666666653   1232  3455


Q ss_pred             CCCccEEEcCCCCCC-CC--cCCCCCCCCcEEEccCCCCC
Q 022897          199 LTNLKELDLRGCGIT-TS--QGLADLPNLKTLDLRDCGIT  235 (290)
Q Consensus       199 ~~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~  235 (290)
                      +++|++|++++|.++ .+  ..+..+++|++|++++|.+.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            555666666665554 11  23455555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=1.5e-14  Score=112.16  Aligned_cols=146  Identities=28%  Similarity=0.299  Sum_probs=111.2

Q ss_pred             CCCCcEEECCCCcC-CCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897          123 LKQLKILDLGCNFF-NDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN  201 (290)
Q Consensus       123 l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  201 (290)
                      ...++.+++.+..- ...++..+..+++|++|++++|.++.. .  .+..+++|++|++++|.+.   .++. ....+++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i-~--~l~~l~~L~~L~Ls~N~i~---~i~~-~~~~~~~   94 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S--SLSGMENLRILSLGRNLIK---KIEN-LDAVADT   94 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC-C--CHHHHTTCCEEECCEEEEC---SCSS-HHHHHHH
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc-c--cccCCccccChhhcccccc---cccc-ccccccc
Confidence            34566677765421 235667888999999999999999753 2  5788899999999999863   4443 3445568


Q ss_pred             ccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCc---cccccCCCCCEEeCCCCCCCCccccc---------ccCCCC
Q 022897          202 LKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTI---QGLAKLKNLEALDLSWNNINGSLESQ---------GLADLP  269 (290)
Q Consensus       202 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~~~~L~~L~l~~n~l~~~i~~~---------~l~~l~  269 (290)
                      |++|++++|.++..+.+..+++|+.|++++|.++..   ..+..+++|+.|++++|++....+..         .+..+|
T Consensus        95 L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp  174 (198)
T d1m9la_          95 LEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP  174 (198)
T ss_dssp             CCEEECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCS
T ss_pred             ccccccccccccccccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCC
Confidence            999999999998555577888999999999999983   46888999999999999886322211         145689


Q ss_pred             CCCEEe
Q 022897          270 NLKILD  275 (290)
Q Consensus       270 ~L~~L~  275 (290)
                      +|+.||
T Consensus       175 ~L~~LD  180 (198)
T d1m9la_         175 NLKKLD  180 (198)
T ss_dssp             SCCEES
T ss_pred             CcCEeC
Confidence            999886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.4e-11  Score=90.04  Aligned_cols=104  Identities=16%  Similarity=0.042  Sum_probs=54.8

Q ss_pred             cEEECCCCcCCCCchhhccCCCCCCEEEccCCC-CCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEE
Q 022897          127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNS-IEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKEL  205 (290)
Q Consensus       127 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  205 (290)
                      +.++.+++.+. ..|..+..+++|++|+++++. ++ .+++..|..+++|+.|++++|.+   ..+++..|..+++|++|
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l---~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGL---RFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCC---CEECTTGGGSCSCCCEE
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeecccc---CCcccccccccccccce
Confidence            34455444443 234444555556666665443 33 23334555566666666666653   33443355666666666


Q ss_pred             EcCCCCCC-CCcCCCCCCCCcEEEccCCCCC
Q 022897          206 DLRGCGIT-TSQGLADLPNLKTLDLRDCGIT  235 (290)
Q Consensus       206 ~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~  235 (290)
                      +|++|+++ ++.......+|++|++++|.+.
T Consensus        86 ~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eccCCCCcccChhhhccccccccccCCCccc
Confidence            66666665 3333333345666666666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.23  E-value=5.2e-10  Score=93.33  Aligned_cols=180  Identities=22%  Similarity=0.212  Sum_probs=116.5

