Citrus Sinensis ID: 022917

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKYGSDHSFLLVDSMSVYSNHVILGFDPLLEY
Secondary Structure (PSIPRED)
cccccEEEccccccEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccccccEEccccccEEEEEcccccccccccEEEEEEEEEEcccccccEEEEEEEEEcccccEEEEccccccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccEcccccHHHHHcccEEEccccccHccccccHHHHHHccEEEccccccccccccccHHHcEEEEccccccHccccHHHHHHcccEEEcccccHHcccccccccccEEEccccccHcEccccccccHHHHHHHccccccccEcccccHHHccHHHHHHHHHHHHHHHHHHcHHHHHcccccccccEEEEcccccccHHHccccccccEEEEEcccccccccccEEEEEEEEEccccccccEEEEEEEEEcccccccccccccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
MELLQEIDLFLSGIkelpssiehieglkclrlnsctklgflpesLCNLKKLQKLCLSQCRClilsglsslsslkclelsghnfeslptgisQLQRLKCLHLINcnmirslpelpfclnylntsdckrlqslpkisscletpsnqtrgnsylpVMFKFVNCvklhkgternfFANFQRRVHNalpgilhrketdrrRGISIclrgsgiphcwfrtqslgssitiqlprrccnkNFIGFALCAVIEFvadessffhfnvsckygsdhsfLLVDSMSVYsnhvilgfdplley
Flexible Loop (DISEMBL)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPkisscletpsnqtrgnsYLPVMFKFVNCVKLHKGTERNFFANFQRRVHnalpgilhrketdrRRGISICLrgsgiphcWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKYGSDHSFLLVDSMSVYSNHVILGFDPLLEY
Low Complexity Region (SEG)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPEslcnlkklqklclsqcrclilsglsslsslkclelsGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKYGSDHSFLLVDSMSVYSNHVILGFDPLLEY
Disordered region (IsUnstruct)
*****EIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCL********GNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKYGSDHSFLLVDSMSVYSNHVILGFDPL***
Disordered Region (DISOPRED)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKYGSDHSFLLVDSMSVYSNHVILGFDPLLEY
Disordered Region (DISEMBL)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKYGSDHSFLLVDSMSVYSNHVILGFDPLLEY
Disordered Region (DISPRO)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKYGSDHSFLLVDSMSVYSNHVILGFDPLLEY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKYGSDHSFLLVDSMSVYSNHVILGFDPLLEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.624	0.158	0.317	7e-11
Q6DHL5	238	Leucine-rich repeat-conta	yes	no	0.365	0.445	0.385	2e-08
P0CB16	1201	Putative disease resistan	no	no	0.482	0.116	0.354	1e-07
Q9FKZ0	815	Probable disease resistan	no	no	0.403	0.143	0.356	3e-07
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.462	0.130	0.325	8e-07
Q8BGR2	859	Leucine-rich repeat-conta	yes	no	0.493	0.166	0.324	2e-06
Q5FVI3	239	Leucine-rich repeat-conta	yes	no	0.368	0.447	0.414	3e-06
Q5U308	858	Leucine-rich repeat-conta	no	no	0.493	0.166	0.324	4e-06
Q8N9N7	239	Leucine-rich repeat-conta	yes	no	0.368	0.447	0.405	4e-06
Q7SXW3	601	Leucine-rich repeat-conta	no	no	0.393	0.189	0.328	5e-06

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 90/208 (43%), Gaps = 27/208 (12%)

Query: 41   LPESLCNLKKLQKLCLSQCRCLILSGL----SSLSSLKCLELSGHNFESLPTGISQLQRL 96
             P     L  L+ L LS C  LI  GL     SLSSLK L+LS +NFE LP+ I+QL  L
Sbjct: 825  FPPVAEGLHSLEYLNLSYCN-LIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGAL 883

Query: 97   KCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFK 156
            + L L +C  +  LPELP  LN L+  DC    +L  I               YL    K
Sbjct: 884  QSLDLKDCQRLTQLPELPPELNELHV-DCH--MALKFI--------------HYLVTKRK 926

Query: 157  FVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPH---CWFR 213
             ++ VKL        +  F   +   +  + H         +++   G   P     WF 
Sbjct: 927  KLHRVKLDDAHNDTMYNLFAYTMFQNISSMRHDISASDSLSLTV-FTGQPYPEKIPSWFH 985

Query: 214  TQSLGSSITIQLPRRC-CNKNFIGFALC 240
             Q   SS+++ LP        F+GFA+C
Sbjct: 986  HQGWDSSVSVNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +DL  + I+ELP+ I   + LK   + SC KL  LP  +  LKKL+ L L+  +   
Sbjct: 40  LRTVDLSNNKIEELPAFIGSFQHLKSFTI-SCNKLTSLPNDIGKLKKLETLILNGNQLKQ 98

Query: 64  L-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111
           L S +  L SL+ L LSG+ F+  P+G+  L++L  L L + N IR +P
Sbjct: 99  LPSSIGQLKSLRTLSLSGNQFKEFPSGLGTLRQLDVLDL-SKNQIRVVP 146

Danio rerio (taxid: 7955)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           M  L E++L  + + ELP  I  +  LK L +  C+KL  LP +L  L  L+   +S C 
Sbjct: 748 MSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLP-NLEKLTNLEIFDVSGCT 806

Query: 61  CL--ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLN 118
            L  I     +LS L  + LS  N   LP  IS+L  LK L L NC+ +++LP L   L 
Sbjct: 807 ELETIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALPNLE-KLT 865

Query: 119 YLNTSDCKRLQSLPKISSCLETPS 142
           +L   D     +L KI    E+ S
Sbjct: 866 HLVIFDVSGCTNLDKIEESFESMS 889

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 12/129 (9%)

Query: 4   LQEIDL-FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           LQEID+ +   + ELP  I  +  LK L + +C KL  LPE++ NL +L+   L  C C+
Sbjct: 657 LQEIDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRLE--VLRMCSCM 714

Query: 63  ILSGLSS----LSSLKCLELSG-HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
            LS L      LS+L+ L++S       LP  I +LQ+L+ + +  C    S  ELP  +
Sbjct: 715 NLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKC----SGCELPDSV 770

Query: 118 NYLNTSDCK 126
            YL   + K
Sbjct: 771 RYLENLEVK 779

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L  + L  + +++LP+SI ++  LK L L    KLG LP S   L  LQ+L L+  R   
Sbjct: 407 LAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHE 466

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTS 123
           L  +   SSL+ L +       LP     L+ L  L L N  + R LP     L+ L T 
Sbjct: 467 LPSMGGASSLQTLTVDDTALAGLPADFGALRNLAHLSLSNTQL-RELPANTGNLHALKTL 525

Query: 124 DCKRLQSLPKISSCL 138
             +  Q L  + S L
Sbjct: 526 SLQGNQQLATLPSSL 540

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q8BGR2|LRC8D_MOUSE Leucine-rich repeat-containing protein 8D OS=Mus musculus GN=Lrrc8d PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 8/151 (5%)

Query: 4   LQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
           LQE+DL  + I+ +    S +H++ L CL+L    K+  +P S+ ++K L+ L  S  + 
Sbjct: 661 LQELDLKSNNIRTIEEIISFQHLKRLTCLKLWH-NKIVAIPPSITHVKNLESLYFSNNKL 719

Query: 62  LIL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
             L + + SL  L+CL++S +N  ++P  I  LQ L+ LH I  N +  LP+  F    L
Sbjct: 720 ESLPTAVFSLQKLRCLDVSYNNISTIPIEIGLLQNLQHLH-ITGNKVDILPKQLFKCVKL 778

Query: 121 NTSDCKR--LQSLP-KISSCLETPSNQTRGN 148
            T +  +  + SLP KIS   +    + +GN
Sbjct: 779 RTLNLGQNCIASLPEKISQLTQLTQLELKGN 809

Mus musculus (taxid: 10090)

>sp|Q5FVI3|LRC57_RAT Leucine-rich repeat-containing protein 57 OS=Rattus norvegicus GN=Lrrc57 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 4/111 (3%)

Query: 4   LQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           L+ IDL  + I  LP   I     LK L LN+  KL  LP+ LCNLKKL+ L L+     
Sbjct: 40  LRTIDLSNNKIDSLPPLIIGKFTLLKSLSLNN-NKLTVLPDELCNLKKLETLSLNNNHLR 98

Query: 63  IL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE 112
            L S    LS+LK L LSG+   +LP  +  L+ L  + L + N IRS+P+
Sbjct: 99  ELPSSFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDL-SKNQIRSIPD 148

Rattus norvegicus (taxid: 10116)

>sp|Q5U308|LRC8D_RAT Leucine-rich repeat-containing protein 8D OS=Rattus norvegicus GN=Lrrc8d PE=2 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 4   LQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
           LQE+DL  + I+ +    S +H++ L CL+L    K+  +P S+ ++K L+ L  S  + 
Sbjct: 660 LQELDLKSNSIRTIEEIISFQHLKRLTCLKLWH-NKIVAIPPSITHVKNLESLYFSNNKL 718

Query: 62  LILS-GLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
             L   + SL  L+CL++S +N  ++P  I  LQ L+ LH I  N +  LP+  F    L
Sbjct: 719 ESLPVAVFSLQKLRCLDVSYNNISTIPIEIGLLQNLQHLH-ITGNKVDVLPKQLFKCVKL 777

Query: 121 NTSDCKR--LQSLP-KISSCLETPSNQTRGN 148
            T +  +  + SLP KIS   +    + +GN
Sbjct: 778 RTLNLGQNCIASLPEKISQLSQLTQLELKGN 808

Rattus norvegicus (taxid: 10116)

>sp|Q8N9N7|LRC57_HUMAN Leucine-rich repeat-containing protein 57 OS=Homo sapiens GN=LRRC57 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 4   LQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           L+ IDL  + I+ LP   I     LK L LN+  KL  LP+ +CNLKKL+ L L+     
Sbjct: 40  LRTIDLSNNKIESLPPLLIGKFTLLKSLSLNN-NKLTVLPDEICNLKKLETLSLNNNHLR 98

Query: 63  IL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE 112
            L S    LS+LK L LSG+   +LP  +  L+ L  + L + N IRS+P+
Sbjct: 99  ELPSTFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVMDL-SKNQIRSIPD 148

Homo sapiens (taxid: 9606)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 26/140 (18%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLN----------------------SCTKL 38
           +E LQ++ L  + + ELPS +  +  L+CL L                       S   L
Sbjct: 125 LEQLQKLILSHNKLTELPSGVWRLTNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHL 184

Query: 39  GFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRL 96
             +PESL NL+ L KL LS C  L  +   +S + +L+ L+ S +  ES+P  ++Q++ L
Sbjct: 185 IDIPESLANLQNLVKLDLS-CNKLKSLPPAISQMKNLRMLDCSRNQMESIPPVLAQMESL 243

Query: 97  KCLHLINCNMIRSLPELPFC 116
           + L+L   N +R LPELP C
Sbjct: 244 EQLYL-RHNKLRYLPELPCC 262

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
255563202	1158	leucine-rich repeat containing protein,	0.806	0.202	0.358	6e-29
255537139	1137	leucine-rich repeat-containing protein,	0.937	0.239	0.327	6e-28
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.858	0.198	0.348	2e-26
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.858	0.169	0.334	1e-25
147862986	1617	hypothetical protein VITISV_027418 [Viti	0.803	0.144	0.325	2e-25
224103133	397	predicted protein [Populus trichocarpa]	0.872	0.637	0.335	3e-25
255544956	1403	leucine-rich repeat containing protein,	0.8	0.165	0.341	1e-23
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.872	0.176	0.326	3e-23
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.882	0.163	0.330	4e-23
359495285	1557	PREDICTED: TMV resistance protein N-like	0.931	0.173	0.317	1e-21

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 134/248 (54%), Gaps = 14/248 (5%)

Query: 4    LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
            LQ + L  + +  LP +  +++ L  L  + C+KLG LP+++ NLK L +L    C    
Sbjct: 794  LQHLSLDETAMVNLPDTFCNLKALNMLNFSDCSKLGKLPKNMKNLKSLAELRAGGCNLST 853

Query: 64   L-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
            L + L  LSS+  L LSG NF+++P GI+QL +L+ +++  C  ++SLPELP  + YLN 
Sbjct: 854  LPADLKYLSSIVELNLSGSNFDTMPAGINQLSKLRWINVTGCKRLQSLPELPPRIRYLNA 913

Query: 123  SDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNA 182
             DC+ L S+  +    E   +    NS     F F NC KL +    +  A+ Q ++ + 
Sbjct: 914  RDCRSLVSISGLKQLFELGCS----NSLDDETFVFTNCFKLDQDNWADILASAQLKIQHF 969

Query: 183  LPGILHRKETDRR--RGISICLR--GSGIPHCWFRTQSLGSSITIQ-LPRRCCNKNFIGF 237
              G   RK  DR       IC    G+ IP  WF  +S+GSS+TIQ LP    N  F+GF
Sbjct: 970  AMG---RKHYDRELYDETFICFTYPGTEIPE-WFADKSIGSSVTIQHLPPDWLNHRFLGF 1025

Query: 238  ALCAVIEF 245
            ++C V+ F
Sbjct: 1026 SVCLVVAF 1033

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 156/333 (46%), Gaps = 61/333 (18%)

Query: 2    ELLQEID----LFLSG--IKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLC 55
            E+L+ +D    L L+G  IKELPSSIE ++GL  + L +C  L  LPES CNLK L  L 
Sbjct: 715  EILESMDRLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHLPESFCNLKALYWLF 774

Query: 56   LSQCRCL-----ILSGLSSLSSLKC--------------------LELSGHNFESLPTGI 90
            L+ C  L      LS L++L  L                      L+LSG+ F+ LP+  
Sbjct: 775  LTFCPKLEKLPEKLSNLTTLEDLSVGVCNLLKLPSHMNHLSCISKLDLSGNYFDQLPS-F 833

Query: 91   SQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSY 150
              L  L+CL + +C  +RSLPE+P  L  ++  DC+ L+++  +    +     T    +
Sbjct: 834  KYLLNLRCLDISSCRRLRSLPEVPHSLTDIDAHDCRSLETISGLKQIFQLKYTHT----F 889

Query: 151  LPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHC 210
                  F +C K+ +    +F A+ Q  +       +  K+ +     SI   GS IP  
Sbjct: 890  YDKKIIFTSCFKMDESAWSDFLADAQFWIQKV---AMRAKDEE---SFSIWYPGSKIPK- 942

Query: 211  WFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFH--FNVSCKYG-SDHSF 267
            WF  QS GSSI IQL  R    N +GF LC V+ F  DE  + +  F+V C Y   ++  
Sbjct: 943  WFGYQSEGSSIVIQLHPRSHKHNLLGFTLCVVLAF-EDEFEYHNSFFDVLCVYQLKNYRG 1001

Query: 268  LLVDSMSVY--------------SNHVILGFDP 286
               D   VY              S+HVIL +DP
Sbjct: 1002 EYTDCKEVYSSRTHVSGKNKYVGSDHVILFYDP 1034

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 146/304 (48%), Gaps = 55/304 (18%)

Query: 12   SGIKELPSSIEHIEGLKCLRLNSCTKLG--------FLPESLCNLKKLQKLCLSQCRCL- 62
            +GI +LPS + +++GL CL + +C  L          LPE   +LK L+KL L  C C+ 
Sbjct: 874  TGITKLPSPVGNLKGLACLEVGNCKYLKGIECLVDLHLPERDMDLKYLRKLNLDGC-CIS 932

Query: 63   -ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLN 121
             +   L  LSSL+ L+LSG+NFE++P  I +L  L+ L L +C  ++S+P LP  L+ L+
Sbjct: 933  KVPDSLGCLSSLEVLDLSGNNFETMPMNIYKLVELQYLGLRSCRKLKSIPRLPRRLSKLD 992

Query: 122  TSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFA--NFQ--- 176
              DC   QSL K+SS     S    GN +    F F NC++L    +   ++   FQ   
Sbjct: 993  AHDC---QSLIKVSS-----SYVVEGNIF---EFIFTNCLRLPVINQILLYSLLKFQLYT 1041

Query: 177  RRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIG 236
             R+H    G             S CL G   P  WF  QS GS++T  L     N  F+G
Sbjct: 1042 ERLHQVPAGT-----------SSFCLPGDVTPE-WFSHQSWGSTVTFHLSSHWANSEFLG 1089

Query: 237  FALCAVIEFVADESSFFH-FNVSCKY------GSDHSFL-----LVDSMSVYSNHVILGF 284
            F+L AVI F     SF H   V C Y      G  H          D   + S H+ +GF
Sbjct: 1090 FSLGAVIAF----RSFGHSLQVKCTYHFRNKHGDSHDLYCYLHGWYDERRMDSEHIFIGF 1145

Query: 285  DPLL 288
            DP L
Sbjct: 1146 DPCL 1149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 143/305 (46%), Gaps = 56/305 (18%)

Query: 14   IKELPSSIEHIEGLKCLRLNSCTKLGF--------LPESLCNLKKLQKLCLSQCRCLIL- 64
            I +LPS I +++GL CL + +C  L          L E   +L  L+KL L  C   ++ 
Sbjct: 912  ITKLPSPIGNLKGLACLEVGNCKYLNDIECFVDLQLSERWVDLDYLRKLNLDGCHISVVP 971

Query: 65   SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD 124
              L  LSSL+ L+LSG+NF ++P  I++L  L+ L L NC  + SLPELP  L+ L+  +
Sbjct: 972  DSLGCLSSLEVLDLSGNNFSTIPLSINKLSELQYLGLRNCKRLESLPELPPRLSKLDADN 1031

Query: 125  CKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALP 184
            C+ L  L   SS +       +GN +    F F NC+ L              R++  LP
Sbjct: 1032 CESLNYLGSSSSTV------VKGNIF---EFIFTNCLSLC-------------RINQILP 1069

Query: 185  GILH--RKETDRRRGISICLRGS-------GIPHCWFRTQSLGSSITIQLPRRCCNKNFI 235
              L   R  T R   ++  L G+       G+   W   QS GS++T QL     N  F+
Sbjct: 1070 YALKKFRLYTKRLHQLTDVLEGACSFFLPGGVSPQWLSHQSWGSTVTCQLSSHWANSKFL 1129

Query: 236  GFALCAVIEFVADESSFFH-FNVSCKY------GSDHSFL-----LVDSMSVYSNHVILG 283
            GF+LCAVI F     SF H   V C Y      G  H          D   + S H+++G
Sbjct: 1130 GFSLCAVIAF----HSFGHSLQVKCTYHFSNEHGDSHDLYCYLHGWYDEKRIDSEHILVG 1185

Query: 284  FDPLL 288
            FDP L
Sbjct: 1186 FDPCL 1190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862986|emb|CAN78790.1| hypothetical protein VITISV_027418 [Vitis vinifera]

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 137/295 (46%), Gaps = 62/295 (21%)

Query: 1    MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
            ME LQ++ L    IKELP SI H++GL+ L L  C  L  LP S+C+L+ L+ L +S C 
Sbjct: 1306 MECLQKLLLDGISIKELPPSIVHLKGLQSLSLRKCKNLKSLPNSICSLRSLETLIVSGCS 1365

Query: 61   ---------------------CLILSGLSSLSSLKCLELSG------------------- 80
                                  L L  LS L SLK L+LSG                   
Sbjct: 1366 KLSKLPEELGRLLHRENSDGIGLQLPYLSGLYSLKYLDLSGCNLTDRSINDNLGHLRFLE 1425

Query: 81   ------HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKI 134
                  +N  ++P  +++L  L+ L +  C  +R + +LP  +  L+  DC  L+SL  +
Sbjct: 1426 ELNLSRNNLVTIPEEVNRLSHLRVLSVNQCKRLREISKLPPSIKLLDAGDCISLESLSVL 1485

Query: 135  SSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDR 194
            S   ++P   +  +   PV FK  NC  L    + N     ++   N LP I +      
Sbjct: 1486 SP--QSPQYLSSSSRLHPVTFKLTNCFAL---AQDNVATILEKLHQNFLPEIEY------ 1534

Query: 195  RRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADE 249
                SI L GS IP  WF+  S+GSS+TI+LPR   N+ F+GFA C V+    DE
Sbjct: 1535 ----SIVLPGSTIPE-WFQHPSIGSSVTIELPRNWHNEEFLGFAXCCVLSLEEDE 1584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103133|ref|XP_002334087.1| predicted protein [Populus trichocarpa] gi|222869543|gb|EEF06674.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 146/301 (48%), Gaps = 48/301 (15%)

Query: 14  IKELPSSIEHIEGLKCLRLNSCTKLGF--------LPESLCNLKKLQKLCLSQCRCLILS 65
           I ELPS I +++GL CL + +C  L          LP+   +L  L+KL L  C    + 
Sbjct: 14  ITELPSPIGNLKGLACLEVRNCKYLKDIECFVDLQLPKRCVDLDCLRKLNLDGCSLSKVP 73

Query: 66  G-LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD 124
           G L  LSSL+ L+LSG+N  ++P  +++L  L+ L L NC  + SLPELP  L+ L+  D
Sbjct: 74  GSLGRLSSLEVLDLSGNNLRTIPISMNKLFELQYLGLRNCRRLESLPELPPRLSKLDAHD 133

Query: 125 CKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFA--NFQ---RRV 179
           C++L+++   S+ +E       GN +    F F  C +L +  +   ++   FQ   +R+
Sbjct: 134 CQKLRTVSSSSTGVE-------GNIF---EFIFTRCSRLRETNQMLAYSLLKFQLYTKRL 183

Query: 180 HNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFAL 239
            + LP +            + CL G   P  WF  QS GS++T QL     N  F+GF L
Sbjct: 184 CHQLPDV-------PEGACTFCLPGDVTPE-WFSHQSWGSTVTFQLSSYWANNEFLGFCL 235

Query: 240 CAVIEFVADESSFFH-FNVSCKY------GSDHSFL-----LVDSMSVYSNHVILGFDPL 287
           CAVI F     SF H   V C Y      G  H          D   + S H+ +GFDP 
Sbjct: 236 CAVIAF----RSFRHGLQVKCTYHFSNEHGDSHDLYCYLHGWYDEKCIESEHIFVGFDPC 291

Query: 288 L 288
           L
Sbjct: 292 L 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 11/243 (4%)

Query: 9    LFLSGIKEL---PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS 65
            L+L G++ L   PSSI  ++ L+ + LN CTKL  LP SL     L+ L LS    + + 
Sbjct: 969  LYLCGLRRLRSIPSSIRELKRLQDVYLNHCTKLSKLP-SLSGCSSLRDLVLSYSGIVKVP 1027

Query: 66   G-LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD 124
            G L  LSSL+ L L G+NF  +P  I QL  L+ L +  C  +++LPELP  +  L   +
Sbjct: 1028 GSLGYLSSLQVLLLKGNNFMRIPATIRQLSWLEVLDISYCKRLKALPELPQRIRVLVAHN 1087

Query: 125  CKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALP 184
            C  L+++       +    Q+  + Y    F F NCV L K    N   +   +  +   
Sbjct: 1088 CTSLKTVSSPLIQFQESQEQSPDDKY---GFTFANCVSLEKNARSNIVESALLKTQHLAT 1144

Query: 185  GILHRKETDRRRGIS--ICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAV 242
             +L    +     +S  +C  GS IP C FR Q+ G+S+T  LP +  N   +GF  CAV
Sbjct: 1145 AVLELLTSYEEILVSPVVCFPGSEIPEC-FRYQNTGASVTTLLPSKWHNNKLVGFTFCAV 1203

Query: 243  IEF 245
            IE 
Sbjct: 1204 IEL 1206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 146/303 (48%), Gaps = 50/303 (16%)

Query: 14   IKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC----NLKKLQKLCLSQCRCLILSG--- 66
            I +LPS I +++GL CL + +C    +L +  C     L K  ++ L   R L L G   
Sbjct: 950  ITKLPSPIGNLKGLACLEVGNCK---YLEDIHCFVGLQLSKRHRVDLDCLRKLNLDGCSL 1006

Query: 67   ------LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
                  L  LSSL+ L+LSG+N  ++P  I++L  L+ L L NC  ++SLPELP  L+ L
Sbjct: 1007 SEVPDSLGLLSSLEVLDLSGNNLRTIPISINKLFELQYLGLRNCKRLQSLPELPPRLSKL 1066

Query: 121  NTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKL---HKGTERNF--FANF 175
            +  +C+ L  L   SS +        GN +    F F NC++L   ++  E +   F  +
Sbjct: 1067 DVDNCQSLNYLVSRSSTV------VEGNIF---EFIFTNCLRLPVVNQILEYSLLKFQLY 1117

Query: 176  QRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFI 235
             +R+++ LP +            S CL G   P  WF  QS GS  T QL     N  F+
Sbjct: 1118 TKRLYHQLPDV-------PEGACSFCLPGDVTPE-WFSHQSWGSIATFQLSSHWVNSEFL 1169

Query: 236  GFALCAVIEFVADESSF-----FHFNVSCKYGSDHS-----FLLVDSMSVYSNHVILGFD 285
            GF+LCAVI F +   S      +HF    ++G  H      +   D   + S H+ +GFD
Sbjct: 1170 GFSLCAVIAFRSISHSLQVKCTYHFR--NEHGDSHDRYCYLYGWYDEKRIDSAHIFVGFD 1227

Query: 286  PLL 288
            P L
Sbjct: 1228 PCL 1230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 150/309 (48%), Gaps = 53/309 (17%)

Query: 14   IKELPSSIEHIEGLKCLRLNSCTKLGF--------LPESLCNLKKLQKLCLSQCRCL-IL 64
            I +LPS I +++GL CL + +C  L          LPE  C L  L+KL L  C+   + 
Sbjct: 936  ITKLPSPIGNLKGLACLEVGNCQHLRDIECIVDLQLPER-CKLDCLRKLNLDGCQIWEVP 994

Query: 65   SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD 124
              L  +SSL+ L+LSG+NF S+P  I++L  L+ L L NC  + SLPELP  L+ L+  +
Sbjct: 995  DSLGLVSSLEVLDLSGNNFRSIPISINKLFELQYLGLRNCRNLESLPELPPRLSKLDADN 1054

Query: 125  CKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGT---ERNF--FANFQRRV 179
            C  L+++   S+ +E       GN +    F F NC +L +     E +   F  + +R+
Sbjct: 1055 CWSLRTVSCSSTAVE-------GNIF---EFIFTNCKRLRRINQILEYSLLKFQLYTKRL 1104

Query: 180  HNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFAL 239
            ++ LP +            S CL G   P  WF  QS GS +T QL     +  F+GF+L
Sbjct: 1105 YHQLPDV-------PEEACSFCLPGDMTPE-WFSHQSWGSIVTFQLSSHWAHTKFLGFSL 1156

Query: 240  CAVIEFVADESSF-----FHF--------NVSCK----YGSDHSFLLVD---SMSVYSNH 279
            CAVI F +   S      +HF        ++ C     YG+D    L D      + S H
Sbjct: 1157 CAVIAFHSFSHSLQVKCTYHFHNEHGDSHDLYCYLHVCYGNDLYCYLHDWYGEKRINSKH 1216

Query: 280  VILGFDPLL 288
            + +G DP L
Sbjct: 1217 IFVGLDPCL 1225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495285|ref|XP_002276740.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 150/318 (47%), Gaps = 48/318 (15%)

Query: 1    MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQ-------- 52
            M+ L+E+ L  + I+ LPSSIE ++GL  L L  C  L  L   + N   L+        
Sbjct: 1007 MDNLKELLLDGTPIEVLPSSIERLKGLVLLNLRKCKNLLSLSNGISNGIGLRLPSSFSSF 1066

Query: 53   ----KLCLSQCRCL---ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105
                 L +S C+ +   I +G+ SL SLK L+LS +NF S+P GIS+L  LK L L  C 
Sbjct: 1067 RSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRNNFLSIPAGISELTNLKDLRLAQCQ 1126

Query: 106  MIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVK--- 162
             +  +PELP  +  ++  +C  L  LP  SS           ++   + F F NC K   
Sbjct: 1127 SLTGIPELPPSVRDIDAHNCTSL--LPGSSSV----------STLQGLQFLFYNCSKPVE 1174

Query: 163  ----LHKGTERNFFANFQRRVHNALPGI----LHRKETDRRRGISICLRGSGIPHCWFRT 214
                  K TE   F +       +   +    +  ++       SI   G+GIP  W   
Sbjct: 1175 DQSSDDKRTELQIFPHIYVSSTASDSSVTTSPVMMQKLLENIAFSIVFPGTGIPE-WIWH 1233

Query: 215  QSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADE------SSFFHFNVSCKYGSDHSFL 268
            Q++GSSI IQLP    + +F+GFALC+V+E + +       S  F++     +G  H F 
Sbjct: 1234 QNVGSSIKIQLPTNWYSDDFLGFALCSVLEHLPERIICHLNSDVFNYGDLKDFG--HDFH 1291

Query: 269  LVDSMSVYSNHVILGFDP 286
               ++ V S HV LG+ P
Sbjct: 1292 WTGNI-VGSEHVWLGYQP 1308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.586	0.139	0.353	6.9e-21
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.593	0.142	0.311	1.1e-16
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.682	0.160	0.268	4.8e-16
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.589	0.410	0.306	4.4e-15
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.606	0.147	0.312	1e-14
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.655	0.161	0.276	2.1e-13
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.541	0.124	0.305	2.5e-13
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.572	0.142	0.288	3.5e-13
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.586	0.145	0.286	4.1e-13
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.568	0.135	0.272	1.2e-09

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
 Identities = 65/184 (35%), Positives = 92/184 (50%)

Query:    80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
             G+N E+LP   +QL  LK   L  C M++SLP LP  L YL+  +C+ L++L   ++ L 
Sbjct:   887 GNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETL---ANPL- 942

Query:   140 TPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDR----R 195
             TP   T G   +  MF F NC KL++  + +   +   R+ + L      K   R     
Sbjct:   943 TPL--TVGER-IHSMFIFSNCYKLNQDAQASLVGH--ARIKSQLMANASAKRYYRGFVPE 997

Query:   196 RGISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHF 255
               + IC   + IP  WF  Q LG S+ I LP   C+ NF+G AL  V+ F   E S   F
Sbjct:   998 PLVGICYPATEIPS-WFCHQRLGRSLEIPLPPHWCDINFVGLALSVVVSFKDYEDSAKRF 1056

Query:   256 NVSC 259
             +V C
Sbjct:  1057 SVKC 1060

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 57/183 (31%), Positives = 80/183 (43%)

Query:    81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLET 140
             +N E+LP  I +L  L  L L +C  ++SLP LP  L YL+   C    SL  +S  L  
Sbjct:   877 NNIETLPESIEKLYSLLLLDLKHCCRLKSLPLLPSNLQYLDAHGCG---SLENVSKPLTI 933

Query:   141 PSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRG--I 198
             P    R    +   F F +C KL++  + +  A  Q +         H           +
Sbjct:   934 PLVTER----MHTTFIFTDCFKLNQAEKEDIVAQAQLKSQLLARTSRHHNHKGLLLDPLV 989

Query:   199 SICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFH-FNV 257
             ++C  G  IP  WF  Q +GS I   L    CN  FIG +LC V+ F   E    +  +V
Sbjct:   990 AVCFPGHDIPS-WFSHQKMGSLIETDLLPHWCNSKFIGASLCVVVTFKDHEGHHANRLSV 1048

Query:   258 SCK 260
              CK
Sbjct:  1049 RCK 1051

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
 Identities = 59/220 (26%), Positives = 100/220 (45%)

Query:    82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETP 141
             N  +L   +  +  LK L L  C  + SLP LP  L  LN   C  L+++    + L TP
Sbjct:   854 NIRTLRFDMGHMFHLKWLELKYCKNLTSLPILPPNLQCLNAHGCTSLRTVASPQT-LPTP 912

Query:   142 SNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISIC 201
             + Q          F F NC +L +   +N   ++ ++    +    +  +   +  I  C
Sbjct:   913 TEQIHST------FIFTNCHELEQ-VSKNAIISYVQKKSKLMSADRYSPDFVYKSLIGTC 965

Query:   202 LRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEF--VADESSFFHFNVSC 259
               G  IP  WF  Q+LGS + ++LP+   +   IG ALC V+ F    D++S      +C
Sbjct:   966 FPGCEIP-AWFNHQALGSVLILELPQAWNSSRIIGIALCVVVSFKEYRDQNSSLQVQCTC 1024

Query:   260 KYG----SDHSFLLV-------DSMSVYSNHVILGFDPLL 288
             ++     S  SF++        ++ +V S+H+ +G+  LL
Sbjct:  1025 EFTNVSLSQESFMVGGWSEQGDETHTVESDHIFIGYTTLL 1064

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 57/186 (30%), Positives = 91/186 (48%)

Query:    81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLET 140
             ++ E+LP  I +L  LK L+L NC  + SLP LP    YL+   C  L+++ K  + L  
Sbjct:    62 NSIENLPGSIKKLHHLKSLYLKNCKNLISLPVLP-SNQYLDVHGCISLETVSKPMTLLVI 120

Query:   141 PSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRR---VHNALPGILHRKETDRR-- 195
              + +T         F F +C KL++  +    A+ Q +   + N    + H+ ++     
Sbjct:   121 -AEKTHST------FVFTDCYKLNRDAQEKIVAHTQLKSQILANRSFQLNHKVQSLELVL 173

Query:   196 RGIS-ICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFH 254
               +S +   G+ +P  WFR Q +GSS+   LP   C+  FIG +LC V+ F   E     
Sbjct:   174 EPLSAVSFPGNDLP-LWFRHQRIGSSMETNLPSHWCDDKFIGLSLCTVVSFKDYEDRTSR 232

Query:   255 FNVSCK 260
             F+V CK
Sbjct:   233 FSVICK 238

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
 Identities = 59/189 (31%), Positives = 87/189 (46%)

Query:    80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
             G++ ESL   ISQL  LK L L NC  ++S+  LP  L  L+   C    SL ++ S L 
Sbjct:   896 GNDIESLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDAHGC---DSLEEVGSPLA 952

Query:   140 TPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETD--RRRG 197
                    G  +   +F   NC KL +  E N  + F  R    +   L+R          
Sbjct:   953 VL--MVTGKIHCTYIF--TNCNKLDQVAESNIIS-FTWRKSQMMSDALNRYNGGFVLESL 1007

Query:   198 ISICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEF--VADESSFFHF 255
             +S C  G  +P   F  Q+ G+ +  +LPR  C+    G ALCAVI F     +S+ F  
Sbjct:  1008 VSTCFPGCEVPAS-FDHQAYGALLQTKLPRHWCDSRLTGIALCAVILFPDYQHQSNRFLV 1066

Query:   256 NVSCKYGSD 264
               +C++G++
Sbjct:  1067 KCTCEFGTE 1075

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 59/213 (27%), Positives = 99/213 (46%)

Query:    85 SLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQ 144
             +L   I+QL  LK L L  C  + S+P LP  L  L+   C++L+++    + L+    Q
Sbjct:   868 NLQIDINQLYHLKWLDLKYCKNLTSIPLLPPNLEILDAHGCEKLKTVASPMALLKL-MEQ 926

Query:   145 TRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISI-CLR 203
              +        F F NC  L +  + +  +  QR+  + L      KE      + I C  
Sbjct:   927 VQSK------FIFTNCNNLEQVAKNSITSYAQRK--SQLDARRCYKEGGVSEALFIACFP 978

Query:   204 GSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEF--VADESSFFHFNVSCKY 261
             GS +P  WF  Q+ GS++ ++LP   C+      ALCAV+ F    DE + F    +C++
Sbjct:   979 GSDVPS-WFNYQTFGSALRLKLPPHWCDNRLSTIALCAVVTFPDTQDEINRFSIECTCEF 1037

Query:   262 GSD------HSFLL----VDSMSVYSNHVILGF 284
              ++       S  L    ++S  + S+HV +G+
Sbjct:  1038 KNELGTCIRFSCTLGGSWIESRKIDSDHVFIGY 1070

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
 Identities = 51/167 (30%), Positives = 74/167 (44%)

Query:    81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLET 140
             + F  LP  I  L  L  L L +C  + S+P LP  L +L+   C  L+++  +S  L  
Sbjct:   881 NEFRILPRSIGYLYHLNWLDLKHCKNLVSVPMLPPNLQWLDAHGCISLETISILSDPLLA 940

Query:   141 PSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRG--I 198
              +       +L   F F NC KL+K  E N   ++ R+    +   L R E        I
Sbjct:   941 ETE------HLHSTFIFTNCTKLYK-VEENSIESYPRKKIQLMSNALARYEKGLALDVLI 993

Query:   199 SICLRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEF 245
              IC  G  +P  WF  +++G  +   LPR        G ALCAV+ F
Sbjct:   994 GICFPGWQVPG-WFNHRTVGLELKQNLPRHWNAGGLAGIALCAVVSF 1039

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 51/177 (28%), Positives = 79/177 (44%)

Query:    86 LPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK-ISSCLETPSNQ 144
             LP GI+Q+ +L  L L  C  +  +PELP  L YL+   C  L+++ K ++  + T  N 
Sbjct:   830 LPAGINQVSQLTRLDLKYCTKLTYVPELPPTLQYLDAHGCSSLKNVAKPLARIMSTVQNH 889

Query:   145 TRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRG 204
                  Y    F F NC  L +  +    +  QR+         H  E       S C  G
Sbjct:   890 -----YT---FNFTNCGNLEQAAKEEITSYAQRKCQLLSDARKHYNEGSEAL-FSTCFPG 940

Query:   205 SGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKY 261
               +P  WF  +++GS +  +L     +K   G ALCAV+ F   +     F+V+C +
Sbjct:   941 CEVPS-WFGHEAVGSLLQRKLLPHWHDKRLSGIALCAVVSFPDSQDQLSCFSVTCTF 996

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
 Identities = 51/178 (28%), Positives = 81/178 (45%)

Query:    85 SLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL--PKISSCLETPS 142
             +L   +     LKCL + NC  +R LP LP CL YLN   C+RL+S+  P ++  L    
Sbjct:   896 NLQDNLKDFSNLKCLVMKNCENLRYLPSLPKCLEYLNVYGCERLESVENPLVADRLTLFL 955

Query:   143 NQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICL 202
             +++     L   F F NC  L +  + +     + + H  L    + ++       + C 
Sbjct:   956 DRSEE---LRSTFLFTNCHNLFQDAKDSISTYAKWKCHR-LAVECYEQDIVSGAFFNTCY 1011

Query:   203 RGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFF-HFNVSC 259
              G  +P  WF  Q++GS +  +L     N    G ALCAV+ F  ++      F+V C
Sbjct:  1012 PGYIVPS-WFDHQAVGSVLEPRLEPHWYNTMLSGIALCAVVSFHENQDPIIGSFSVKC 1068

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 49/180 (27%), Positives = 80/180 (44%)

Query:    86 LPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK-ISSCLETPSNQ 144
             LP GISQL +LK L L  C  + S+PE P  L  L+   C  L+++ K ++  + T  N 
Sbjct:   854 LPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNH 913

Query:   145 TRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETD---RRRGISIC 201
             +         F F NC  L +  +    +  QR+    L     ++           S C
Sbjct:   914 ST--------FIFTNCENLEQAAKEEITSYAQRKCQ--LLSYARKRYNGGLVSESLFSTC 963

Query:   202 LRGSGIPHCWFRTQSLGSSITIQLPRRCCNKNFIGFALCAVIEFVADESSFFHFNVSCKY 261
               G  +P  WF  +++GS + ++L     +K   G ALCAV+  +  +      +V+C +
Sbjct:   964 FPGCEVPS-WFCHETVGSELEVKLLPHWHDKKLAGIALCAVVSCLDPQDQVSRLSVTCTF 1022

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-12
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 46/269 (17%)

Query: 9    LFLSGIK---ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--- 62
            LFLS I    ELPSSI+++  L+ L + +C  L  LP  + NL+ L+ L LS C  L   
Sbjct: 783  LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841

Query: 63   --ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
              I + +S L+      LS    E +P  I +   L  L +  CN ++ +      L +L
Sbjct: 842  PDISTNISDLN------LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895

Query: 121  NT---SDCKRLQSLPKISSCLETPSNQTRGNSYLP--VMFKFVNCVKLHKGTERNFFANF 175
             T   SDC  L       S  E        +S LP  V   F+NC  L            
Sbjct: 896  ETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD----------- 944

Query: 176  QRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSIT-IQLPRRCCNKNF 234
                       L ++++  +    + L G  +P  +F  ++ G+S+T I L      + F
Sbjct: 945  --------QEALLQQQSIFK---QLILSGEEVP-SYFTHRTTGASLTNIPLLHISPCQPF 992

Query: 235  IGFALCAVIEFVA--DESSFFHFNVSCKY 261
              F  CAV++  +    S  F   V C++
Sbjct: 993  FRFRACAVVDSESFFIISVSFDIQVCCRF 1021

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 24/118 (20%)

Query: 4   LQEIDLFLS-GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           L+ IDL  S  +KE+P  +     L+ L+L+ C+ L  LP S+  L KL+ L +S+C   
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC--- 691

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
                              N E LPTGI+ L+ L  L+L  C+ ++S P++   +++L
Sbjct: 692 ------------------ENLEILPTGIN-LKSLYRLNLSGCSRLKSFPDISTNISWL 730