Q ss_pred             cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh
Q 022897           64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY  143 (290)
Q Consensus        64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  143 (290)
                      +++.++++++.         +..++ +   ..++|++|++++|+++.. |.    .   ..+|++|++++|.++. ++. 
T Consensus        39 ~l~~LdLs~~~---------L~~lp-~---~~~~L~~L~Ls~N~l~~l-p~----~---~~~L~~L~l~~n~l~~-l~~-   95 (353)
T d1jl5a_          39 QAHELELNNLG---------LSSLP-E---LPPHLESLVASCNSLTEL-PE----L---PQSLKSLLVDNNNLKA-LSD-   95 (353)
T ss_dssp             TCSEEECTTSC---------CSCCC-S---CCTTCSEEECCSSCCSSC-CC----C---CTTCCEEECCSSCCSC-CCS-
T ss_pred             CCCEEEeCCCC---------CCCCC-C---CCCCCCEEECCCCCCccc-cc----c---hhhhhhhhhhhcccch-hhh-
Confidence            46677777765         22222 2   246899999999998754 32    2   4678999999988763 222 


Q ss_pred             ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCC
Q 022897          144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPN  223 (290)
Q Consensus       144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~  223 (290)
                      +  .+.|++|++++|.+... +  .+..+++|++|++.++.+.   ..+    .....+..+.+..+.......+..++.
T Consensus        96 l--p~~L~~L~L~~n~l~~l-p--~~~~l~~L~~L~l~~~~~~---~~~----~~~~~l~~l~~~~~~~~~~~~l~~l~~  163 (353)
T d1jl5a_          96 L--PPLLEYLGVSNNQLEKL-P--ELQNSSFLKIIDVDNNSLK---KLP----DLPPSLEFIAAGNNQLEELPELQNLPF  163 (353)
T ss_dssp             C--CTTCCEEECCSSCCSSC-C--CCTTCTTCCEEECCSSCCS---CCC----CCCTTCCEEECCSSCCSSCCCCTTCTT
T ss_pred             h--ccccccccccccccccc-c--chhhhccceeecccccccc---ccc----cccccccchhhcccccccccccccccc
Confidence            1  24699999999988752 3  3567889999999888752   222    223567778887777666666778888


Q ss_pred             CcEEEccCCCCCCc--------------------cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897          224 LKTLDLRDCGITTI--------------------QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT  283 (290)
Q Consensus       224 L~~L~l~~n~l~~~--------------------~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~  283 (290)
                      ++.+.++.|.+...                    +.+..++.|+.+++++|... .++.    ...++..+.+..+.+..
T Consensus       164 l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~  238 (353)
T d1jl5a_         164 LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD  238 (353)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC
T ss_pred             ceeccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc----ccccccccccccccccc
Confidence            88888888876551                    22334556677777666554 3332    23445555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.5e-11  Score=89.99  Aligned_cols=108  Identities=19%  Similarity=0.168  Sum_probs=80.1

Q ss_pred             CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCC
Q 022897          146 TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPN  223 (290)
Q Consensus       146 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~  223 (290)
                      .+...+.++++++.+...  +..+..+++|++|++.+|..  ...++...|..+++|+.|+|++|+++  .+.++..+++
T Consensus         6 ~c~~~~~l~c~~~~~~~~--p~~l~~l~~l~~L~l~~n~~--l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDS--LHHLPGAENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CCSSSSCEECCSSCCCTT--TTTSCSCSCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             CcCCCCeEEecCCCCccC--cccccCccccCeeecCCCcc--ccccCchhhccccccCcceeeccccCCccccccccccc
Confidence            344566788887777642  34677788889999876653  44566657888888999999999888  4666788888


Q ss_pred             CcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCC
Q 022897          224 LKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNIN  257 (290)
Q Consensus       224 L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~  257 (290)
                      |++|+|++|+++. +.......+|+.|+|++|.+.
T Consensus        82 L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            8899999888888 333334446888888888875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.1e-11  Score=103.71  Aligned_cols=194  Identities=21%  Similarity=0.081  Sum_probs=128.5

Q ss_pred             CCCCCcEEECCCCcccCccch-hhhhhcCCCCCCcEEECCCCcCCCCc----hhhccCCCCCCEEEccCCCCCCCcchh-
Q 022897           94 PFEELQSLNLSDNWFRGFYEN-KAYDSFGSLKQLKILDLGCNFFNDSI----LPYLNTLTSLTTLILYSNSIEGSGTMQ-  167 (290)
Q Consensus        94 ~~~~L~~L~l~~n~l~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~-  167 (290)
                      ..+.++.+++.+|.+...... ...........++.+++++|.+....    ...+...+.++.+++++|.++...... 
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            456777888887765433211 12223456778999999888775422    233456788999999998876432211 


Q ss_pred             --h-cccCCCCCeeeCCCCCCCCCCccc-hhhhccCCCccEEEcCCCCCC------CCcCCC-CCCCCcEEEccCCCCCC
Q 022897          168 --G-LANLRYLQVLDLSWNENITSGSLT-RLGLANLTNLKELDLRGCGIT------TSQGLA-DLPNLKTLDLRDCGITT  236 (290)
Q Consensus       168 --~-~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~------~~~~~~-~l~~L~~L~l~~n~l~~  236 (290)
                        . ......|+.+++.++.+...+... ...+...++|++|+|++|.++      +...+. ..+.|++|++++|.+++
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence              1 223467999999998863221110 113456678999999999986      233333 46679999999999987


Q ss_pred             ------ccccccCCCCCEEeCCCCCCCCcccccc---cC-CCCCCCEEecCCCCCcccccc
Q 022897          237 ------IQGLAKLKNLEALDLSWNNINGSLESQG---LA-DLPNLKILDLRDCGMTTIQGK  287 (290)
Q Consensus       237 ------~~~l~~~~~L~~L~l~~n~l~~~i~~~~---l~-~l~~L~~L~L~~n~l~~~~~~  287 (290)
                            ...+...++|++|+|++|.+++.....+   +. ....|+.|++.+|.+.....+
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~  444 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  444 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHH
Confidence                  2346678999999999999985433221   22 345799999999998865443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.42  E-value=2.5e-07  Score=68.65  Aligned_cols=118  Identities=11%  Similarity=0.116  Sum_probs=78.5

Q ss_pred             CCCCCCcEEECCCC-cccCccchhhhhhcCCCCCCcEEECCCCcCCC----CchhhccCCCCCCEEEccCCCCCCCcc--
Q 022897           93 HPFEELQSLNLSDN-WFRGFYENKAYDSFGSLKQLKILDLGCNFFND----SILPYLNTLTSLTTLILYSNSIEGSGT--  165 (290)
Q Consensus        93 ~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~--  165 (290)
                      .+.+.|++|+|+++ .++...-..+...+...+.|++|+|++|.+..    .+...+...+.|++|++++|.++....  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578999999874 46544444556677888889999999888764    233445567889999999988875432  


Q ss_pred             -hhhcccCCCCCeeeCCCCCCCCCCc-----cchhhhccCCCccEEEcCCCC
Q 022897          166 -MQGLANLRYLQVLDLSWNENITSGS-----LTRLGLANLTNLKELDLRGCG  211 (290)
Q Consensus       166 -~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~  211 (290)
                       ...+...+.|++|++.+|.....+.     +. ..+...++|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~-~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH-HHHHhCCCccEeeCcCCC
Confidence             2345666788888888876432321     11 245556777777776553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1e-08  Score=76.05  Aligned_cols=79  Identities=28%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             ccCCCccEEEcCCCCCCC----CcCCCCCCCCcEEEccCCCCCCcccc--ccCCCCCEEeCCCCCCCCcccc------cc
Q 022897          197 ANLTNLKELDLRGCGITT----SQGLADLPNLKTLDLRDCGITTIQGL--AKLKNLEALDLSWNNINGSLES------QG  264 (290)
Q Consensus       197 ~~~~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~l~~n~l~~~~~l--~~~~~L~~L~l~~n~l~~~i~~------~~  264 (290)
                      ..+++|++|++++|+++.    +..+..+++|+.|++++|.+++.+.+  .....|+.|++++|++......      ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            345555555555555541    12233455666666666666653221  1233566666777766533221      12