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 3/144 (2%)

Query: 3   LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
            L  +DL  + I ++P  I  ++        S  K+  LP  L NL  L+ L LS     
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176

Query: 63  ILSGLSS-LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLN 121
            L  L S LS+L  L+LSG+    LP  I  L  L+ L L N N I  L      L  L+
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLS 235

Query: 122 TSDCKRLQSLPKISSCLETPSNQT 145
             +    +      S +   SN  
Sbjct: 236 GLELSNNKLEDLPES-IGNLSNLE 258

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 11  LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG---- 66
           LSG  E+P  I  +  L  L L      G +P SL NLK LQ L L Q +   LSG    
Sbjct: 224 LSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK---LSGPIPP 278

Query: 67  -LSSLSSLKCLELSGHNFES--LPTGISQLQRLKCLHLINCNMIRSLPE 112
            + SL  L  L+LS  N  S  +P  + QLQ L+ LHL + N    +P 
Sbjct: 279 SIFSLQKLISLDLS-DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.46
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.11
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.09
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.08
PLN03150	623	hypothetical protein; Provisional	99.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.92
PRK15386	426	type III secretion protein GogB; Provisional	98.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.79
PLN03150	623	hypothetical protein; Provisional	98.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.4
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.36
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.35
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.11
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.06
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.91
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.84
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.58
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.52
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.46
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.39
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.55
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.33
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.74
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.67
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.67
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.27
smart00370	26	LRR Leucine-rich repeats, outliers.	93.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.19
smart00370	26	LRR Leucine-rich repeats, outliers.	93.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.35
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.17
KOG4341	483	consensus F-box protein containing LRR [General fu	89.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.19
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.6
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.63

>PLN03210 Resistant to P

Probab=99.95  E-value=1.3e-26  Score=240.47  Aligned_cols=256  Identities=25%  Similarity=0.353  Sum_probs=191.8

Q ss_pred             CceeEEEcccC-CCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917            2 ELLQEIDLFLS-GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS   79 (290)
Q Consensus         2 ~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls   79 (290)
                      ++|+.|+|++| .+.++|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+. .+.  ...+|+.|+|+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls  854 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLS  854 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECC
Confidence            47889999987 556699999999999999999999999999877 89999999999998664 122  24689999999


Q ss_pred             CccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCCCCCcc--cCCCCCCCCcE
Q 022917           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSN--QTRGNSYLPVM  154 (290)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~  154 (290)
                      +|.++.+|.++..+++|+.|++++|+.++.+|..   +++|+.+++++|.+|..++...........  .....-.....
T Consensus       855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~  934 (1153)
T PLN03210        855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVC  934 (1153)
T ss_pred             CCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhc
Confidence            9999999999999999999999999999999875   467888899999999876542211100000  00000001234


Q ss_pred             EEEeCCcCchhhhhhhhhHHHHHHHhhhcccchhccccCCCceeEEEecCCCCCCcceeeccCCceEE-EecCCCCCCCc
Q 022917          155 FKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKETDRRRGISICLRGSGIPHCWFRTQSLGSSIT-IQLPRRCCNKN  233 (290)
Q Consensus       155 l~~~~C~~L~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pg~~iP~~Wf~~~~~g~sit-i~lp~~~~~~~  233 (290)
                      +.|.+|.+|++.+.  +               +.     ......+++||.++|+ ||.||+.|++++ |++|+.|....
T Consensus       935 l~f~nC~~L~~~a~--l---------------~~-----~~~~~~~~l~g~evp~-~f~hr~~g~sl~~i~l~~~~~~~~  991 (1153)
T PLN03210        935 INFINCFNLDQEAL--L---------------QQ-----QSIFKQLILSGEEVPS-YFTHRTTGASLTNIPLLHISPCQP  991 (1153)
T ss_pred             cccccccCCCchhh--h---------------cc-----cccceEEECCCccCch-hccCCcccceeeeeccCCcccCCC
Confidence            57899999987542  1               00     1123467899999999 999999999999 99999999889


Q ss_pred             eeeEEEEEEEeeccCcCCcceeEEE--EEEe-cCCceeEEeccccccceEEEEEEcc
Q 022917          234 FIGFALCAVIEFVADESSFFHFNVS--CKYG-SDHSFLLVDSMSVYSNHVILGFDPL  287 (290)
Q Consensus       234 ~~gf~~c~v~~~~~~~~~~~~~~~~--c~~~-~~~~~~~~~~~~~~sdh~~~~y~~~  287 (290)
                      +.||++|+|+++.+.......+.+.  |.+. .+|..+.    ...++|+|+.|..+
T Consensus       992 ~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~----~~~~~~~~~~~~~~ 1044 (1153)
T PLN03210        992 FFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFD----SPYQPHVFSVTKKG 1044 (1153)
T ss_pred             ccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccc----cCCCceeEeeeccc
Confidence            9999999999887653332344454  4444 4455443    34667777766654

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=9.3e-16  Score=123.33  Aligned_cols=134  Identities=28%  Similarity=0.390  Sum_probs=94.0

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~L   78 (290)
                      .+|+.|++.+|+|+++|.++..+++|+.|++..| .+..+|.+++.++.|+.||+.+|+.-+   |..|..++.|+.|+|
T Consensus        56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            4667777777777777777777777777777663 345667777777777777777765332   555666677777777


Q ss_pred             eCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCC
Q 022917           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCL  138 (290)
Q Consensus        79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~  138 (290)
                      ++|.|+.+|..++++++|+.|.+.+|. +-++|..   +..|++|++.+ ..+..+|.....+
T Consensus       135 ~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l  195 (264)
T KOG0617|consen  135 GDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANL  195 (264)
T ss_pred             cCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhh
Confidence            777777788888888888888888866 5566753   46778888887 4566677655444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.46  E-value=1.3e-13  Score=141.94  Aligned_cols=131  Identities=28%  Similarity=0.368  Sum_probs=76.2

Q ss_pred             CceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      ++|++|+|++|.++. +|..++.+++|++|++++|.+.+.+|..++++++|++|++++|....  +..++.+++|+.|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            445555555555553 55566666666666666666666666666666666666666665332  445556666666666


Q ss_pred             eCccCC-ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCC
Q 022917           79 SGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        79 s~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~  132 (290)
                      ++|.+. .+|..++++++|+.|++++|...+.+|..   +++|+.|++++|.-...+|
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence            666655 55656666666666666666555555532   3455555555554333333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=2.9e-13  Score=139.34  Aligned_cols=134  Identities=24%  Similarity=0.332  Sum_probs=110.0

Q ss_pred             CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +++|++|+|++|.+.+ +|..++++++|++|++++|...+.+|..++++++|+.|++++|....  +..++.+++|++|+
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            4689999999998875 88889999999999999999888899999999999999999987543  56678888899999


Q ss_pred             eeCccCC-ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917           78 LSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        78 Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      +++|.+. .+|..++++++|+.|++++|...+.+|..   +++|+.|++++|.....+|..
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  303 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL  303 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence            9988876 77888888888888888888877777753   467888888877655555543

>PLN03210 Resistant to P

Probab=99.38  E-value=3.5e-12  Score=133.21  Aligned_cols=127  Identities=28%  Similarity=0.378  Sum_probs=62.5

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n   81 (290)
                      +|+.|++.++.++.+|..+ ...+|+.|++.+|. +..+|.++..+++|+.|++++|..+. ++.++.+++|+.|++++|
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC  667 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence            3555555555555555544 34555555555533 33445455555555555555544322 334444555555555554


Q ss_pred             c-CCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCC
Q 022917           82 N-FESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSL  131 (290)
Q Consensus        82 ~-l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l  131 (290)
                      . +..+|..++++++|+.|++++|+.++.+|..  +++|+.|++++|..++.+
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~  720 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF  720 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence            3 3455555555555555555555555555442  344555555554444333

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=1.6e-13  Score=110.54  Aligned_cols=133  Identities=29%  Similarity=0.388  Sum_probs=112.9

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS   79 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls   79 (290)
                      |.+++.|.|++|.++.+|+.|..|.+|+.|++++|+ ++.+|.+|+.+++|+.|+++-|+... |.+||.++.|+.|||+
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence            457888999999999999999999999999999855 68899999999999999999887433 8999999999999999


Q ss_pred             CccCC--ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCC
Q 022917           80 GHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        80 ~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      .|++.  .+|..+..+..|+.|++++|. .+.+|..   +++|+.|.+.++ .+-++|...+
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig  170 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIG  170 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHH
Confidence            99986  899999999999999999966 7788865   456677777663 4555665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.11  E-value=1.6e-12  Score=116.87  Aligned_cols=142  Identities=29%  Similarity=0.348  Sum_probs=114.0

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccC
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNF   83 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l   83 (290)
                      |..|++.+|.++++|+..-.++.|++||... +.++.+|+.++.+.+|..|++..|.....++|+++..|++|.++.|.+
T Consensus       162 l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  162 LSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI  240 (565)
T ss_pred             HHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH
Confidence            4556777777777776655577888888776 456889999999999999999999988888999999999999999999


Q ss_pred             CccChhhc-CCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCCCCCcccCCCC
Q 022917           84 ESLPTGIS-QLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGN  148 (290)
Q Consensus        84 ~~lp~~l~-~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~  148 (290)
                      +.+|+... ++++|..||+++|+ +++.|..   +.+|++||+++ ..+..+|...+.+-+..+.+.+|
T Consensus       241 ~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGN  307 (565)
T KOG0472|consen  241 EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGN  307 (565)
T ss_pred             HhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCC
Confidence            99998876 89999999999966 8999974   57899999987 57888887776653333333333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.09  E-value=6.4e-12  Score=118.53  Aligned_cols=131  Identities=29%  Similarity=0.417  Sum_probs=90.5

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----cCCCCCCCCCCEEEe
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----LSGLSSLSSLKCLEL   78 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l~~l~~L~~L~L   78 (290)
                      +|+.|+|++|.|+++.-.++...+|+.|+++.|+ +..+|..++.|++|+.|.+.+|. ++    |.++|.+..|+.+..
T Consensus       246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             hhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHh
Confidence            4445555555555544444444455555555533 34566666666666666666665 33    677888888999988


Q ss_pred             eCccCCccChhhcCCccccEEecccCcCCccCCC---CCcccceeccccccccCCCCCCCC
Q 022917           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE---LPFCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      ++|.++-+|.++..+..|+.|.|+.|. +-.+|+   +++.|+.||+.++++|.--|....
T Consensus       324 anN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  324 ANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPND  383 (1255)
T ss_pred             hccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence            888888889999999999999988755 667887   357889999999888876665433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.08  E-value=1.1e-11  Score=116.92  Aligned_cols=101  Identities=27%  Similarity=0.375  Sum_probs=65.3

Q ss_pred             eeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-------------------
Q 022917            4 LQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-------------------   63 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-------------------   63 (290)
                      +-+|+|++|+|..+|.+ +-+|+.|-.|||++| .++.+|+.+..|..|++|.|++|....                   
T Consensus       128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             cEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence            34444555555444444 334455555555552 345566666667777777777776221                   


Q ss_pred             --------cCCCCCCCCCCEEEeeCccCCccChhhcCCccccEEecccCc
Q 022917           64 --------LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN  105 (290)
Q Consensus        64 --------~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~  105 (290)
                              |..+..+.+|..+|+|.|++..+|..+.++++|+.|+|++|.
T Consensus       207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  207 TQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             ccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence                    455667778888888888888888888888888888888765

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=8.3e-10  Score=108.51  Aligned_cols=106  Identities=28%  Similarity=0.422  Sum_probs=67.0

Q ss_pred             CcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCC-ccChhhcCCccccEEeccc
Q 022917           27 LKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLIN  103 (290)
Q Consensus        27 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~l~~  103 (290)
                      ++.|+|++|.+.+.+|..++.+++|+.|+|++|....  +..++.+++|+.|+|++|.++ .+|..++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            5566666666666666666667777777776665332  345666677777777777766 5666677777777777777


Q ss_pred             CcCCccCCCCC----cccceeccccccccCCCC
Q 022917          104 CNMIRSLPELP----FCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus       104 c~~l~~lp~~~----~~L~~L~l~~c~~l~~l~  132 (290)
                      |+..+.+|..+    ..+..+++.++..+...|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            76666666532    234456666655554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.99  E-value=8.8e-11  Score=110.11  Aligned_cols=123  Identities=22%  Similarity=0.256  Sum_probs=69.1

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-----------------
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-----------------   63 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-----------------   63 (290)
                      .++++|+|+.|+++.+.+. +..|+.|+.|++++|.+...-+++....++|+.|+|+.|...+                 
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            3455555555555554333 4455555555555555444444444455555555555554222                 


Q ss_pred             ---------cCCCCCCCCCCEEEeeCccCC----ccChhhcCCccccEEecccCcCCccCCC----CCcccceeccccc
Q 022917           64 ---------LSGLSSLSSLKCLELSGHNFE----SLPTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC  125 (290)
Q Consensus        64 ---------~~~l~~l~~L~~L~Ls~n~l~----~lp~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c  125 (290)
                               ...|..+++|+.|||+.|.+.    .-...+..|++|+.|.+.+|+ ++.+|.    .+..|++|++.++
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC
Confidence                     123555667777777777644    222245567777777777754 666664    3466777777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=1.2e-09  Score=89.91  Aligned_cols=112  Identities=30%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             cCCCcccCccccCCCCCcEEeccCCCCCCcCccccC-CCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccChh
Q 022917           11 LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTG   89 (290)
Q Consensus        11 ~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~   89 (290)
                      .+.|+..|. +.+..+++.|+|++|.+.. + +.++ .+.+|+.|++++|...+++++..++.|+.|++++|.++.+...
T Consensus         6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen    6 ANMIEQIAQ-YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred             ccccccccc-ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence            344444544 4455566777777755432 2 2344 4667777777777766666677777777777777777766554


Q ss_pred             h-cCCccccEEecccCcCCccCCCC-----Ccccceecccccc
Q 022917           90 I-SQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCK  126 (290)
Q Consensus        90 l-~~l~~L~~L~l~~c~~l~~lp~~-----~~~L~~L~l~~c~  126 (290)
                      + ..+++|+.|++++|+ +..+.+.     +++|+.|++.+++
T Consensus        83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence            4 356777777777654 3333332     3556666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.92  E-value=9.3e-12  Score=111.99  Aligned_cols=161  Identities=26%  Similarity=0.337  Sum_probs=125.9

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS   79 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls   79 (290)
                      +..|.+|++++|++.++|+.++.+..++.|+.+.|+ +..+|+.++.+.+|..|+.+.|...+ +++++.+..|+.++..
T Consensus        67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence            356889999999999999999999999999999965 46789999999999999999998666 6788899999999999


Q ss_pred             CccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCCC-CCcccCCCCCCCCcEE
Q 022917           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLE-TPSNQTRGNSYLPVMF  155 (290)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~l  155 (290)
                      +|++.++|.++..+.+|..|++.+|+ ++.+|+.   ++.|++||... ..++++|...+..+ +..+.+..|++.... 
T Consensus       146 ~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-  222 (565)
T KOG0472|consen  146 NNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLP-  222 (565)
T ss_pred             ccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCC-
Confidence            99999999999999999999999876 5555542   46788887754 56888888766542 222333444443333 


Q ss_pred             EEeCCcCchh
Q 022917          156 KFVNCVKLHK  165 (290)
Q Consensus       156 ~~~~C~~L~~  165 (290)
                      .|..|..|.+
T Consensus       223 ef~gcs~L~E  232 (565)
T KOG0472|consen  223 EFPGCSLLKE  232 (565)
T ss_pred             CCCccHHHHH
Confidence            6778877766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.92  E-value=3.3e-09  Score=105.43  Aligned_cols=17  Identities=41%  Similarity=0.616  Sum_probs=11.8

Q ss_pred             CCCEEEeeCccCCccCh
Q 022917           72 SLKCLELSGHNFESLPT   88 (290)
Q Consensus        72 ~L~~L~Ls~n~l~~lp~   88 (290)
                      +|+.|+|++|+++.+|.
T Consensus       343 ~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        343 GLQELSVSDNQLASLPT  359 (788)
T ss_pred             ccceEecCCCccCCCCC
Confidence            57777777777776664

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.89  E-value=8.6e-09  Score=94.92  Aligned_cols=113  Identities=28%  Similarity=0.485  Sum_probs=81.6

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      .+++.|++++|.|+.+|.   -..+|+.|.+++|..+..+|..+  .++|+.|++++|..+.  .  -..+|+.|+++++
T Consensus        52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~--s--LP~sLe~L~L~~n  122 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS--G--LPESVRSLEIKGS  122 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--c--cccccceEEeCCC
Confidence            578999999999999983   24579999999999999999765  4689999999996443  1  1246888888876


Q ss_pred             c---CCccChhhcCC------------------ccccEEecccCcCCccCC-CCCcccceecccc
Q 022917           82 N---FESLPTGISQL------------------QRLKCLHLINCNMIRSLP-ELPFCLNYLNTSD  124 (290)
Q Consensus        82 ~---l~~lp~~l~~l------------------~~L~~L~l~~c~~l~~lp-~~~~~L~~L~l~~  124 (290)
                      .   +..+|.++..|                  ++|++|++.+|..+. +| .+|.+|+.|+++.
T Consensus       123 ~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        123 ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHI  186 (426)
T ss_pred             CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEecc
Confidence            5   45777666544                  256677777766443 33 3556677777654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.87  E-value=2.8e-10  Score=106.75  Aligned_cols=105  Identities=24%  Similarity=0.243  Sum_probs=77.3

Q ss_pred             CCceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      |++|+.|.|..|.|..+.+. |..+.++++|+|+.|.....--.++.+|++|+.|++|+|.+-.  ++.+...++|+.|+
T Consensus       244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD  323 (873)
T ss_pred             chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence            34566666666666666555 6677888888888877665556678889999999999987433  67788889999999


Q ss_pred             eeCccCCccCh-hhcCCccccEEecccCc
Q 022917           78 LSGHNFESLPT-GISQLQRLKCLHLINCN  105 (290)
Q Consensus        78 Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~  105 (290)
                      |+.|+++.+++ ++..|..|+.|.|++|.
T Consensus       324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  324 LSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             ccccccccCChhHHHHHHHhhhhcccccc
Confidence            99999998864 45556666666666543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.83  E-value=1.5e-08  Score=100.75  Aligned_cols=108  Identities=24%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCC
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFE   84 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~   84 (290)
                      ..|+++++.++++|+.+.  ++|+.|++.+|++ ..+|.   .+++|++|++++|....++.  ..++|+.|++++|.++
T Consensus       204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~L-t~LP~---lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~  275 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT  275 (788)
T ss_pred             cEEEcCCCCCCcCCcchh--cCCCEEEccCCcC-CCCCC---CCCCCcEEEecCCccCcccC--cccccceeeccCCchh
Confidence            467777777777777654  3677777777543 44564   24667777777775333322  1245555555555555


Q ss_pred             ccChhhcCCccccEEecccCcCCccCCCCCcccceecccc
Q 022917           85 SLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD  124 (290)
Q Consensus        85 ~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~  124 (290)
                      .+|...   .+|+.|++++|+ +..+|..+++|+.|++++
T Consensus       276 ~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~  311 (788)
T PRK15387        276 HLPALP---SGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD  311 (788)
T ss_pred             hhhhch---hhcCEEECcCCc-cccccccccccceeECCC
Confidence            444321   234444444432 334444444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.83  E-value=8.8e-09  Score=102.58  Aligned_cols=114  Identities=28%  Similarity=0.397  Sum_probs=64.4

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|+.|+|++|.|+++|..+.  ++|+.|++++|.+ ..+|..+.  .+|+.|+|++|....++. .-..+|+.|++++|
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~L~~LP~-~l~s~L~~L~Ls~N  272 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSINRITELPE-RLPSALQSLDLFHN  272 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcCCccCcCCh-hHhCCCCEEECcCC
Confidence            357788888888888877653  4777888877654 45665442  356777777666333211 01235666666666


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCC-CCcccceecccc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSD  124 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~  124 (290)
                      +++.+|..+.  ++|+.|++++|+ +..+|. ++.+|+.|++++
T Consensus       273 ~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~  313 (754)
T PRK15370        273 KISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQS  313 (754)
T ss_pred             ccCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcC
Confidence            6666655443  356666666553 334443 223344444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=2.6e-09  Score=88.00  Aligned_cols=118  Identities=27%  Similarity=0.322  Sum_probs=48.0

Q ss_pred             ceeEEEcccCCCcccCcccc-CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC-CC-CCCCCCCEEEee
Q 022917            3 LLQEIDLFLSGIKELPSSIE-HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS-GL-SSLSSLKCLELS   79 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~-~l-~~l~~L~~L~Ls   79 (290)
                      .+++|+|++|.|+.+.. ++ .+.+|+.|++++|.+. .++ .+..++.|++|++++|...++. .+ ..+++|+.|+++
T Consensus        20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             ----------------S---TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccccccc-hhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence            57899999999998754 66 6899999999997764 454 5778999999999999966553 23 358999999999


Q ss_pred             CccCCccC--hhhcCCccccEEecccCcCCccCCC-------CCcccceecccc
Q 022917           80 GHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-------LPFCLNYLNTSD  124 (290)
Q Consensus        80 ~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~-------~~~~L~~L~l~~  124 (290)
                      +|++..+-  ..+..+++|+.|++.+|+... .+.       .+|+|+.||-..
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence            99987553  357789999999999988543 343       146677776544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.79  E-value=1.4e-08  Score=101.06  Aligned_cols=121  Identities=27%  Similarity=0.428  Sum_probs=88.9

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~   82 (290)
                      +...|+++++.++++|..+.  ++|+.|++++|.+ ..+|..+.  ++|+.|++++|....++. .-..+|+.|+|++|.
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCC-CcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCCc
Confidence            46788888888888887664  5788899988754 46777654  588999999887433221 123478899999998


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCC-CCcccceeccccccccCCCCC
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      +..+|..+.  ++|+.|++++|+ +..+|. ++.+|+.|++++| .++.+|.
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N-~Lt~LP~  300 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNK-ISCLPENLPEELRYLSVYDN-SIRTLPA  300 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCc-cCccccccCCCCcEEECCCC-ccccCcc
Confidence            888887764  578899998765 557776 4568889998886 5666664

>PLN03150 hypothetical protein; Provisional

Probab=98.79  E-value=1.3e-08  Score=100.07  Aligned_cols=109  Identities=21%  Similarity=0.361  Sum_probs=96.2

Q ss_pred             eeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeC
Q 022917            4 LQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSG   80 (290)
Q Consensus         4 L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~   80 (290)
                      ++.|+|+++.+++ +|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|....  |..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            7889999999987 89999999999999999999999999999999999999999998543  67789999999999999


Q ss_pred             ccCC-ccChhhcCC-ccccEEecccCcCCccCCC
Q 022917           81 HNFE-SLPTGISQL-QRLKCLHLINCNMIRSLPE  112 (290)
Q Consensus        81 n~l~-~lp~~l~~l-~~L~~L~l~~c~~l~~lp~  112 (290)
                      |.++ .+|..++.+ .++..+++.+|..+...|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            9988 899988764 4678899999887766554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.78  E-value=7.1e-10  Score=108.72  Aligned_cols=103  Identities=29%  Similarity=0.462  Sum_probs=64.5

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      ++|+.|+|++|.+..+|.+ +.++..|+.|+|+||+ +..+|..+.++..|++|...+|..+..+++..++.|+.+|++.
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~  461 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC  461 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc
Confidence            4566666666666666665 5666666666666643 3566666666666666666666655555666666677777776


Q ss_pred             ccCC--ccChhhcCCccccEEecccCcC
Q 022917           81 HNFE--SLPTGISQLQRLKCLHLINCNM  106 (290)
Q Consensus        81 n~l~--~lp~~l~~l~~L~~L~l~~c~~  106 (290)
                      |+++  .+|..... ++|++|+++||..
T Consensus       462 N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  462 NNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             chhhhhhhhhhCCC-cccceeeccCCcc
Confidence            6655  34433222 5666777766654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.71  E-value=1.2e-09  Score=95.38  Aligned_cols=120  Identities=28%  Similarity=0.298  Sum_probs=88.5

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCC-CCCCCCCEEEeeCc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL-SSLSSLKCLELSGH   81 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l-~~l~~L~~L~Ls~n   81 (290)
                      .|++|||++|.|+.+..++.-+++++.|+++.|.+...  .++..+++|+.||||+|...+..++ ..+-+.++|.|++|
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            57889999999999999998899999999999776543  3477889999999999974444333 24567788888888


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCC-----CCcccceecccccc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCK  126 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-----~~~~L~~L~l~~c~  126 (290)
                      .++++. ++++|-+|..|++++|+ ++.+.+     .++.|+.+.+.+++
T Consensus       363 ~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  363 KIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence            887775 67788888888888865 333322     13456666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=1.2e-08  Score=69.14  Aligned_cols=59  Identities=27%  Similarity=0.409  Sum_probs=50.6

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~   60 (290)
                      ++|++|++++|.|+++|+ .+..+++|++|++++|.+...-|..+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            579999999999999886 48889999999999988765556678889999999998885

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.69  E-value=1.5e-09  Score=106.59  Aligned_cols=157  Identities=24%  Similarity=0.234  Sum_probs=116.2

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n   81 (290)
                      +|+.|++++|.+...|..+..+.+|+.|+++. +.+..+|.++.++.+|++|+|.+|.... |.++..+.+|+.|+++.|
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN  124 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence            38899999999999999999999999999998 5568889889999999999999887433 778889999999999999


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCCCCCCCCCCcccCCCCCCCCcEEEEeCCc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCV  161 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~C~  161 (290)
                      .+..+|..+..++.+..+..++|..++.+++.-  ++.+++..+.....+......... .+.+..|++.  .+++++|.
T Consensus       125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~~~i~~l~~-~ldLr~N~~~--~~dls~~~  199 (1081)
T KOG0618|consen  125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFLIDIYNLTH-QLDLRYNEME--VLDLSNLA  199 (1081)
T ss_pred             ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchhcchhhhhe-eeecccchhh--hhhhhhcc
Confidence            999999999999999999988886666666543  555555554444455444443311 2333333322  45566666


Q ss_pred             Cchh
Q 022917          162 KLHK  165 (290)
Q Consensus       162 ~L~~  165 (290)
                      +|+.
T Consensus       200 ~l~~  203 (1081)
T KOG0618|consen  200 NLEV  203 (1081)
T ss_pred             chhh
Confidence            6643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.62  E-value=1.2e-08  Score=91.63  Aligned_cols=125  Identities=26%  Similarity=0.190  Sum_probs=74.0

Q ss_pred             CceeEEEcccCCCcc-------cCccccCCCCCcEEeccCCCCCCcCccccCCCCC---CcEEeccCCCCCC------cC
Q 022917            2 ELLQEIDLFLSGIKE-------LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKK---LQKLCLSQCRCLI------LS   65 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~-------lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~---L~~L~Ls~~~~l~------~~   65 (290)
                      ++|++|+++++.+..       ++..+..+++|+.|++++|.+.+..+..+..+.+   |+.|++++|....      ..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            457777777765552       3344566777777777777765555554444444   7777777776331      12


Q ss_pred             CCCCC-CCCCEEEeeCccCC-----ccChhhcCCccccEEecccCcCCc----cCCCCC---cccceecccccc
Q 022917           66 GLSSL-SSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIR----SLPELP---FCLNYLNTSDCK  126 (290)
Q Consensus        66 ~l~~l-~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~l~----~lp~~~---~~L~~L~l~~c~  126 (290)
                      .+..+ ++|+.|++++|.++     .++..+..+++|+.|++++|....    .++..+   ++|+.|++++|.
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence            33445 67777777777766     334455566677777777765431    122111   367777777663

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.62  E-value=4.6e-09  Score=91.77  Aligned_cols=109  Identities=25%  Similarity=0.256  Sum_probs=91.5

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      ++.++.|++++|.|..+-. +..|.+|+.|||++|... .+-..-..+.+.++|.|++|..-+..+++.+-+|..||+++
T Consensus       306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS  383 (490)
T ss_pred             ccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence            4689999999999999876 899999999999997654 34334447889999999999866678888999999999999


Q ss_pred             ccCCccC--hhhcCCccccEEecccCcCCccCCC
Q 022917           81 HNFESLP--TGISQLQRLKCLHLINCNMIRSLPE  112 (290)
Q Consensus        81 n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~  112 (290)
                      |+|+.+-  ..|++|+.|+++.+.+|. +..+|+
T Consensus       384 N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd  416 (490)
T KOG1259|consen  384 NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD  416 (490)
T ss_pred             cchhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence            9998554  379999999999999987 555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.53  E-value=2e-08  Score=90.24  Aligned_cols=125  Identities=28%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             CceeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCC------CcCccccCCCCCCcEEeccCCCCCC--cCCCC
Q 022917            2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKL------GFLPESLCNLKKLQKLCLSQCRCLI--LSGLS   68 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l------~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~   68 (290)
                      .+|++|+++++.++.     ++..+...++|+.|+++++...      ..++..+..+++|+.|++++|....  +..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            356777777776632     5555566666777777765543      1223345566677777777776431  12222


Q ss_pred             CC---CCCCEEEeeCccCC-----ccChhhcCC-ccccEEecccCcCCc----cCCCC---Ccccceecccccc
Q 022917           69 SL---SSLKCLELSGHNFE-----SLPTGISQL-QRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCK  126 (290)
Q Consensus        69 ~l---~~L~~L~Ls~n~l~-----~lp~~l~~l-~~L~~L~l~~c~~l~----~lp~~---~~~L~~L~l~~c~  126 (290)
                      .+   ++|+.|++++|.++     .+...+..+ ++|+.|++++|....    .++..   .+.|+.|++++|.
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            22   34777777777665     223344555 677777777766442    11111   2357777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.43  E-value=1.7e-07  Score=87.25  Aligned_cols=103  Identities=35%  Similarity=0.405  Sum_probs=79.4

Q ss_pred             CceeEEEcccCCCcccCccccCCC-CCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCC-CCCCCCEEEee
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIE-GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLS-SLSSLKCLELS   79 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~-~l~~L~~L~Ls   79 (290)
                      +.++.|++.++.++++|+..+.+. +|+.|++++|.. ..+|..++.+++|+.|++++|.....+... .+++|+.|+++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence            457888888888888888777774 888888888554 566667788888888888888865544444 77888888888


Q ss_pred             CccCCccChhhcCCccccEEecccCc
Q 022917           80 GHNFESLPTGISQLQRLKCLHLINCN  105 (290)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~c~  105 (290)
                      +|.+..+|..+..+..|+.|.+++|.
T Consensus       195 ~N~i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         195 GNKISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             CCccccCchhhhhhhhhhhhhhcCCc
Confidence            88888888776666678888887765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.40  E-value=1.5e-08  Score=95.03  Aligned_cols=129  Identities=29%  Similarity=0.477  Sum_probs=90.7

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCcc
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~   82 (290)
                      |+.+.|..|.+..+|..+.++..|++|||+.|. +..+|..++.|+ |+.|.+++|+... |++++.+..|..||.+.|.
T Consensus       100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne  177 (722)
T KOG0532|consen  100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE  177 (722)
T ss_pred             HHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh
Confidence            445566667777777778888888888888754 466777777766 7888888776433 6777777788888888888


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCCCC--cccceeccccccccCCCCCCCC
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELP--FCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      +..+|..++++.+|+.|.+..|. +..+|+.+  -.|..||++ |+.+..+|..+.
T Consensus       178 i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr  231 (722)
T KOG0532|consen  178 IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFS-CNKISYLPVDFR  231 (722)
T ss_pred             hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecc-cCceeecchhhh
Confidence            88888888888888888877755 44455432  246667774 466777776554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.40  E-value=4.5e-08  Score=91.97  Aligned_cols=106  Identities=23%  Similarity=0.275  Sum_probs=62.4

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCcc
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~   82 (290)
                      |+.|-+++|+++.+|+.++.+.+|..||.+.|.. ..+|..++++.+|+.|++..|..+. |+++. .-.|..||++.|+
T Consensus       145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNk  222 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNK  222 (722)
T ss_pred             ceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCc
Confidence            4455555555555555555555555555555332 3445555555555555555554333 44444 3357777777777


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCC
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPE  112 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~  112 (290)
                      +..+|..+.+|+.|++|-|.+|. +++=|.
T Consensus       223 is~iPv~fr~m~~Lq~l~LenNP-LqSPPA  251 (722)
T KOG0532|consen  223 ISYLPVDFRKMRHLQVLQLENNP-LQSPPA  251 (722)
T ss_pred             eeecchhhhhhhhheeeeeccCC-CCCChH
Confidence            77777777777777777777655 555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.38  E-value=2e-07  Score=94.42  Aligned_cols=81  Identities=37%  Similarity=0.456  Sum_probs=66.3

Q ss_pred             CCceeEEEcccC-CCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-c-CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLS-GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-L-SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~-~~l~~l~~L~~L~   77 (290)
                      |+.|++|||++| .+.++|++|+.|-+|++|++++ ..+..+|.++++|++|.+|++..+..+. + .....+++|++|.
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            678999999986 7788999999999999999999 4457899999999999999999877544 2 3334488888888


Q ss_pred             eeCcc
Q 022917           78 LSGHN   82 (290)
Q Consensus        78 Ls~n~   82 (290)
                      +-...
T Consensus       649 l~~s~  653 (889)
T KOG4658|consen  649 LPRSA  653 (889)
T ss_pred             eeccc
Confidence            87665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.36  E-value=2e-07  Score=86.63  Aligned_cols=129  Identities=30%  Similarity=0.318  Sum_probs=96.7

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCC-CCCCCCCEEEeeCc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL-SSLSSLKCLELSGH   81 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l-~~l~~L~~L~Ls~n   81 (290)
                      +|+.|++++|.++.+|..++.+++|+.|++++|.. ..+|...+.+++|+.|++++|....++.. +....|++|.+++|
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence            78999999999999987789999999999999664 56776666889999999999985554443 45556888888888


Q ss_pred             cCCccChhhcCCccccEEecccCcCCc--cCCCCCcccceeccccccccCCCCC
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIR--SLPELPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      .....+..+.++.++..+.+.+|....  .....+++++.|+++++ .+..++.
T Consensus       220 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~  272 (394)
T COG4886         220 SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISS  272 (394)
T ss_pred             cceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccccccc
Confidence            766677778888888888877765433  22234566888888664 4555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.35  E-value=5e-07  Score=61.12  Aligned_cols=56  Identities=36%  Similarity=0.497  Sum_probs=29.8

Q ss_pred             CCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCCccCh-hhcCCccccEEecccCc
Q 022917           50 KLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCN  105 (290)
Q Consensus        50 ~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~  105 (290)
                      +|++|++++|....  ...+..+++|++|++++|.++.+|. .+.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444443222  2344555566666666666665543 45666666666666654

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.28  E-value=5e-08  Score=88.07  Aligned_cols=123  Identities=21%  Similarity=0.252  Sum_probs=99.1

Q ss_pred             ceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEe
Q 022917            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLEL   78 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~L   78 (290)
                      ....++|..|.|+.+|+. |+.+++|+.|||+.|.+...-|..|.++++|..|.+.+++.++   -..|+.+.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456889999999999887 8999999999999999988899999999999999888855454   356888999999999


Q ss_pred             eCccCCcc-ChhhcCCccccEEecccCcCCccCCCC----Ccccceecccccc
Q 022917           79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCK  126 (290)
Q Consensus        79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~  126 (290)
                      .-|.+..+ ...+..+++|..|.+.+|. ++.+++.    ...++.+++..++
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence            98888844 5578889999999998865 6777752    3456666665444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.22  E-value=8.2e-07  Score=90.09  Aligned_cols=106  Identities=27%  Similarity=0.370  Sum_probs=51.1

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCC-CCcCccc-cCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeC
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTK-LGFLPES-LCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSG   80 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~-l~~lp~~-i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~   80 (290)
                      +.+.+-+|.+..++.... .++|+.|-+.+|.. +..++.. |..++.|++|||++|..+.  |..++.+-+|++|++++
T Consensus       526 rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             eEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            344444444444444322 22455555555431 2222222 3345555555555554433  44555555555555555


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLP  111 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp  111 (290)
                      +.+..+|.++++|..|.+|++..+..+..+|
T Consensus       605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             CCccccchHHHHHHhhheecccccccccccc
Confidence            5555555555555555555555544444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1.1e-06  Score=80.46  Aligned_cols=126  Identities=23%  Similarity=0.311  Sum_probs=73.6

Q ss_pred             CCceeEEEcccCCCcc---cCccccCCCCCcEEeccCCCCCCcCcccc-CCCCCCcEEeccCCCCCC-------------
Q 022917            1 MELLQEIDLFLSGIKE---LPSSIEHIEGLKCLRLNSCTKLGFLPESL-CNLKKLQKLCLSQCRCLI-------------   63 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~Ls~~~~l~-------------   63 (290)
                      +++++.|||++|-+..   +-.-...|++|+.|+++.|.+.--..... ..++.|+.|.|++|....             
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            4567777777765554   22224566777777777765532211111 135566666666665221             


Q ss_pred             --------------cCCCCCCCCCCEEEeeCccCCccC--hhhcCCccccEEecccCcCCc-cCCC--------CCcccc
Q 022917           64 --------------LSGLSSLSSLKCLELSGHNFESLP--TGISQLQRLKCLHLINCNMIR-SLPE--------LPFCLN  118 (290)
Q Consensus        64 --------------~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~-~lp~--------~~~~L~  118 (290)
                                    ......+..|+.|||++|++-.++  ..++.++.|+.|+++.|..-. .+|+        ..++|+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~  304 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE  304 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence                          112233567888888888876665  356778888888888765321 1121        246788


Q ss_pred             eecccccc
Q 022917          119 YLNTSDCK  126 (290)
Q Consensus       119 ~L~l~~c~  126 (290)
                      +|++..++
T Consensus       305 ~L~i~~N~  312 (505)
T KOG3207|consen  305 YLNISENN  312 (505)
T ss_pred             eeecccCc
Confidence            88887653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.10  E-value=5.8e-07  Score=84.37  Aligned_cols=103  Identities=29%  Similarity=0.349  Sum_probs=74.6

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++|+.|++.+|.|+++...+..+++|++|++++|.+.. +. .+..++.|+.|++++|....+..+..+.+|+.+++++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSY  171 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcchhccCCccchhhhcccCCc
Confidence            356778888888887776656777888888888865533 32 3556777888888888766677777778888888888


Q ss_pred             ccCCccChh-hcCCccccEEecccCc
Q 022917           81 HNFESLPTG-ISQLQRLKCLHLINCN  105 (290)
Q Consensus        81 n~l~~lp~~-l~~l~~L~~L~l~~c~  105 (290)
                      |.++.+... +..+.+|+.+.+.+|.
T Consensus       172 n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  172 NRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             chhhhhhhhhhhhccchHHHhccCCc
Confidence            887766643 4677778888877765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=3.2e-06  Score=53.22  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCC
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKL   38 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l   38 (290)
                      ++|++|++++|+|+++|+.+++|++|+.|++++|.+.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            5789999999999999888899999999999997653

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=3e-06  Score=53.40  Aligned_cols=40  Identities=33%  Similarity=0.511  Sum_probs=30.7

Q ss_pred             CCCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCC
Q 022917           71 SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP  111 (290)
Q Consensus        71 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp  111 (290)
                      ++|++|++++|+|+.+|..+++|++|+.|++++|+ +..++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            46888899999999888778899999999998876 44444

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.06  E-value=1.4e-06  Score=81.85  Aligned_cols=122  Identities=27%  Similarity=0.314  Sum_probs=93.4

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ..++.+++..|.|+.+-..++.+++|+.|++.+|.+ ..+...+..+++|++|++++|....+..+..++.|+.|++++|
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN  150 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence            346667788888887555578899999999999665 4444336789999999999999888888999999999999999


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCC---CCCcccceeccccc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLP---ELPFCLNYLNTSDC  125 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp---~~~~~L~~L~l~~c  125 (290)
                      .++.+. .+..++.|+.+++++|.....=+   +...+++.+.+.++
T Consensus       151 ~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  151 LISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             cchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence            998887 56668999999999977443333   33455666666553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.01  E-value=1.4e-07  Score=90.90  Aligned_cols=119  Identities=24%  Similarity=0.202  Sum_probs=76.2

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCC-CCCCEEEeeCcc
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSL-SSLKCLELSGHN   82 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l-~~L~~L~Ls~n~   82 (290)
                      |...+.++|.++.+..++.-++.|+.|||+.|++...-  .+..++.|++|||++|....++.++.- ..|+.|.+++|.
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~  243 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA  243 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence            44556667777777777777777888888877765432  566777788888877764444333321 137777777777


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCCC-----Ccccceecccccc
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCK  126 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~~L~~L~l~~c~  126 (290)
                      ++++- ++.+|.+|+.||+++|- +....++     +..|+.|.+.|++
T Consensus       244 l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  244 LTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence            77665 57777777777777754 3222221     3456666666643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.6e-06  Score=79.39  Aligned_cols=76  Identities=24%  Similarity=0.273  Sum_probs=55.7

Q ss_pred             CCCCCcEEeccCCCCCCc---CCCCCCCCCCEEEeeCccCC--ccChh-----hcCCccccEEecccCcCCccCCC----
Q 022917           47 NLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLELSGHNFE--SLPTG-----ISQLQRLKCLHLINCNMIRSLPE----  112 (290)
Q Consensus        47 ~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~Ls~n~l~--~lp~~-----l~~l~~L~~L~l~~c~~l~~lp~----  112 (290)
                      .+..|+.|+|++|..+..   ...+.++.|+.|+++.+.+.  .+|+.     ...+++|++|++..|+. ..++.    
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l  322 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHL  322 (505)
T ss_pred             hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc-ccccccchh
Confidence            466789999999987763   45778999999999999987  45654     35678999999999874 33332    


Q ss_pred             -CCcccceeccc
Q 022917          113 -LPFCLNYLNTS  123 (290)
Q Consensus       113 -~~~~L~~L~l~  123 (290)
                       ..++|+.|.+.
T Consensus       323 ~~l~nlk~l~~~  334 (505)
T KOG3207|consen  323 RTLENLKHLRIT  334 (505)
T ss_pred             hccchhhhhhcc
Confidence             23566666553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.91  E-value=1.9e-05  Score=65.73  Aligned_cols=99  Identities=25%  Similarity=0.306  Sum_probs=51.2

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEeeC
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLELSG   80 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~Ls~   80 (290)
                      ...+||++|.+..++. +..++.|.+|.+.+|.+...-|.--..+++|+.|.+.+|+.-+   +..+..++.|++|.+-+
T Consensus        44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            3445566655555443 4555666666666655444333322334556666666665333   33344555666666666


Q ss_pred             ccCCccCh----hhcCCccccEEeccc
Q 022917           81 HNFESLPT----GISQLQRLKCLHLIN  103 (290)
Q Consensus        81 n~l~~lp~----~l~~l~~L~~L~l~~  103 (290)
                      |.++..+.    -+..+++|+.||.+.
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhh
Confidence            65553332    244555566655543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.84  E-value=4.7e-07  Score=87.47  Aligned_cols=102  Identities=24%  Similarity=0.268  Sum_probs=82.6

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccc-cCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPES-LCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +.|+.|+|++|+++++. .+..+++|++|||+.|.+ ..+|.- ...++ |+.|++++|...+..++.++.+|+.||+++
T Consensus       187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHhhhhccchhhhhhhH-HHHhcccccccccccchh-ccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhH
Confidence            56889999999999987 588999999999999654 566631 22333 999999999977789999999999999999


Q ss_pred             ccCCccCh--hhcCCccccEEecccCcC
Q 022917           81 HNFESLPT--GISQLQRLKCLHLINCNM  106 (290)
Q Consensus        81 n~l~~lp~--~l~~l~~L~~L~l~~c~~  106 (290)
                      |-+....+  -+..|..|+.|+|.||..
T Consensus       264 Nll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  264 NLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            98764322  356778899999999863

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1.8e-06  Score=75.71  Aligned_cols=125  Identities=23%  Similarity=0.285  Sum_probs=62.7

Q ss_pred             eeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCc--cccCCCCCCcEEeccCCCCCCcC---CCCCC-CCCCEE
Q 022917            4 LQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLP--ESLCNLKKLQKLCLSQCRCLILS---GLSSL-SSLKCL   76 (290)
Q Consensus         4 L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~~~~l~~~---~l~~l-~~L~~L   76 (290)
                      |+.|.|.|+.+.+ +-..|..-.+|+.|++++|+-.....  --+.+++.|+.|++++|...++.   .+.+. .+|+.|
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            4444444444443 33334444555555555544332211  11334555555555555433210   01111 356667


Q ss_pred             EeeCcc--CC--ccChhhcCCccccEEecccCcCCccCC--C--CCcccceecccccccc
Q 022917           77 ELSGHN--FE--SLPTGISQLQRLKCLHLINCNMIRSLP--E--LPFCLNYLNTSDCKRL  128 (290)
Q Consensus        77 ~Ls~n~--l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp--~--~~~~L~~L~l~~c~~l  128 (290)
                      +|+|+.  +.  .+..-..++++|.+|||++|..++.--  +  -++.|++|.++.|-.+
T Consensus       292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence            777664  21  333334567888888888877665300  1  1356888888887643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00014  Score=67.40  Aligned_cols=91  Identities=20%  Similarity=0.360  Sum_probs=61.8

Q ss_pred             ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCc-cCCccChhhcCCcccc
Q 022917           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGH-NFESLPTGISQLQRLK   97 (290)
Q Consensus        21 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~   97 (290)
                      +..+.+++.|++++| .+..+|.   -..+|+.|.+++|..++  +..+  ..+|+.|++++| .+..+|..      |+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc
Confidence            445789999999998 5677772   24479999999988765  2222  358999999998 67788854      55


Q ss_pred             EEecccCcCCccCCCCCcccceecccc
Q 022917           98 CLHLINCNMIRSLPELPFCLNYLNTSD  124 (290)
Q Consensus        98 ~L~l~~c~~l~~lp~~~~~L~~L~l~~  124 (290)
                      .|++.+ .....++.+|++|+.|.+.+
T Consensus       116 ~L~L~~-n~~~~L~~LPssLk~L~I~~  141 (426)
T PRK15386        116 SLEIKG-SATDSIKNVPNGLTSLSINS  141 (426)
T ss_pred             eEEeCC-CCCcccccCcchHhheeccc
Confidence            555554 22344555556666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.58  E-value=2.4e-05  Score=77.64  Aligned_cols=122  Identities=22%  Similarity=0.263  Sum_probs=72.0

Q ss_pred             ceeEEEcccCC-Ccc-cCcccc-CCCCCcEEeccCCCCCCc-CccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEe
Q 022917            3 LLQEIDLFLSG-IKE-LPSSIE-HIEGLKCLRLNSCTKLGF-LPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLEL   78 (290)
Q Consensus         3 ~L~~L~L~~~~-l~~-lp~~i~-~L~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~L   78 (290)
                      +|+.|+++|.. +.. -|..++ .||+|+.|.+.+-.+... .-.-..++++|..||+|+++.....+++++++|+.|.+
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m  202 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM  202 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence            57778887742 222 333343 357888888777433221 12223467788888888877666667777777777777


Q ss_pred             eCccCCccC--hhhcCCccccEEecccCcCCccC---------CCCCcccceecccc
Q 022917           79 SGHNFESLP--TGISQLQRLKCLHLINCNMIRSL---------PELPFCLNYLNTSD  124 (290)
Q Consensus        79 s~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l---------p~~~~~L~~L~l~~  124 (290)
                      .+=.++.-.  ..+.+|++|+.||++.-.....-         +..++.|+.||.++
T Consensus       203 rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  203 RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            666665332  24567777777777753322111         12245666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.52  E-value=3.2e-05  Score=70.28  Aligned_cols=85  Identities=21%  Similarity=0.275  Sum_probs=69.4

Q ss_pred             ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCCc-cChhhcCCcccc
Q 022917           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFES-LPTGISQLQRLK   97 (290)
Q Consensus        21 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~   97 (290)
                      |..|++|+.|+|++|.+.+.-+.+|.++.+++.|.|..|+.-.  -..|.++..|++|+|.+|+|+. -|..+..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            7788999999999988888888888889999999999887333  2447788889999999999884 477788888899


Q ss_pred             EEecccCc
Q 022917           98 CLHLINCN  105 (290)
Q Consensus        98 ~L~l~~c~  105 (290)
                      +|.+-.|.
T Consensus       350 ~l~l~~Np  357 (498)
T KOG4237|consen  350 TLNLLSNP  357 (498)
T ss_pred             eeehccCc
Confidence            99887654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.51  E-value=7e-06  Score=64.31  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             eEEEcccCCCcccCcc---ccCCCCCcEEeccCCCCCCcCccccCC-CCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917            5 QEIDLFLSGIKELPSS---IEHIEGLKCLRLNSCTKLGFLPESLCN-LKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS   79 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~---i~~L~~L~~L~L~~~~~l~~lp~~i~~-l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls   79 (290)
                      ..++|+.+.+-.+++.   +.....|...++++|.+ ...|+.+.. .+.+.+|++++|.... |.++..++.|+.|+++
T Consensus        30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            3456666655444433   33445555567777544 455555543 3466777777776444 5557777777777777


Q ss_pred             CccCCccChhhcCCccccEEecccCcCCccCC
Q 022917           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLP  111 (290)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp  111 (290)
                      .|.+...|.-+..|.+|-.|+..+|. ...||
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid  139 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENA-RAEID  139 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCc-cccCc
Confidence            77777777777777777777776644 44444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=3e-05  Score=76.99  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=84.1

Q ss_pred             CCceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCE
Q 022917            1 MELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKC   75 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~   75 (290)
                      ||+|+.|.+.|-.+..  +-.-..++++|..||+++++. ..+ .+++.|++|+.|.+.+=....   ..++.+|++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            5889999999865533  444466789999999999554 444 678889999999887644222   346778999999


Q ss_pred             EEeeCccCCccCh-------hhcCCccccEEecccCcCCccCCC----CCcccceeccccccc
Q 022917           76 LELSGHNFESLPT-------GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKR  127 (290)
Q Consensus        76 L~Ls~n~l~~lp~-------~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~  127 (290)
                      ||+|......-+.       .-..|+.|+.||.++...-+.+-+    .-++|+.+.+.+|..
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~  287 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLA  287 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhc
Confidence            9999887554332       224588999999987554332222    124555555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.46  E-value=3.7e-05  Score=68.76  Aligned_cols=124  Identities=21%  Similarity=0.227  Sum_probs=72.8

Q ss_pred             CceeEEEcccCCCcc--cC---ccccCCCCCcEEeccCCCCCCcC-------------ccccCCCCCCcEEeccCCCCCC
Q 022917            2 ELLQEIDLFLSGIKE--LP---SSIEHIEGLKCLRLNSCTKLGFL-------------PESLCNLKKLQKLCLSQCRCLI   63 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp---~~i~~L~~L~~L~L~~~~~l~~l-------------p~~i~~l~~L~~L~Ls~~~~l~   63 (290)
                      +.|++|+||.|.+..  ++   .-+..+..|++|.|.+|.+-..-             ..-+..-+.|+++....|+.-.
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            357777777776643  22   22455677777777776542211             1123345667777777776222


Q ss_pred             ------cCCCCCCCCCCEEEeeCccCC-----ccChhhcCCccccEEecccCcCCc--------cCCCCCcccceecccc
Q 022917           64 ------LSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIR--------SLPELPFCLNYLNTSD  124 (290)
Q Consensus        64 ------~~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~l~--------~lp~~~~~L~~L~l~~  124 (290)
                            -..+...+.|+.+.+..|.|.     .+-..+.++++|+.|+|++|....        .+|.+ ++|+.|++++
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~El~l~d  250 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRELNLGD  250 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chheeecccc
Confidence                  123445567777777777754     223456777888888888765431        23333 3677777777


Q ss_pred             cc
Q 022917          125 CK  126 (290)
Q Consensus       125 c~  126 (290)
                      |.
T Consensus       251 cl  252 (382)
T KOG1909|consen  251 CL  252 (382)
T ss_pred             cc
Confidence            73

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=0.0002  Score=61.80  Aligned_cols=105  Identities=28%  Similarity=0.359  Sum_probs=68.6

Q ss_pred             cCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----cCCCCCCCCCCEEEeeCccCC---ccChhhcCCc
Q 022917           22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----LSGLSSLSSLKCLELSGHNFE---SLPTGISQLQ   94 (290)
Q Consensus        22 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~   94 (290)
                      ..+..|+.|.+.++..+..  ..+-.|++|+.|.++.|..-.    ..-...+++|++|++++|++.   +++ .+..+.
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence            3455666777766554322  123478899999999984111    122334589999999999976   443 467788


Q ss_pred             cccEEecccCcCCccCC-------CCCcccceeccccccccCC
Q 022917           95 RLKCLHLINCNMIRSLP-------ELPFCLNYLNTSDCKRLQS  130 (290)
Q Consensus        95 ~L~~L~l~~c~~l~~lp-------~~~~~L~~L~l~~c~~l~~  130 (290)
                      +|..|++.+|.-.+ +-       .++++|+.|+-.++..-+.
T Consensus       117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~Ea  158 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEEA  158 (260)
T ss_pred             chhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCccc
Confidence            89999999987555 22       2357788887666554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.97  E-value=4.5e-05  Score=59.84  Aligned_cols=85  Identities=20%  Similarity=0.340  Sum_probs=52.3

Q ss_pred             CCcEEeccCCCCCCcCcc---ccCCCCCCcEEeccCCCCCC-cCCCC-CCCCCCEEEeeCccCCccChhhcCCccccEEe
Q 022917           26 GLKCLRLNSCTKLGFLPE---SLCNLKKLQKLCLSQCRCLI-LSGLS-SLSSLKCLELSGHNFESLPTGISQLQRLKCLH  100 (290)
Q Consensus        26 ~L~~L~L~~~~~l~~lp~---~i~~l~~L~~L~Ls~~~~l~-~~~l~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  100 (290)
                      .+..++|++|.+ ..+++   .+.....|...+|++|..-. ++.+. .++.+++|++++|.+..+|..+..++.|+.|+
T Consensus        28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             Hhhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            455667777654 22333   33345556666777776222 22222 34467778888888888888888888888888


Q ss_pred             cccCcCCccCCC
Q 022917          101 LINCNMIRSLPE  112 (290)
Q Consensus       101 l~~c~~l~~lp~  112 (290)
                      ++.|. +...|.
T Consensus       107 l~~N~-l~~~p~  117 (177)
T KOG4579|consen  107 LRFNP-LNAEPR  117 (177)
T ss_pred             cccCc-cccchH
Confidence            87765 444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=5.1e-05  Score=66.17  Aligned_cols=96  Identities=24%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             CCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccCh--hhcCCccccEEec
Q 022917           24 IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPT--GISQLQRLKCLHL  101 (290)
Q Consensus        24 L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~l  101 (290)
                      +.+.+.|++.||.+...  .....|+.|+.|.||-|++.+...+..+++|++|+|..|.|.++-+  -+.++++|+.|+|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            55667777877765322  1234688888888888887777788888889999999888876643  5678889999999


Q ss_pred             ccCcCCccCCCC--------Ccccceec
Q 022917          102 INCNMIRSLPEL--------PFCLNYLN  121 (290)
Q Consensus       102 ~~c~~l~~lp~~--------~~~L~~L~  121 (290)
                      ..|.-.+.-+.-        +++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            887765554431        35666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.68  E-value=0.00045  Score=61.93  Aligned_cols=125  Identities=19%  Similarity=0.148  Sum_probs=80.8

Q ss_pred             CceeEEEcccCCCccc-----CccccCCCCCcEEeccCCCCCC----cCccccCCCCCCcEEeccCCCCCC------cCC
Q 022917            2 ELLQEIDLFLSGIKEL-----PSSIEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCLI------LSG   66 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-----p~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~------~~~   66 (290)
                      +.||++....|.+..-     -..+...+.|+.+.++.|.+-.    .+-..+..+++|+.|||.+|....      -..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            4688888888877653     3336667788888888765421    122345678888888888886333      245


Q ss_pred             CCCCCCCCEEEeeCccCCc-----cChhh-cCCccccEEecccCcCCccCC-------CCCcccceecccccc
Q 022917           67 LSSLSSLKCLELSGHNFES-----LPTGI-SQLQRLKCLHLINCNMIRSLP-------ELPFCLNYLNTSDCK  126 (290)
Q Consensus        67 l~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~l~~c~~l~~lp-------~~~~~L~~L~l~~c~  126 (290)
                      +..+++|+.|++++|.++.     +-..+ ...++|+.|.+.+|.....--       ...+.|+.|++++|.
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            6677788888888888762     21222 235788888888876543110       014668888888764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.66  E-value=0.0014  Score=56.58  Aligned_cols=89  Identities=24%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             CccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc--cCC-ccChhhcCCccccEEecccCcC--CccCCCC--
Q 022917           41 LPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH--NFE-SLPTGISQLQRLKCLHLINCNM--IRSLPEL--  113 (290)
Q Consensus        41 lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n--~l~-~lp~~l~~l~~L~~L~l~~c~~--l~~lp~~--  113 (290)
                      +....-.+..|+.|.+.++...+...+..+++|+.|.++.|  .+. .++.....+++|++|++++|+.  +++++..  
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            33333456778888888888777888999999999999999  444 6776677789999999999873  2344432  


Q ss_pred             CcccceeccccccccC
Q 022917          114 PFCLNYLNTSDCKRLQ  129 (290)
Q Consensus       114 ~~~L~~L~l~~c~~l~  129 (290)
                      ..+|..|++.+|....
T Consensus       115 l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTN  130 (260)
T ss_pred             hcchhhhhcccCCccc
Confidence            3567777777775433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.60  E-value=0.00073  Score=35.69  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=14.8

Q ss_pred             ceeEEEcccCCCcccCccccC
Q 022917            3 LLQEIDLFLSGIKELPSSIEH   23 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~   23 (290)
                      +|++|+|++|.|+.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            477777777777777776554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.46  E-value=0.0012  Score=34.77  Aligned_cols=21  Identities=43%  Similarity=0.800  Sum_probs=16.4

Q ss_pred             CCCEEEeeCccCCccChhhcC
Q 022917           72 SLKCLELSGHNFESLPTGISQ   92 (290)
Q Consensus        72 ~L~~L~Ls~n~l~~lp~~l~~   92 (290)
                      +|++|++++|+++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            478888888888888877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.00044  Score=61.03  Aligned_cols=123  Identities=26%  Similarity=0.303  Sum_probs=90.2

Q ss_pred             CceeEEEccc-CCCcc--cCccccCCCCCcEEeccCCCCCCcCccc-cCC-CCCCcEEeccCCCC-CCcCC----CCCCC
Q 022917            2 ELLQEIDLFL-SGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPES-LCN-LKKLQKLCLSQCRC-LILSG----LSSLS   71 (290)
Q Consensus         2 ~~L~~L~L~~-~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~-l~~L~~L~Ls~~~~-l~~~~----l~~l~   71 (290)
                      .+|+.|+|+. +++++  +.--+.+++.|..|+++.|......-.. +.. -.+|..|+++|+.. +....    ...++
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp  313 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP  313 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence            4789999999 58887  3334788999999999999775443211 111 34789999999862 22111    34688


Q ss_pred             CCCEEEeeCcc-CC-ccChhhcCCccccEEecccCcCCccCCC------CCcccceecccccc
Q 022917           72 SLKCLELSGHN-FE-SLPTGISQLQRLKCLHLINCNMIRSLPE------LPFCLNYLNTSDCK  126 (290)
Q Consensus        72 ~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~------~~~~L~~L~l~~c~  126 (290)
                      +|.+|||++|. ++ ..-..+.+++.|++|.++.|-.+  +|+      ..++|.+|++.||-
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            99999999997 55 55567889999999999999743  333      24789999999984

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.26  E-value=0.0076  Score=50.45  Aligned_cols=77  Identities=26%  Similarity=0.323  Sum_probs=55.0

Q ss_pred             CCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccChhhcC-CccccEEecccCcCCccCCCC-----Ccccceec
Q 022917           48 LKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQ-LQRLKCLHLINCNMIRSLPEL-----PFCLNYLN  121 (290)
Q Consensus        48 l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~-l~~L~~L~l~~c~~l~~lp~~-----~~~L~~L~  121 (290)
                      +.+...+||++|.......+..++.|.+|.+++|+|+.+-..+.. +++|..|.+.+|+ ++.+.++     .+.|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence            446778888888877778888888899999999988877555544 5678888888865 5444432     24566666


Q ss_pred             cccc
Q 022917          122 TSDC  125 (290)
Q Consensus       122 l~~c  125 (290)
                      +.++
T Consensus       120 ll~N  123 (233)
T KOG1644|consen  120 LLGN  123 (233)
T ss_pred             ecCC
Confidence            5554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.00043  Score=60.50  Aligned_cols=96  Identities=23%  Similarity=0.257  Sum_probs=71.4

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~L   78 (290)
                      .+.++|++-|+.|.++.- ...++.|+.|.|+-|++..--|  +..+++|+.|.|..|.+-.+   .-+.++++|+.|.|
T Consensus        19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            456788999999988754 5678999999999977654433  66889999999999885543   34567889999999


Q ss_pred             eCccCC-ccCh-----hhcCCccccEEe
Q 022917           79 SGHNFE-SLPT-----GISQLQRLKCLH  100 (290)
Q Consensus        79 s~n~l~-~lp~-----~l~~l~~L~~L~  100 (290)
                      ..|... .-+.     -+.-|++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            998743 2222     356677777775

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.55  E-value=0.022  Score=49.93  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=21.5

Q ss_pred             CCCCCcEEeccCCCCCCcCccc----cCCCCCCcEEeccCCC
Q 022917           23 HIEGLKCLRLNSCTKLGFLPES----LCNLKKLQKLCLSQCR   60 (290)
Q Consensus        23 ~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~Ls~~~   60 (290)
                      .+++|+..+||+|.+....|+.    |..-+.|.+|.+++|.
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            4566666666666555444433    3445556666666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.41  E-value=0.01  Score=51.94  Aligned_cols=125  Identities=22%  Similarity=0.205  Sum_probs=84.0

Q ss_pred             CCceeEEEcccCCCcc-cCcc----ccCCCCCcEEeccCCCCCCcCccc-------------cCCCCCCcEEeccCCCCC
Q 022917            1 MELLQEIDLFLSGIKE-LPSS----IEHIEGLKCLRLNSCTKLGFLPES-------------LCNLKKLQKLCLSQCRCL   62 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~----i~~L~~L~~L~L~~~~~l~~lp~~-------------i~~l~~L~~L~Ls~~~~l   62 (290)
                      ++.|+..+||.|.+.. .|+.    |..-+.|.+|.+++|..-..-...             ..+-+.|++.....|+..
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            5789999999998865 4443    566789999999997653221111             234578999998888733


Q ss_pred             C------cCCCCCCCCCCEEEeeCccCC--cc----ChhhcCCccccEEecccCcCCc--------cCCCCCcccceecc
Q 022917           63 I------LSGLSSLSSLKCLELSGHNFE--SL----PTGISQLQRLKCLHLINCNMIR--------SLPELPFCLNYLNT  122 (290)
Q Consensus        63 ~------~~~l~~l~~L~~L~Ls~n~l~--~l----p~~l~~l~~L~~L~l~~c~~l~--------~lp~~~~~L~~L~l  122 (290)
                      .      ...+..-..|+.+.+..|.|.  .+    -..+.++.+|+.|++++|....        .+|+++ .|+.|.+
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~l  249 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRL  249 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccc
Confidence            3      122333467888889888876  11    1245677889999999876432        233333 3788888


Q ss_pred             cccc
Q 022917          123 SDCK  126 (290)
Q Consensus       123 ~~c~  126 (290)
                      .+|-
T Consensus       250 nDCl  253 (388)
T COG5238         250 NDCL  253 (388)
T ss_pred             cchh
Confidence            8873

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.33  E-value=0.0093  Score=29.30  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=8.6

Q ss_pred             CceeEEEcccCCCcccC
Q 022917            2 ELLQEIDLFLSGIKELP   18 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp   18 (290)
                      ++|+.|++++|.++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35677777777766655

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.29  E-value=0.012  Score=28.89  Aligned_cols=16  Identities=44%  Similarity=0.783  Sum_probs=7.3

Q ss_pred             CCCEEEeeCccCCccC
Q 022917           72 SLKCLELSGHNFESLP   87 (290)
Q Consensus        72 ~L~~L~Ls~n~l~~lp   87 (290)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666665554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.74  E-value=0.15  Score=39.03  Aligned_cols=79  Identities=15%  Similarity=0.227  Sum_probs=31.7

Q ss_pred             ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCCccCh-hhcCCccc
Q 022917           21 IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFESLPT-GISQLQRL   96 (290)
Q Consensus        21 i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L   96 (290)
                      +...++|+.+.+.. .. ..++ ..+.++++|+.+.+.++ ...  -..+..+.+|+.+.+.+ .+..++. .+..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TI-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-Ce-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            44455555555553 22 2222 23445555666665543 111  23345555566666644 3333332 34445666


Q ss_pred             cEEeccc
Q 022917           97 KCLHLIN  103 (290)
Q Consensus        97 ~~L~l~~  103 (290)
                      +.+.+..
T Consensus        84 ~~i~~~~   90 (129)
T PF13306_consen   84 KNIDIPS   90 (129)
T ss_dssp             CEEEETT
T ss_pred             cccccCc
Confidence            6666643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.67  E-value=0.0054  Score=57.94  Aligned_cols=106  Identities=26%  Similarity=0.342  Sum_probs=54.4

Q ss_pred             CceeEEEcccC-CCcc--cCccccCCCCCcEEeccCC-CCCCcCc----cccCCCCCCcEEeccCCCCCCcCC---CC-C
Q 022917            2 ELLQEIDLFLS-GIKE--LPSSIEHIEGLKCLRLNSC-TKLGFLP----ESLCNLKKLQKLCLSQCRCLILSG---LS-S   69 (290)
Q Consensus         2 ~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~-~~l~~lp----~~i~~l~~L~~L~Ls~~~~l~~~~---l~-~   69 (290)
                      ++|+.|.+.++ .++.  +-......+.|+.|++++| ......+    .....+.+|+.|+++++..++...   +. .
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            34555555553 4443  2233455666777776652 2222111    122334666677776666433111   11 2


Q ss_pred             CCCCCEEEeeCcc-CC--ccChhhcCCccccEEecccCcCC
Q 022917           70 LSSLKCLELSGHN-FE--SLPTGISQLQRLKCLHLINCNMI  107 (290)
Q Consensus        70 l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~l~~c~~l  107 (290)
                      +++|+.|.+.++. ++  .+-.....++.|++|++++|..+
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            5567777766565 44  33334455666777777766654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.67  E-value=0.036  Score=49.27  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             ceeEEEcccCCCcc---cCccccCCCCCcEEeccCCCC
Q 022917            3 LLQEIDLFLSGIKE---LPSSIEHIEGLKCLRLNSCTK   37 (290)
Q Consensus         3 ~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~~   37 (290)
                      .+++|||.+|.|++   +-.-+.+++.|+.|+++.|.+
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L  109 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL  109 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence            34566666666654   323345566666666666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.27  E-value=0.014  Score=51.85  Aligned_cols=82  Identities=22%  Similarity=0.264  Sum_probs=59.6

Q ss_pred             CCCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCC-cCCC-CCCCCCCEEEeeCccCC--ccChhhcCCcccc
Q 022917           24 IEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLI-LSGL-SSLSSLKCLELSGHNFE--SLPTGISQLQRLK   97 (290)
Q Consensus        24 L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l-~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~   97 (290)
                      .+.++.|||.+|.+..  .+...+.+|+.|++|+++.|+.-. +..+ ..+.+|+.|-|.|..+.  ..-..+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4678888888876532  223345689999999999987433 3333 25568999999998854  6666788888889


Q ss_pred             EEecccCc
Q 022917           98 CLHLINCN  105 (290)
Q Consensus        98 ~L~l~~c~  105 (290)
                      .|.++.|+
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            88888874

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.71  E-value=0.041  Score=29.98  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=16.5

Q ss_pred             CCceeEEEcccCCCcccCccc
Q 022917            1 MELLQEIDLFLSGIKELPSSI   21 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i   21 (290)
                      |++|+.|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            567888888888888887753

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.71  E-value=0.041  Score=29.98  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=16.5

Q ss_pred             CCceeEEEcccCCCcccCccc
Q 022917            1 MELLQEIDLFLSGIKELPSSI   21 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i   21 (290)
                      |++|+.|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            567888888888888887753

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.19  E-value=0.079  Score=28.81  Aligned_cols=21  Identities=43%  Similarity=0.732  Sum_probs=16.4

Q ss_pred             CCCCCEEEeeCccCCccChhh
Q 022917           70 LSSLKCLELSGHNFESLPTGI   90 (290)
Q Consensus        70 l~~L~~L~Ls~n~l~~lp~~l   90 (290)
                      +++|+.|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888888654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.19  E-value=0.079  Score=28.81  Aligned_cols=21  Identities=43%  Similarity=0.732  Sum_probs=16.4

Q ss_pred             CCCCCEEEeeCccCCccChhh
Q 022917           70 LSSLKCLELSGHNFESLPTGI   90 (290)
Q Consensus        70 l~~L~~L~Ls~n~l~~lp~~l   90 (290)
                      +++|+.|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888888654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.35  E-value=0.045  Score=45.89  Aligned_cols=78  Identities=24%  Similarity=0.347  Sum_probs=39.4

Q ss_pred             CCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCC-CCCCCCEEEeeCcc-CC-ccChhhcCCccccEE
Q 022917           26 GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLS-SLSSLKCLELSGHN-FE-SLPTGISQLQRLKCL   99 (290)
Q Consensus        26 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~-~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L   99 (290)
                      .++.++-+++.+...--+.+.++++++.|.+.+|..+.   ++.++ -.++|+.|++++|. |+ .--..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34555655544433333345556666666666665444   12222 23456666666664 55 222345555555555


Q ss_pred             eccc
Q 022917          100 HLIN  103 (290)
Q Consensus       100 ~l~~  103 (290)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.17  E-value=0.73  Score=35.08  Aligned_cols=97  Identities=16%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~L   78 (290)
                      ++|+.+.+.. .++.++.. +..+++|+.+.+.++  +..++ ..+.++++|+.+.+.++- .+....+..+++|+.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccccccccccccccccccccccc
Confidence            4788888875 67777665 778889999999873  34444 456677789999997532 122455777899999999


Q ss_pred             eCccCCccCh-hhcCCccccEEeccc
Q 022917           79 SGHNFESLPT-GISQLQRLKCLHLIN  103 (290)
Q Consensus        79 s~n~l~~lp~-~l~~l~~L~~L~l~~  103 (290)
                      ..+ +..++. .+.+. .|+.+.+..
T Consensus        89 ~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   89 PSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             Ccc-ccEEchhhhcCC-CceEEEECC
Confidence            775 665543 45665 888887764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.93  E-value=0.11  Score=48.24  Aligned_cols=84  Identities=26%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             CCCCcEEeccCCCCCCcCcc--ccCCCCCCcEEeccCCCCCCcCCC---C-CCCCCCEEEeeCccCC---ccChhhcCCc
Q 022917           24 IEGLKCLRLNSCTKLGFLPE--SLCNLKKLQKLCLSQCRCLILSGL---S-SLSSLKCLELSGHNFE---SLPTGISQLQ   94 (290)
Q Consensus        24 L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~l~~~~l---~-~l~~L~~L~Ls~n~l~---~lp~~l~~l~   94 (290)
                      +..|+.|+.++|...+..+-  -..+..+|++|-+++|+.++-..+   + +...|+.+++.++...   ++-.--.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            45666666666655443321  112345666666666664442111   1 3345666666655421   2322233455


Q ss_pred             cccEEecccCcCC
Q 022917           95 RLKCLHLINCNMI  107 (290)
Q Consensus        95 ~L~~L~l~~c~~l  107 (290)
                      .|+.|.+++|..+
T Consensus       373 ~lr~lslshce~i  385 (483)
T KOG4341|consen  373 RLRVLSLSHCELI  385 (483)
T ss_pred             hhccCChhhhhhh
Confidence            5666666555433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.80  E-value=0.09  Score=49.60  Aligned_cols=106  Identities=33%  Similarity=0.385  Sum_probs=74.4

Q ss_pred             CCCCCcEEeccCCCCCCc--CccccCCCCCCcEEeccCC-CCCC------cCCCCCCCCCCEEEeeCcc-CC--ccChhh
Q 022917           23 HIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQC-RCLI------LSGLSSLSSLKCLELSGHN-FE--SLPTGI   90 (290)
Q Consensus        23 ~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~-~~l~------~~~l~~l~~L~~L~Ls~n~-l~--~lp~~l   90 (290)
                      ..+.|+.|.+.+|..+..  +-......+.|+.|++++| ....      ......+.+|+.|+++++. ++  .+..-.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            478899999999877765  3345567899999999984 2222      2234456889999999998 66  233222


Q ss_pred             cCCccccEEecccCcCCc-----cCCCCCcccceecccccccc
Q 022917           91 SQLQRLKCLHLINCNMIR-----SLPELPFCLNYLNTSDCKRL  128 (290)
Q Consensus        91 ~~l~~L~~L~l~~c~~l~-----~lp~~~~~L~~L~l~~c~~l  128 (290)
                      ..+++|+.|.+.+|..+.     .+-...+.|++|++++|..+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            347899999988887532     12223467999999988776

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.19  E-value=0.044  Score=45.92  Aligned_cols=78  Identities=26%  Similarity=0.272  Sum_probs=53.5

Q ss_pred             eeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCc-cccC-CCCCCcEEeccCCCCCCc---CCCCCCCCCCEEE
Q 022917            4 LQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLP-ESLC-NLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLE   77 (290)
Q Consensus         4 L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~-~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~   77 (290)
                      ++.++-+++.|...- +.+.+++.++.|.+.+|...+..- +.++ -.++|+.|+|++|..++-   ..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            566677776664411 227788999999999998765421 1122 467999999999998773   3455677888887


Q ss_pred             eeCc
Q 022917           78 LSGH   81 (290)
Q Consensus        78 Ls~n   81 (290)
                      +.+-
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            7653

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.60  E-value=0.57  Score=25.67  Aligned_cols=18  Identities=44%  Similarity=0.623  Sum_probs=13.1

Q ss_pred             CCCCEEEeeCccCCccCh
Q 022917           71 SSLKCLELSGHNFESLPT   88 (290)
Q Consensus        71 ~~L~~L~Ls~n~l~~lp~   88 (290)
                      .+|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357777777777777774

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.63  E-value=0.92  Score=24.85  Aligned_cols=17  Identities=35%  Similarity=0.532  Sum_probs=11.8

Q ss_pred             CCceeEEEcccCCCccc
Q 022917            1 MELLQEIDLFLSGIKEL   17 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~l   17 (290)
                      +++|+.|+|+.|.|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            46777777777777554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 4e-20
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCN---------LKKLQKL 54
           L+ + L  + ++ LP+SI  +  L+ L + +C +L  LPE L +         L  LQ L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 55  CLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE- 112
            L       L + +++L +LK L++      +L   I  L +L+ L L  C  +R+ P  
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 113 ---LPFCLNYLNTSDCKRLQSLPK 133
                  L  L   DC  L +LP 
Sbjct: 249 FGGRA-PLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 7e-19
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 4   LQEIDLF-LSGIKELPSSI------EHIEGLKCLR-LN-SCTKLGFLPESLCNLKKLQKL 54
           L+E+ +     + ELP  +         +GL  L+ L    T +  LP S+ NL+ L+ L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 55  CLSQCRCLIL-SGLSSLSSLKCLELSGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPE 112
            +       L   +  L  L+ L+L G     + P        LK L L +C+ + +LP 
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 113 ----LPFCLNYLNTSDCKRLQSLPK 133
               L   L  L+   C  L  LP 
Sbjct: 272 DIHRLT-QLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 3/134 (2%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLN-SCTKLGFLPESLCNLKKLQKLCLSQC 59
               Q        +K     +E       + L      L   P+    L  LQ + +   
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114

Query: 60  RCLIL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCL 117
             + L   +   + L+ L L+ +   +LP  I+ L RL+ L +  C  +  LP  L    
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 118 NYLNTSDCKRLQSL 131
                     LQSL
Sbjct: 175 ASGEHQGLVNLQSL 188

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 3/115 (2%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ + +  S +  L  +I H+  L+ L L  CT L   P        L++L L  C  L+
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 64  L--SGLSSLSSLKCLELSG-HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF 115
                +  L+ L+ L+L G  N   LP+ I+QL     + +      +     P 
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 31/154 (20%)

Query: 9   LFLSGIKELPSSIEHIEGLKCLR----------------------LNSCTKLGFLPESL- 45
           L+  G   L    + +   +                           +   L    + L 
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 46  -CNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN 103
                    L L              LS L+ + +       LP  + Q   L+ L L  
Sbjct: 77  DATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL-A 135

Query: 104 CNMIRSLPE----LPFCLNYLNTSDCKRLQSLPK 133
            N +R+LP     L   L  L+   C  L  LP+
Sbjct: 136 RNPLRALPASIASLN-RLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 30/141 (21%)

Query: 20  SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR--------------CLILS 65
              H  G + L     T L    + L   ++      ++                     
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 66  GLSSL---------SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE---- 112
            L +               LEL        P    +L  L+ + + +   +  LP+    
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI-DAAGLMELPDTMQQ 125

Query: 113 LPFCLNYLNTSDCKRLQSLPK 133
               L  L  +    L++LP 
Sbjct: 126 FA-GLETLTLARNP-LRALPA 144

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 23/148 (15%), Positives = 56/148 (37%), Gaps = 17/148 (11%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           ++       +    +    S  +++ L  + L +C  +  LP+ L +L +LQ L ++  R
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 61  -----------CLILSGLSSLSSLKCLELSGHNFESLP--TGISQLQRLKCLHLINCNMI 107
                        +     +   ++   +  +N E  P    + ++ +L  L  ++ N +
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKV 585

Query: 108 RSLPELPFC--LNYLNTSDCKRLQSLPK 133
           R L        L  L      +++ +P+
Sbjct: 586 RHLEAFGTNVKLTDLKLDYN-QIEEIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 14/144 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEH--IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
           L  IDL  + +  L        +  L  + ++        P    N  +L+   +   R 
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRD 788

Query: 62  L--------ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL 113
                      +G+++  SL  L++  ++   +   +    +L  L + + N   S+   
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIAD-NPNISIDVT 845

Query: 114 PFCLNYLNTSDCKRLQSLPKISSC 137
             C                 I  C
Sbjct: 846 SVCPYIEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 29/153 (18%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSC-------TKLGFLPESLCNLKKLQKLC 55
              + L  + I++ P+ +      +  + L++          L     +  N   L  + 
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 56  LSQCRCLILSGL------SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHL------IN 103
           L   +   L+ L      ++L  L  +++S + F S PT      +LK   +        
Sbjct: 735 LRFNK---LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 104 CNMIRSLPELPFC----LNYLNTSDCKRLQSLP 132
             ++R  P         L  L       ++ + 
Sbjct: 792 NRILRQWPTG-ITTCPSLIQLQIGSN-DIRKVD 822

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRCL 62
           L  +D   + ++ L +       L  L+L+   ++  +PE  C    +++ L  S  +  
Sbjct: 575 LGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-- 630

Query: 63  ILSGL------SSLSSLKCLELSGHNFESLPTGIS------QLQRLKCLHLINCNMIRSL 110
            L  +       S+  +  ++ S +   S    IS      +      + L   N I+  
Sbjct: 631 -LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY-NEIQKF 688

Query: 111 PELPFC----LNYLNTSDCKRLQSLPK 133
           P   F     ++ +  S+   + S+P+
Sbjct: 689 PTELFATGSPISTIILSNN-LMTSIPE 714

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 4/136 (2%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLR--LNSCTKLGFLP-ESLCNLKKLQKLCLS 57
           M   ++  + +   K      + +     L+  +N   ++  +  +S  +LK  Q   L+
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 58  QCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
                I   +  L+ L+ +  +   F      +              N   S   L   L
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DL 493

Query: 118 NYLNTSDCKRLQSLPK 133
             +   +C  +  LP 
Sbjct: 494 TDVELYNCPNMTQLPD 509

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 15/161 (9%)

Query: 9   LFLSG---IKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS 65
           L L+G      +P +I  +  LK L   + ++                    + R  +  
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 66  G---LSSLSSLKCLELSGHNFESLPTGIS----QLQRLKCLHLINC-NMIRSLP-ELPFC 116
               L     L   +L        P            LK   + N  N I  +   +   
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 117 --LNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMF 155
             L  +  ++              +  S+  +      + +
Sbjct: 448 TKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSW 487

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           +  + +  + +  LP+       L+ L + S  +L  LP     L +L            
Sbjct: 63  ITTLVIPDNNLTSLPALPPE---LRTLEV-SGNQLTSLPVLPPGLLELSIFSNPLTH--- 115

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTS 123
           L  L   S L  L + G+   SLP     LQ L        N + SLP LP  L  L   
Sbjct: 116 LPAL--PSGLCKLWIFGNQLTSLPVLPPGLQELSVSD----NQLASLPALPSELCKLWAY 169

Query: 124 DCKRLQSLPKISSCLET 140
           +  +L SLP + S L+ 
Sbjct: 170 NN-QLTSLPMLPSGLQE 185

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 3e-14
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L ++ +F + +  LP     ++ L      S  +L  LP     L KL        +   
Sbjct: 123 LCKLWIFGNQLTSLPVLPPGLQELSV----SDNQLASLPALPSELCKLW---AYNNQ--- 172

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L+ L    S L+ L +S +   SLPT  S+L +L   +    N + SLP LP  L  L  
Sbjct: 173 LTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKELIV 228

Query: 123 SDCKRLQSLPKISSCLET 140
           S   RL SLP + S L+ 
Sbjct: 229 SGN-RLTSLPVLPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 42/169 (24%), Positives = 63/169 (37%), Gaps = 39/169 (23%)