Q ss_pred             cCCCCCCCEEe
Q 022897          265 LADLPNLKILD  275 (290)
Q Consensus       265 l~~l~~L~~L~  275 (290)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45566676664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.1e-08  Score=72.13  Aligned_cols=9  Identities=33%  Similarity=0.527  Sum_probs=4.1

Q ss_pred             cCCCCCEEe
Q 022897          242 KLKNLEALD  250 (290)
Q Consensus       242 ~~~~L~~L~  250 (290)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            344444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.25  E-value=3.3e-07  Score=67.98  Aligned_cols=108  Identities=10%  Similarity=0.103  Sum_probs=56.6

Q ss_pred             CCCCCCEEEccCC-CCCCCcc---hhhcccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------
Q 022897          146 TLTSLTTLILYSN-SIEGSGT---MQGLANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------  213 (290)
Q Consensus       146 ~l~~L~~L~l~~n-~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------  213 (290)
                      +.++|++|+|+++ .++....   ...+...+.|++|++++|.+.+.+  .+. ..+...+.|++|+|++|.++      
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la-~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI-ELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH-HHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHh-hhhhhcccccceeeehhhcchHHHHH
Confidence            4567777777764 3443211   223455566777777777652211  111 13445566666666666665      


Q ss_pred             CCcCCCCCCCCcEEEccCCCCCC---------ccccccCCCCCEEeCCCC
Q 022897          214 TSQGLADLPNLKTLDLRDCGITT---------IQGLAKLKNLEALDLSWN  254 (290)
Q Consensus       214 ~~~~~~~l~~L~~L~l~~n~l~~---------~~~l~~~~~L~~L~l~~n  254 (290)
                      +..++...++|++|++++|.+..         ...+...++|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            23345555566666666554332         122334455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.10  E-value=1.3e-06  Score=64.50  Aligned_cols=118  Identities=18%  Similarity=0.118  Sum_probs=74.0

Q ss_pred             CCCCCCcEEECCC-CcccCccchhhhhhcCCCCCCcEEECCCCcCCCCc----hhhccCCCCCCEEEccCCCCCCCcc--
Q 022897           93 HPFEELQSLNLSD-NWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSI----LPYLNTLTSLTTLILYSNSIEGSGT--  165 (290)
Q Consensus        93 ~~~~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~--  165 (290)
                      .+.+.|++|++++ +.++...-..+...+...+.|++|++++|.++...    ...+...+.++.+++++|.++....  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3557888888887 45655544456667778888888888888776532    2344557788888888888764332  


Q ss_pred             -hhhcccCCCCCeeeCC--CCCCCCCC--ccchhhhccCCCccEEEcCCCC
Q 022897          166 -MQGLANLRYLQVLDLS--WNENITSG--SLTRLGLANLTNLKELDLRGCG  211 (290)
Q Consensus       166 -~~~~~~l~~L~~L~l~--~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~  211 (290)
                       ...+...++|+.++|.  .|.+.+.+  .+.. .+...++|++|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCC
Confidence             2345566777765554  44431111  1222 45566777777776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.82  E-value=3.9e-06  Score=61.84  Aligned_cols=41  Identities=12%  Similarity=0.024  Sum_probs=20.1

Q ss_pred             CCCCCCcEEECCC-CcCCCC----chhhccCCCCCCEEEccCCCCC
Q 022897          121 GSLKQLKILDLGC-NFFNDS----ILPYLNTLTSLTTLILYSNSIE  161 (290)
Q Consensus       121 ~~l~~L~~L~l~~-n~l~~~----~~~~l~~l~~L~~L~l~~n~~~  161 (290)
                      ...+.|++|++++ +.++..    +...+..++.|++|++++|.++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            4456666666654 234321    2223334555555555555554