Query: 4   LQEIDLFLSGIKELPSSI------------------EHIEGLKCLRLNSCTKLGFLPESL 45
              +++  SG+  LP  +                       L+ L + S  +L  LP   
Sbjct: 42  NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEV-SGNQLTSLPVLP 100

Query: 46  CNLKKLQKLCLS---------QCRCLILSG--LSSL----SSLKCLELSGHNFESLPTGI 90
             L +L                   L + G  L+SL      L+ L +S +   SLP   
Sbjct: 101 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALP 160

Query: 91  SQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
           S+L +L   +    N + SLP LP  L  L+ SD  +L SLP + S L 
Sbjct: 161 SELCKLWAYN----NQLTSLPMLPSGLQELSVSDN-QLASLPTLPSELY 204

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 9e-10
 Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 24/132 (18%)

Query: 26  GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL-SSLSSLKCLELSGHNFE 84
           G   L +   + L  LP+ L     +  L +       L+ L +    L+ LE+SG+   
Sbjct: 41  GNAVLNV-GESGLTTLPDCL--PAHITTLVIPDNN---LTSLPALPPELRTLEVSGNQLT 94

Query: 85  SLPTGISQLQRLKCLHL----------------INCNMIRSLPELPFCLNYLNTSDCKRL 128
           SLP     L  L                     I  N + SLP LP  L  L+ SD  +L
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QL 153

Query: 129 QSLPKISSCLET 140
            SLP + S L  
Sbjct: 154 ASLPALPSELCK 165

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 33/166 (19%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLK-------------- 49
           LQE+ +  + +  LP+    +  L         +L  LP     LK              
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKELIVSGNRLTSLPV 238

Query: 50  ---KLQKLCLSQCRCLILSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105
              +L++L +S  R   L+ L    S L  L +  +    LP  +  L     ++L   N
Sbjct: 239 LPSELKELMVSGNR---LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG-N 294

Query: 106 MIRSLP-----ELPFCLNYLN--TSDCKRLQSLPKISSCLETPSNQ 144
            +         E+     Y            S P+ +  L   +  
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 70  LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQ 129
            +    L +      +LP  +     +  L +   N + SLP LP  L  L  S   +L 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL--PAHITTLVI-PDNNLTSLPALPPELRTLEVSGN-QLT 94

Query: 130 SLPK 133
           SLP 
Sbjct: 95  SLPV 98

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.3 bits (164), Expect = 9e-13
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 16/130 (12%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           +  +++  + +  LP     +E L         +L  LPE   +LK L    +   +   
Sbjct: 82  ITVLEITQNALISLPELPASLEYLDA----CDNRLSTLPELPASLKHLD---VDNNQ--- 131

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L+ L    + L+ +    +    LP   + L+ L   +    N +  LPELP  L  L+ 
Sbjct: 132 LTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRN----NQLTFLPELPESLEALDV 187

Query: 123 SDCKRLQSLP 132
           S    L+SLP
Sbjct: 188 STN-LLESLP 196

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHI--EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
            ++  L      E  S ++         L+L +   L  LP++L    ++  L ++Q   
Sbjct: 36  WEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLSSLPDNLP--PQITVLEITQNA- 91

Query: 62  LILSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
             L  L    +SL+ L+   +   +LP   + L+ L   +    N +  LPELP  L Y+
Sbjct: 92  --LISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDN----NQLTMLPELPALLEYI 145

Query: 121 NTSDCKRLQSLPKISSCLET 140
           N  +  +L  LP++ + LE 
Sbjct: 146 NADNN-QLTMLPELPTSLEV 164

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +D+  + +  LP        L+ +  ++  +L  LPE   +L   + L +   +   
Sbjct: 122 LKHLDVDNNQLTMLPELPAL---LEYINADN-NQLTMLPELPTSL---EVLSVRNNQ--- 171

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLI---NCNMIRSLPELPFCLNY 119
           L+ L     SL+ L++S +  ESLP    +    +   +      N I  +PE    L+ 
Sbjct: 172 LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDP 231

Query: 120 LNTSDCK--RLQSLPKISSCLET 140
             T   +   L S  + S   +T
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 3   LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-- 60
           LL+ I+   + +  LP        L+ L + +  +L FLPE   +L+ L    +S     
Sbjct: 141 LLEYINADNNQLTMLPELPTS---LEVLSVRNN-QLTFLPELPESLEALD---VSTNLLE 193

Query: 61  ---CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
               + +    S  +        +    +P  I  L     + L + N + S        
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED-NPLSSRIRESLSQ 252

Query: 118 NYLNTSDCKRLQSLPKISSCLETP 141
                                 T 
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 41  LPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLH 100
              +    +K      ++   + L     ++    L+L+  N  SLP  +    ++  L 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLE 86

Query: 101 LINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
           +   N + SLPELP  L YL+  D  RL +LP++ + L+
Sbjct: 87  I-TQNALISLPELPASLEYLDACDN-RLSTLPELPASLK 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           + +I    S IK +   I+++  +  L LN    T +    + L NLK L  L L + + 
Sbjct: 45  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI----KPLTNLKNLGWLFLDENKI 99

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNY 119
             LS L  L  LK L L  +    +  G+  L +L+ L+L   N I  +  L     L+ 
Sbjct: 100 KDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYL-GNNKITDITVLSRLTKLDT 157

Query: 120 LNTSDCKRLQSLPKISSC 137
           L+  D + +  +  ++  
Sbjct: 158 LSLEDNQ-ISDIVPLAGL 174

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 14/188 (7%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L+ + L  +GI ++ + + H+  L+ L L +   T +      L  L KL  L L   + 
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI 165

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLN 121
             +  L+ L+ L+ L LS ++   L   ++ L+ L  L L +   +         L   N
Sbjct: 166 SDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 122 T---SDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRR 178
           T   +D   L +   IS   +      + +  LP     V+ +     T     A F  R
Sbjct: 225 TVKNTDGS-LVTPEIISDDGDYEKPNVKWH--LPEFTNEVSFIFYQPVTIGKAKARFHGR 281

Query: 179 VHNALPGI 186
           V   L  +
Sbjct: 282 VTQPLKEV 289

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 26/129 (20%)

Query: 14  IKEL---PSSIEHIEGLK--------CLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           + E     + I+ I             L+  S T       +   L  + ++  +     
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA----VTQNELNSIDQIIANNSDIK 56

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
            + G+  L ++  L L+G+    +   ++ L+ L  L L   N I+ L  L         
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDE-NKIKDLSSL--------- 105

Query: 123 SDCKRLQSL 131
            D K+L+SL
Sbjct: 106 KDLKKLKSL 114

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 9   LFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-------- 60
            +    K      ++++ L  + + +C  L  LP  L  L ++Q + ++  R        
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 61  --CLILSGLSSLSSLKCLELSGHNFESL--PTGISQLQRLKCLHLINCNMIRSLPELPFC 116
                L+       ++ + +  +N ++    T + ++++L  L  +   +   LP     
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352

Query: 117 --LNYLNTSDCKRLQSLPK 133
             L  LN +   ++  +P 
Sbjct: 353 IKLASLNLAYN-QITEIPA 370

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 6/130 (4%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
             +I    + I  +  ++  +  L+   + +   +          +  +     +     
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK---TE 241

Query: 64  LSGLSSLSSLKCLELSGHNF-ESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL-N 121
                +L  L  +E+        LPT +  L  ++ +++  CN   S  +L      L +
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV-ACNRGISGEQLKDDWQALAD 300

Query: 122 TSDCKRLQSL 131
               +++Q +
Sbjct: 301 APVGEKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 33/156 (21%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSC-------TKLGFLPESLCNLKKLQK 53
           +  I+L    +S              L  + L            L    E+  N   L  
Sbjct: 435 VSSINLSNNQISKF--PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 54  LCLSQCRCLILSGL------SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINC--- 104
           + L   +   L+ L      ++L  L  ++LS ++F   PT       LK   + N    
Sbjct: 493 IDLRFNK---LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 105 ---NMIRSLPE----LPFCLNYLNTSDCKRLQSLPK 133
                +R  PE     P  L  L       ++ + +
Sbjct: 550 QGNRTLREWPEGITLCPS-LTQLQIGSN-DIRKVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 27/144 (18%)

Query: 4   LQEIDL---------FLSGIKELPSSIEHIEGLKCLRLNSCTKL--GFLPESLCNLKKLQ 52
           +Q I++          L    +  +     E ++ + +     L    +  SL  +KKL 
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLG 333

Query: 53  KLCLSQCRCLILSG----LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMI 107
            L     +   L G      S   L  L L+ +    +P       ++++ L   + N +
Sbjct: 334 MLECLYNQ---LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKL 389

Query: 108 RSLPELPFCLNYLNTSDCKRLQSL 131
           + +P +    +         + ++
Sbjct: 390 KYIPNIFDAKS------VSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 18/154 (11%), Positives = 43/154 (27%), Gaps = 26/154 (16%)

Query: 4   LQEIDLFLSGIKELPSSIEH--IEGLKCLRLN-------SCTKLGFLPESLCNLKKLQKL 54
           ++ +    + +K +P+  +   +  +  +  +              L  +      +  +
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 55  CLSQCR--CLILSGLSSLSSLKCLELSGHNFESLPTG--------ISQLQRLKCLHLINC 104
            LS  +         S+ S L  + L G+    +P                L  + L   
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF- 497

Query: 105 NMIRSLP-ELPFC----LNYLNTSDCKRLQSLPK 133
           N +  L  +        L  ++ S        P 
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 12/118 (10%), Positives = 34/118 (28%), Gaps = 15/118 (12%)

Query: 9   LFLSG--IKELPSSIEHIEGLKCLRLNSCTKL------GFLPESLCNLKKLQKLCLSQCR 60
           + LS     + P+   +   LK   + +             PE +     L +L +    
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 61  CLILSGL--SSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPELPF 115
              +  +      ++  L++  +   S+  + +          L   +  + +     
Sbjct: 578 ---IRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY-DKTQDIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 13/138 (9%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 4   LQEIDL-----FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLK--KLQKLCL 56
           L+ + L      ++     P  I      +  +           +         L K C+
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 57  SQC--RCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELP 114
           +    +  I            +    +N   +   + +L +L+  ++ N   +       
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI--C 224

Query: 115 FCLNYLNTSDCKRLQSLP 132
                 N+   ++ ++  
Sbjct: 225 EAWENENSEYAQQYKTED 242

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 3   LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC- 61
            LQE     S + E+P   E+++                P      +++    L  C   
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 62  ----LILSGLS------SLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111
               L L+ L           L+ L  S ++   LP     L+ L   +    N +++L 
Sbjct: 72  QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDN----NNLKALS 127

Query: 112 ELPFCLNYLNTSDCKRLQSLPKISSC 137
           +LP  L YL  S+ + L+ LP++ + 
Sbjct: 128 DLPPLLEYLGVSNNQ-LEKLPELQNS 152

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 26/152 (17%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +    + + ELP   + ++ L     N+   L  LP  L      + L +S  +   
Sbjct: 93  LESLVASCNSLTELPELPQSLKSLLVDN-NNLKALSDLPPLL------EYLGVSNNQLEK 145

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHL------------------INCN 105
           L  L + S LK +++  ++ + LP     L+ +   +                    + N
Sbjct: 146 LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205

Query: 106 MIRSLPELPFCLNYLNTSDCKRLQSLPKISSC 137
            ++ LP+LP  L  +   +   L+ LP++ + 
Sbjct: 206 SLKKLPDLPLSLESIVAGNNI-LEELPELQNL 236

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ I    + ++ELP  ++++  L  +  ++   L  LP+   +L+ +            
Sbjct: 175 LEFIAAGNNQLEELPE-LQNLPFLTAIYADNN-SLKKLPDLPLSLESIV---AGNNILEE 229

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTS 123
           L  L +L  L  +    +  ++LP     L+ L        N +  LPELP  L +L+ S
Sbjct: 230 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD----NYLTDLPELPQSLTFLDVS 285

Query: 124 DCKRLQSLPKISSCLET 140
           +      L ++   L  
Sbjct: 286 EN-IFSGLSELPPNLYY 301

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L  ++   + I+ L      +E L      S  KL  LP     L   ++L  S      
Sbjct: 299 LYYLNASSNEIRSLCDLPPSLEELNV----SNNKLIELPALPPRL---ERLIASFNH--- 348

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L+ +     +LK L +  +     P     ++ L+       + +  +PELP  L  L+ 
Sbjct: 349 LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM-----NSHLAEVPELPQNLKQLHV 403

Query: 123 SDCKRLQSLPKISSCLE 139
                L+  P I   +E
Sbjct: 404 ETN-PLREFPDIPESVE 419

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 24/157 (15%)

Query: 2   ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
            LL+ + +  + +++LP  +++   LK + +     L  LP+   +L+ +        + 
Sbjct: 131 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDV-DNNSLKKLPDLPPSLEFIA---AGNNQL 185

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLH------------------LIN 103
             L  L +L  L  +    ++ + LP     L+ +   +                    +
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 104 CNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLET 140
            N++++LP+LP  L  LN  D   L  LP++   L  
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDN-YLTDLPELPQSLTF 281

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ I    + ++ELP  ++++  L  +       L  LP+   +L+ L            
Sbjct: 217 LESIVAGNNILEELPE-LQNLPFLTTIYA-DNNLLKTLPDLPPSLEALNVRDNY------ 268

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L+ L     SL  L++S + F  L      L  L        N IRSL +LP  L  LN 
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS----NEIRSLCDLPPSLEELNV 324

Query: 123 SDCKRLQSLPKISSCLET 140
           S+ K L  LP +   LE 
Sbjct: 325 SNNK-LIELPALPPRLER 341

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +    + + E+P   ++   LK L +     L   P+   +++ L+          +
Sbjct: 339 LERLIASFNHLAEVPELPQN---LKQLHVEYN-PLREFPDIPESVEDLR------MNSHL 388

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
                   +LK L +  +     P     ++ L+    +N   +    E     
Sbjct: 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDLR----MNSERVVDPYEFAHET 438

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           + ++ +    +  +   IE++  L+ L LN   ++  +   L NL KL  L +   +   
Sbjct: 46  ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITD 102

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           +S L +L++L+ L L+  N   +   ++ L ++  L+L   + +  L  L     LNYL 
Sbjct: 103 ISALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161

Query: 122 TSDCKRLQSLPKISSC 137
            ++ K ++ +  I++ 
Sbjct: 162 VTESK-VKDVTPIANL 176

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 24/136 (17%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+E+ L    I ++   + ++  +  L L +   L      L N+  L  L +++ +   
Sbjct: 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD 169

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           ++ +++L+ L  L L+ +  E +   ++ L  L        N I  +  +     LN L 
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTA-YVNQITDITPVANMTRLNSLK 227

Query: 122 TSDCKRLQSLPKISSC 137
             +  ++  L  +++ 
Sbjct: 228 IGNN-KITDLSPLANL 242

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 20/136 (14%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
              +    + I ++      +       L   +       +   L+ + KL ++  +   
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS 58

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           + G+  L++L+ L L+G+    +   +S L +L  L++   N I  +  L     L  L 
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGT-NKITDISALQNLTNLRELY 116

Query: 122 TSDCKRLQSLPKISSC 137
            ++   +  +  +++ 
Sbjct: 117 LNEDN-ISDISPLANL 131

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L  + L  + I+++ S +  +  L          T +      + N+ +L  L +   + 
Sbjct: 179 LYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDI----TPVANMTRLNSLKIGNNKI 233

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNY 119
             LS L++LS L  LE+  +    +   +  L +LK L++ + N I  +  L     LN 
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGS-NQISDISVLNNLSQLNS 291

Query: 120 LNTSDCK 126
           L  ++ +
Sbjct: 292 LFLNNNQ 298

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 14/140 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L     +++ I ++   + ++  L  L++ +   T L      L NL +L  L +   + 
Sbjct: 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL----SPLANLSQLTWLEIGTNQI 255

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC----L 117
             ++ +  L+ LK L +  +    +   ++ L +L  L L N N + +           L
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNN-NQLGNEDMEVIGGLTNL 313

Query: 118 NYLNTSDCKRLQSLPKISSC 137
             L  S    +  +  ++S 
Sbjct: 314 TTLFLSQNH-ITDIRPLASL 332

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 18/100 (18%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR--C 61
           L  +++  + I ++ + ++ +  LK L + S  ++  +   L NL +L  L L+  +   
Sbjct: 245 LTWLEIGTNQISDINA-VKDLTKLKMLNVGS-NQISDIS-VLNNLSQLNSLFLNNNQLGN 301

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHL 101
             +  +  L++L  L LS ++   +   ++ L ++     
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADF 340

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 12/134 (8%)

Query: 11  LSGIKELPSSIEHIEGLKCL--------RLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           L  +     ++++   LK +               L            ++ L L+     
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYL 120
           +L  L  L  +  L+LS +   +LP  ++ L+ L+ L   + N + ++  +     L  L
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA-SDNALENVDGVANLPRLQEL 513

Query: 121 NTSDCKRLQSLPKI 134
              + + LQ    I
Sbjct: 514 LLCNNR-LQQSAAI 526

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           +  +DL  + ++ LP ++  +  L+ L+ +    L  +   + NL +LQ+L L   R   
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNRLQQ 522

Query: 64  LSG---LSSLSSLKCLELSGHNFESLPTGISQLQRL 96
            +    L S   L  L L G++         +L  +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKL-GFLPESLCNLKKLQKLCLSQC 59
           +  +DL    L     +PSS+ ++  L  L +     L G +P ++  L +L  L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 60  RCLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPE 112
               +SG     LS + +L  L+ S +    +LP  IS L  L  +      +  ++P+
Sbjct: 112 N---VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 4   LQEIDLF----LSGIKELPSSIEHIEGLKCLRLNSCTKL-GFLPESLCNLKKLQKLCLSQ 58
           L  + +     L G   +P +I  +  L  L +   T + G +P+ L  +K L  L  S 
Sbjct: 78  LNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 59  CRCLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRL-KCLHLINCNMIRSLP 111
                LSG     +SSL +L  +   G+    ++P       +L   + +    +   +P
Sbjct: 135 NA---LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 112 E 112
            
Sbjct: 192 P 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 17  LPSSIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLS 71
           L  +      +  L L   +  K   +P SL NL  L  L +     L   I   ++ L+
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 72  SLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLP 111
            L  L ++  N   ++P  +SQ++ L  L      +  +LP
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 3   LLQEIDL---FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC 59
           L   + +    L+G  ++P +  ++  L  + L+     G       + K  QK+ L++ 
Sbjct: 175 LFTSMTISRNRLTG--KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 60  RCLILSG----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHL 101
               L+     +    +L  L+L  +    +LP G++QL+ L  L++
Sbjct: 232 S---LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRC 61
           L+E+ L  + I+ +PS     I  L+ L L    +L ++ E +   L  L+ L L+ C  
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC---- 116
             +  L+ L  L  L+LSG++  ++  G    L  L+ L +   + I+ +    F     
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM-IQSQIQVIERNAFDNLQS 256

Query: 117 LNYLNTSDCKRLQSLP 132
           L  +N +    L  LP
Sbjct: 257 LVEINLAHN-NLTLLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 13  GIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG--LSS 69
            ++E+P  I  +   L  L  N    +     S  +L+ L+ L LS+     +     + 
Sbjct: 54  NLREVPDGISTNTRLLN-LHENQIQIIK--VNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110

Query: 70  LSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSD 124
           L++L  LEL  +   ++P G    L +LK L L N N I S+P   F     L  L+  +
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGE 169

Query: 125 CKRLQSLP 132
            KRL  + 
Sbjct: 170 LKRLSYIS 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 12/142 (8%)

Query: 2   ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQC 59
                ++  L        +   +  L  + L +   T L      +     ++ L ++  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL----TGIEYAHNIKDLTINNI 76

Query: 60  RCLILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHL----INCNMIRSLPELP 114
                + +S LS+L+ L + G +  S     +S L  L  L +     + +++  +  LP
Sbjct: 77  HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 115 FCLNYLNTSDCKRLQSLPKISS 136
             +N ++ S    +  +  + +
Sbjct: 137 -KVNSIDLSYNGAITDIMPLKT 157

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC-- 61
           ++++ +         + I  +  L+ LR+           +L  L  L  L +S      
Sbjct: 68  IKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNM--IRSLPELPFCLNY 119
            IL+ +++L  +  ++LS +   +    +  L  LK L++    +   R + + P  LN 
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQ 185

Query: 120 LNTSDCK 126
           L      
Sbjct: 186 LYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 25  EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFE 84
              K        +      +   +  L  + L+      L+G+    ++K L ++  +  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT 79

Query: 85  SLPTGISQLQRLKCLHLINCN----MIRSLPELPFCLNYLNTSDCK 126
           +    IS L  L+ L ++  +     I +L  L   L  L+ S   
Sbjct: 80  NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSA 123

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           + +I    S IK +   I+++  +  L L +  KL  + + L NLK L  L L + +   
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFL-NGNKLTDI-KPLANLKNLGWLFLDENKVKD 104

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN--MIRSLPELPFCLNYLN 121
           LS L  L  LK L L  +    +  G+  L +L+ L+L N     I  L  L   L+ L+
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLT-KLDTLS 162

Query: 122 TSDCKRLQSLPKISSC 137
             D + +  +  ++  
Sbjct: 163 LEDNQ-ISDIVPLAGL 177

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 43  ESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLI 102
            S     +  K  L +         + L+S+  +  +  + +S+  GI  L  +  L L 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLN 76

Query: 103 NCNMIRSLPELPFC--LNYLNTSDCK 126
             N +  +  L     L +L   + K
Sbjct: 77  G-NKLTDIKPLANLKNLGWLFLDENK 101

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L+ + L  + I ++ + +  +  L  L L     + +      L  L KLQ L LS+   
Sbjct: 136 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI----VPLAGLTKLQNLYLSKNHI 190

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMI 107
             L  L+ L +L  LEL      + P    S L     +   + +++
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 29/133 (21%), Positives = 67/133 (50%), Gaps = 17/133 (12%)

Query: 4   LQEIDLFLS--GIKELPSSIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLSQC 59
            ++++L      I+++ +++  ++  K L L  N+  K+     SL  ++ L+ L L + 
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI----SSLSGMENLRILSLGRN 80

Query: 60  RCLILSGLSSLS-SLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLN 118
               +  L +++ +L+ L +S +   SL +GI +L  L+ L++ + N I +  E    ++
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYM-SNNKITNWGE----ID 134

Query: 119 YLNTSDCKRLQSL 131
            L  +   +L+ L
Sbjct: 135 KL--AALDKLEDL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 14  IKELPSSIEHIEGLKCLRL------NSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL 67
           IK+     E  + +                +  +  +L  LK  + L LS      +S L
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 66

Query: 68  SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKR 127
           S + +L+ L L  +  + +    +    L+ L +   N I SL  +              
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLSGI---------EKLVN 116

Query: 128 LQSL 131
           L+ L
Sbjct: 117 LRVL 120

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRC 61
           L+E+ L  + I+ +PS     +  L  L L    KL ++ E +   L  L+ L L  C  
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPFC---- 116
             +  L+ L  L+ LE+SG++F  +  G    L  LK L +   + +  +    F     
Sbjct: 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV-MNSQVSLIERNAFDGLAS 267

Query: 117 LNYLNTSDCKRLQSLP 132
           L  LN +    L SLP
Sbjct: 268 LVELNLAHN-NLSSLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 13  GIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG--LSS 69
           G+ E+P  I  +   L  L  N+   +    ++  +L  L+ L L +     +     + 
Sbjct: 65  GLSEVPQGIPSNTRYLN-LMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121

Query: 70  LSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSD 124
           L+SL  LEL  +    +P+G    L +L+ L L N N I S+P   F     L  L+  +
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGE 180

Query: 125 CKRLQSLP 132
            K+L+ + 
Sbjct: 181 LKKLEYIS 188

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 19  SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLEL 78
           S I  + GL  L+  S        + L NL  L++L +S  +   +S L+ L++L+ L  
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 206

Query: 79  SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLNTSDCKRLQSLPKISS 136
           + +    +   +  L  L  L L   N ++ +  L     L  L+ ++ + + +L  +S 
Sbjct: 207 TNNQISDIT-PLGILTNLDELSLNG-NQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG 263

Query: 137 C 137
            
Sbjct: 264 L 264

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +    + I ++   +  +  L  L LN   +L  +  +L +L  L  L L+  +   
Sbjct: 201 LESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISN 257

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           L+ LS L+ L  L+L  +   ++   ++ L  L  L L   N +  +  +     L YL 
Sbjct: 258 LAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNE-NQLEDISPISNLKNLTYLT 315

Query: 122 TSDCKRLQSLPKISSC 137
                 +  +  +SS 
Sbjct: 316 LYFNN-ISDISPVSSL 330

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 19  SSIEHIEGLK-----CLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSL 73
           + I     L       L   + T       S  +L ++  L   +     + G+  L++L
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDT----VSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 70

Query: 74  KCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLNTSDCKRLQSL 131
             +  S +    +   +  L +L  + + N N I  +  L     L  L   + + +  +
Sbjct: 71  TQINFSNNQLTDIT-PLKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQ-ITDI 127

Query: 132 PKISSC 137
             + + 
Sbjct: 128 DPLKNL 133

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L E+ L  + I  +   +  +  L  L LN   +L  +   + NLK L  L L       
Sbjct: 267 LTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISD 323

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           +S +SSL+ L+ L    +    +   ++ L  +  L   + N I  L  L     +  L 
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGH-NQISDLTPLANLTRITQLG 381

Query: 122 TSDCK 126
            +D  
Sbjct: 382 LNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 27/156 (17%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLN-----------SCTKLGFL---------PE 43
           +  +     GIK +   +E++  L  +  +           + TKL  +           
Sbjct: 48  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT 106

Query: 44  SLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN 103
            L NL  L  L L   +   +  L +L++L  LELS +    +   +S L  L+ L    
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF-- 163

Query: 104 CNMIRSLPELPFC--LNYLNTSDCKRLQSLPKISSC 137
            N +  L  L     L  L+ S  K +  +  ++  
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKL 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 14/107 (13%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           L+++ L+   L G  E+P  + +++ L+ L L+     G +P  L N   L  + LS  R
Sbjct: 444 LRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 61  CLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHL 101
              L+G     +  L +L  L+LS ++F  ++P  +   + L  L L
Sbjct: 502 ---LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 24/138 (17%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           LQ +D+    LSG  +   +I     LK L ++S   +G +P     LK LQ L L++ +
Sbjct: 225 LQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280

Query: 61  CLILSG------LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL 113
               +G        +  +L  L+LSG++F  ++P        L+ L L + N    LP  
Sbjct: 281 ---FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 114 PFCLNYLNTSDCKRLQSL 131
                       + L+ L
Sbjct: 338 TL-------LKMRGLKVL 348

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           LQE+ L     +G  ++P ++ +   L  L L+     G +P SL +L KL+ L L    
Sbjct: 396 LQELYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 61  CLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPE 112
              L G     L  + +L+ L L  ++    +P+G+S    L  + L N  +   +P+
Sbjct: 454 ---LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 16/120 (13%)

Query: 4   LQEIDLF---LSGIKELPSSIEHI--EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ 58
           L  +DL     SG   +  ++       L+ L L +    G +P +L N  +L  L LS 
Sbjct: 370 LLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 59  CRCLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPE 112
                LSG     L SLS L+ L+L  +  E  +P  +  ++ L+ L L   ++   +P 
Sbjct: 428 NY---LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           L+ +D+     S    +P  +     L+ L ++     G    ++    +L+ L +S  +
Sbjct: 202 LEFLDVSSNNFST--GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 61  CLILSG---LSSLSSLKCLELSGHNFE-SLPTGIS-QLQRLKCLHLINCNMIRSLPE 112
                G      L SL+ L L+ + F   +P  +S     L  L L   +   ++P 
Sbjct: 259 ---FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 4   LQEIDLF---LSGIKELPSSIEH-IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC 59
           LQ + L     +G  E+P  +    + L  L L+     G +P    +   L+ L LS  
Sbjct: 271 LQYLSLAENKFTG--EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 60  RCLILSG------LSSLSSLKCLELSGHNFE-SLPTGISQL-QRLKCLHLINCNMIRSLP 111
                SG      L  +  LK L+LS + F   LP  ++ L   L  L L + N    + 
Sbjct: 329 N---FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 23  HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG----LSSLSSLKCLEL 78
            +  +             +  SL +L  L+ L LS      ++G        +SL  L+L
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH---INGSVSGFKCSASLTSLDL 107

Query: 79  SGHNFE-SLPTG--ISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
           S ++    + T   +     LK L++ +  +      +   L          L+ L
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLK------LNSLEVL 156

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 16  ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG-------LS 68
            + SS+  + GL+ L L++    G +         L  L LS+     LSG       L 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNS---LSGPVTTLTSLG 123

Query: 69  SLSSLKCLELSGHNFE-SLPT-GISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCK 126
           S S LK L +S +  +      G  +L  L+ L L   ++  +        +      C 
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD-----GCG 178

Query: 127 RLQSL 131
            L+ L
Sbjct: 179 ELKHL 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 1   MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLS 57
            +  + I L  + I  L          ++ L L  N    + F  E   +   L+ L L 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQ 177

Query: 58  QCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
                 + G    + LK L+LS +    +         +  + L N N +  + +     
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFS 236

Query: 118 NYLNT 122
             L  
Sbjct: 237 QNLEH 241

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 4   LQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           ++E+DL  + + ++  + +     L+ L L+S   L    + L +L  L+ L L+     
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-- 91

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF 115
            +  L    S++ L  + +N   +       Q  K ++L N N I  L +L  
Sbjct: 92  -VQELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLAN-NKITMLRDLDE 140

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 4   LQEIDLFLSGIKELP--SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR- 60
           +Q +DL L+ I  +         + L+ L L     +  +   +    KL+ L LS  + 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKL 203

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIR--SLPELPFCLN 118
             +     S + +  + L  +    +   +   Q L+   L   N     +L +      
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQ 262

Query: 119 YLNTSDCKRLQSLP 132
            + T   + ++ L 
Sbjct: 263 RVQTVAKQTVKKLT 276

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 41  LPESLCNLKKLQKLCLSQCR--CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLK 97
           + E   N  + +   ++       + S   S  ++K L+LSG+    +    ++   +L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 98  CLHLINCNMIRSLPELPFC--LNYLNTSDCKRLQSLPKISS 136
            L+L + N++    +L     L  L+ ++   +Q L    S
Sbjct: 62  LLNL-SSNVLYETLDLESLSTLRTLDLNNN-YVQELLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS--QCRC 61
           L+ +DL  + +  +    +   G+  + L +  KL  + ++L   + L+   L      C
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL 113
             L       + +   ++    + L     +   +  L          LP  
Sbjct: 252 GTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L  ++L  + I +L + ++++  +  L L+      +     ++  L+ ++ L L+  + 
Sbjct: 65  LIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV----SAIAGLQSIKTLDLTSTQI 119

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNY 119
             ++ L+ LS+L+ L L  +   ++   ++ L  L+ L +     +  L  L     L  
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSI-GNAQVSDLTPLANLSKLTT 177

Query: 120 LNTSDCKRLQSLPKISSC 137
           L   D K +  +  ++S 
Sbjct: 178 LKADDNK-ISDISPLASL 194

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 13/128 (10%)

Query: 18  PSSIEHIEGLKCLRLNSCTKLGFL------PESLCNLKKLQKLCLSQCRCLILSGLSSLS 71
           P++I  I     L   +  K+           +  +L  +  L         + G+  L+
Sbjct: 6   PTAINVIFPDPALA--NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN 63

Query: 72  SLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLNTSDCKRLQ 129
           +L  LEL  +    L   +  L ++  L L + N ++++  +     +  L+ +  + + 
Sbjct: 64  NLIGLELKDNQITDLA-PLKNLTKITELEL-SGNPLKNVSAIAGLQSIKTLDLTSTQ-IT 120

Query: 130 SLPKISSC 137
            +  ++  
Sbjct: 121 DVTPLAGL 128

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLS--QCR 60
           L  I +  + I  +P  +     L  L L+   K+  +   SL  L  L KL LS     
Sbjct: 173 LSYIRIADTNITTIPQGL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
            +    L++   L+ L L+ +    +P G++  + ++ ++L N N I ++    FC    
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGY 288

Query: 121 NTSDCKRLQSL 131
           NT        +
Sbjct: 289 NT-KKASYSGV 298

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPES--LCNLKKLQKLCLSQCRC 61
           L+ +DL  +G+  + S+   +E L+ L       L  + E     +L+ L  L +S    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 62  LIL--SGLSSLSSLKCLELSGHNF-ESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC- 116
            +      + LSSL+ L+++G++F E+    I ++L+ L  L L +   +  L    F  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNS 492

Query: 117 ---LNYLNTSDCKRLQSLP 132
              L  LN +   +L+S+P
Sbjct: 493 LSSLQVLNMASN-QLKSVP 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 13/141 (9%)

Query: 4   LQEIDL---FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           L+ +DL    LS       S      LK L L+    +  +  +   L++L+ L      
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN 407

Query: 61  CLILSGLS---SLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC 116
              +S  S   SL +L  L++S  +      GI + L  L+ L +   +   +     F 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 117 ----LNYLNTSDCKRLQSLPK 133
               L +L+ S C+ L+ L  
Sbjct: 468 ELRNLTFLDLSQCQ-LEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 10  FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFL------PESLCNLKKLQKLCLSQCRCLI 63
           +  G + L            L+L S  +L F         S  +L  L+ L LS+     
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 64  LSGLS----SLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL-PFC-- 116
               S      +SLK L+LS +   ++ +    L++L+ L     + ++ + E   F   
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFLSL 420

Query: 117 --LNYLNTSDCKRLQSLPK 133
             L YL+ S     +    
Sbjct: 421 RNLIYLDISHT-HTRVAFN 438

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 4   LQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCR- 60
            + +DL  + ++ L S S      L+ L L+ C ++  + +    +L  L  L L+    
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 61  -CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLP 111
             L L   S LSSL+ L     N  SL    I  L+ LK L++ + N+I+S  
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFK 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
             + +L    + +L  S + + G++    ++     L      +     L++L LS  + 
Sbjct: 21  AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL----AGMQFFTNLKELHLSHNQI 75

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNY 119
             LS L  L+ L+ L ++ +  ++L  GI     L  L L N N +R    L     L  
Sbjct: 76  SDLSPLKDLTKLEELSVNRNRLKNLN-GIPSAC-LSRLFLDN-NELRDTDSLIHLKNLEI 132

Query: 120 LNTSDCKRLQSLPKISSC 137
           L+  + K L+S+  +   
Sbjct: 133 LSIRNNK-LKSIVMLGFL 149

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 13/98 (13%)

Query: 21  IEHIEGLKCLRL-------NSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSL 73
           ++++ G+    L       N         +SL +LK L+ L +   +   +  L  LS L
Sbjct: 97  LKNLNGIPSACLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLKSIVMLGFLSKL 152

Query: 74  KCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111
           + L+L G+   +   G+++L+++  + L       + P
Sbjct: 153 EVLDLHGNEITNT-GGLTRLKKVNWIDLTG-QKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 43  ESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLI 102
                L    K  L +     L     LS ++       N +SL  G+     LK LHL 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLS 71

Query: 103 NCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
           + N I  L  L          D  +L+ L
Sbjct: 72  H-NQISDLSPL---------KDLTKLEEL 90

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESL-CNLKKLQKLCLS-- 57
           + +L  +DL  + ++ LP   + +  L  L ++   +L  LP      L +LQ+L L   
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN 134

Query: 58  QCRCLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC 116
           + + L    L+    L+ L L+ +N   LP G+ + L+ L  L L   N + ++P+  F 
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFG 193

Query: 117 LNYLNT 122
            + L  
Sbjct: 194 SHLLPF 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
             E++     +  LP  + +    L  L  N          +L    +L +L L +    
Sbjct: 12  HLEVNCDKRNLTALPPDLPKDTTILH-LSENLLYTFS--LATLMPYTRLTQLNLDRAELT 68

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC----LN 118
            L    +L  L  L+LS +  +SLP     L  L  L + + N + SLP         L 
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQ 127

Query: 119 YLNTSDCKRLQSLP 132
            L     + L++LP
Sbjct: 128 ELYLKGNE-LKTLP 140

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 4   LQEIDLFLSGIKELPS-SIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLSQCR 60
            + I L  + I  L          ++ L L  N    + F  E   +   L+ L L    
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNF 180

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
              + G    + LK L+LS +    +         +  + L N N +  + +       L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNL 239

Query: 121 NT 122
             
Sbjct: 240 EH 241

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 13  GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS--QCRCLILSGLSSL 70
            I E+  +    +  K +  +S  +   L     +   +++L LS      +  + L+  
Sbjct: 1   AIHEIKQNGNRYKIEK-VTDSSLKQA--LASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 71  SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQS 130
           + L+ L LS +        +  L  L+ L L N N ++ L   P  +  L+ ++   +  
Sbjct: 58  TKLELLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELLVGPS-IETLHAANN-NISR 113

Query: 131 LP 132
           + 
Sbjct: 114 VS 115

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           ++E+DL  + + ++  + +     L+ L L+S   L    + L +L  L+ L L+     
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-- 91

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC 116
            +  L    S++ L  + +N   +       Q  K ++L N N I  L +L   
Sbjct: 92  -VQELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLAN-NKITMLRDLDEG 141

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 4   LQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR- 60
           +Q +DL L+ I  +  +      + L+ L L     +  +   +    KL+ L LS  + 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKL 203

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIR--SLPELPFCLN 118
             +     S + +  + L  +    +   +   Q L+   L   N     +L +      
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQ 262

Query: 119 YLNTSDCKRLQSLP 132
            + T   + ++ L 
Sbjct: 263 RVQTVAKQTVKKLT 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLS--QCR 60
           L  + +  + +  +P  +   E L  L L+   K+  +    L    KL +L L   Q R
Sbjct: 174 LNYLRISEAKLTGIPKDL--PETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC 116
            +    LS L +L+ L L  +    +P G+  L+ L+ ++L   N I  +    FC
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFC 285

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 10/138 (7%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-- 60
           +  ++L  + ++ L  ++      L  L +   T     PE    L  L+ L L      
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPFC--- 116
            L     +  ++L  L L  ++ + +      + + L  L L + N + S          
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL-SHNGLSSTKLGTQVQLE 145

Query: 117 -LNYLNTSDCKRLQSLPK 133
            L  L  S+ K +Q+L  
Sbjct: 146 NLQELLLSNNK-IQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 30/142 (21%), Positives = 49/142 (34%), Gaps = 22/142 (15%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           + EI L  +   +L  +S   +  L+ L L   +   +   P     L+ L  L LS   
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 61  --CLILSGLSSLSSLKCLELSGHNFESLPTG---------ISQLQRLKCLHLINCNMIRS 109
              +    L  L  L+ L+L  +N   L            +  L  L  L+L + N    
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDE 550

Query: 110 LPELPFCLNYLNTSDCKRLQSL 131
           +P   F        D   L+ +
Sbjct: 551 IPVEVF-------KDLFELKII 565

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 1   MELLQEIDLFLSGIKEL--PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ 58
           +  L+ +DL L+ I +         +E +  + L+    L     S   +  LQ+L L +
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 59  CRC----LILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL 113
                     S    L +L  L+LS +N  ++    +  L++L+ L L + N +  L + 
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKH 522

Query: 114 PFCLNYLNT-SDCKRLQSL 131
                 +        L  L
Sbjct: 523 ANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 20/143 (13%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS----- 57
           L  +DL  + +  +   S   +  L+   L           SL  L  ++ L L      
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 58  ------QCRCLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHL-INCNMIRS 109
                     +       L  L+ L +  ++   + + + + L  LK L L  +   +R+
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 110 LPELPFC------LNYLNTSDCK 126
           L    F       L+ LN +  K
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNK 392

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 10/129 (7%)

Query: 1   MELLQEIDL---FLSGIKELPSSIEHIE--GLKCLRLNSCTKLGFLPESLCNLKKLQKLC 55
           +  L+ + L   F S       +   +    L  L L          ++   L  L+ L 
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 56  LSQCR---CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLP 111
           L        L       L ++  + LS + +  L     + +  L+ L L     ++++ 
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR-VALKNVD 470

Query: 112 ELPFCLNYL 120
             P     L
Sbjct: 471 SSPSPFQPL 479

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 4   LQEIDLFLSGIKELP--SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR- 60
           LQ +D   S +K +   S+   +E L  L ++              L  L  L ++    
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 61  --CLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFCL 117
               + +  ++ ++L  L+LS    E +  G+   L RL+ L++ + N +  L    +  
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM-SHNNLLFLDSSHY-- 517

Query: 118 NYLNTSDCKRLQSL 131
                +    L +L
Sbjct: 518 -----NQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC--R 60
           LQ +DL    I+ +   +   +  L  L L       F P S   L  L+ L   +    
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTG--ISQLQRLKCLHL-------INCNMIRSLP 111
            L    +  L +LK L ++ +   S       S L  L  + L       I  N ++ L 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 112 ELPFCLNYLNTSDCK 126
           E P     L+ S   
Sbjct: 178 ENPQVNLSLDMSLNP 192

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 15/125 (12%)

Query: 15  KELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC--LILSGLSSLSS 72
            ++PSS ++I+    L  N    L     S  N  +LQ L LS+C    +       L  
Sbjct: 28  DDIPSSTKNID----LSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 73  LKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCKR 127
           L  L L+G+  +S   G  S L  L+ L  +    + SL   P      L  LN +    
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHN-F 139

Query: 128 LQSLP 132
           + S  
Sbjct: 140 IHSCK 144

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           +  + L    IK L    +H    + L +  C +L   P    +L  L+ L L+  +  I
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRC-QLKQFPTL--DLPFLKSLTLTMNKGSI 342

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQ---LQRLKCLHLINCNMIRSLPELPFCLNYL 120
                +L SL  L+LS +                 L+ L L + N    +      L  L
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL-SFNGAIIMSANFMGLEEL 401

Query: 121 NT 122
             
Sbjct: 402 QH 403

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 27  LKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESL 86
           +   RL               L  +  + L+      L  +      + L +     +  
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 87  PTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           PT    L  LK L L   N      +      L+YL+
Sbjct: 323 PT--LDLPFLKSLTL-TMNKGSISFKKVALPSLSYLD 356

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 4   LQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR- 60
           ++ +DL  + I  +    +     L+ L L S  ++  +  ++  +L  L+ L LS    
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 61  -CLILSGLSSLSSLKCLELSGHNFESLPTG--ISQLQRLKCLHLINCNMIRSLPELPFC- 116
             L  S    LSSLK L L G+ +++L        L  L+ L + N      +  + F  
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 117 ---LNYLNTSDCKRLQSLPK 133
              LN L       L++   
Sbjct: 147 LTSLNELEIKALS-LRNYQS 165

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRL--NSCTKLGFLPESLC-NLKKLQKLCLSQC 59
           ++ I +  S +  +P S  +H++ L+ L L  N   +      +       LQ L LSQ 
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 60  RCLILSG----LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP-ELP 114
               +      L +L +L  L++S + F  +P      ++++ L+L +   IR +   +P
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL-SSTGIRVVKTCIP 430

Query: 115 FCLNYLNTSDCKRLQSLPKISSCLET 140
             L  L+ S+   L S       L+ 
Sbjct: 431 QTLEVLDVSNN-NLDSFSLFLPRLQE 455

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 15/196 (7%)

Query: 4   LQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLC--NLKKLQKLCLSQC- 59
           L+ +DL  + +  L SS    +  LK L L        L  +    NL  LQ L +    
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNL-MGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 60  --RCLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPF- 115
               +     + L+SL  LE+   +  +  +  +  ++ +  L L   +    L E+   
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFAD 193

Query: 116 CLNYLNTSD--CKRLQSLPKISSCLETPSNQTRGNSYLPVMF---KFVNCVKLHKGTERN 170
            L+ +   +     L         ++  S+  +  ++   +     F   +KL +     
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 171 FFANFQRRVHNALPGI 186
               F     N L   
Sbjct: 254 SEVEFDDCTLNGLGDF 269

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 25  EGLKCLRLNSC-TKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNF 83
             ++ L L++C +  G +         L+ L L     + +S L  L  LK LELS +  
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRI 83

Query: 84  ESLPTGISQ-LQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
                 +++ L  L  L+L   N ++ +      L  L     + L+SL
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSG-NKLKDIST----LEPL--KKLECLKSL 125

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 21/126 (16%)

Query: 17  LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL-----SSLS 71
           LP S ++++    L  N    LG    S  +  +LQ L LS+C    +  +      SLS
Sbjct: 26  LPFSTKNLD----LSFNPLRHLG--SYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLS 76

Query: 72  SLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCK 126
            L  L L+G+  +SL  G  S L  L+ L  +  N + SL   P      L  LN +   
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH-N 134

Query: 127 RLQSLP 132
            +QS  
Sbjct: 135 LIQSFK 140

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 14/141 (9%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESL-CNLKKLQKLCLS--QC 59
           L  + L  + I+ L       +  L+ L       L  L      +LK L++L ++    
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLI 136

Query: 60  RCLILSGL-SSLSSLKCLELSGHNFESLPTGI----SQLQRLKCLHLINCNMIRSLPELP 114
           +   L    S+L++L+ L+LS +  +S+         Q+  L     ++ N +  +    
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 115 FC---LNYLNTSDCKRLQSLP 132
           F    L  L     + L+S+P
Sbjct: 197 FKEIRLKELALDTNQ-LKSVP 216

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 25  EGLKCLRLNSC-TKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNF 83
             +K L L++  +  G L       ++L+ L         ++ L  L+ LK LELS +  
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 84  ESLPTGISQ-LQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
                 +++    L  L+L   N I+ L      +  L     + L+SL
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSG-NKIKDLST----IEPL--KKLENLKSL 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRC 61
            + +    S +++LP+++ +    ++ L LN   ++  +   +      +QKL +     
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI 111

Query: 62  LILSG--LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFCLN 118
             L      ++  L  L L  ++  SLP GI     +L  L + N N +  + +  F   
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTF--- 167

Query: 119 YLNTSDCKRLQSL 131
                    LQ+L
Sbjct: 168 ----QATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCL 62
           L  + L  + + +    + +  GL  + L S  +L  +       +++L++L +S  R +
Sbjct: 234 LTILKLQHNNLTDTAW-LLNYPGLVEVDL-SYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 63  ILSG-LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF 115
            L+     + +LK L+LS ++   +     Q  RL+ L+L + N I +L     
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH-NSIVTLKLSTH 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRC 61
            + +    S +++LP+++ +    ++ L LN   ++  +   +      +QKL +     
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 62  LILSG--LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFCLN 118
             L      ++  L  L L  ++  SLP GI     +L  L + N N +  + +  F   
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTF--- 161

Query: 119 YLNTSDCKRLQSL 131
                    LQ+L
Sbjct: 162 ----QATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCL 62
           L  + L  + + +    + +  GL  + L S  +L  +       +++L++L +S  R +
Sbjct: 228 LTILKLQHNNLTDTAW-LLNYPGLVEVDL-SYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 63  ILSG-LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC-LNYL 120
            L+     + +LK L+LS ++   +     Q  RL+ L+L + N I +L       L  L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH-NSIVTLKLSTHHTLKNL 344

Query: 121 NTSD 124
             S 
Sbjct: 345 TLSH 348

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-- 60
           LQ +DL    I+ +   + + +  L  L L           +   L  LQKL   +    
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 61  CLILSGLSSLSSLKCLELSGHNFESL--PTGISQLQRLKCLHL-------INCNMIRSLP 111
            L    +  L +LK L ++ +  +S   P   S L  L+ L L       I C  +R L 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 112 ELPFCLNYLNTSDCK 126
           ++P     L+ S   
Sbjct: 174 QMPLLNLSLDLSLNP 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 10  FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFL------PESLCNLKKLQKLCLSQCRC-- 61
           +  G + L            L+L S  +L F         S  +L  L+ L LS+     
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 62  --LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--- 116
                      +SLK L+LS +   ++ +    L++L+ L   + N+ +      F    
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 117 -LNYLNTSDCKRLQSLP 132
            L YL+ S     +   
Sbjct: 422 NLIYLDISHT-HTRVAF 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 15/138 (10%)

Query: 1   MELLQEIDL---FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS 57
           +  L+ +DL    LS       S      LK L L+    +  +  +   L++L+ L   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQ 404

Query: 58  QCR---CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL 113
                     S   SL +L  L++S  +      G  + L  L+ L +   +   +    
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 114 PFCLNYLNTSDCKRLQSL 131
            F       ++ + L  L
Sbjct: 465 IF-------TELRNLTFL 475

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 15  KELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR--CLILSGLSSLSS 72
             LP S ++      L L+          S  +  +LQ L LS+C    +      SLS 
Sbjct: 24  DNLPFSTKN------LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 73  LKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCKR 127
           L  L L+G+  +SL  G  S L  L+ L  +  N + SL   P      L  LN +    
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL- 135

Query: 128 LQSLP 132
           +QS  
Sbjct: 136 IQSFK 140

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 26/160 (16%), Positives = 45/160 (28%), Gaps = 40/160 (25%)

Query: 4   LQEIDLFLSG--IKELPSSIEHIEGLKCLRLNSCTKLGFLPESL--CNLKKLQKLCLSQC 59
              + L L+G  I  +          + L       L  + + L    ++ L        
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 60  RC------------------LILSG----------LSSLSSLKCLELSGHNFESLPTGIS 91
                               + L                S L+ L+L+  +   LP+G+ 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 92  QLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
            L  LK L L   N   +L ++         S+   L  L
Sbjct: 299 GLSTLKKLVLSA-NKFENLCQISA-------SNFPSLTHL 330

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-- 60
           L  + L  + +  +  +     + LK L              L N K L+ L L      
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHL-INCNMIRSLPELPFCLN 118
            + L        LK L+   +    L    +S LQ+   L L +N N I  +    F   
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 119 YLNT 122
              +
Sbjct: 203 VFQS 206

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCR-- 60
           LQE+DL  + + ELPS +  +  LK L L++  K   L + S  N   L  L +      
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 61  -CLILSGLSSLSSLKCLELSG---HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC 116
             L    L +L +L+ L+LS       +     +  L  L+ L+L   N   SL    F 
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAF- 396

Query: 117 LNYLNTSDCKRLQSL 131
                  +C +L+ L
Sbjct: 397 ------KECPQLELL 405

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 4   LQEIDLFLSGIKEL--PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR- 60
           L+ +DL  + +K     S  +++  LK L L+         +    L  LQ L L     
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 61  ----CLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPF 115
                   + L +L  L+ L LS  +  S+     + L+ +  + L + N + S      
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL-SHNRLTSSSIEAL 520

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 16/147 (10%)

Query: 1   MELLQEIDL---FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS 57
           +E L+E+DL    +         + ++  L+ L L+    L    E+     +L+ L L+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 58  QCR---CLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPEL 113
             R       S   +L  LK L LS    +     +   L  L+ L+L   N        
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG-NHFPKGNIQ 467

Query: 114 PFC-------LNYLNTSDCKRLQSLPK 133
                     L  L  S C  L S+ +
Sbjct: 468 KTNSLQTLGRLEILVLSFC-DLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 17  LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR--CLILSGLSSLSSLK 74
           LP+S E +E       N    +     +   L  L  L L++C+   +      S   L 
Sbjct: 31  LPNSTECLE----FSFNVLPTI--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 75  CLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCKRLQ 129
            L L+ +    +     S  + LK L  I    I S+  +P      L  L       + 
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSN-HIS 142

Query: 130 SLP 132
           S+ 
Sbjct: 143 SIK 145

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 16/135 (11%)

Query: 4   LQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCR 60
           L+ +D   S +K++        +  L  L ++               L  L+ L ++   
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 61  CL--ILSG-LSSLSSLKCLELSGHNFESLPTGISQ-LQRLKCLHLINCNMIRSLPELPFC 116
                L    + L +L  L+LS    E L       L  L+ L++ + N   SL   P+ 
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPY- 219

Query: 117 LNYLNTSDCKRLQSL 131
                      LQ L
Sbjct: 220 ------KCLNSLQVL 228

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 15/138 (10%)

Query: 5   QEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
            EI     G+  +P+ I      L+ L  N    L         L +L KL LS      
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLE-LESNKLQSLP--HGVFDKLTQLTKLSLSSNGLSF 66

Query: 64  LS----GLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF---- 115
                      +SLK L+LS +   ++ +    L++L+ L     + ++ + E       
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFLSL 125

Query: 116 -CLNYLNTSDCKRLQSLP 132
             L YL+ S     +   
Sbjct: 126 RNLIYLDISHT-HTRVAF 142

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 10  FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSS 69
           +      LP+       ++ +       +    + +  L+ ++K+ L +C  +    L  
Sbjct: 46  WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER 105

Query: 70  LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMI--RSLPELPFC--LNYLNTSDC 125
           LS L+ L+ S                +  + +I+C  +  + +  L     L YL  SD 
Sbjct: 106 LSQLENLQKS----------------MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149

Query: 126 KRLQSLPKISSCLET 140
             ++   KI    +T
Sbjct: 150 PGVKEKEKIVQAFKT 164

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEG---LKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQC 59
           L+ + L ++ +KEL    E       L+ L ++  +      +  C   K L  L +S  
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 60  RCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNY 119
                        +K L+L  +  +S+P  + +L+ L+ L++ + N ++S+P+  F    
Sbjct: 410 ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIF---- 464

Query: 120 LNTSDCKRLQSL 131
                   LQ +
Sbjct: 465 ---DRLTSLQKI 473

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 17  LPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCLILSG--LSSLSSL 73
           LPS    ++    L  N+ ++L    E +   L  L  L LS      +S      + +L
Sbjct: 37  LPSYTALLD----LSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 74  KCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCKRL 128
           + L+LS ++  +L   + S LQ L+ L L   N I  +    F     L  L  S   ++
Sbjct: 91  RYLDLSSNHLHTLDEFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQN-QI 148

Query: 129 QSLP 132
              P
Sbjct: 149 SRFP 152

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR- 60
           L+ +++  + +  +       +  L+ L L  C  L  +P E+L +L  L  L L     
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 61  -CLILSGLSSLSSLKCLELSGHNF-ESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLN 118
             +       L  LK LE+S   + +++         L  L + +CN + ++P L     
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAV--- 244

Query: 119 YLNTSDCKRLQSL 131
                    L+ L
Sbjct: 245 ----RHLVYLRFL 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRC 61
           L+E++L  + +  +      ++  L+ L L S  +L  +P      L  L KL +S+ + 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKI 116

Query: 62  LILSG--LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC 116
           +IL       L +LK LE+  ++   +     S L  L+ L L     + S+P     
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL-EKCNLTSIPTEALS 173

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 60/378 (15%), Positives = 105/378 (27%), Gaps = 123/378 (32%)

Query: 1   MELLQ----EIDLFLSGIKELPSSIEH-IEGLKCLRLNSCTKLGFLPESL------CNLK 49
           +E+LQ    +ID   +   +  S+I+  I  ++   L    K       L       N K
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 50  KLQKLCLSQCRCLILSGLSS----LSSLK----CLELSGHNF---ES-------LPTGIS 91
                 L  C+ L+ +        LS+       L+         E        L     
Sbjct: 258 AWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 92  QLQRLKC-LHLINCNMI-RSLPELPFCLNYLNTSDCKRLQSLPKISSCLET-PSNQTRG- 147
            L R     +    ++I  S+ +     +     +C +L ++  I S L      + R  
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNVLEPAEYRKM 374

Query: 148 ---------NSYLP--------------VMFKFVNCVKLHKGT--ERNFFANFQRRVHNA 182
                    ++++P               +   VN  KLHK +  E+      +  +   
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQ---PKESTIS-- 427

Query: 183 LPGI-------------LHRKETDRRRGI-SICLRGSGIPHC---WFRTQSLGSSITIQL 225
           +P I             LHR   D      +        P+    ++             
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY------------- 474

Query: 226 PRRCCNKNFIGFALCAVIEFVADESSF------FHF--------NVSCKYGSDHSFLLVD 271
                  + IG  L   IE     + F      F F        + +          L  
Sbjct: 475 -------SHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 272 SMSVYSNHVILGFDPLLE 289
            +  Y  + I   DP  E
Sbjct: 527 -LKFYKPY-ICDNDPKYE 542

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 19  SSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCL 76
           +   +    + L L       +  L      L +   +  S      L G   L  LK L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGA---TLDQFDAIDFSDNEIRKLDGFPLLRRLKTL 69

Query: 77  ELSGHNFESLPTGISQ-LQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
            ++ +    +  G+ Q L  L  L L N N +  L +    L+ L  +  K L  L
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGD----LDPL--ASLKSLTYL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 27  LKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESL 86
                  +         S   L  L  L         ++G+  L+ L  L  + +N  +L
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 87  PTGISQLQRLKCLHLINCNMIRSLPELPFC-LNYLNTSDCKRLQSLP 132
              +SQ   L  L   + N + +L   P   L YLN    K L  L 
Sbjct: 80  D--LSQNTNLTYLACDS-NKLTNLDVTPLTKLTYLNCDTNK-LTKLD 122

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 10/130 (7%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L  +D   + I EL   +   + L  L  ++   +  L   L    +L  L  S  + L 
Sbjct: 172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNK-LT 225

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC-LNYLNT 122
              ++ L+ L   + S +    L   +S L +L  LH I    +  +       L Y   
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQ-TDLLEIDLTHNTQLIYFQA 282

Query: 123 SDCKRLQSLP 132
             C++++ L 
Sbjct: 283 EGCRKIKELD 292

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L   D  ++ + EL  S   +  L  L       L  +   L +  +L       CR + 
Sbjct: 235 LTYFDCSVNPLTELDVS--TLSKLTTLHCIQT-DLLEID--LTHNTQLIYFQAEGCRKIK 289

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF-CLNYLNT 122
              ++  + L  L+        L   +SQ  +L  L+L N   +  L       L  L+ 
Sbjct: 290 ELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYL-NNTELTELDVSHNTKLKSLSC 346

Query: 123 SDCKRLQSLPKISSC 137
            +   +Q    +   
Sbjct: 347 VNAH-IQDFSSVGKI 360

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRC 61
           L+ + +  + ++ LP  + + +  L  LRL+   +L  LP  +  +L KL  L L     
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNE- 144

Query: 62  LILSGLS-----SLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPF 115
             L  L       L+SLK L L  +  + +P G   +L  LK L L N N ++ +PE  F
Sbjct: 145 --LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAF 201

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRL--NSCTKLGFLP-ESLCNL-KKLQKLCLSQC 59
           LQ + L  +G+K         + +  L     S   L     +  C   + +  L LS  
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 60  RCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNY 119
                        +K L+L  +   S+P  ++ LQ L+ L++ + N ++S+P+  F    
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVF---- 493

Query: 120 LNTSDCKRLQSL 131
                   LQ +
Sbjct: 494 ---DRLTSLQYI 502

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 9   LFLSG---IKELPSSI-EHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCLI 63
           L LS    ++ +  +    +  L  L L+ C  L  L       L  LQ L L       
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 64  LSG--LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
           L       L +L  L L G+   S+P      L  L  L L   N +  +    F     
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ-NRVAHVHPHAF----- 197

Query: 121 NTSDCKRLQSL 131
              D  RL +L
Sbjct: 198 --RDLGRLMTL 206

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 13  GIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR--CLILSGLSS 69
           G  +    +   E L  L + +   L  L    L  L +L+ L + +     +       
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 70  LSSLKCLELSGHNFESLPTGISQLQRLKCLHL 101
              L  L LS +  ESL     Q   L+ L L
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRC 61
           LQ ++L  + + EL SS    +  +  + L     +  + + +   L+KLQ L L     
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA- 373

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLN--- 118
             L+ +  + S+  + LSG+   +LP        +        N + +L  L F L    
Sbjct: 374 --LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE----NRLENLDILYFLLRVPH 427

Query: 119 --YLNTSDCKRLQSLPKISSCLETPS 142
              L  +   R  S     +  E PS
Sbjct: 428 LQILILNQN-RFSSCSGDQTPSENPS 452

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 1   MELLQEIDLFLSGIKEL--PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ 58
           +E LQ ++L            +  ++  L+ L L S       P++   L  L +L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 59  CR----CLILSGLSSLSSLKCLELSGHNFESLPTG--ISQLQRLKCLHLINCNMIRSLPE 112
           C      L      +L +L  L+LS +   SL       +L  LK +   + N I  + E
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCE 165

Query: 113 LPF 115
              
Sbjct: 166 HEL 168

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 18/121 (14%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 4   LQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRC 61
           L+E+++  S ++     S++ I+ +  L L+   +   L E  +     ++ L L     
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDL 234

Query: 62  ----------LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111
                        + L    + + ++++  +   +   ++Q+  L  L     N ++S+P
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVP 293

Query: 112 E 112
           +
Sbjct: 294 D 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.58
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.57
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.54
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.53
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.52
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.52
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.52
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.48
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.48
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.47
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.47
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.45
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.45
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.44
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.43
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.42
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.4
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.35
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.35
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.34
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.01
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.74
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.55
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.89
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.59
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.56
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.3
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.92
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.5

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=7.2e-18  Score=151.72  Aligned_cols=131  Identities=30%  Similarity=0.478  Sum_probs=76.7

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCC---------C
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLS---------S   69 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~---------~   69 (290)
                      +++|++|+|++|.++.+|..++.+++|++|++++|.+. .+|..++++++|++|++++|..+.  +..++         .
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            35677777777777777776777777777777776554 667667777777777777765433  22222         2


Q ss_pred             CCCCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCC
Q 022917           70 LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        70 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~  133 (290)
                      +++|+.|++++|.++.+|..++++++|+.|++++|.. ..+|..   +++|+.|++++|...+.+|.
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCEEECcCCcchhhhHH
Confidence            5555555555555555555555555555555555442 233332   24455555555555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=6.8e-17  Score=145.30  Aligned_cols=121  Identities=21%  Similarity=0.285  Sum_probs=65.1

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n   81 (290)
                      +++.|+|++|.++.+|+.++.+++|++|++++|.+. .+|..++++++|++|++++|.... +..++.+++|++|++++|
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            455556666555555555555566666666555443 555555555666666666554332 234555555666666655


Q ss_pred             cC-CccChhhcC---------CccccEEecccCcCCccCCCC---Ccccceeccccc
Q 022917           82 NF-ESLPTGISQ---------LQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDC  125 (290)
Q Consensus        82 ~l-~~lp~~l~~---------l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c  125 (290)
                      ++ ..+|..+..         +++|+.|++++|. +..+|..   +++|+.|++++|
T Consensus       161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESS
T ss_pred             CCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCC
Confidence            43 355544433         5556666665554 3355542   245555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.9e-15  Score=124.67  Aligned_cols=127  Identities=23%  Similarity=0.252  Sum_probs=109.6

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS   79 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls   79 (290)
                      ++|+.|++++|.++++| .+..+++|++|++++|.. ..+ ..+..+++|++|++++|....  +..++.+++|+.|+++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            57999999999999999 699999999999999843 444 478899999999999998654  7889999999999999


Q ss_pred             CccCC-ccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCCC
Q 022917           80 GHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        80 ~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l~  132 (290)
                      +|.++ ..|..+..+++|+.|++++|..++.+|.+  +++|+.|++++|. +..++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~  175 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR  175 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH
Confidence            99998 47788999999999999999877878753  5789999999874 55555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=1.4e-14  Score=123.53  Aligned_cols=125  Identities=23%  Similarity=0.301  Sum_probs=78.5

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCcc
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n~   82 (290)
                      +.++.+++.++.+|..+.  ++|++|++++|.+.+..|..+..+++|+.|+|++|....+  ..++.+++|+.|+|++|.
T Consensus        22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            356666666766766543  6677777777666665566666777777777777764332  335666777777777777


Q ss_pred             CCccChh-hcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCC
Q 022917           83 FESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        83 l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++.+|.. +..+++|+.|++++|. +..+|..   +++|+.|+++++ .+..++.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~  152 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPH  152 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCT
T ss_pred             CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCH
Confidence            7666543 4667777777777655 4466643   356677777664 4455543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=1.5e-14  Score=122.57  Aligned_cols=126  Identities=26%  Similarity=0.318  Sum_probs=80.2

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCcc
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~   82 (290)
                      +.++++++.++++|..+.  ++|+.|++++|.+.+..+..+..+++|+.|+|++|....  +..+..+++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            356667777777776554  567777777766555444566677777777777776433  3566777777777777777


Q ss_pred             CCccChh-hcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCC
Q 022917           83 FESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        83 l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++.+|.. +..+++|+.|++++|......|..   +++|+.|++++| .++.++.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  145 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAK  145 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECH
Confidence            7766654 466777777777776643333332   356777777664 3444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.58  E-value=2.4e-14  Score=123.51  Aligned_cols=130  Identities=27%  Similarity=0.372  Sum_probs=109.7

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      ++|+.|+|++|.++++++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|....  +..++.+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            468999999999999655 58999999999999998887777778999999999999998554  346789999999999


Q ss_pred             eCccCCccChh-hcCCccccEEecccCcCCccCCC-C---CcccceeccccccccCCCCC
Q 022917           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++|.++.+|.. +..+++|+.|++++|. ++.+|. .   +++|+.|++++| .+..++.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  172 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH  172 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCH
Confidence            99999988765 5889999999999986 555654 2   478999999986 4555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.57  E-value=7e-14  Score=121.84  Aligned_cols=102  Identities=24%  Similarity=0.306  Sum_probs=50.5

Q ss_pred             ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917            3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS   79 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls   79 (290)
                      +|++|++++|.++++|. .+..+++|++|++++|.+....+..+.++++|++|++++|....  +..+..+++|+.|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            45666666666666543 35556666666666654432222233455566666665555322  1223444455555555


Q ss_pred             CccCCccCh-hhcCCccccEEecccC
Q 022917           80 GHNFESLPT-GISQLQRLKCLHLINC  104 (290)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~c  104 (290)
                      +|.++.+|. .+..+++|+.|++++|
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCC
Confidence            555443332 2344444444444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.57  E-value=6.4e-14  Score=122.32  Aligned_cols=130  Identities=23%  Similarity=0.326  Sum_probs=90.5

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      +++|++|++++|.+++++ .++.+++|++|++++|.+.+..+..+.++++|++|++++|.....  ..++.+++|++|++
T Consensus        62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            467778888887777764 477778888888888776655555567788888888888774442  33677788888888


Q ss_pred             eCccCCccChh-hcCCccccEEecccCcCCccCCC-C---CcccceeccccccccCCCCC
Q 022917           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++|.++.+|.. +..+++|+.|++++|+.. .+|. .   +++|+.|++++|. +..++.
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~  198 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ-LKSVPD  198 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc-CCccCH
Confidence            88888766654 577888888888887644 4443 2   4678888887764 444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.56  E-value=9.1e-15  Score=121.62  Aligned_cols=123  Identities=16%  Similarity=0.145  Sum_probs=106.7

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      +++|++|++++|.++.++ .+..+++|++|++++|.+.+..|..++.+++|++|++++|....  +..++.+++|+.|++
T Consensus        65 l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           65 AHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             CTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            578999999999888776 58999999999999999887788899999999999999998655  677889999999999


Q ss_pred             eCcc-CCccChhhcCCccccEEecccCcCCccCCCC--Ccccceecccccc
Q 022917           79 SGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK  126 (290)
Q Consensus        79 s~n~-l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~  126 (290)
                      ++|. ++.+| .+..+++|+.|++++|. +..++.+  +++|+.|++++++
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence            9998 88888 79999999999999987 5556542  5789999998754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=3.8e-14  Score=125.21  Aligned_cols=132  Identities=27%  Similarity=0.275  Sum_probs=112.1

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      +++|++|+|++|.|++++.. +.+++|++|++++|.+ ..+|..+..+++|++|++++|....  +..++.+++|+.|++
T Consensus        54 l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (290)
T ss_dssp             CTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence            57899999999999998774 8899999999999765 5789889999999999999998555  356899999999999


Q ss_pred             eCccCCccChh-hcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCCCCCC
Q 022917           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      ++|.++.+|.. +..+++|+.|++++|. ++.+|..    +++|+.|++++| .++.+|....
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~  192 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF  192 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhc
Confidence            99999988765 5789999999999977 5677752    478999999885 5777776544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=5.9e-14  Score=122.52  Aligned_cols=127  Identities=24%  Similarity=0.270  Sum_probs=106.4

Q ss_pred             CCceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.++++|+. ++.+++|++|++++|.+.+..|..++.+++|++|++++|.....  ..++.+++|+.|+
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence            57899999999999997765 78999999999999988766666688999999999999975543  3478999999999


Q ss_pred             eeCccCCccChh-hcCCccccEEecccCcCCccCCCC---Ccccceeccccccc
Q 022917           78 LSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKR  127 (290)
Q Consensus        78 Ls~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~  127 (290)
                      +++|.++.+|.. ++.+++|+.|++++|...+..|..   +++|+.|++++|+.
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            999999977754 689999999999998855544432   47899999988743

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.55  E-value=2.9e-15  Score=133.65  Aligned_cols=127  Identities=17%  Similarity=0.261  Sum_probs=99.3

Q ss_pred             CCceeEEEccc-CCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEE
Q 022917            1 MELLQEIDLFL-SGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCL   76 (290)
Q Consensus         1 l~~L~~L~L~~-~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L   76 (290)
                      +++|++|++++ |.+++ +|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|....  +..++.+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            46788888885 77775 78888888888888888888877888888888888888888887442  5567788888888


Q ss_pred             EeeCccCC-ccChhhcCCc-cccEEecccCcCCccCCCCC--cccceeccccccc
Q 022917           77 ELSGHNFE-SLPTGISQLQ-RLKCLHLINCNMIRSLPELP--FCLNYLNTSDCKR  127 (290)
Q Consensus        77 ~Ls~n~l~-~lp~~l~~l~-~L~~L~l~~c~~l~~lp~~~--~~L~~L~l~~c~~  127 (290)
                      ++++|.++ .+|..+..++ +|+.|++++|...+.+|..+  ..|+.|++++|.-
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l  209 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcc
Confidence            88888887 7888888887 88888888887666666542  1277777777643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.55  E-value=8.1e-14  Score=116.60  Aligned_cols=117  Identities=26%  Similarity=0.342  Sum_probs=55.9

Q ss_pred             EEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCccC
Q 022917            6 EIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGHNF   83 (290)
Q Consensus         6 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n~l   83 (290)
                      .++.+++.++++|..+  .++|++|++++|.+.+..+..+..+++|++|++++|....+  ..++.+++|++|++++|.+
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            3445555555555433  23555555555544433333344555555555555543322  1244555555555555555


Q ss_pred             CccChh-hcCCccccEEecccCcCCccCCC----CCcccceeccccc
Q 022917           84 ESLPTG-ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC  125 (290)
Q Consensus        84 ~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c  125 (290)
                      +.+|.. +.++++|+.|++++|. +..+|.    .+++|+.|+++++
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC
Confidence            544432 3455555555555544 223332    1245555555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.55  E-value=1.3e-13  Score=118.95  Aligned_cols=127  Identities=26%  Similarity=0.282  Sum_probs=104.2

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeC
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSG   80 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~   80 (290)
                      +.++++++++.++++|..+.  ++|+.|++++|.+.+..|..+.++++|++|++++|....  +..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            45789999999999998765  689999999998887777789999999999999998554  34578899999999999


Q ss_pred             ccCCccCh-hhcCCccccEEecccCcCCccCCC-C---CcccceeccccccccCCCCC
Q 022917           81 HNFESLPT-GISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        81 n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~l~~  133 (290)
                      |.++.+|. .+..+++|+.|++++|. +..+|. .   +++|+.|++++| .++.++.
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~  148 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPA  148 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCH
Confidence            99997764 56889999999999986 455554 2   578999999886 5666665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.2e-14  Score=117.52  Aligned_cols=128  Identities=28%  Similarity=0.371  Sum_probs=105.0

Q ss_pred             CceeEEEcccCCCc--ccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCC-CCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSG-LSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~-l~~l~~L~~L~   77 (290)
                      ++|++|++++|.++  .+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.... ++. ++.+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            57999999999998  7998889999999999999886544  678899999999999998655 333 34589999999


Q ss_pred             eeCccCCccC--hhhcCCccccEEecccCcCCccCCC-------CCcccceeccccccccCCCCC
Q 022917           78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-------LPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        78 Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~-------~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      +++|.++.+|  ..+..+++|+.|++++|. +..+|.       .+++|+.|++++|. +..+|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence            9999999876  688999999999999987 455554       25789999998874 444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.55  E-value=3.3e-14  Score=119.02  Aligned_cols=129  Identities=26%  Similarity=0.317  Sum_probs=103.5

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++|++|++++|.++++|.. ++.+++|++|++++|.+.+..+..+..+++|++|++++|....+  ..++.+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            5789999999999997765 68899999999999877655455578899999999999985543  34788999999999


Q ss_pred             eCccCCccChh-hcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCC
Q 022917           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSL  131 (290)
Q Consensus        79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l  131 (290)
                      ++|.++.+|.. +.++++|+.|++++|.. ..+|..    +++|+.|++++++.....
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCeecCC
Confidence            99999988764 68899999999999874 455542    478999999887544443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=3.3e-14  Score=120.54  Aligned_cols=124  Identities=17%  Similarity=0.170  Sum_probs=92.9

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCc
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n   81 (290)
                      +.++++++.++++|..+.  ..++.|++++|.+.+..| ..+..+++|+.|++++|....  +..++.+++|++|+|++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            478888888888887664  456889999887765544 346788899999998887544  346888889999999999


Q ss_pred             cCCccCh-hhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCC
Q 022917           82 NFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSL  131 (290)
Q Consensus        82 ~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l  131 (290)
                      .++.+|. .+..+++|+.|++++|......|..   +++|+.|++++| .++.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  144 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTV  144 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCB
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEE
Confidence            9887765 4788889999999888755544543   467888888885 44444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.54  E-value=1.1e-14  Score=129.86  Aligned_cols=133  Identities=20%  Similarity=0.277  Sum_probs=94.7

Q ss_pred             CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCC-CCcEEeccCCCCCC--cCCCCCCCCCCEE
Q 022917            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLK-KLQKLCLSQCRCLI--LSGLSSLSSLKCL   76 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~l~--~~~l~~l~~L~~L   76 (290)
                      +++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..++.++ +|+.|++++|....  +..++.++ |+.|
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence            4688999999999884 888899999999999999888778888888888 89999999887432  44455554 7777


Q ss_pred             EeeCccCC-ccChhhcCCccccEEecccCcCCccCCC--CCcccceeccccccccCCCCCC
Q 022917           77 ELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        77 ~Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      ++++|.++ ..|..+..+++|+.|++++|...+.+|.  .+++|+.|++++|.-.+.+|..
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  263 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence            77777665 4555666666777777766665444443  2356666666665544345543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.54  E-value=1.4e-14  Score=144.23  Aligned_cols=137  Identities=23%  Similarity=0.231  Sum_probs=111.9

Q ss_pred             CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----------------
Q 022917            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----------------   63 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----------------   63 (290)
                      +++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|....                
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence            4789999999999985 88889999999999999999988999999999999999999886321                


Q ss_pred             --------------------------------------------------------cCCCCCCCCCCEEEeeCccCC-cc
Q 022917           64 --------------------------------------------------------LSGLSSLSSLKCLELSGHNFE-SL   86 (290)
Q Consensus        64 --------------------------------------------------------~~~l~~l~~L~~L~Ls~n~l~-~l   86 (290)
                                                                              +..++.+++|+.|++++|.++ .+
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence                                                                    123455678888888888887 78


Q ss_pred             ChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCC
Q 022917           87 PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSC  137 (290)
Q Consensus        87 p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~  137 (290)
                      |..++++++|+.|++++|...+.+|+.   +++|+.|++++|.-.+.+|.....
T Consensus       649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence            888888888888888888888888864   467888888887766677765543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=3.6e-14  Score=121.35  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=66.9

Q ss_pred             ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccC-CCCCC--cCCCCCCCCCCEEE
Q 022917            3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQ-CRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~-~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +|++|++++|.++++|+ .++.+++|++|++++|..++.+| ..+.++++|++|++++ |....  +..+..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56667777777766655 46666777777777665333333 3556666777777766 44222  23345556666666


Q ss_pred             eeCccCCccChhhcCCcccc---EEecccCcCCccCCCC----Ccccc-eecccc
Q 022917           78 LSGHNFESLPTGISQLQRLK---CLHLINCNMIRSLPEL----PFCLN-YLNTSD  124 (290)
Q Consensus        78 Ls~n~l~~lp~~l~~l~~L~---~L~l~~c~~l~~lp~~----~~~L~-~L~l~~  124 (290)
                      +++|.++.+|. +..+++|+   .|++++|..++.+|..    +++|+ .|++++
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~  165 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN  165 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence            66666555554 44555554   5555555234444431    23445 555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.54  E-value=2.1e-14  Score=142.90  Aligned_cols=138  Identities=20%  Similarity=0.238  Sum_probs=119.8

Q ss_pred             CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|....  +..++.+++|+.|+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            4789999999999996 88899999999999999999999999999999999999999998543  67889999999999


Q ss_pred             eeCccCC-ccChhh------------------------------------------------------------------
Q 022917           78 LSGHNFE-SLPTGI------------------------------------------------------------------   90 (290)
Q Consensus        78 Ls~n~l~-~lp~~l------------------------------------------------------------------   90 (290)
                      +++|.++ .+|..+                                                                  
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            9999976 666543                                                                  


Q ss_pred             ----cCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCCCCC
Q 022917           91 ----SQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCL  138 (290)
Q Consensus        91 ----~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~~~  138 (290)
                          +.+++|+.|++++|+..+.+|..   ++.|+.|++++|.-.+.+|.....+
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence                33577999999999988899975   4789999999988777888766544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.54  E-value=3.6e-14  Score=126.28  Aligned_cols=118  Identities=24%  Similarity=0.322  Sum_probs=59.2

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~   82 (290)
                      +|++|+++++.++++| .+..+++|++|++++|.+. .++. +..+++|++|++++|....++.++.+++|+.|++++|.
T Consensus        42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC
T ss_pred             CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC
Confidence            4555555555555554 3555555555555555432 2333 55555555555555554444445555555555555555


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCCC--Ccccceeccccc
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDC  125 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c  125 (290)
                      ++.+|. +..+++|+.|++++|. +..++.+  +++|+.|++++|
T Consensus       119 l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          119 ITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNA  161 (308)
T ss_dssp             CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCC
Confidence            554442 4555555555555543 2223221  234455555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.53  E-value=1.4e-13  Score=120.70  Aligned_cols=123  Identities=24%  Similarity=0.219  Sum_probs=72.0

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~   77 (290)
                      ++|++|++++|.++++|. .+..+++|++|++++|.+.+..|..+.++++|++|++++|..++   +..++.+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            356667777776666553 36666677777776666555556666666666777666665222   34455666666666


Q ss_pred             eeCccCCcc-ChhhcCCccccEEecccCcCCccCCC----CCcccceeccccc
Q 022917           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC  125 (290)
Q Consensus        78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c  125 (290)
                      +++|.++.+ |..+.++++|+.|++++|.. ..+|.    .+++|+.|++++|
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCC
Confidence            666666544 34455666666666666543 23332    1345666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.53  E-value=9.2e-14  Score=129.88  Aligned_cols=130  Identities=22%  Similarity=0.328  Sum_probs=95.7

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      ++|++|+|++|.|+.+ |..+..+++|+.|++++|.+.+..|..+.++++|++|+|++|....  +..++.+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            4688899999888885 5568888899999999888777667788888889999998887444  234777888888888


Q ss_pred             eCccCCccCh-hhcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCC
Q 022917           79 SGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        79 s~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~  132 (290)
                      ++|.++.+|. .+.++++|+.|++++|+.++.++..    +++|+.|++++| .+..+|
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~  212 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP  212 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc
Confidence            8888887765 5677777777777777666666642    355666666554 333343

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=7.9e-14  Score=123.13  Aligned_cols=119  Identities=29%  Similarity=0.316  Sum_probs=72.5

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|+.|++++|.+++++. +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|....++.++.+++|+.|++++|
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN  122 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred             CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC
Confidence            356667777766666654 6666777777777665543 333 6666667777776666555555666666666666666


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCCC--Ccccceeccccc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDC  125 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c  125 (290)
                      .++.++ .+..+++|+.|++++|. +..++.+  +++|+.|++++|
T Consensus       123 ~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          123 GISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             CCCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred             cCCCCh-hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC
Confidence            666653 45666666666666654 3333322  355666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.52  E-value=3.5e-14  Score=126.36  Aligned_cols=127  Identities=18%  Similarity=0.277  Sum_probs=109.2

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++|++|++++|.+++++. +..+++|++|++++|.+. .+| .+..+++|+.|++++|....++.++.+++|+.|++++
T Consensus        62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence            5789999999999999988 999999999999998754 455 6889999999999999977777799999999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCC--CCcccceeccccccccCCCCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      |.++.++. +..+++|+.|++++|. +..++.  .+++|+.|++++| .+..++.
T Consensus       139 n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~  190 (308)
T 1h6u_A          139 NQITNISP-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDN-KISDISP  190 (308)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG
T ss_pred             CccCcCcc-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCC-ccCcChh
Confidence            99998885 8999999999999986 555554  3578999999886 4555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.52  E-value=5.9e-14  Score=124.22  Aligned_cols=124  Identities=23%  Similarity=0.256  Sum_probs=60.5

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCC-------------------------CCCCcCccccCCCCCCcEEec
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC-------------------------TKLGFLPESLCNLKKLQKLCL   56 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~-------------------------~~l~~lp~~i~~l~~L~~L~L   56 (290)
                      ++|++|++++|.++++|..+..+++|++|++++|                         ...+..|..+..+++|++|++
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            4455555555555555554555555555555554                         443333444444444444444


Q ss_pred             cCCCCCC---cCCCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCC----CCcccceecccccc
Q 022917           57 SQCRCLI---LSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCK  126 (290)
Q Consensus        57 s~~~~l~---~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~  126 (290)
                      ++|....   +..++.+++|+.|++++|.++.+ |..+..+++|+.|++++|.. ..++.    .+++|+.|++++|.
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSC
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCC
Confidence            4444221   33445555555555555555533 34455555555555555442 22222    12455555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.52  E-value=1.2e-13  Score=121.16  Aligned_cols=126  Identities=22%  Similarity=0.284  Sum_probs=100.1

Q ss_pred             CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEE
Q 022917            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCL   76 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L   76 (290)
                      +++|++|++++|.++++ |..+..+++|++|++++|..++.+ |..+..+++|++|++++|....  +..++.+++|++|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            46899999999999886 667889999999999998744555 6778889999999999987544  3557888899999


Q ss_pred             EeeCccCCccCh-hhcCCccccEEecccCcCCccCCC----CCcccceeccccccc
Q 022917           77 ELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKR  127 (290)
Q Consensus        77 ~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~  127 (290)
                      ++++|.++.+|. .++++++|+.|++++|. +..+|.    .+++|+.|++++|.-
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcc
Confidence            999999887765 47888899999998876 445553    246788888888653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.52  E-value=1.6e-13  Score=119.60  Aligned_cols=132  Identities=23%  Similarity=0.316  Sum_probs=110.3

Q ss_pred             CCceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.++++|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|....  +..++.+++|++|+
T Consensus        60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence            57899999999999998877 5889999999999988766555667899999999999998554  34578999999999


Q ss_pred             eeCccCCccChh-hcCCccccEEecccCcCCccCCC-C---CcccceeccccccccCCCCCC
Q 022917           78 LSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        78 Ls~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      +++|.++.+|.. +..+++|+.|++++|. +..+|. .   +++|+.|++++| .++.++..
T Consensus       140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  199 (270)
T 2o6q_A          140 LGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG  199 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             CCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHH
Confidence            999999988765 7899999999999987 455554 2   478999999987 56666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.52  E-value=1.7e-13  Score=128.12  Aligned_cols=132  Identities=27%  Similarity=0.346  Sum_probs=77.5

Q ss_pred             CCceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCC-------------------------CCCCcEE
Q 022917            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCN-------------------------LKKLQKL   54 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~-------------------------l~~L~~L   54 (290)
                      +++|++|+|++|.++.+|+. +..+++|++|++++|.+....+..+.+                         +++|+.|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            35666777777666665554 566666666666665544332333444                         4455555


Q ss_pred             eccCCCCCCcCCCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCC
Q 022917           55 CLSQCRCLILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQS  130 (290)
Q Consensus        55 ~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~  130 (290)
                      ++++|....++.+..+++|+.|+|++|.++.+ |..+.++++|+.|++++|......|..   +++|+.|++++| .+..
T Consensus       202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~  280 (452)
T 3zyi_A          202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSS  280 (452)
T ss_dssp             ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred             ECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCc
Confidence            55555444445556666666666766666644 556667777777777776644433332   356777777775 4555


Q ss_pred             CCC
Q 022917          131 LPK  133 (290)
Q Consensus       131 l~~  133 (290)
                      ++.
T Consensus       281 ~~~  283 (452)
T 3zyi_A          281 LPH  283 (452)
T ss_dssp             CCT
T ss_pred             cCh
Confidence            554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.52  E-value=1.4e-14  Score=141.29  Aligned_cols=133  Identities=17%  Similarity=0.290  Sum_probs=108.8

Q ss_pred             CCceeEEEcccCCCcc------------------cCcccc--CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917            1 MELLQEIDLFLSGIKE------------------LPSSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~   60 (290)
                      |++|++|+|++|.+++                  +|+.++  .+++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            5789999999999999                  999999  99999999999999999999999999999999999997


Q ss_pred             CCC----cCCCCCC------CCCCEEEeeCccCCccCh--hhcCCccccEEecccCcCCccCCCC--Ccccceecccccc
Q 022917           61 CLI----LSGLSSL------SSLKCLELSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK  126 (290)
Q Consensus        61 ~l~----~~~l~~l------~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~  126 (290)
                      .++    |..++.+      ++|+.|++++|.++.+|.  .++++++|+.|++++|...+.+|.+  +++|+.|++++|.
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence            332    3444444      888999999988888888  8888888888888888766577732  3567777777753


Q ss_pred             ccCCCCCC
Q 022917          127 RLQSLPKI  134 (290)
Q Consensus       127 ~l~~l~~~  134 (290)
                       +..+|..
T Consensus       365 -l~~lp~~  371 (636)
T 4eco_A          365 -ITEIPAN  371 (636)
T ss_dssp             -EEECCTT
T ss_pred             -cccccHh
Confidence             3355543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=7.8e-14  Score=121.71  Aligned_cols=103  Identities=27%  Similarity=0.299  Sum_probs=49.9

Q ss_pred             ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917            3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS   79 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls   79 (290)
                      +|++|++++|.+++++. .+..+++|++|++++|.+.+..+..+.++++|++|++++|....  +..++.+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            35566666666655444 45555566666666554443333445555555555555554222  2234444444444444


Q ss_pred             CccCCccCh-hhcCCccccEEecccCc
Q 022917           80 GHNFESLPT-GISQLQRLKCLHLINCN  105 (290)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~c~  105 (290)
                      +|.++.++. .++++++|+.|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNL  135 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCc
Confidence            444443332 33444444444444433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.52  E-value=1.5e-13  Score=128.04  Aligned_cols=130  Identities=25%  Similarity=0.319  Sum_probs=86.5

Q ss_pred             CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++++.|+|++|.|+.++ ..+..+++|+.|+|++|.+.+..+..+.++++|++|+|++|....+  ..+..+++|+.|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            35777888888887754 4577788888888888776665566777788888888888764442  34677777777777


Q ss_pred             eCccCCccCh-hhcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCC
Q 022917           79 SGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        79 s~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~  132 (290)
                      ++|.++.+|. .+.++++|+.|++++|+.++.++..    +++|+.|++++| .++.+|
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~  201 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP  201 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc
Confidence            7777776654 4566667777777666656555541    345555555554 334444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.51  E-value=6.6e-14  Score=126.53  Aligned_cols=126  Identities=25%  Similarity=0.247  Sum_probs=101.3

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC--CCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS--GLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--~l~~l~~L~~L~L   78 (290)
                      ++|++|++++|.++++|. .+..+++|++|++++|.+.+..|..+.++++|++|++++|......  .++.+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            468899999999988776 5888999999999998777666777888999999999998755432  2778889999999


Q ss_pred             eCccCCccCh--hhcCCccccEEecccCcCCccCCC----CCcccceeccccccc
Q 022917           79 SGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKR  127 (290)
Q Consensus        79 s~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~  127 (290)
                      ++|.++.+|.  .+.++++|+.|++++|+.++.++.    .+++|+.|++++|.-
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            9999888886  678889999999998866666643    246788888888653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=1.8e-14  Score=128.24  Aligned_cols=132  Identities=24%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             CceeEEEcccCCCcccCccccCC-----CCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----cCCC--CCC
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHI-----EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----LSGL--SSL   70 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l--~~l   70 (290)
                      ++|++|++++|.++++|..++.+     ++|++|++++|.+.+..|..++.+++|++|++++|....    +..+  +.+
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            34444444444444444434333     445555555544444344455555555555555554221    1122  555


Q ss_pred             CCCCEEEeeCccCCccC---hh-hcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCCCC
Q 022917           71 SSLKCLELSGHNFESLP---TG-ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        71 ~~L~~L~Ls~n~l~~lp---~~-l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      ++|++|++++|.++.+|   .. +.++++|+.|++++|...+..|.    .+++|+.|++++| .++.+|..
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~  271 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG  271 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh
Confidence            55666666666555332   11 23455666666666554333321    1355666666654 24455443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.51  E-value=2e-13  Score=127.11  Aligned_cols=131  Identities=22%  Similarity=0.317  Sum_probs=70.6

Q ss_pred             CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCC-----------------
Q 022917            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-----------------   62 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l-----------------   62 (290)
                      +++|++|+|++|.|+++|. .+..+++|++|++++|.+....+..+.++++|+.|++++|..+                 
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            3567777777777777665 3667777777777776654433344555556666666554433                 


Q ss_pred             --------CcCCCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCC
Q 022917           63 --------ILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQS  130 (290)
Q Consensus        63 --------~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~  130 (290)
                              .++.+..+++|+.|+|++|.++.+ |..+.++++|+.|++++|......+..   +++|+.|++++| .++.
T Consensus       191 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~  269 (440)
T 3zyj_A          191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTL  269 (440)
T ss_dssp             ECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCC
T ss_pred             cCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCc
Confidence                    333444444555555555554433 344555555555555554432222221   245666666554 3444


Q ss_pred             CC
Q 022917          131 LP  132 (290)
Q Consensus       131 l~  132 (290)
                      ++
T Consensus       270 ~~  271 (440)
T 3zyj_A          270 LP  271 (440)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=9e-14  Score=139.76  Aligned_cols=124  Identities=19%  Similarity=0.255  Sum_probs=91.3

Q ss_pred             CCceeEEEcccCCCcc------------------cCcccc--CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917            1 MELLQEIDLFLSGIKE------------------LPSSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~   60 (290)
                      |++|++|+|++|.+++                  +|+.++  .+++|++|+|++|.+.+.+|..++++++|+.|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5789999999999998                  999988  99999999999999999999999999999999999997


Q ss_pred             CCC----cC-------CCCCCCCCCEEEeeCccCCccCh--hhcCCccccEEecccCcCCccCCCC--Ccccceeccccc
Q 022917           61 CLI----LS-------GLSSLSSLKCLELSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDC  125 (290)
Q Consensus        61 ~l~----~~-------~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c  125 (290)
                      .++    |.       .+..+++|+.|++++|.++.+|.  .++++++|+.|++++|... .+|.+  +++|+.|++++|
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCC
Confidence            222    11       33344567777777777666666  6666666666666665533 55532  244555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.51  E-value=5.7e-14  Score=135.36  Aligned_cols=125  Identities=28%  Similarity=0.292  Sum_probs=104.8

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      +++++|+|++|.|+++|+ +|..+++|++|+|++|.+.+..|..|.++++|++|+|++|....  +..|+++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            368999999999999875 59999999999999988766556678999999999999998544  345899999999999


Q ss_pred             eCccCCccCh-hhcCCccccEEecccCcCCc-cCCCC---Ccccceecccccc
Q 022917           79 SGHNFESLPT-GISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDCK  126 (290)
Q Consensus        79 s~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~-~lp~~---~~~L~~L~l~~c~  126 (290)
                      ++|+++.+|. .++++++|+.|++++|.... .+|..   +++|++|++++|.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            9999998876 58999999999999987433 34543   4789999998863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=2.9e-14  Score=113.00  Aligned_cols=120  Identities=29%  Similarity=0.352  Sum_probs=98.0

Q ss_pred             CceeEEEcccCCCc--ccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-c-CCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-L-SGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~-~~l~~l~~L~~L~   77 (290)
                      ++|+.|++++|.++  .+|..+..+++|+.|++++|.+.+.  ..++.+++|++|++++|.... + ..++.+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            46899999999998  6998889999999999999876554  678899999999999998554 2 3344589999999


Q ss_pred             eeCccCCccC--hhhcCCccccEEecccCcCCccCCC----C---Ccccceecccc
Q 022917           78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE----L---PFCLNYLNTSD  124 (290)
Q Consensus        78 Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~----~---~~~L~~L~l~~  124 (290)
                      +++|.++.+|  ..+..+++|+.|++++|. +..+|.    .   +++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999765  788999999999999986 555554    1   46788887753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=7.8e-14  Score=134.33  Aligned_cols=117  Identities=18%  Similarity=0.145  Sum_probs=101.7

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~   82 (290)
                      .|+.|+|++|.|+++|. ++.+++|+.|+|++|.+. .+|..++++++|+.|+|++|....++.++.+++|+.|+|++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence            58899999999999998 999999999999998765 8999999999999999999997777789999999999999999


Q ss_pred             CCcc--ChhhcCCccccEEecccCcCCccCCCC------Ccccceec
Q 022917           83 FESL--PTGISQLQRLKCLHLINCNMIRSLPEL------PFCLNYLN  121 (290)
Q Consensus        83 l~~l--p~~l~~l~~L~~L~l~~c~~l~~lp~~------~~~L~~L~  121 (290)
                      ++.+  |..++.+++|+.|++++|...+..|..      +++|+.|+
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            9987  899999999999999998744433322      35566554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.50  E-value=8.5e-14  Score=122.94  Aligned_cols=127  Identities=24%  Similarity=0.302  Sum_probs=108.7

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++|++|++++|.++++++ +..+++|++|++++|.+.+ +| .+..+++|+.|++++|....++.++.+++|+.|++++
T Consensus        67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN  143 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccC
Confidence            5789999999999999887 9999999999999987644 44 4899999999999999877778889999999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCCCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l~~  133 (290)
                      |.++.+ ..+..+++|+.|++++|. +..++.+  +++|+.|++++| .++.++.
T Consensus       144 n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N-~i~~l~~  195 (291)
T 1h6t_A          144 NKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN-HISDLRA  195 (291)
T ss_dssp             SCCCCC-GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCBCGG
T ss_pred             CcCCcc-hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCC-cCCCChh
Confidence            999988 479999999999999987 4444433  478999999986 5566554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.49  E-value=3e-13  Score=117.69  Aligned_cols=124  Identities=23%  Similarity=0.280  Sum_probs=104.3

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++|++|++++|.++++| .+..+++|+.|++++|.+. .+|. +..+++|+.|++++|.....+.+.. ++|+.|++++
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~  115 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDN  115 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCS
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccC
Confidence            468999999999999998 6899999999999998765 4555 8899999999999998666666666 8999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSL  131 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l  131 (290)
                      |.++.+| .+.++++|+.|++++|+ ++.++.+  +++|+.|++++|. +..+
T Consensus       116 N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~-i~~~  165 (263)
T 1xeu_A          116 NELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNE-ITNT  165 (263)
T ss_dssp             SCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSC-CCBC
T ss_pred             CccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCc-Ccch
Confidence            9999887 68999999999999987 5566643  5789999998864 4444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=2e-13  Score=113.42  Aligned_cols=118  Identities=25%  Similarity=0.304  Sum_probs=97.4

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCcc
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~   82 (290)
                      +.++++++.++++|..+.  ++|+.|++++|.+ ..+|..+.++++|+.|++++|....  +..+..+++|+.|+|++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            578899999999998654  6899999999765 5788889999999999999998555  3458899999999999999


Q ss_pred             CCccCh-hhcCCccccEEecccCcCCccCCCC----Ccccceecccccc
Q 022917           83 FESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCK  126 (290)
Q Consensus        83 l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~  126 (290)
                      ++.+|. .+..+++|+.|+|++|. +..+|..    +++|+.|++++++
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence            997765 68899999999999977 5566642    4678888888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.49  E-value=1.4e-13  Score=121.84  Aligned_cols=126  Identities=27%  Similarity=0.363  Sum_probs=106.2

Q ss_pred             CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCC-cCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEE
Q 022917            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLG-FLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCL   76 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L   76 (290)
                      +++|++|++++|.++. .|..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|....  +..++.+++|+.|
T Consensus       125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  204 (306)
T 2z66_A          125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  204 (306)
T ss_dssp             CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence            4689999999999987 45568899999999999988766 578889999999999999998544  4678899999999


Q ss_pred             EeeCccCCccCh-hhcCCccccEEecccCcCCccCCCC----Ccccceecccccc
Q 022917           77 ELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCK  126 (290)
Q Consensus        77 ~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~  126 (290)
                      ++++|.++.++. .+..+++|+.|++++|...+..|..    +++|+.|++++|+
T Consensus       205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            999999997765 6889999999999999876666643    3578888887754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=1.9e-13  Score=115.77  Aligned_cols=125  Identities=15%  Similarity=0.160  Sum_probs=105.7

Q ss_pred             CceeEEEcccCCCcccCc--cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +.+++|+|++|.|+.+++  .+..+++|+.|++++|.+.+..+..+.++++|++|++++|....  +..++.+++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            357899999999999743  38899999999999988877666789999999999999998655  34488999999999


Q ss_pred             eeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---Ccccceecccccc
Q 022917           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK  126 (290)
Q Consensus        78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~  126 (290)
                      |++|.++.+ |..+..+++|+.|++++|...+..|..   +++|+.|++++++
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            999999976 678999999999999998755554654   4678999998864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.48  E-value=3.6e-13  Score=118.87  Aligned_cols=128  Identities=23%  Similarity=0.279  Sum_probs=62.2

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC----------------
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS----------------   65 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~----------------   65 (290)
                      +++++++++++.++++|..+.  ++++.|++++|.+.+..|..+..+++|+.|++++|....+.                
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN   87 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred             CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCC
Confidence            445555555555555554432  45555555555544444444555555555555555433322                


Q ss_pred             -------CCCCCCCCCEEEeeCccCCccC-hhhcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCCC
Q 022917           66 -------GLSSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        66 -------~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~~  133 (290)
                             .+..+++|+.|++++|.++.+| ..+.++++|+.|++++|. ++.+|.    .+++|+.|++++| .++.+|.
T Consensus        88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~  165 (290)
T 1p9a_G           88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPA  165 (290)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCT
T ss_pred             cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC-cCCccCH
Confidence                   3444555555555555555444 234555555555555544 223332    1245555555553 3444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.48  E-value=4.2e-13  Score=125.92  Aligned_cols=133  Identities=26%  Similarity=0.301  Sum_probs=71.6

Q ss_pred             CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----------------
Q 022917            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----------------   63 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----------------   63 (290)
                      +++|++|+|++|.++++ |..+..+++|++|++++|.+.+..+..+.++++|++|++++|....                
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            35566666666666664 4456666666666666655433323335556666666666655322                


Q ss_pred             ----------cCCCCCCCCCCEEEeeCccCCccCh-hhcCCccccEEecccCcCCccCCC---CCcccceeccccccccC
Q 022917           64 ----------LSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE---LPFCLNYLNTSDCKRLQ  129 (290)
Q Consensus        64 ----------~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~---~~~~L~~L~l~~c~~l~  129 (290)
                                +..++.+++|+.|++++|.++.+|. .+.++++|+.|++++|......+.   .+++|+.|++++|..++
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence                      2344555555555555555555443 355555555555555543222221   13456666666665555


Q ss_pred             CCCC
Q 022917          130 SLPK  133 (290)
Q Consensus       130 ~l~~  133 (290)
                      .++.
T Consensus       215 ~~~~  218 (477)
T 2id5_A          215 TMTP  218 (477)
T ss_dssp             EECT
T ss_pred             ccCc
Confidence            5544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=1.1e-13  Score=112.96  Aligned_cols=121  Identities=17%  Similarity=0.188  Sum_probs=93.8

Q ss_pred             CceeEEEcccCCCcccCccccCCC-CCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC-C-CCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIE-GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS-G-LSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~-~-l~~l~~L~~L~L   78 (290)
                      .+|+.|++++|.++++|. +..+. +|++|++++|.+.+ + ..+..+++|++|++++|....++ . ++.+++|+.|++
T Consensus        19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            578999999999988865 55554 89999999987654 3 57888999999999999754432 3 377889999999


Q ss_pred             eCccCCccCh--hhcCCccccEEecccCcCCccCCCC-------Ccccceecccccc
Q 022917           79 SGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL-------PFCLNYLNTSDCK  126 (290)
Q Consensus        79 s~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~-------~~~L~~L~l~~c~  126 (290)
                      ++|.++.+|.  .+..+++|+.|++++|. +..+|..       +++|+.|+++++.
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999988887  78889999999999877 4566652       3567777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.48  E-value=7.8e-13  Score=112.63  Aligned_cols=124  Identities=24%  Similarity=0.232  Sum_probs=104.1

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++|++|+|++|.|+++ |..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|....+  ..+..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            5799999999999996 66699999999999999887444445578999999999999985553  34789999999999


Q ss_pred             eCccCCccChhhcCCccccEEecccCcCCccCCC-C---Ccccceecccccc
Q 022917           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCK  126 (290)
Q Consensus        79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~  126 (290)
                      ++|.++.+|..+..+++|+.|++++|. +..+|. .   +++|+.|++++++
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence            999999999999999999999999986 556663 2   4678888887753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.48  E-value=2.2e-13  Score=118.81  Aligned_cols=106  Identities=25%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.+++++. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.....  ..++.+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            3566777777777766544 466677777777777666555556666677777777777664432  2366667777777


Q ss_pred             eeCccCCc--cChhhcCCccccEEecccCcC
Q 022917           78 LSGHNFES--LPTGISQLQRLKCLHLINCNM  106 (290)
Q Consensus        78 Ls~n~l~~--lp~~l~~l~~L~~L~l~~c~~  106 (290)
                      +++|.++.  +|..+.++++|+.|++++|..
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            77777664  566677777777777776653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=2.7e-13  Score=112.36  Aligned_cols=120  Identities=22%  Similarity=0.220  Sum_probs=97.5

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCcc-ccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCc
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n   81 (290)
                      +.++++++.++++|..+..  +|+.|++++|.+.+..+. .++.+++|++|++++|....  +..++.+++|+.|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            5789999999999987654  899999999876554443 37899999999999998554  467889999999999999


Q ss_pred             cCCccCh-hhcCCccccEEecccCcCCccCCCC---Ccccceecccccc
Q 022917           82 NFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK  126 (290)
Q Consensus        82 ~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~  126 (290)
                      .++.++. .+.++++|+.|++++|...+..|..   +++|+.|++++++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            9997654 4889999999999998866666654   4678888887753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.47  E-value=2.6e-13  Score=123.31  Aligned_cols=129  Identities=21%  Similarity=0.199  Sum_probs=103.7

Q ss_pred             CceeEEEcccCCCcccCcc-cc-CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKELPSS-IE-HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +.++.|+|++|.|++++.. +. .+++|+.|+|++|.+.+..|..+.++++|+.|+|++|....  +..+..+++|+.|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3578999999999997765 54 88999999999988776666778899999999999998544  34578899999999


Q ss_pred             eeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC-------CcccceeccccccccCCCC
Q 022917           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL-------PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~-------~~~L~~L~l~~c~~l~~l~  132 (290)
                      |++|.++.+ |..+..+++|+.|+|++|. +..+|..       +++|+.|+++++ .++.++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~  179 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP  179 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence            999999866 5678899999999999876 5566642       578899999885 566655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.47  E-value=2.9e-13  Score=132.04  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=92.3

Q ss_pred             CceeEEEcccCCCcccCccc-cCCCCCcEEeccCCCCCCcCccccCCC--------CCCcEEeccCCCCCC-cCCCC--C
Q 022917            2 ELLQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNL--------KKLQKLCLSQCRCLI-LSGLS--S   69 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~i~~l--------~~L~~L~Ls~~~~l~-~~~l~--~   69 (290)
                      ++|++|++++|.++++|..+ ..+++|+.|++++|.+. .+|..+...        ++|+.|++++|.... +..+.  .
T Consensus       433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            36777777777777776653 34777777777776655 566544332        278888888776444 33444  7


Q ss_pred             CCCCCEEEeeCccCCccChhhcCCccccEEecc------cCcCCccCCCC---CcccceeccccccccCCCCCCCC
Q 022917           70 LSSLKCLELSGHNFESLPTGISQLQRLKCLHLI------NCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        70 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~------~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      +++|+.|++++|.++.+|..+.++++|+.|+++      +|+..+.+|..   +++|+.|++++|.- +.+|....
T Consensus       512 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             CTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             CCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence            888888888888888888888888888888884      45556677754   46788888888654 77776543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.47  E-value=6e-13  Score=124.89  Aligned_cols=120  Identities=22%  Similarity=0.229  Sum_probs=77.6

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|++|++++|.++++| .++.+++|++|++++|.+.+ +|  ++.+++|++|++++|....+ .++.+++|++|++++|
T Consensus        42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCC
Confidence            56788888888887776 47778888888888776544 44  66777777777777764444 3667777777777777


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCC-CCcccceeccccccccC
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQ  129 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~  129 (290)
                      .++.+|  ++++++|+.|++++|... .++- ..++|+.|++++|..++
T Consensus       117 ~l~~l~--~~~l~~L~~L~l~~N~l~-~l~l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A          117 KLTKLD--VSQNPLLTYLNCARNTLT-EIDVSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             CCSCCC--CTTCTTCCEEECTTSCCS-CCCCTTCTTCCEEECTTCSCCC
T ss_pred             cCCeec--CCCCCcCCEEECCCCccc-eeccccCCcCCEEECCCCCccc
Confidence            776665  666666676666665532 2331 23445555555543333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.47  E-value=4.6e-13  Score=129.14  Aligned_cols=123  Identities=26%  Similarity=0.246  Sum_probs=61.8

Q ss_pred             ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917            3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS   79 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls   79 (290)
                      +|++|++++|.++++++ .+..+++|++|++++|.+.+..|..++++++|++|++++|....  +..++.+++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            45555555555555433 35555555555555555444444455555555555555554322  3345555555555555


Q ss_pred             CccCCccC-hhhcCCccccEEecccCcCCc-cCCCC---Ccccceeccccc
Q 022917           80 GHNFESLP-TGISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDC  125 (290)
Q Consensus        80 ~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~-~lp~~---~~~L~~L~l~~c  125 (290)
                      +|.++.+| ..++++++|++|++++|...+ .+|..   +++|++|++++|
T Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            55555443 345555555555555544332 33432   244555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.47  E-value=1.2e-13  Score=123.15  Aligned_cols=129  Identities=15%  Similarity=0.094  Sum_probs=87.6

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCC-CCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGL-SSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l-~~l~~L~~L~L   78 (290)
                      ++|++|++++|.+++++..  .+++|+.|++++|.+.+..|..++.+++|++|++++|....  +..+ +.+++|+.|++
T Consensus        99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            4566677777777665543  36778888888877766666677778888888888886443  2333 35778888888


Q ss_pred             eCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCCC
Q 022917           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKIS  135 (290)
Q Consensus        79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~  135 (290)
                      ++|.++.+|. ...+++|+.|++++|. +..+|..   +++|+.|++++| .++.+|...
T Consensus       177 ~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~  233 (317)
T 3o53_A          177 QYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL  233 (317)
T ss_dssp             TTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC
T ss_pred             CCCcCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHh
Confidence            8888877753 3357788888888866 4445432   367888888775 555666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.47  E-value=2.1e-13  Score=132.19  Aligned_cols=120  Identities=24%  Similarity=0.265  Sum_probs=64.2

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|+.|+|++|.|+++|+ +..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|....++.+..+++|+.|+|++|
T Consensus        65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN  141 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC
Confidence            455555555555555544 555555555555555432 233 45555556666666555444455555556666666666


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCC-CCCcccceeccccc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSDC  125 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~~~~L~~L~l~~c  125 (290)
                      .++.+ ..+..+++|+.|+|++|......| ..+++|+.|++++|
T Consensus       142 ~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          142 KITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             ccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC
Confidence            65555 345556666666666554332222 01345666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.46  E-value=3.6e-13  Score=125.35  Aligned_cols=108  Identities=21%  Similarity=0.230  Sum_probs=66.8

Q ss_pred             CCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEec
Q 022917           25 EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHL  101 (290)
Q Consensus        25 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l  101 (290)
                      ++|+.|++++|.+.+..|..++.+++|+.|++++|....  +..++.+++|+.|++++|.++.+ |..+..+++|+.|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            466777777766666666666667777777777666433  34566667777777777776644 445666677777777


Q ss_pred             ccCcCCccCCCC---CcccceeccccccccCCCCC
Q 022917          102 INCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus       102 ~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++|...+..|..   +++|+.|++++| .++.++.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  388 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD  388 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             CCCcccccChhhccccccccEEECCCC-ccccCCH
Confidence            766644443432   356667777664 3444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=122.90  Aligned_cols=112  Identities=21%  Similarity=0.162  Sum_probs=62.9

Q ss_pred             CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC------cCCCCCCCCCCEEEeeCccCCccChh----hcC
Q 022917           23 HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI------LSGLSSLSSLKCLELSGHNFESLPTG----ISQ   92 (290)
Q Consensus        23 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~------~~~l~~l~~L~~L~Ls~n~l~~lp~~----l~~   92 (290)
                      .+++|++|++++|.+.+..|..++.+++|++|++++|....      ...++.+++|++|++++|.++.+|..    ++.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            35555555555555544444555566666666666665322      12234566666666666666655432    356


Q ss_pred             CccccEEecccCcCCccCCCC------CcccceeccccccccCCCCCCC
Q 022917           93 LQRLKCLHLINCNMIRSLPEL------PFCLNYLNTSDCKRLQSLPKIS  135 (290)
Q Consensus        93 l~~L~~L~l~~c~~l~~lp~~------~~~L~~L~l~~c~~l~~l~~~~  135 (290)
                      +++|++|++++|......|..      +++|+.|++++| .++.+|...
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~  270 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL  270 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh
Confidence            677777777776654444432      246777777664 445555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.46  E-value=8.1e-14  Score=123.87  Aligned_cols=131  Identities=20%  Similarity=0.252  Sum_probs=105.4

Q ss_pred             CCceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCc--Cc--cccCCCCCCcEEeccCCCCCCcCC-----CCCC
Q 022917            1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGF--LP--ESLCNLKKLQKLCLSQCRCLILSG-----LSSL   70 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~Ls~~~~l~~~~-----l~~l   70 (290)
                      +++|++|+|++|.++.++ ..++.+++|++|++++|.+.+.  ++  ..++.+++|++|++++|....++.     ++.+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            468999999999999865 5689999999999999987643  32  234689999999999998544322     4678


Q ss_pred             CCCCEEEeeCccCCcc-ChhhcCC---ccccEEecccCcCCccCCC-CCcccceeccccccccCCCCC
Q 022917           71 SSLKCLELSGHNFESL-PTGISQL---QRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        71 ~~L~~L~Ls~n~l~~l-p~~l~~l---~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++|++|+|++|.++.+ |..+..+   ++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~  289 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQ  289 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCch
Confidence            9999999999999965 8777776   699999999987 557886 4579999999986 4666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=3e-14  Score=141.07  Aligned_cols=111  Identities=24%  Similarity=0.216  Sum_probs=99.8

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS   79 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls   79 (290)
                      +++|+.|+|++|.++.+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.... |..++.+++|++|+|+
T Consensus       223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC
T ss_pred             CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC
Confidence            46799999999999999999999999999999998776 899999999999999999998555 5678899999999999


Q ss_pred             CccCCccChhhcCCccccEEecccCcCCccCCC
Q 022917           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPE  112 (290)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~  112 (290)
                      +|.++.+|..++++++|+.|+|++|...+.+|.
T Consensus       302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            999999999999999999999999987666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.46  E-value=4.1e-13  Score=116.85  Aligned_cols=120  Identities=20%  Similarity=0.235  Sum_probs=103.2

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++|++|++++|.|+++|+ +..+++|+.|++++|.+. .+|... . ++|+.|++++|....++.++.+++|+.|++++
T Consensus        62 l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRN  137 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTT
T ss_pred             CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEccCCccCCChhhcCcccccEEECCC
Confidence            5789999999999999988 999999999999998764 466433 3 99999999999877778899999999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCCC--Ccccceecccccc
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK  126 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~  126 (290)
                      |.++.+| .+..+++|+.|++++|.. ..++.+  +++|+.|+++++.
T Consensus       138 N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          138 NKLKSIV-MLGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             SCCCBCG-GGGGCTTCCEEECTTSCC-CBCTTSTTCCCCCEEEEEEEE
T ss_pred             CcCCCCh-HHccCCCCCEEECCCCcC-cchHHhccCCCCCEEeCCCCc
Confidence            9999987 799999999999999874 444432  5789999998865

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=1.4e-13  Score=111.33  Aligned_cols=110  Identities=24%  Similarity=0.242  Sum_probs=97.1

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.++++ ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.....   ..++.+++|+.|+
T Consensus        48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  126 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD  126 (168)
T ss_dssp             GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred             CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence            46899999999999999 6799999999999999998777888887899999999999986552   5788999999999


Q ss_pred             eeCccCCccCh----hhcCCccccEEecccCcCCccCCC
Q 022917           78 LSGHNFESLPT----GISQLQRLKCLHLINCNMIRSLPE  112 (290)
Q Consensus        78 Ls~n~l~~lp~----~l~~l~~L~~L~l~~c~~l~~lp~  112 (290)
                      +++|.++.+|.    .+..+++|+.|++++|. ...+|.
T Consensus       127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A          127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             CCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             eeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence            99999998886    78999999999999986 555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.46  E-value=5.6e-13  Score=121.98  Aligned_cols=104  Identities=17%  Similarity=0.175  Sum_probs=57.2

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC--CCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS--GLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--~l~~l~~L~~L~L   78 (290)
                      ++|++|++++|.++++++ .+..+++|++|++++|.+.+..|..++++++|++|++++|....++  .++.+++|++|++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            455666666666655443 4555666666666665554444445555666666666665533322  1455566666666


Q ss_pred             eCccCCccC-hhhcCCccccEEecccCc
Q 022917           79 SGHNFESLP-TGISQLQRLKCLHLINCN  105 (290)
Q Consensus        79 s~n~l~~lp-~~l~~l~~L~~L~l~~c~  105 (290)
                      ++|.++.++ ..+.++++|+.|++++|.
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCc
Confidence            666655443 345555666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.46  E-value=3.5e-13  Score=130.03  Aligned_cols=133  Identities=20%  Similarity=0.138  Sum_probs=111.0

Q ss_pred             CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.++++ |..++.+++|++|++++|.+.+..|..++++++|++|++++|....  +..++.+++|++|+
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  134 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN  134 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred             CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence            57899999999999996 5569999999999999998877779999999999999999998554  35799999999999


Q ss_pred             eeCccCC--ccChhhcCCccccEEecccCcCCccCCCCC---cc----cceeccccccccCCCCCC
Q 022917           78 LSGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPELP---FC----LNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        78 Ls~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~---~~----L~~L~l~~c~~l~~l~~~  134 (290)
                      +++|.++  .+|..++++++|++|++++|...+..|..+   .+    +..|+++++. ++.++..
T Consensus       135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~  199 (606)
T 3vq2_A          135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQ  199 (606)
T ss_dssp             CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTT
T ss_pred             CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcc
Confidence            9999997  589999999999999999987655555433   22    4478888864 5555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=3.9e-13  Score=111.40  Aligned_cols=110  Identities=19%  Similarity=0.200  Sum_probs=96.8

Q ss_pred             CceeEEEcccCCCcccCcc--ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      .+|++|++++|.|++++..  ++.+++|++|++++|.+.+..|..+.++++|+.|+|++|....  +..++.+++|++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            3789999999999998764  8999999999999999888889999999999999999998554  34588999999999


Q ss_pred             eeCccCCcc-ChhhcCCccccEEecccCcCCccCC
Q 022917           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLP  111 (290)
Q Consensus        78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp  111 (290)
                      |++|.++.+ |..+..+++|+.|++++|......+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999999955 7789999999999999988655433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.45  E-value=1.5e-13  Score=122.30  Aligned_cols=130  Identities=20%  Similarity=0.208  Sum_probs=106.4

Q ss_pred             CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCc--Ccccc--CCCCCCcEEeccCCCCCCc-----CCCCCCC
Q 022917            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGF--LPESL--CNLKKLQKLCLSQCRCLIL-----SGLSSLS   71 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~--lp~~i--~~l~~L~~L~Ls~~~~l~~-----~~l~~l~   71 (290)
                      ++|++|++++|.+++++ ..++.+++|++|++++|.+.+.  +|..+  ..+++|++|++++|....+     ..+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            78999999999999976 6799999999999999987765  34455  8899999999999985432     1234678


Q ss_pred             CCCEEEeeCccCCccC--hhhcCCccccEEecccCcCCccCCCCC-cccceeccccccccCCCCC
Q 022917           72 SLKCLELSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPELP-FCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        72 ~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp~~~-~~L~~L~l~~c~~l~~l~~  133 (290)
                      +|+.|++++|.++..+  ..+..+++|+.|++++|. ++.+|... ++|+.|++++| .++.+|.
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p~  291 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNPS  291 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCCC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCChh
Confidence            9999999999998654  456778999999999987 45888744 69999999986 5666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.45  E-value=3.3e-13  Score=121.32  Aligned_cols=121  Identities=25%  Similarity=0.345  Sum_probs=92.9

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|++|+++++.++.+|. +..+++|++|++++|.+. .+|. +..+++|++|++++|....++.++.+++|++|++++|
T Consensus        44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED  120 (347)
T ss_dssp             TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS
T ss_pred             ccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC
Confidence            578888888888888875 788888888888887654 4554 7788888888888887666677888888888888888


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCCC--Ccccceecccccc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK  126 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~  126 (290)
                      .++.+|. +..+++|+.|++++|.....++..  +++|+.|++++|.
T Consensus       121 ~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK  166 (347)
T ss_dssp             CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC
Confidence            8887775 778888888888888666665543  3567777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.45  E-value=1.6e-12  Score=110.12  Aligned_cols=124  Identities=21%  Similarity=0.297  Sum_probs=105.1

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++|+.|++++|.|+++|+ .+..+++|+.|+|++|.+.+..|..+.++++|++|+|++|....+  ..+..+++|+.|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            478999999999999876 589999999999999998887799999999999999999986553  33788999999999


Q ss_pred             eCccCCcc-ChhhcCCccccEEecccCcCCccCCC-C---Ccccceecccccc
Q 022917           79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCK  126 (290)
Q Consensus        79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c~  126 (290)
                      ++|.++.+ |..+..+++|+.|++++|. +..++. .   +++|+.|++++++
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence            99999976 5678999999999999987 444443 2   4677888887753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=8.4e-13  Score=132.73  Aligned_cols=133  Identities=17%  Similarity=0.163  Sum_probs=105.0

Q ss_pred             CceeEEEcccCCCcccCcccc-CCCCCcEEeccCCCCCCcCccccCCCC--------CCcEEeccCCCCCC-cCCCC--C
Q 022917            2 ELLQEIDLFLSGIKELPSSIE-HIEGLKCLRLNSCTKLGFLPESLCNLK--------KLQKLCLSQCRCLI-LSGLS--S   69 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~l~--------~L~~L~Ls~~~~l~-~~~l~--~   69 (290)
                      ++|+.|+|++|.++.+|..+. .+++|+.|++++|.+. .+|..+....        +|+.|+|++|.... +..+.  .
T Consensus       673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~  751 (876)
T 4ecn_A          673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT  751 (876)
T ss_dssp             CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred             CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence            378888888888888888754 7889999999997665 7776655433        89999999997544 34455  8


Q ss_pred             CCCCCEEEeeCccCCccChhhcCCccccEEeccc------CcCCccCCCC---CcccceeccccccccCCCCCCCC
Q 022917           70 LSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN------CNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        70 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~------c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      +++|+.|+|++|.++.+|..+..+++|+.|+|++      |...+.+|..   +++|+.|++++|.- +.+|....
T Consensus       752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence            8999999999999998999999999999999976      6667778864   47899999998754 88887643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.44  E-value=5.7e-13  Score=124.00  Aligned_cols=131  Identities=22%  Similarity=0.260  Sum_probs=105.4

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      ++|++|+|++|.++++ |..++.+++|++|++++|...+.+ |..+.++++|++|++++|....  +..++.+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            5789999999999985 667999999999999998877565 4568899999999999998544  56788999999999


Q ss_pred             eeCccCCc-cChh--hcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCC
Q 022917           78 LSGHNFES-LPTG--ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        78 Ls~n~l~~-lp~~--l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~  132 (290)
                      +++|.++. +|..  ++++++|+.|++++|...+..|..    +++|+.|++++|.--...+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            99999874 4544  888999999999998866655652    4789999998875443333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=2e-13  Score=129.08  Aligned_cols=128  Identities=15%  Similarity=0.100  Sum_probs=78.4

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCC-CCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLS-SLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~-~l~~L~~L~L   78 (290)
                      ++|++|++++|.++.++..  .+++|+.|++++|.+.+..|..++.+++|+.|++++|....  +..+. .+++|+.|+|
T Consensus        99 ~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            3566666666666665542  35667777777776666666666677777777777776433  33443 5667777777


Q ss_pred             eCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      ++|.++.+|. ...+++|+.|++++|... .+|..   +++|+.|++++| .+..+|..
T Consensus       177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~  232 (487)
T 3oja_A          177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KLVLIEKA  232 (487)
T ss_dssp             TTSCCCEEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS-CCCEECTT
T ss_pred             CCCccccccc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCC-cCcccchh
Confidence            7777766653 335677777777776533 33332   356777777664 34455544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.44  E-value=5.7e-13  Score=113.79  Aligned_cols=133  Identities=18%  Similarity=0.204  Sum_probs=108.4

Q ss_pred             CCceeEEEcccCC-CcccCc-cccCCCCCcEEeccC-CCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCC---
Q 022917            1 MELLQEIDLFLSG-IKELPS-SIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLK---   74 (290)
Q Consensus         1 l~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~---   74 (290)
                      +++|++|++++|. ++.+|+ .+..+++|++|++++ |.+.+..+..+.++++|++|++++|....++.++.+++|+   
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~  133 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF  133 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEE
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccccc
Confidence            4789999999996 999876 588999999999998 5554444467889999999999999866666688888888   


Q ss_pred             EEEeeCc-cCCccCh-hhcCCcccc-EEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917           75 CLELSGH-NFESLPT-GISQLQRLK-CLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        75 ~L~Ls~n-~l~~lp~-~l~~l~~L~-~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      .|++++| .++.+|. .+.++++|+ .|++++|. +..+|..   .++|+.|++++|..++.++..
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence            9999999 8998876 488899999 99999876 4477753   257999999998777777653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.44  E-value=4.2e-13  Score=127.85  Aligned_cols=133  Identities=22%  Similarity=0.240  Sum_probs=104.5

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++|++|++++|.++++ |..+..+++|++|++++|.+.+..|..++++++|++|++++|.....  ..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            4688999999999885 45688899999999999888777777888999999999999875442  33788899999999


Q ss_pred             eCccCC--ccChhhcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCCCC
Q 022917           79 SGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        79 s~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      ++|.++  .+|..++++++|+.|++++|..++.+|.    .+++|++|++++|.--+..|..
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            999887  4567788899999999998887777763    2467888888887544444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=1.8e-12  Score=121.58  Aligned_cols=124  Identities=23%  Similarity=0.246  Sum_probs=102.9

Q ss_pred             CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++++.|+|++|.|++++ ..+..+++|++|++++|.+.+..|..+.++++|++|+|++|....+  ..++.+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            47899999999999974 5699999999999999988877789999999999999999985543  34788999999999


Q ss_pred             eCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---Ccccceeccccc
Q 022917           79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDC  125 (290)
Q Consensus        79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c  125 (290)
                      ++|.++.+ |..+.++++|+.|++++|......|..   +++|+.|++++|
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            99998855 667888999999999987754443432   467788888775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.43  E-value=1.7e-12  Score=121.85  Aligned_cols=123  Identities=20%  Similarity=0.142  Sum_probs=95.4

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++|++|++++|.++++|  ++.+++|++|++++|.+.+ +|  ++++++|++|++++|....+ .++.+++|+.|++++
T Consensus        63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCAR  136 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCCEEECTT
T ss_pred             cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCee-cCCCCCcCCEEECCC
Confidence            578999999999999986  8899999999999987655 44  88899999999999975554 488889999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCC-CCcccceeccccccccCCCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l~  132 (290)
                      |.++.++  ++++++|+.|++++|..++.++- .+++|+.|++++| .++.+|
T Consensus       137 N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~  186 (457)
T 3bz5_A          137 NTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD  186 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCC
T ss_pred             Cccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceec
Confidence            9988875  77788888888888866666542 2456677776664 333343

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.43  E-value=1.7e-12  Score=116.29  Aligned_cols=130  Identities=25%  Similarity=0.317  Sum_probs=95.8

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc-CCCCCCCCCCEEEee
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELS   79 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~-~~l~~l~~L~~L~Ls   79 (290)
                      ++|++|++++|.++++++ .+..+++|++|++++|.+.+..|..++++++|++|++++|....+ ..+.  ++|++|+++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence            468889999988888654 688889999999998887777788888899999999998875442 2222  788899998


Q ss_pred             CccCCccCh-hhcCCccccEEecccCcCCc--cCCCCCc--ccceeccccccccCCCCCC
Q 022917           80 GHNFESLPT-GISQLQRLKCLHLINCNMIR--SLPELPF--CLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~--~lp~~~~--~L~~L~l~~c~~l~~l~~~  134 (290)
                      +|.++.+|. .+.++++|+.|++++|....  ..|....  +|+.|++++| .++.+|..
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n-~l~~l~~~  190 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKD  190 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS-BCSSCCSS
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCC-CCCccCcc
Confidence            888887765 47888889999998876531  3333221  6777777775 35555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.43  E-value=3.5e-13  Score=122.45  Aligned_cols=125  Identities=19%  Similarity=0.221  Sum_probs=102.7

Q ss_pred             CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +++|++|+|++|.|+++++ .+..+++|++|+|++|.+....+..+.++++|+.|+|++|....  +..+..+++|+.|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            4789999999999999775 59999999999999988766656678999999999999998554  46789999999999


Q ss_pred             eeCccCCccChhh----cCCccccEEecccCcCCccCCC-C---Ccc--cceecccccc
Q 022917           78 LSGHNFESLPTGI----SQLQRLKCLHLINCNMIRSLPE-L---PFC--LNYLNTSDCK  126 (290)
Q Consensus        78 Ls~n~l~~lp~~l----~~l~~L~~L~l~~c~~l~~lp~-~---~~~--L~~L~l~~c~  126 (290)
                      |++|.++.+|..+    ..+++|+.|+|++|+ +..+|. .   ++.  ++.|++++++
T Consensus       143 L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence            9999999999875    679999999999976 566663 1   222  4677877653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.42  E-value=6.2e-13  Score=121.67  Aligned_cols=125  Identities=18%  Similarity=0.094  Sum_probs=96.9

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS   79 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls   79 (290)
                      ++|++|++++|.++.+|..  ..++|+.|++++|.+.+.  ..+..+++|+.|++++|....  +..++.+++|+.|+++
T Consensus       205 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  280 (390)
T ss_dssp             SSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred             CcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence            3567777777777776553  357899999999877543  467889999999999997444  4678889999999999


Q ss_pred             CccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCC
Q 022917           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~  132 (290)
                      +|.++.+|..+..+++|+.|++++|. +..+|..   +++|+.|++++|. +..++
T Consensus       281 ~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~  334 (390)
T 3o6n_A          281 NNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK  334 (390)
T ss_dssp             SSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred             CCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC
Confidence            99999888888888999999999986 5566653   4789999998864 55554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.42  E-value=3.8e-13  Score=130.43  Aligned_cols=126  Identities=27%  Similarity=0.316  Sum_probs=107.7

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      |++|+.|++++|.|+.+|. +..+++|+.|+|++|.+.+ +|. +..+++|+.|+|++|....++.++.+++|+.|+|++
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence            4679999999999999985 9999999999999987755 444 889999999999999977788999999999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l~  132 (290)
                      |.++.+| .+..+++|+.|+|++|. +..++.+  +++|+.|++++|. +..++
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~~~  169 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-ISDIV  169 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSC-CCCCG
T ss_pred             CCCCCCc-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCc-CCCch
Confidence            9999886 68999999999999987 4455543  5789999999874 44443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=1.7e-12  Score=107.69  Aligned_cols=105  Identities=21%  Similarity=0.263  Sum_probs=92.2

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS   79 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls   79 (290)
                      ++|++|++++|.|+.+|..+..+++|+.|++++|.+.+..+..+.++++|+.|+|++|....  +..++.+++|+.|+|+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            47899999999999999889999999999999988877767789999999999999998555  3468899999999999


Q ss_pred             CccCCccCh-hhcCCccccEEecccCcC
Q 022917           80 GHNFESLPT-GISQLQRLKCLHLINCNM  106 (290)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~c~~  106 (290)
                      +|.++.+|. .+..+++|+.|++++|..
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            999998886 478899999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.42  E-value=6.1e-13  Score=126.05  Aligned_cols=133  Identities=19%  Similarity=0.090  Sum_probs=100.4

Q ss_pred             CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      ++|++|++++|.+++++ ..+..+++|++|++++|.+.+..|..++++++|++|++++|....++.. .+++|++|++++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~   99 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF   99 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence            46888899988888866 4588888999999998887776688888899999999998875554444 788899999999


Q ss_pred             ccCCc--cChhhcCCccccEEecccCcCCccCCCCCccc--ceeccccccc--cCCCCCCC
Q 022917           81 HNFES--LPTGISQLQRLKCLHLINCNMIRSLPELPFCL--NYLNTSDCKR--LQSLPKIS  135 (290)
Q Consensus        81 n~l~~--lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L--~~L~l~~c~~--l~~l~~~~  135 (290)
                      |.++.  +|..++++++|++|++++|...+.-...+++|  +.|++++|..  ....|...
T Consensus       100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l  160 (520)
T 2z7x_B          100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL  160 (520)
T ss_dssp             SCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred             CccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccc
Confidence            98874  57888889999999998877544222234556  8888888755  34444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=1.2e-12  Score=126.71  Aligned_cols=123  Identities=18%  Similarity=0.159  Sum_probs=81.6

Q ss_pred             CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~   77 (290)
                      +++|++|+|++|.++++|+ .++.+++|++|+|++|.+.+..|..++++++|++|+|++|....+  ..++.+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            4567778888777777554 577777888888887776665566667777888888887764442  2256777788888


Q ss_pred             eeCccCCccC-hhhcCCccccEEecccCcCCccCC-CCCcccceecccc
Q 022917           78 LSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSD  124 (290)
Q Consensus        78 Ls~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp-~~~~~L~~L~l~~  124 (290)
                      +++|.++.++ ..++++++|+.|++++|.... ++ ..+++|+.|++++
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSY  201 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCS
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhccc
Confidence            8887777554 357777778888877765332 22 2234444444433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.42  E-value=1.7e-12  Score=125.24  Aligned_cols=127  Identities=24%  Similarity=0.248  Sum_probs=88.5

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.++++|+.++.+++|++|++++|.+.+..|..+..+++|++|++++|....   ...++.+++|+.|+
T Consensus       277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            356777888887777777777777888888888777666666677777777777777776332   23467777788888


Q ss_pred             eeCccCCcc---ChhhcCCccccEEecccCcCCccCCCC---Ccccceeccccccc
Q 022917           78 LSGHNFESL---PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKR  127 (290)
Q Consensus        78 Ls~n~l~~l---p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~  127 (290)
                      +++|.++.+   |..+..+++|+.|++++|......|..   +++|+.|++++|..
T Consensus       357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            887777644   556777777777777777654444432   35677777776643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.41  E-value=1.3e-12  Score=106.56  Aligned_cols=123  Identities=26%  Similarity=0.271  Sum_probs=98.3

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCc
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGH   81 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n   81 (290)
                      .+.+++++++++++|..+  .++|+.|++++|.+.+..+..+..+++|++|++++|....+  ..++.+++|+.|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            357889999999998765  37999999999887655555678899999999999985543  33788999999999999


Q ss_pred             cCCccChh-hcCCccccEEecccCcCCccCCCC----CcccceeccccccccC
Q 022917           82 NFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQ  129 (290)
Q Consensus        82 ~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~  129 (290)
                      .++.+|.. +..+++|+.|++++|. ++.+|..    +++|+.|++++++-..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99988764 6889999999999986 4566642    4789999998875433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.41  E-value=8.4e-13  Score=127.32  Aligned_cols=124  Identities=16%  Similarity=0.207  Sum_probs=95.7

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      +++++|++++|.|+++ |..++.+++|++|++++|.+.+..|..++++++|++|++++|....  +..++.+++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            3578888888888886 5568888888899988888777778888888888888888887443  456788888888888


Q ss_pred             eCccCCcc-ChhhcCCccccEEecccCcCCc-cCCCC--Ccccceeccccc
Q 022917           79 SGHNFESL-PTGISQLQRLKCLHLINCNMIR-SLPEL--PFCLNYLNTSDC  125 (290)
Q Consensus        79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~-~lp~~--~~~L~~L~l~~c  125 (290)
                      ++|.++.+ |..++++++|++|++++|...+ .+|..  .++|+.|++++|
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence            88888866 5567888888888888876443 23443  467777877765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.41  E-value=1.7e-12  Score=124.01  Aligned_cols=123  Identities=28%  Similarity=0.299  Sum_probs=84.5

Q ss_pred             ceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEee
Q 022917            3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELS   79 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls   79 (290)
                      +++.|++++|.++++++ .+..+++|++|++++|.+.+..|..+.++++|++|++++|....  +..++.+++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            57778888887777544 47777888888888776655555667777788888887776433  3457777777777777


Q ss_pred             CccCCccCh-hhcCCccccEEecccCcCCc-cCCCC---Ccccceeccccc
Q 022917           80 GHNFESLPT-GISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDC  125 (290)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~-~lp~~---~~~L~~L~l~~c  125 (290)
                      +|.++.+|. .++++++|++|++++|.... .+|..   +++|+.|++++|
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            777776654 46777777777777766443 35543   356777777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.41  E-value=1.3e-12  Score=116.86  Aligned_cols=129  Identities=16%  Similarity=0.232  Sum_probs=105.4

Q ss_pred             CCceeEEEcccCCCcc---cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCE
Q 022917            1 MELLQEIDLFLSGIKE---LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKC   75 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~   75 (290)
                      +++|++|++++|.++.   .+..+..+++|+.|++++|.+ ..+|..+.  ++|+.|++++|....  +..++.+++|+.
T Consensus       144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  220 (330)
T 1xku_A          144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK  220 (330)
T ss_dssp             CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred             CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            5789999999999874   566689999999999999775 45776654  899999999998544  467889999999


Q ss_pred             EEeeCccCCccCh-hhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917           76 LELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        76 L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      |++++|.++.++. .+..+++|+.|++++|. +..+|..   .++|+.|++++| .++.++..
T Consensus       221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~  281 (330)
T 1xku_A          221 LGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSN  281 (330)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             EECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC-cCCccChh
Confidence            9999999997654 78999999999999986 5578764   478999999886 46666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.41  E-value=3.2e-12  Score=104.11  Aligned_cols=109  Identities=22%  Similarity=0.271  Sum_probs=78.5

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++|++|++++|.++++|.. ++.+++|++|++++|.+.+..+..+..+++|+.|++++|.....  ..++.+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            4678888888888876654 57788888888888766544444567788888888888874442  33677788888888


Q ss_pred             eCccCCccChh-hcCCccccEEecccCcCCccC
Q 022917           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSL  110 (290)
Q Consensus        79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l  110 (290)
                      ++|.++.+|.. +..+++|+.|++++|......
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            88888877765 467788888888887654433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.41  E-value=8.8e-13  Score=118.49  Aligned_cols=128  Identities=18%  Similarity=0.256  Sum_probs=106.0

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++|+.|++++|.+++++. +..+++|+.|++++|...+ ++. +..+++|+.|++++|....++.+..+++|+.|++++
T Consensus       198 l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS  274 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC
Confidence            4689999999999998776 8889999999999987654 444 889999999999999876677788999999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCC---CCcccceeccccccccCCCCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE---LPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      |.++.+| .+..+++|+.|++++|......|.   .+++|+.|++++|. +..++.
T Consensus       275 n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~  328 (347)
T 4fmz_A          275 NQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP  328 (347)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred             CccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence            9999885 588899999999999886555544   25789999999986 444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.40  E-value=6.7e-13  Score=118.70  Aligned_cols=122  Identities=22%  Similarity=0.332  Sum_probs=88.2

Q ss_pred             CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.++++ |..++.+++|++|++++|.+ ..+|..+.  ++|+.|++++|.....  ..++.+++|+.|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            47899999999999986 77799999999999999765 46776554  6788888888764432  2366777777777


Q ss_pred             eeCccCC---ccChhhcCCccccEEecccCcCCccCCC-CCcccceecccccc
Q 022917           78 LSGHNFE---SLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCK  126 (290)
Q Consensus        78 Ls~n~l~---~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~  126 (290)
                      +++|.++   ..+..+.++++|+.|++++|. +..+|. .+++|+.|++++|.
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~  203 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNK  203 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSC
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCc
Confidence            7777765   345567777777777777765 445554 34667777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=1.9e-12  Score=105.69  Aligned_cols=100  Identities=21%  Similarity=0.309  Sum_probs=87.4

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCcc
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n~   82 (290)
                      +.++++++.++++|..+.  ++|+.|++++|.+.+..|..+.++++|+.|+|++|....+  ..++.+++|+.|+|++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            578999999999998775  8999999999988777788899999999999999985553  236889999999999999


Q ss_pred             CCccChh-hcCCccccEEecccCcC
Q 022917           83 FESLPTG-ISQLQRLKCLHLINCNM  106 (290)
Q Consensus        83 l~~lp~~-l~~l~~L~~L~l~~c~~  106 (290)
                      ++.+|.. +..+++|+.|++++|..
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCc
Confidence            9988875 88999999999999863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=2.9e-13  Score=107.17  Aligned_cols=102  Identities=24%  Similarity=0.235  Sum_probs=91.4

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.++++ ..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.....   ..++.+++|+.|+
T Consensus        41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            47899999999999999 6699999999999999998777888888899999999999986552   7789999999999


Q ss_pred             eeCccCCccCh----hhcCCccccEEeccc
Q 022917           78 LSGHNFESLPT----GISQLQRLKCLHLIN  103 (290)
Q Consensus        78 Ls~n~l~~lp~----~l~~l~~L~~L~l~~  103 (290)
                      +++|.++.+|.    .+..+++|+.|++++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999998876    689999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=118.46  Aligned_cols=126  Identities=19%  Similarity=0.145  Sum_probs=98.1

Q ss_pred             CCceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC---CCCCCCCCCEE
Q 022917            1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS---GLSSLSSLKCL   76 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~---~l~~l~~L~~L   76 (290)
                      +++|++|++++|.+++++ ..++.+++|++|++++|.+.+..+..++++++|++|++++|....++   .++.+++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L  154 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL  154 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence            478999999999999864 55889999999999998765443444888999999999999755533   47888999999


Q ss_pred             EeeCcc-CCcc-ChhhcCCccccEEecccCcCCccCCCC---Ccccceecccccc
Q 022917           77 ELSGHN-FESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK  126 (290)
Q Consensus        77 ~Ls~n~-l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~  126 (290)
                      ++++|+ ++.+ |..+.++++|+.|++++|...+..|..   +++|++|++++|.
T Consensus       155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            999984 7765 457888899999999988765555543   3567778887754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.39  E-value=1.9e-12  Score=124.19  Aligned_cols=125  Identities=21%  Similarity=0.165  Sum_probs=81.6

Q ss_pred             CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      ++|++|++++|.|+++| ..+..+++|++|++++|.+.+..|..+.++++|++|++++|....++.. .+++|++|++++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~  130 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF  130 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence            45677777777777765 3577777777777777766655566677777777777777764444333 677777777777


Q ss_pred             ccCCcc--ChhhcCCccccEEecccCcCCccCCCCCccc--ceeccccccc
Q 022917           81 HNFESL--PTGISQLQRLKCLHLINCNMIRSLPELPFCL--NYLNTSDCKR  127 (290)
Q Consensus        81 n~l~~l--p~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L--~~L~l~~c~~  127 (290)
                      |.++.+  |..++++++|++|++++|.....-...+++|  +.|++++|..
T Consensus       131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             SCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             CCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence            777654  3567777777777777765433211122344  7777766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.3e-12  Score=104.75  Aligned_cols=102  Identities=21%  Similarity=0.285  Sum_probs=89.1

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEeeCc
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELSGH   81 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~Ls~n   81 (290)
                      .+.|+++++.++++|..+.  ++|++|+|++|.+.+..|..+.++++|++|+|++|....+  ..+..+++|+.|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4689999999999998764  8999999999988877788899999999999999985553  34689999999999999


Q ss_pred             cCCccCh-hhcCCccccEEecccCcCC
Q 022917           82 NFESLPT-GISQLQRLKCLHLINCNMI  107 (290)
Q Consensus        82 ~l~~lp~-~l~~l~~L~~L~l~~c~~l  107 (290)
                      .++.+|. .+.++++|+.|++++|...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            9998876 4889999999999998744

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.39  E-value=1.1e-12  Score=125.32  Aligned_cols=130  Identities=25%  Similarity=0.385  Sum_probs=80.1

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      ++|++|++++|.++++|+.+..+++|+.|++++|...+..| ..+.++++|++|++++|....  +..++.+++|+.|++
T Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence            45556666666555555556666666666666655544433 345566667777776665332  345666777777777


Q ss_pred             eCccCC--ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCC
Q 022917           79 SGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        79 s~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~  132 (290)
                      ++|.++  .+|..+..+++|+.|++++|...+..|..   +++|+.|++++| .+..++
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~  510 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVP  510 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence            777765  46777777777777777777655544543   356777777775 344443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.39  E-value=8.8e-13  Score=127.03  Aligned_cols=112  Identities=22%  Similarity=0.243  Sum_probs=95.3

Q ss_pred             CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~   77 (290)
                      |++|++|+|++|.|+++|+ .|+.+++|++|+|++|.+.+..+..+.++++|++|++++|....+  ..++.+++|++|+
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  154 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence            5789999999999999876 489999999999999876554456789999999999999985553  4589999999999


Q ss_pred             eeCccCC--ccChhhcCCccccEEecccCcCCccCCC
Q 022917           78 LSGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPE  112 (290)
Q Consensus        78 Ls~n~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~  112 (290)
                      +++|.++  .+|..++.+++|++|++++|+..+..|.
T Consensus       155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            9999987  5678899999999999999875444343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.39  E-value=1e-12  Score=128.50  Aligned_cols=125  Identities=19%  Similarity=0.168  Sum_probs=102.8

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC--CCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS--GLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--~l~~l~~L~~L~L   78 (290)
                      ++|++|++++|.++++|+. ++.+++|++|++++|.+.+..|..++++++|++|++++|....++  .++.+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            4688999999999997764 889999999999998888777888888999999999998755533  4888999999999


Q ss_pred             eCccCCccC-hhhcCCccccEEecccCcCCccCCCC---Ccccceecccccc
Q 022917           79 SGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK  126 (290)
Q Consensus        79 s~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~  126 (290)
                      ++|.++.+| ..++++++|++|++++|...+..|..   +++|+.|++++|.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence            999988776 57889999999999998766555543   4678888888763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.39  E-value=1.8e-12  Score=121.58  Aligned_cols=100  Identities=22%  Similarity=0.275  Sum_probs=48.7

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|++|++++|.++++++ ++.+++|+.|++++|...+ ++ .+..+++|+.|++++|.......++.+++|+.|++++|
T Consensus       199 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  275 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN  275 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC
Confidence            456666666666555443 4555555555555544322 22 34445555555555554333333444444444444444


Q ss_pred             cCCccChhhcCCccccEEecccCc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCN  105 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~  105 (290)
                      .++.+|. +..+++|+.|++++|.
T Consensus       276 ~l~~~~~-~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          276 QISNISP-LAGLTALTNLELNENQ  298 (466)
T ss_dssp             CCCCCGG-GTTCTTCSEEECCSSC
T ss_pred             ccCcccc-ccCCCccCeEEcCCCc
Confidence            4444433 4444444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.39  E-value=1.6e-12  Score=123.23  Aligned_cols=130  Identities=23%  Similarity=0.253  Sum_probs=110.3

Q ss_pred             CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCC-c--CCCCCCCCCC
Q 022917            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLI-L--SGLSSLSSLK   74 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~-~--~~l~~l~~L~   74 (290)
                      +++|++|++++|.+++ +|..++.+++|++|++++|.+.+  .+|..++.+++|++|++++|.... +  ..+..+++|+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            4789999999999998 88889999999999999998875  667789999999999999998654 2  2478899999


Q ss_pred             EEEeeCccCC-ccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917           75 CLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        75 ~L~Ls~n~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      .|++++|.++ .+|..+.  ++|+.|++++|+ +..+|..   +++|+.|++++| .++.+|..
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~  462 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDG  462 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence            9999999986 6665554  799999999986 5588863   578999999997 57778765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=1.3e-12  Score=126.33  Aligned_cols=121  Identities=18%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCcc
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~   82 (290)
                      |+.|+|++|.+++. +.++.+++|+.|++++|.+.+..|..++.+++|+.|+|++|.... +..++.+++|+.|+|++|.
T Consensus       234 L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          234 LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             CCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence            34444444444432 224445555555555554444444445555555555555544222 2223344555555555555


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccc
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDC  125 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c  125 (290)
                      ++.+|..+..+++|+.|++++|.....-+..+++|+.|++++|
T Consensus       313 l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          313 LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN  355 (597)
T ss_dssp             CCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred             CCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCC
Confidence            5555544555555555555554422221122344555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.38  E-value=5.9e-12  Score=117.99  Aligned_cols=124  Identities=25%  Similarity=0.359  Sum_probs=73.2

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCC----------
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLS----------   71 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~----------   71 (290)
                      ++|++|++++|.++++| .++.+++|++|++++|.+.+ +|..+   .+|++|++++|....++.++.++          
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            46777777777777777 47777777777777765433 44321   24445555444433332333333          


Q ss_pred             ----------CCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCC
Q 022917           72 ----------SLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        72 ----------~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~  133 (290)
                                +|+.|++++|.++.+| .++.+++|+.|++++|. +..+|..+++|+.|++++|. ++.+|.
T Consensus       206 ~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~-l~~l~~  274 (454)
T 1jl5_A          206 SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNY-LTDLPE  274 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSC-CSCCCC
T ss_pred             cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCc-ccccCc
Confidence                      5555555555555566 36677777777777765 44566666677777776653 444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.38  E-value=6.8e-12  Score=117.56  Aligned_cols=121  Identities=22%  Similarity=0.286  Sum_probs=89.4

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~   82 (290)
                      +|++|++++|.++++|..   .++|++|++++|.+.+ +| .++++++|++|++++|....++.  ...+|++|++++|.
T Consensus       112 ~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~  184 (454)
T 1jl5_A          112 SLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQ  184 (454)
T ss_dssp             TCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC
T ss_pred             CCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCc
Confidence            444555555555444431   1578888888876654 77 58889999999999987444332  23589999999999


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCC
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++.+| .++++++|+.|++++|. +..+|..+++|+.|++++| .++.+|.
T Consensus       185 l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n-~l~~lp~  232 (454)
T 1jl5_A          185 LEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNN-ILEELPE  232 (454)
T ss_dssp             CSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred             CCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCC-cCCcccc
Confidence            99888 68999999999999976 5568888888999998886 4556664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.38  E-value=1.4e-12  Score=124.26  Aligned_cols=112  Identities=18%  Similarity=0.167  Sum_probs=94.5

Q ss_pred             CCceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEE
Q 022917            1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCL   76 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L   76 (290)
                      +++|++|++++|.+++++ ..++.+++|++|++++|.+.+..|..++++++|++|++++|....   +..++.+++|++|
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            578999999999999965 569999999999999988877666679999999999999998543   3568899999999


Q ss_pred             EeeCcc-CCccC-hhhcCCccccEEecccCcCCccCCC
Q 022917           77 ELSGHN-FESLP-TGISQLQRLKCLHLINCNMIRSLPE  112 (290)
Q Consensus        77 ~Ls~n~-l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~  112 (290)
                      ++++|. +..+| ..+.++++|+.|++++|...+.+|.
T Consensus       129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             ECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            999998 66776 4788999999999999886665554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.37  E-value=3.7e-12  Score=122.10  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=82.2

Q ss_pred             cCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc----CCCCCCCCCCEEEeeCccCCc-cChh-hcCCcc
Q 022917           22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL----SGLSSLSSLKCLELSGHNFES-LPTG-ISQLQR   95 (290)
Q Consensus        22 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~----~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~   95 (290)
                      +.+++|++|++++|.+.+..|..++++++|+.|++++|....+    ..++.+++|+.|++++|.++. +|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            5677888888888877777777788888888888888764432    346777888888888888775 7654 667778


Q ss_pred             ccEEecccCcCCccCCCCC-cccceeccccccccCCCCCCCC
Q 022917           96 LKCLHLINCNMIRSLPELP-FCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        96 L~~L~l~~c~~l~~lp~~~-~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      |+.|++++|...+.+|..+ ++|+.|++++| .++.+|....
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~  470 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVT  470 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTT
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhc
Confidence            8888888877666666544 57778887776 5666665443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=2.6e-12  Score=123.64  Aligned_cols=111  Identities=24%  Similarity=0.334  Sum_probs=59.1

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~   82 (290)
                      +|+.|++++|.|+++|..+.  ++|+.|++++|.+. .+|   ..+++|++|++++|....++.++.  +|+.|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCc
Confidence            45666666666666665542  56666666665443 455   335566666666665333322222  55555555555


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccc
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDC  125 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c  125 (290)
                      ++.+|.   .+++|+.|++++|. +..+|..+++|+.|++++|
T Consensus       132 l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          132 LTMLPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNN  170 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             CCCCCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCC
Confidence            555554   34555555555544 3334544445555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.37  E-value=2.3e-12  Score=129.55  Aligned_cols=124  Identities=20%  Similarity=0.160  Sum_probs=78.3

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      ++|++|+|++|.|+++ |..+..+++|++|++++|...+.+ |..+.++++|++|+|++|....  +..++.+++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            5677778887777774 555777777777777777555555 5567777777777777776433  45566666666666


Q ss_pred             eeCccCCc-cChh--hcCCccccEEecccCcCCccCCC----CCcccceeccccc
Q 022917           78 LSGHNFES-LPTG--ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC  125 (290)
Q Consensus        78 Ls~n~l~~-lp~~--l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c  125 (290)
                      |++|.++. +|..  ++++++|++|++++|...+..+.    .+++|+.|++++|
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            66666653 4443  66666666666666654333221    1355666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.37  E-value=2.1e-12  Score=121.05  Aligned_cols=84  Identities=20%  Similarity=0.314  Sum_probs=55.4

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++|++|++++|.++++|+ ++.+++|++|++++|...+. +. ++++++|++|++++|.....+.++.+++|++|++++
T Consensus        67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~  143 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  143 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred             hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCC
Confidence            3567777777777777665 66777777777777655433 33 667777777777777655444566777777777777


Q ss_pred             ccCCccC
Q 022917           81 HNFESLP   87 (290)
Q Consensus        81 n~l~~lp   87 (290)
                      |.++.+|
T Consensus       144 n~l~~~~  150 (466)
T 1o6v_A          144 NTISDIS  150 (466)
T ss_dssp             EEECCCG
T ss_pred             CccCCCh
Confidence            7666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.36  E-value=2e-12  Score=115.82  Aligned_cols=121  Identities=22%  Similarity=0.364  Sum_probs=92.4

Q ss_pred             CCceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.++++ |..++.+++|++|++++|.+ ..+|..+.  ++|++|++++|.....  ..++.+++|+.|+
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            47899999999999996 66799999999999999765 46777664  7899999999875543  3377888999999


Q ss_pred             eeCccCC---ccChhhcCCccccEEecccCcCCccCCC-CCcccceecccccc
Q 022917           78 LSGHNFE---SLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCK  126 (290)
Q Consensus        78 Ls~n~l~---~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~  126 (290)
                      +++|.++   ..|..+..+ +|+.|++++|. +..+|. .+++|+.|++++|.
T Consensus       154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~  204 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNK  204 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSC
T ss_pred             CCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCc
Confidence            9998876   345566666 78888888866 445664 34677777777753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.35  E-value=5.6e-12  Score=126.68  Aligned_cols=132  Identities=20%  Similarity=0.236  Sum_probs=106.4

Q ss_pred             CCceeEEEcccCC-Cccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCC--CCCCCCCC
Q 022917            1 MELLQEIDLFLSG-IKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSG--LSSLSSLK   74 (290)
Q Consensus         1 l~~L~~L~L~~~~-l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~--l~~l~~L~   74 (290)
                      +++|++|+|++|. +..+ |..++++++|++|+|++|.+.+..|..++++++|++|+|++|....  +..  ++.+++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            5789999999984 4556 6679999999999999999888889999999999999999998554  443  88999999


Q ss_pred             EEEeeCccCCcc--ChhhcCCccccEEecccCcCCccCCCCC-----cccceeccccccccCCCC
Q 022917           75 CLELSGHNFESL--PTGISQLQRLKCLHLINCNMIRSLPELP-----FCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        75 ~L~Ls~n~l~~l--p~~l~~l~~L~~L~l~~c~~l~~lp~~~-----~~L~~L~l~~c~~l~~l~  132 (290)
                      +|++++|.++.+  +..++++++|+.|++++|......|..+     ++|+.|++++|......+
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence            999999999855  3578999999999999987655555432     567777777765444333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.35  E-value=5.2e-12  Score=114.15  Aligned_cols=131  Identities=20%  Similarity=0.232  Sum_probs=83.9

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCcc--------------------------ccCCCCCCcEE
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE--------------------------SLCNLKKLQKL   54 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--------------------------~i~~l~~L~~L   54 (290)
                      +++++|+|++|.|+++|+. |..+++|++|+|++|...+.+|.                          .+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            4688999999999998864 78899999999998876554442                          23445555666


Q ss_pred             eccCCCCCCc---------------------------CCCCCC-CCCCEEEeeCccCCccChhhcCCccccEEecccCcC
Q 022917           55 CLSQCRCLIL---------------------------SGLSSL-SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNM  106 (290)
Q Consensus        55 ~Ls~~~~l~~---------------------------~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~  106 (290)
                      ++++|.....                           ..+..+ ..++.|++++|.++.+|..+....+|+.|++.+|+.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            5555542220                           112222 245666666666666666655566666777766666


Q ss_pred             CccCCCC----CcccceeccccccccCCCCC
Q 022917          107 IRSLPEL----PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus       107 l~~lp~~----~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++.+|..    +++|+.|+++++ .++.+|.
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~  219 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRT-RIHSLPS  219 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTS-CCCCCCS
T ss_pred             ccCCCHHHhccCcccchhhcCCC-CcCccCh
Confidence            6666642    356777777664 5666665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.34  E-value=8.5e-12  Score=120.06  Aligned_cols=118  Identities=25%  Similarity=0.331  Sum_probs=78.5

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|++|+|++|.|+.+|   ..+++|+.|++++|.+.+ +|. +.+  +|+.|++++|....++.  .+++|+.|++++|
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCC
Confidence            46778888888887777   346778888888776544 666 544  77777777776444443  5667777777777


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCC
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      .++.+|.   .+++|+.|++++|. ++.+|.+.++|+.|++++| .++.+|.
T Consensus       151 ~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N-~L~~lp~  197 (571)
T 3cvr_A          151 QLTMLPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTN-LLESLPA  197 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred             ccCcCCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCC-CCCchhh
Confidence            7777665   45677777777765 4446664466777777664 4555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.34  E-value=3.5e-13  Score=120.19  Aligned_cols=128  Identities=19%  Similarity=0.096  Sum_probs=85.2

Q ss_pred             CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC---------------
Q 022917            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS---------------   65 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~---------------   65 (290)
                      ++|++|++++|.+++++ ..+..+++|++|++++|.+.+..|  +..+++|++|++++|......               
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l  111 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence            57899999999999976 468999999999999988765443  888999999999988632210               


Q ss_pred             ---CCCCCCCCCEEEeeCccCCccCh-hhcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCC
Q 022917           66 ---GLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        66 ---~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~  132 (290)
                         ....+++|+.|++++|.++.++. .+..+++|+.|++++|......+.    .+++|+.|++++|. ++.++
T Consensus       112 ~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  185 (317)
T 3o53_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK  185 (317)
T ss_dssp             SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred             CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc
Confidence               01234556666666666665433 556666777777777654433222    13566677776643 44443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.33  E-value=1.8e-13  Score=122.36  Aligned_cols=126  Identities=25%  Similarity=0.237  Sum_probs=73.0

Q ss_pred             CceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC----cCCCCCCCCCCE
Q 022917            2 ELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI----LSGLSSLSSLKC   75 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l~~l~~L~~   75 (290)
                      ++|++|++++|.++.  +|..+..+++|++|++++|...+..|..++.+++|++|++++|..++    +..++.+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            456666666666553  55556666666666666665555555566666666666666664333    122445666666


Q ss_pred             EEeeCc-cCCc--cChhhcCCc-cccEEecccCc-CC--ccCCCC---Ccccceeccccccc
Q 022917           76 LELSGH-NFES--LPTGISQLQ-RLKCLHLINCN-MI--RSLPEL---PFCLNYLNTSDCKR  127 (290)
Q Consensus        76 L~Ls~n-~l~~--lp~~l~~l~-~L~~L~l~~c~-~l--~~lp~~---~~~L~~L~l~~c~~  127 (290)
                      |++++| .++.  ++..+..++ +|+.|++++|. .+  ..+|..   .++|+.|++++|..
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence            666666 5652  555566666 66666666663 12  223321   35566666666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.33  E-value=1.2e-11  Score=120.88  Aligned_cols=104  Identities=22%  Similarity=0.202  Sum_probs=49.7

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      ++|++|++++|.++++ |..++.+++|++|++++|.+.+..+..++++++|++|++++|....  +..++.+++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            3455555555555553 3335555555555555544332222235555555555555554322  123445555555555


Q ss_pred             eCccCCcc-ChhhcCCccccEEecccCc
Q 022917           79 SGHNFESL-PTGISQLQRLKCLHLINCN  105 (290)
Q Consensus        79 s~n~l~~l-p~~l~~l~~L~~L~l~~c~  105 (290)
                      ++|.++.+ |..++++++|+.|++++|.
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             CCCcccccCchhhcccccCCEEEccCCc
Confidence            55554422 3334445555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.32  E-value=6.5e-13  Score=125.59  Aligned_cols=129  Identities=19%  Similarity=0.088  Sum_probs=90.9

Q ss_pred             CceeEEEcccCCCcccC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC---------------
Q 022917            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS---------------   65 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~---------------   65 (290)
                      ++|++|+|++|.++.++ ..++.+++|++|+|++|.+.+..|  ++.+++|++|++++|....++               
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            47999999999999965 569999999999999988766554  889999999999988632211               


Q ss_pred             ---CCCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC----CcccceeccccccccCCCCC
Q 022917           66 ---GLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        66 ---~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l~~  133 (290)
                         ....+++|+.|++++|.++.+ |..++.+++|+.|++++|...+..|..    +++|+.|++++|. +..++.
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~  186 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG  186 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc
Confidence               012345677777777777644 446677777777777777655544432    3567777777653 444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=1.6e-12  Score=128.60  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=91.4

Q ss_pred             CCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEeeCccCCccChhh
Q 022917           12 SGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHNFESLPTGI   90 (290)
Q Consensus        12 ~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls~n~l~~lp~~l   90 (290)
                      |.+...|..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.... +..++.+++|+.|+|++|.|+.+|..+
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~  289 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL  289 (727)
T ss_dssp             -----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred             cceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence            333334666889999999999998765 889889999999999999998555 456889999999999999999999999


Q ss_pred             cCCccccEEecccCcCCccCCCC---Ccccceeccccccc
Q 022917           91 SQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKR  127 (290)
Q Consensus        91 ~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~  127 (290)
                      +++++|++|+|++|. ++.+|..   +++|+.|++++|.-
T Consensus       290 ~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             GGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             cCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence            999999999999986 6788874   46899999988753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=2.1e-12  Score=105.31  Aligned_cols=103  Identities=21%  Similarity=0.245  Sum_probs=89.7

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccc-cCCCCCCcEEeccCCCCCCcC---CCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPES-LCNLKKLQKLCLSQCRCLILS---GLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~Ls~~~~l~~~---~l~~l~~L~~L~   77 (290)
                      ++|++|++++|.|+++ +.++.+++|++|++++|.+. .+|.. +..+++|++|++++|.....+   .++.+++|+.|+
T Consensus        42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence            4899999999999999 56999999999999998765 45544 488999999999999865533   578899999999


Q ss_pred             eeCccCCccChh----hcCCccccEEecccCcC
Q 022917           78 LSGHNFESLPTG----ISQLQRLKCLHLINCNM  106 (290)
Q Consensus        78 Ls~n~l~~lp~~----l~~l~~L~~L~l~~c~~  106 (290)
                      +++|.++.+|..    +..+++|+.|++++|..
T Consensus       120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            999999999985    89999999999998763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.29  E-value=3.4e-11  Score=116.99  Aligned_cols=118  Identities=25%  Similarity=0.260  Sum_probs=77.5

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~   82 (290)
                      +++.|+++++.++.+|..+.  ++|+.|++++|.+ ..+|.   .+++|++|++++|....++.  .+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCc
Confidence            46777888777777777665  6777888877654 35665   56777777777776444333  56677777777777


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCCCCcccceeccccccccCCCCC
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      ++.+|.   .+++|+.|++++|+ +..+|..+++|++|++++| .++.+|.
T Consensus       113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N-~l~~l~~  158 (622)
T 3g06_A          113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN-QLASLPA  158 (622)
T ss_dssp             CCCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCC
T ss_pred             CCCCCC---CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCC-cCCCcCC
Confidence            777665   45666667766654 5556666666666666665 3444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.27  E-value=4.7e-11  Score=116.02  Aligned_cols=110  Identities=23%  Similarity=0.196  Sum_probs=77.1

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|++|++++|.|+.+|.   .+++|++|++++|.+ ..+|.   .+++|++|++++|....++.  .+++|+.|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCC
Confidence            468888888888888887   568888888888764 45665   67888888888887544333  5567777777777


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCCCCcccceecccc
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD  124 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~  124 (290)
                      .++.+|..   +++|+.|++++|. +..+|..+.+|+.|++++
T Consensus       132 ~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~  170 (622)
T 3g06_A          132 QLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYN  170 (622)
T ss_dssp             CCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             CCCcCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCC
Confidence            77777653   3667777777664 445565555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.26  E-value=1.1e-12  Score=117.30  Aligned_cols=127  Identities=23%  Similarity=0.297  Sum_probs=103.2

Q ss_pred             CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCC----cCCCCCCC-C
Q 022917            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLI----LSGLSSLS-S   72 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~----~~~l~~l~-~   72 (290)
                      +++|++|++++|.+++ .|..++.+++|++|++++|..+.  .++..+.++++|++|++++|..++    +..++.++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            4789999999999986 77789999999999999994444  367778889999999999994344    33466788 9


Q ss_pred             CCEEEeeCcc--CC--ccChhhcCCccccEEecccCcCC-ccCCC---CCcccceeccccccc
Q 022917           73 LKCLELSGHN--FE--SLPTGISQLQRLKCLHLINCNMI-RSLPE---LPFCLNYLNTSDCKR  127 (290)
Q Consensus        73 L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~l~~c~~l-~~lp~---~~~~L~~L~l~~c~~  127 (290)
                      |++|++++|.  ++  .+|..+.++++|+.|++++|..+ ...+.   ..++|+.|++++|..
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            9999999994  54  67888899999999999999843 33332   247899999999973

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=5.3e-14  Score=117.04  Aligned_cols=120  Identities=21%  Similarity=0.204  Sum_probs=87.5

Q ss_pred             eeEEEcccC--CCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcC-CCCCCCCCCEEEeeC
Q 022917            4 LQEIDLFLS--GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILS-GLSSLSSLKCLELSG   80 (290)
Q Consensus         4 L~~L~L~~~--~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~-~l~~l~~L~~L~Ls~   80 (290)
                      |+.+.+.+.  .++++|..+..+++|++|++++|.+.+ +| .+..+++|+.|++++|....++ .+..+++|+.|++++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            445555553  555666688888999999998876544 77 7888889999999988744332 233457889999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCC-----CCcccceeccccccc
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCKR  127 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-----~~~~L~~L~l~~c~~  127 (290)
                      |.++.+| .+..+++|+.|++++|. +..+|.     .+++|+.|++++|.-
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence            9888887 68888899999998876 444332     246788888888754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.19  E-value=3.3e-11  Score=116.03  Aligned_cols=99  Identities=21%  Similarity=0.282  Sum_probs=86.9

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~   77 (290)
                      |++|+.|+|++|.|+.+|..++.+++|+.|+|++|.+.+ +| .++++++|+.|+|++|....   |..++.+++|+.|+
T Consensus       462 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             cccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            468999999999999999999999999999999987765 78 89999999999999998544   46788999999999


Q ss_pred             eeCccCCccChhh----cCCccccEEec
Q 022917           78 LSGHNFESLPTGI----SQLQRLKCLHL  101 (290)
Q Consensus        78 Ls~n~l~~lp~~l----~~l~~L~~L~l  101 (290)
                      |++|.++.+|..+    ..+++|+.|++
T Consensus       540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          540 LQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999877644    34788998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=8.2e-11  Score=105.79  Aligned_cols=101  Identities=19%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             EEEcccC-CCcccCccccCCCCCcEEeccC-CCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeCc
Q 022917            6 EIDLFLS-GIKELPSSIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         6 ~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~n   81 (290)
                      .++++++ .|+++|. +..+++|+.|+|++ |.+.+..|..+.++++|+.|+|++|....  +..|+.+++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4688887 9999999 99999999999997 66655555789999999999999997444  456789999999999999


Q ss_pred             cCCccChhhcCCccccEEecccCcCC
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMI  107 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l  107 (290)
                      .|+.+|..+.....|+.|+|.+|...
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCcc
Confidence            99999876554445999999997743

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.11  E-value=2.2e-10  Score=93.32  Aligned_cols=91  Identities=21%  Similarity=0.208  Sum_probs=75.3

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++|++|+|++|.|+++ |..++.+++|++|+|++|.+.+..+..+.++++|++|+|++|....+  ..++.+++|+.|+|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            5789999999999997 55699999999999999876554344468999999999999985553  34889999999999


Q ss_pred             eCccCCccChhhcC
Q 022917           79 SGHNFESLPTGISQ   92 (290)
Q Consensus        79 s~n~l~~lp~~l~~   92 (290)
                      ++|.+...+..+..
T Consensus       113 ~~N~~~c~~~~~~~  126 (174)
T 2r9u_A          113 YNNPWDCECRDIMY  126 (174)
T ss_dssp             CSSCBCTTBGGGHH
T ss_pred             CCCCcccccccHHH
Confidence            99999877654443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.09  E-value=3.8e-10  Score=91.50  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=73.2

Q ss_pred             CceeEEEcccCCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~L   78 (290)
                      ++|++|+|++|.|+++ |..+..+++|++|+|++|.+.+..+..+..+++|++|+|++|....+  ..++.+++|+.|+|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            5789999999999997 55699999999999999887655555578999999999999985553  34889999999999


Q ss_pred             eCccCCccC
Q 022917           79 SGHNFESLP   87 (290)
Q Consensus        79 s~n~l~~lp   87 (290)
                      ++|.++..+
T Consensus       110 ~~N~~~c~c  118 (170)
T 3g39_A          110 LNNPWDCAC  118 (170)
T ss_dssp             CSSCBCTTB
T ss_pred             CCCCCCCCc
Confidence            999987444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.09  E-value=1.6e-12  Score=107.96  Aligned_cols=101  Identities=22%  Similarity=0.241  Sum_probs=58.4

Q ss_pred             CCCCcEEeccCCCCCCcCcc------ccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccChhhcCCcccc
Q 022917           24 IEGLKCLRLNSCTKLGFLPE------SLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLK   97 (290)
Q Consensus        24 L~~L~~L~L~~~~~l~~lp~------~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~   97 (290)
                      ...++.++++.+.+.+..|.      .+..+++|++|++++|....++.++.+++|+.|++++|.++.+|..+..+++|+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~   96 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLE   96 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCS
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCC
Confidence            33444444444444333333      566666677777766664444455566667777777776666666666666677


Q ss_pred             EEecccCcCCccCCCC--Ccccceeccccc
Q 022917           98 CLHLINCNMIRSLPEL--PFCLNYLNTSDC  125 (290)
Q Consensus        98 ~L~l~~c~~l~~lp~~--~~~L~~L~l~~c  125 (290)
                      .|++++|. +..+|.+  +++|+.|++++|
T Consensus        97 ~L~L~~N~-l~~l~~~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A           97 ELWISYNQ-IASLSGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             EEEEEEEE-CCCHHHHHHHHHSSEEEESEE
T ss_pred             EEECcCCc-CCcCCccccCCCCCEEECCCC
Confidence            77776654 3344432  245666666664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.07  E-value=1.7e-11  Score=111.96  Aligned_cols=125  Identities=19%  Similarity=0.154  Sum_probs=72.4

Q ss_pred             CceeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCCCcCc----cccCCC---------CCCcEEeccCCCCCC
Q 022917            2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLGFLP----ESLCNL---------KKLQKLCLSQCRCLI   63 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp----~~i~~l---------~~L~~L~Ls~~~~l~   63 (290)
                      ++|++|+|++|.++.     +|..+..+++|++|+|++|.+....+    ..+..+         ++|++|++++|....
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            445555555555544     44445555555555555554422111    112222         556666666655221


Q ss_pred             --c----CCCCCCCCCCEEEeeCccCC------ccChhhcCCccccEEecccCcCC----ccCCCC---Ccccceecccc
Q 022917           64 --L----SGLSSLSSLKCLELSGHNFE------SLPTGISQLQRLKCLHLINCNMI----RSLPEL---PFCLNYLNTSD  124 (290)
Q Consensus        64 --~----~~l~~l~~L~~L~Ls~n~l~------~lp~~l~~l~~L~~L~l~~c~~l----~~lp~~---~~~L~~L~l~~  124 (290)
                        .    ..+..+++|+.|++++|.++      -+|..+.++++|+.|+|++|...    ..+|..   .++|+.|++++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence              1    23445678888888888876      23336778888888888887742    445532   36788888888


Q ss_pred             cc
Q 022917          125 CK  126 (290)
Q Consensus       125 c~  126 (290)
                      |.
T Consensus       254 n~  255 (386)
T 2ca6_A          254 CL  255 (386)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.01  E-value=1.1e-09  Score=98.83  Aligned_cols=133  Identities=23%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             ceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCcc-ccCCC-CCCcEEeccCCCCCC-cCCCCCCCCCCEEEe
Q 022917            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE-SLCNL-KKLQKLCLSQCRCLI-LSGLSSLSSLKCLEL   78 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l-~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~L   78 (290)
                      +|++|++++|.++.+|+. +....++..|++.++..+..+|. .+..+ ..++.|++++|.... +.......+|+.|++
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence            344444444444443321 22223333444433333333332 23333 357788888887444 344556678999999


Q ss_pred             eC-ccCCccCh-hhcCCccccEEecccCcCCccCCC-CCcccceeccccccccCCCCCCCC
Q 022917           79 SG-HNFESLPT-GISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        79 s~-n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      ++ |.++.+|. .++.+++|+.|++++|+ ++.+|. .+.+|+.|.+.++..++.+|....
T Consensus       185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~  244 (350)
T 4ay9_X          185 SDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEK  244 (350)
T ss_dssp             TTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred             ccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchh
Confidence            86 56889986 46899999999999976 778886 478899999999999999996433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.91  E-value=4.1e-10  Score=102.72  Aligned_cols=126  Identities=17%  Similarity=0.115  Sum_probs=100.5

Q ss_pred             CceeEEEcccCCCcc--cC---ccccCCCCCcEEeccCCCCCC-----cCccccCCCCCCcEEeccCCCCC----C--cC
Q 022917            2 ELLQEIDLFLSGIKE--LP---SSIEHIEGLKCLRLNSCTKLG-----FLPESLCNLKKLQKLCLSQCRCL----I--LS   65 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp---~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~Ls~~~~l----~--~~   65 (290)
                      ++|++|++++|.++.  +|   ..+..+++|+.|++++|.+..     ..|..+..+++|+.|+|++|...    .  +.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            689999999999973  55   467789999999999987652     24447888999999999999842    1  45


Q ss_pred             CCCCCCCCCEEEeeCccCCc-----cChhhcC--CccccEEecccCcCCc----cCCCC----Ccccceeccccccc
Q 022917           66 GLSSLSSLKCLELSGHNFES-----LPTGISQ--LQRLKCLHLINCNMIR----SLPEL----PFCLNYLNTSDCKR  127 (290)
Q Consensus        66 ~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~--l~~L~~L~l~~c~~l~----~lp~~----~~~L~~L~l~~c~~  127 (290)
                      .+..+++|+.|+|++|.++.     +|..+..  +++|+.|+|++|....    .+|..    +++|+.|++++|.-
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            67788999999999999874     4667744  8999999999988655    37753    47899999998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.89  E-value=4.6e-10  Score=101.69  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=57.0

Q ss_pred             ceeEEEcccCCCcccC-----ccccCCC-CCcEEeccCCCCCCcCccccCCC-----CCCcEEeccCCCCCCc--C----
Q 022917            3 LLQEIDLFLSGIKELP-----SSIEHIE-GLKCLRLNSCTKLGFLPESLCNL-----KKLQKLCLSQCRCLIL--S----   65 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp-----~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~Ls~~~~l~~--~----   65 (290)
                      +|++|+|++|.+++.+     ..+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.....  .    
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            4777777777777655     3456666 67777777766655545444443     6677777777663221  1    


Q ss_pred             CCCCC-CCCCEEEeeCccCCccCh-h----hcC-CccccEEecccCc
Q 022917           66 GLSSL-SSLKCLELSGHNFESLPT-G----ISQ-LQRLKCLHLINCN  105 (290)
Q Consensus        66 ~l~~l-~~L~~L~Ls~n~l~~lp~-~----l~~-l~~L~~L~l~~c~  105 (290)
                      .+..+ ++|+.|++++|.++..+. .    +.. .++|++|++++|.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            12223 456666666666553332 1    222 1355555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.85  E-value=7.1e-10  Score=100.45  Aligned_cols=124  Identities=15%  Similarity=0.149  Sum_probs=87.2

Q ss_pred             ceeEEEcccCCCccc-CccccCC-----CCCcEEeccCCCCCCcCcccc----CCC-CCCcEEeccCCCCCCc------C
Q 022917            3 LLQEIDLFLSGIKEL-PSSIEHI-----EGLKCLRLNSCTKLGFLPESL----CNL-KKLQKLCLSQCRCLIL------S   65 (290)
Q Consensus         3 ~L~~L~L~~~~l~~l-p~~i~~L-----~~L~~L~L~~~~~l~~lp~~i----~~l-~~L~~L~Ls~~~~l~~------~   65 (290)
                      +|++|+|++|.+++. +..+..+     ++|++|++++|.+.+..+..+    ..+ ++|++|++++|.....      .
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            789999999988874 4445554     889999999988765555533    344 7899999999873321      1


Q ss_pred             CCCC-CCCCCEEEeeCccCC-----ccChhhcCCc-cccEEecccCcCCccCCC--------CCcccceecccccc
Q 022917           66 GLSS-LSSLKCLELSGHNFE-----SLPTGISQLQ-RLKCLHLINCNMIRSLPE--------LPFCLNYLNTSDCK  126 (290)
Q Consensus        66 ~l~~-l~~L~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~l~~c~~l~~lp~--------~~~~L~~L~l~~c~  126 (290)
                      .+.. .++|++|++++|.++     .++..+..++ +|+.|++++|......+.        .+++|+.|++++|.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            1333 368999999999887     4555666665 899999999874433321        12589999998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.79  E-value=1.9e-10  Score=106.88  Aligned_cols=126  Identities=19%  Similarity=0.167  Sum_probs=91.4

Q ss_pred             CCceeEEEcccCCCccc------CccccCCCCCcEEeccCCCCCCc----CccccCCCCCCcEEeccCCCCCC--cCC--
Q 022917            1 MELLQEIDLFLSGIKEL------PSSIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCLI--LSG--   66 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~l------p~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~~~~l~--~~~--   66 (290)
                      +++|++|++++|.+++.      +..+..+++|+.|++++|.+...    ++..+..+++|++|++++|....  +..  
T Consensus       226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  305 (461)
T 1z7x_W          226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  305 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence            47899999999988762      22234688999999999876543    67777789999999999996322  111  


Q ss_pred             ---CCCCCCCCEEEeeCccCCc-----cChhhcCCccccEEecccCcCCccCC----C----CCcccceecccccc
Q 022917           67 ---LSSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNMIRSLP----E----LPFCLNYLNTSDCK  126 (290)
Q Consensus        67 ---l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~lp----~----~~~~L~~L~l~~c~  126 (290)
                         ....++|+.|++++|.++.     +|..+..+++|+.|++++|.....-+    +    ..++|+.|++++|.
T Consensus       306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence               1233689999999999873     56777888999999999986432211    1    13589999998874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.78  E-value=1.5e-08  Score=90.80  Aligned_cols=84  Identities=21%  Similarity=0.184  Sum_probs=70.9

Q ss_pred             CCceeEEEccc-CCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cC-CCCCCCCCCEE
Q 022917            1 MELLQEIDLFL-SGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LS-GLSSLSSLKCL   76 (290)
Q Consensus         1 l~~L~~L~L~~-~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~-~l~~l~~L~~L   76 (290)
                      +++|++|+|++ |.|+.+|+ .|+.|++|+.|+|++|.+.+..|..|.++++|+.|+|++|.... +. .+..+. |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            35799999997 99999875 59999999999999998888778888999999999999998554 23 344444 9999


Q ss_pred             EeeCccCCc
Q 022917           77 ELSGHNFES   85 (290)
Q Consensus        77 ~Ls~n~l~~   85 (290)
                      +|.+|.+..
T Consensus       109 ~l~~N~~~c  117 (347)
T 2ifg_A          109 VLSGNPLHC  117 (347)
T ss_dssp             ECCSSCCCC
T ss_pred             EeeCCCccC
Confidence            999999873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.74  E-value=8.5e-10  Score=102.53  Aligned_cols=126  Identities=24%  Similarity=0.236  Sum_probs=95.0

Q ss_pred             CCceeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCCCcCccccC-----CCCCCcEEeccCCCCCC------c
Q 022917            1 MELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLGFLPESLC-----NLKKLQKLCLSQCRCLI------L   64 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-----~l~~L~~L~Ls~~~~l~------~   64 (290)
                      +++|++|++++|.++.     ++..+..+++|+.|++++|.+....+..+.     ..++|+.|++++|....      +
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            3689999999999988     788888899999999999876443222222     33699999999998432      2


Q ss_pred             CCCCCCCCCCEEEeeCccCCcc-Chhhc----C-CccccEEecccCcCCc----cCCCC---Ccccceecccccc
Q 022917           65 SGLSSLSSLKCLELSGHNFESL-PTGIS----Q-LQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCK  126 (290)
Q Consensus        65 ~~l~~l~~L~~L~Ls~n~l~~l-p~~l~----~-l~~L~~L~l~~c~~l~----~lp~~---~~~L~~L~l~~c~  126 (290)
                      ..+..+++|+.|++++|.++.. +..+.    . .++|+.|++++|....    .+|..   .++|+.|++++|.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            3355678999999999998743 33333    2 6799999999987543    56643   4789999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.63  E-value=1.9e-09  Score=98.32  Aligned_cols=123  Identities=17%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             ceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcCcccc-----CCCCCCcEEeccCCCCCC------cCCCCC
Q 022917            3 LLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESL-----CNLKKLQKLCLSQCRCLI------LSGLSS   69 (290)
Q Consensus         3 ~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-----~~l~~L~~L~Ls~~~~l~------~~~l~~   69 (290)
                      +|++|+|++|.+++  +..-...+++|+.|+|++|.+...-...+     ...++|+.|+|++|....      ...+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            55666666665543  22212234456666666654432211121     234566666666665211      122344


Q ss_pred             CCCCCEEEeeCccCCc-----cChhhcCCccccEEecccCcCCc----cCCCC---Ccccceeccccc
Q 022917           70 LSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDC  125 (290)
Q Consensus        70 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~---~~~L~~L~l~~c  125 (290)
                      .++|++|+|++|.++.     ++..+...++|+.|+|++|....    .+...   .++|+.|++++|
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            5667777777776552     34455566667777777665321    11111   245677777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.57  E-value=3.6e-09  Score=101.31  Aligned_cols=104  Identities=23%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             CceeEEEcccCCCcc-cCcccc-CCCCCcEEeccCCCCCCc--CccccCCCCCCcEEeccCCCCCC-----c-CCCCCCC
Q 022917            2 ELLQEIDLFLSGIKE-LPSSIE-HIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCLI-----L-SGLSSLS   71 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~-lp~~i~-~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~l~-----~-~~l~~l~   71 (290)
                      ++|++|+|+++.+++ .+..+. .+++|+.|++++|...+.  ++..+.++++|++|++++|....     + .....++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            355566666555544 222232 455666666665533222  23333345566666666654111     1 1122445


Q ss_pred             CCCEEEeeCcc--CC--ccChhhcCCccccEEecccCc
Q 022917           72 SLKCLELSGHN--FE--SLPTGISQLQRLKCLHLINCN  105 (290)
Q Consensus        72 ~L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~l~~c~  105 (290)
                      +|+.|++++|.  +.  .++..+.++++|+.|++++|.
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence            66666666654  21  222223445666666666553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.57  E-value=2.1e-08  Score=95.99  Aligned_cols=101  Identities=16%  Similarity=0.068  Sum_probs=54.5

Q ss_pred             cCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCC-----CcCCCCCCCCCCEEEeeCccCCccChhhcCCccc
Q 022917           22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-----ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRL   96 (290)
Q Consensus        22 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l-----~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L   96 (290)
                      ..+++|+.|++++|... .+|..+..+++|+.|+++++...     ....++.+++|+.|+++++....+|..+..+++|
T Consensus       217 ~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L  295 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI  295 (592)
T ss_dssp             HHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred             hhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence            33444444444443322 23334444444444444432211     0234566777777777776666777777778888


Q ss_pred             cEEecccCcCCcc-CC---CCCcccceeccc
Q 022917           97 KCLHLINCNMIRS-LP---ELPFCLNYLNTS  123 (290)
Q Consensus        97 ~~L~l~~c~~l~~-lp---~~~~~L~~L~l~  123 (290)
                      +.|++++|..... ++   ...++|+.|++.
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            8888888762211 11   234566666664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=1.3e-07  Score=84.28  Aligned_cols=60  Identities=13%  Similarity=0.127  Sum_probs=44.2

Q ss_pred             CCceeEEEcccCCCc--------------------ccCcc-ccC--------CCCCcEEeccCCCCCCcCccccCCCCCC
Q 022917            1 MELLQEIDLFLSGIK--------------------ELPSS-IEH--------IEGLKCLRLNSCTKLGFLPESLCNLKKL   51 (290)
Q Consensus         1 l~~L~~L~L~~~~l~--------------------~lp~~-i~~--------L~~L~~L~L~~~~~l~~lp~~i~~l~~L   51 (290)
                      +++|+.|+|++|.|+                    .+|+. |..        +++|+.|++.+ .....-+..|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            468999999998888                    34443 556        89999999987 4443334567889999


Q ss_pred             cEEeccCCCC
Q 022917           52 QKLCLSQCRC   61 (290)
Q Consensus        52 ~~L~Ls~~~~   61 (290)
                      +.|++++|..
T Consensus       127 ~~l~l~~n~i  136 (329)
T 3sb4_A          127 KICQIRKKTA  136 (329)
T ss_dssp             CEEEBCCSSC
T ss_pred             ceEEcCCCCc
Confidence            9999988863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.49  E-value=4.6e-08  Score=93.67  Aligned_cols=34  Identities=18%  Similarity=-0.005  Sum_probs=26.8

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNS   34 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~   34 (290)
                      +++|+.|+++++.+.++|..+..+++|+.|+++.
T Consensus       219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred             CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence            4678888888888877777777788888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=1e-06  Score=78.42  Aligned_cols=97  Identities=14%  Similarity=0.156  Sum_probs=52.8

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCc-EEeccCCC-CCCcCCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQ-KLCLSQCR-CLILSGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~-~L~Ls~~~-~l~~~~l~~l~~L~~L~   77 (290)
                      ++|+.|+|++|.++.+|+. |..+++|+.|++.++  +..++ ..|.++++|+ .+++.+.- .+....|..+++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEE
Confidence            4566666666666665554 556666666666654  23332 3455566666 66665511 11134455666666666


Q ss_pred             eeCccCCccCh-hhcCCccccEEe
Q 022917           78 LSGHNFESLPT-GISQLQRLKCLH  100 (290)
Q Consensus        78 Ls~n~l~~lp~-~l~~l~~L~~L~  100 (290)
                      +++|.++.++. .+.++++|+.++
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             eCCCccCccchhhhcCCcchhhhc
Confidence            66666665543 455555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.37  E-value=3e-08  Score=94.92  Aligned_cols=100  Identities=20%  Similarity=0.164  Sum_probs=61.2

Q ss_pred             CCceeEEEcccC-CCcc--cCccccCCCCCcEEeccCCCCCCcCc----cccCCCCCCcEEeccCCC-CCCcCC----CC
Q 022917            1 MELLQEIDLFLS-GIKE--LPSSIEHIEGLKCLRLNSCTKLGFLP----ESLCNLKKLQKLCLSQCR-CLILSG----LS   68 (290)
Q Consensus         1 l~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp----~~i~~l~~L~~L~Ls~~~-~l~~~~----l~   68 (290)
                      +++|++|+|++| .++.  ++..+..+++|++|++++|.+.+..+    .....+++|+.|++++|. .+....    +.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            467888888887 5555  55555678888888888877443322    223366788888888875 222111    12


Q ss_pred             CCCCCCEEEeeCc-cCCccChhhcCCccccEEe
Q 022917           69 SLSSLKCLELSGH-NFESLPTGISQLQRLKCLH  100 (290)
Q Consensus        69 ~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~  100 (290)
                      .+++|+.|++++| .++.+|..+.++++|+.|+
T Consensus       209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred             hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence            3577777777776 2334444444444444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.37  E-value=5.1e-08  Score=88.87  Aligned_cols=105  Identities=17%  Similarity=0.137  Sum_probs=80.9

Q ss_pred             CceeEEEcccCCCccc-----Cccc-cCCCCCcEEeccCCCCCC----cCccccCCCCCCcEEeccCCCCCC------cC
Q 022917            2 ELLQEIDLFLSGIKEL-----PSSI-EHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCLI------LS   65 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~l-----p~~i-~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~------~~   65 (290)
                      ++|++|+|++|.|++.     ...+ ...++|+.|+|++|.+..    .++..+...++|++|+|++|....      ..
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            4799999999999762     2222 346889999999987643    345556788999999999998332      23


Q ss_pred             CCCCCCCCCEEEeeCccCCc-----cChhhcCCccccEEecccCcC
Q 022917           66 GLSSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNM  106 (290)
Q Consensus        66 ~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~l~~c~~  106 (290)
                      .+...++|+.|+|++|.++.     +...+...++|+.|+|++|..
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            45667899999999999873     455667789999999999873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=3.5e-07  Score=74.33  Aligned_cols=91  Identities=18%  Similarity=0.295  Sum_probs=53.6

Q ss_pred             cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCC----CCCCEEEeeCcc-CC--cc
Q 022917           17 LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSL----SSLKCLELSGHN-FE--SL   86 (290)
Q Consensus        17 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l----~~L~~L~Ls~n~-l~--~l   86 (290)
                      +|.....--+|+.||+++|.....--..+..+++|+.|+|++|..++   ...++.+    ++|++|+|++|. ++  .+
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            45432222467777887776543333445677777777777776555   2223332    357777777764 65  23


Q ss_pred             ChhhcCCccccEEecccCcCCc
Q 022917           87 PTGISQLQRLKCLHLINCNMIR  108 (290)
Q Consensus        87 p~~l~~l~~L~~L~l~~c~~l~  108 (290)
                       ..+.++++|+.|++++|..++
T Consensus       133 -~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          133 -IALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             -HHGGGCTTCCEEEEESCTTCC
T ss_pred             -HHHhcCCCCCEEECCCCCCCC
Confidence             245566777777777766443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=2.1e-07  Score=76.25  Aligned_cols=106  Identities=14%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             cccCCCCCcEEeccCC-CCCC----cCccccCCCCCCcEEeccCCCCCC------cCCCCCCCCCCEEEeeCccCCc---
Q 022917           20 SIEHIEGLKCLRLNSC-TKLG----FLPESLCNLKKLQKLCLSQCRCLI------LSGLSSLSSLKCLELSGHNFES---   85 (290)
Q Consensus        20 ~i~~L~~L~~L~L~~~-~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~------~~~l~~l~~L~~L~Ls~n~l~~---   85 (290)
                      .+...++|+.|+|++| .+..    .+...+...++|++|+|++|..-.      ...+...++|++|+|++|.+..   
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3455677777777776 4322    133445566777777777776222      1223344677778887777762   


Q ss_pred             --cChhhcCCccccEEec--ccCcCCcc----CCCC---Ccccceeccccc
Q 022917           86 --LPTGISQLQRLKCLHL--INCNMIRS----LPEL---PFCLNYLNTSDC  125 (290)
Q Consensus        86 --lp~~l~~l~~L~~L~l--~~c~~l~~----lp~~---~~~L~~L~l~~c  125 (290)
                        +...+...++|+.|++  ++|..-..    +.+.   -++|++|++++|
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence              4556666677888887  55543211    1111   245777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=9.9e-07  Score=71.67  Aligned_cols=82  Identities=24%  Similarity=0.295  Sum_probs=64.6

Q ss_pred             ceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcC-ccccCCC----CCCcEEeccCCCCCC---cCCCCCCCC
Q 022917            3 LLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFL-PESLCNL----KKLQKLCLSQCRCLI---LSGLSSLSS   72 (290)
Q Consensus         3 ~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l----~~L~~L~Ls~~~~l~---~~~l~~l~~   72 (290)
                      +|+.||++++.|+.  +. .+..+++|+.|+|++|..++.- -..+..+    ++|+.|+|++|..++   +..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            58999999999877  43 3788999999999999865442 1234444    379999999998777   445678899


Q ss_pred             CCEEEeeCcc-CCc
Q 022917           73 LKCLELSGHN-FES   85 (290)
Q Consensus        73 L~~L~Ls~n~-l~~   85 (290)
                      |+.|++++|. ++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            9999999996 653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=1.6e-06  Score=75.32  Aligned_cols=64  Identities=27%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             CCCCCcEEeccCCCCCCcCCC----CCCCCCCEEEeeCccCCccChhhcCCc--cccEEecccCcCCccCC
Q 022917           47 NLKKLQKLCLSQCRCLILSGL----SSLSSLKCLELSGHNFESLPTGISQLQ--RLKCLHLINCNMIRSLP  111 (290)
Q Consensus        47 ~l~~L~~L~Ls~~~~l~~~~l----~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~l~~c~~l~~lp  111 (290)
                      ++++|+.|+|++|....+..+    +.+++|+.|+|++|.++.+. .+..+.  +|+.|+|++|...+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            345555555555553332222    24555666666666555442 233333  56666666655444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.10  E-value=2.1e-06  Score=77.83  Aligned_cols=121  Identities=14%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             CCceeEEEcccCCCc----------ccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCC
Q 022917            1 MELLQEIDLFLSGIK----------ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGL   67 (290)
Q Consensus         1 l~~L~~L~L~~~~l~----------~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l   67 (290)
                      +++|+.|.+.+....          .++..+..+++|+.|++++|... .++. + .+++|+.|++..|. +..   ..+
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l  213 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDI  213 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHHHHHH
Confidence            468999988764321          24444677899999999987433 3443 4 38899999999876 331   122


Q ss_pred             --CCCCCCCEEEeeCc--c------CCccChhh--cCCccccEEecccCcCCccCC------CCCcccceeccccc
Q 022917           68 --SSLSSLKCLELSGH--N------FESLPTGI--SQLQRLKCLHLINCNMIRSLP------ELPFCLNYLNTSDC  125 (290)
Q Consensus        68 --~~l~~L~~L~Ls~n--~------l~~lp~~l--~~l~~L~~L~l~~c~~l~~lp------~~~~~L~~L~l~~c  125 (290)
                        ..+++|+.|+|+.+  .      +..+...+  ..+++|+.|++.+|......+      ..+++|+.|+++.|
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence              36889999998632  1      22222222  357899999999877542211      13578999999764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.85  E-value=5.6e-06  Score=75.04  Aligned_cols=124  Identities=17%  Similarity=0.120  Sum_probs=83.5

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCcccc--CCCCCCcEEeccCCCCC---C--c----CCC--
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESL--CNLKKLQKLCLSQCRCL---I--L----SGL--   67 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i--~~l~~L~~L~Ls~~~~l---~--~----~~l--   67 (290)
                      +++|+.|+|+++.-..++. +. +++|+.|++..|.........+  ..+++|+.|+|+.+...   .  +    ..+  
T Consensus       171 ~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             CTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            4789999999873224555 43 8999999999876543322233  37899999998642110   0  1    112  


Q ss_pred             CCCCCCCEEEeeCccCC-ccChhh---cCCccccEEecccCcCCc----cCCCC---Ccccceecccccc
Q 022917           68 SSLSSLKCLELSGHNFE-SLPTGI---SQLQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCK  126 (290)
Q Consensus        68 ~~l~~L~~L~Ls~n~l~-~lp~~l---~~l~~L~~L~l~~c~~l~----~lp~~---~~~L~~L~l~~c~  126 (290)
                      ..+++|+.|+|.+|.+. ..+..+   ..+++|+.|+|+.|....    .++..   +++|+.|++++|.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            35789999999999886 233333   357899999999876432    23332   4689999998763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.74  E-value=4.6e-06  Score=68.17  Aligned_cols=104  Identities=15%  Similarity=0.060  Sum_probs=59.8

Q ss_pred             CceeEEEcccC-CCcc-----cCccccCCCCCcEEeccCCCCCCc----CccccCCCCCCcEEeccCCCCCC------cC
Q 022917            2 ELLQEIDLFLS-GIKE-----LPSSIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCLI------LS   65 (290)
Q Consensus         2 ~~L~~L~L~~~-~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~~~~l~------~~   65 (290)
                      ++|++|+|++| .|..     +...+...++|++|+|++|.+...    +...+...++|++|+|++|..-.      ..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            45667777776 6653     344455566677777777654321    22334445667777777765222      23


Q ss_pred             CCCCCCCCCEEEe--eCccCCc-----cChhhcCCccccEEecccCc
Q 022917           66 GLSSLSSLKCLEL--SGHNFES-----LPTGISQLQRLKCLHLINCN  105 (290)
Q Consensus        66 ~l~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~l~~c~  105 (290)
                      .+...++|+.|+|  ++|.+..     +...+...++|+.|++++|.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            3445566777777  6666652     33445555667777776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.74  E-value=3.1e-05  Score=67.14  Aligned_cols=79  Identities=20%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             cCCCCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCCcCCCCCCC--CCCEEEeeCccCC-ccCh-------h
Q 022917           22 EHIEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLILSGLSSLS--SLKCLELSGHNFE-SLPT-------G   89 (290)
Q Consensus        22 ~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~--~L~~L~Ls~n~l~-~lp~-------~   89 (290)
                      ..+++|+.|+|++|.+.+  .+|..+..+++|+.|+|++|......++..+.  +|+.|+|++|.+. .+|.       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            457888888888887765  45556667888888888888865554555555  8888888888876 4552       3


Q ss_pred             hcCCccccEEe
Q 022917           90 ISQLQRLKCLH  100 (290)
Q Consensus        90 l~~l~~L~~L~  100 (290)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56677777776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.60  E-value=0.00045  Score=63.26  Aligned_cols=101  Identities=13%  Similarity=0.139  Sum_probs=54.3

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeC
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      ++|+.+++.+|.++.+|.......+|+.+.+..+ ....-...+.++++|+.+++..+- .+....|.. .+|+.+.+ .
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-p  256 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-P  256 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-E
T ss_pred             ccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-C
Confidence            4566666666666665555333455666665532 222222345566667776665531 011233444 56666666 3


Q ss_pred             ccCCccC-hhhcCCccccEEecccCc
Q 022917           81 HNFESLP-TGISQLQRLKCLHLINCN  105 (290)
Q Consensus        81 n~l~~lp-~~l~~l~~L~~L~l~~c~  105 (290)
                      +.++.++ ..+.++++|+.+.+.++.
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCcc
Confidence            3455553 356777788888777643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.33  E-value=0.00091  Score=61.22  Aligned_cols=116  Identities=14%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCcc-ccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~L   78 (290)
                      .+|+.+.+.. .++.++.. |..+++|+.+++..+  +..++. .+.+ .+|+.+.+..+- .+....|..+++|+.+++
T Consensus       203 ~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l  278 (401)
T 4fdw_A          203 AGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTT  278 (401)
T ss_dssp             CCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEE
T ss_pred             cccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEe
Confidence            4677888874 47777665 778889999998763  334443 3434 678888885431 112456777888888888


Q ss_pred             eCccCC-----ccC-hhhcCCccccEEecccCcCCccCCCC----Ccccceeccc
Q 022917           79 SGHNFE-----SLP-TGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTS  123 (290)
Q Consensus        79 s~n~l~-----~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~  123 (290)
                      .+|.+.     .++ ..+.++++|+.+.+.+  .+..++..    ..+|+.+.+.
T Consensus       279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             ESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEEC
T ss_pred             CCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEEC
Confidence            877654     343 4667778888888773  25556542    2556666664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.33  E-value=0.018  Score=51.49  Aligned_cols=105  Identities=15%  Similarity=0.138  Sum_probs=66.8

Q ss_pred             ceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeC
Q 022917            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +|+.+.+.. .++.+... +..+..|+.+.+..+ ....-...+.++.+|+.+.+..+- .+....+..+.+|+.+.+.+
T Consensus       218 ~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~  295 (379)
T 4h09_A          218 NLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDN  295 (379)
T ss_dssp             SCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECC
T ss_pred             ccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccc
Confidence            455555543 34444433 667788888888663 222223456677888888886542 11134577788899998888


Q ss_pred             ccCCccCh-hhcCCccccEEecccCcCCccCC
Q 022917           81 HNFESLPT-GISQLQRLKCLHLINCNMIRSLP  111 (290)
Q Consensus        81 n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp  111 (290)
                      +.++.++. ++.++.+|+.+.+..+  ++.|+
T Consensus       296 ~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~  325 (379)
T 4h09_A          296 SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQ  325 (379)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred             cccceehhhhhcCCCCCCEEEcCcc--ccEEH
Confidence            88887754 6778888888888532  44444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.30  E-value=0.007  Score=46.19  Aligned_cols=53  Identities=21%  Similarity=0.187  Sum_probs=28.7

Q ss_pred             EEEcccCCCc--ccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917            6 EIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (290)
Q Consensus         6 ~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~   60 (290)
                      .++.++++++  .+|..+.  .+|+.|+|++|.+...-+..+..+++|+.|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4566666776  6665432  356777777755433222334445555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.89  E-value=0.0044  Score=50.94  Aligned_cols=85  Identities=20%  Similarity=0.219  Sum_probs=56.4

Q ss_pred             ccCCCCCcEEeccCCCCCCc-----CccccCCCCCCcEEeccCCCCCC------cCCCCCCCCCCEEEeeCccCC-----
Q 022917           21 IEHIEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCLI------LSGLSSLSSLKCLELSGHNFE-----   84 (290)
Q Consensus        21 i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~~~~l~------~~~l~~l~~L~~L~Ls~n~l~-----   84 (290)
                      +..-+.|+.|+|++++.++.     +-+.+..-+.|+.|+|++|..-.      -..+..=+.|+.|+|++|.|.     
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            34457888899987534432     33455667789999999887322      011223467999999999887     


Q ss_pred             ccChhhcCCccccEEecccCc
Q 022917           85 SLPTGISQLQRLKCLHLINCN  105 (290)
Q Consensus        85 ~lp~~l~~l~~L~~L~l~~c~  105 (290)
                      .+-..+..-+.|+.|+|++|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhhCCceeEEECCCCc
Confidence            234456666789999998653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.59  E-value=0.03  Score=50.50  Aligned_cols=80  Identities=14%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             ccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeCccCCccCh-hhcCCcccc
Q 022917           21 IEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLK   97 (290)
Q Consensus        21 i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~   97 (290)
                      +..+.+|+.+.+.++  +..+ ...+.++++|+.+++..+- .+....|.++.+|+.+++..+ ++.++. ++.++++|+
T Consensus       293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc--cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            667889999998763  3333 3457788999999997541 122466888999999999766 776644 678899999


Q ss_pred             EEeccc
Q 022917           98 CLHLIN  103 (290)
Q Consensus        98 ~L~l~~  103 (290)
                      .+.+..
T Consensus       370 ~i~lp~  375 (394)
T 4fs7_A          370 KVELPK  375 (394)
T ss_dssp             EEEEEG
T ss_pred             EEEECC
Confidence            998865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.56  E-value=0.075  Score=47.87  Aligned_cols=99  Identities=16%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             ccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeCccCCccC-hhhcCCccccE
Q 022917           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC   98 (290)
Q Consensus        21 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~   98 (290)
                      |..+.+|+.+.+.+. ....-...+.++++|+.+.+...- .+....|..+.+|+.+++..+ ++.+. .++.++.+|+.
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            556677777777652 222223445667778877775421 111345667778888877643 55553 35677777877


Q ss_pred             EecccCcCCccCCCC----Ccccceeccc
Q 022917           99 LHLINCNMIRSLPEL----PFCLNYLNTS  123 (290)
Q Consensus        99 L~l~~c~~l~~lp~~----~~~L~~L~l~  123 (290)
                      +.+..+  ++.+++.    ..+|+.+++.
T Consensus       339 i~ip~s--v~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          339 IAIPSS--VTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             EEECTT--CCBCCGGGGTTCTTCCEEEES
T ss_pred             EEECcc--cCEEhHhHhhCCCCCCEEEEC
Confidence            777532  4555532    2344544443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.42  E-value=0.099  Score=46.62  Aligned_cols=90  Identities=17%  Similarity=0.163  Sum_probs=61.0

Q ss_pred             cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEeeCccCCccCh-hhcCCcccc
Q 022917           20 SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLK   97 (290)
Q Consensus        20 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~   97 (290)
                      .+....+|+.+.+..+ ....-...+.++..|+.+.+..+- .+....+..+.+|+.+.+..+ ++.++. .+.++++|+
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            3556778888888652 222233456778899999987652 122456778889999998654 665554 578889999


Q ss_pred             EEecccCcCCccCCC
Q 022917           98 CLHLINCNMIRSLPE  112 (290)
Q Consensus        98 ~L~l~~c~~l~~lp~  112 (290)
                      .+.+.++. ++.|++
T Consensus       290 ~i~l~~~~-i~~I~~  303 (379)
T 4h09_A          290 KVVMDNSA-IETLEP  303 (379)
T ss_dssp             EEEECCTT-CCEECT
T ss_pred             cccccccc-cceehh
Confidence            99987643 555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.30  E-value=0.038  Score=49.83  Aligned_cols=100  Identities=11%  Similarity=0.210  Sum_probs=71.5

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCC-CCCcCCCCCCCCCCEEEe
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR-CLILSGLSSLSSLKCLEL   78 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~-~l~~~~l~~l~~L~~L~L   78 (290)
                      .+|+.+.+..+ ++.+... +.++++|+.+.+.. . +..++ ..+.++.+|+.+.+..+- .+....|.++.+|+.+.+
T Consensus       265 ~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEecccc-cceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEE
Confidence            45667776543 3444443 77889999999974 3 33444 457789999999997641 122466889999999999


Q ss_pred             eCccCCccCh-hhcCCccccEEecccCc
Q 022917           79 SGHNFESLPT-GISQLQRLKCLHLINCN  105 (290)
Q Consensus        79 s~n~l~~lp~-~l~~l~~L~~L~l~~c~  105 (290)
                      ..+ ++.+.. ++.++++|+.+.+.++.
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            654 777754 68899999999998753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.92  E-value=0.022  Score=43.39  Aligned_cols=36  Identities=17%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCC
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTK   37 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~   37 (290)
                      ++|++|+|++|.|+.+|.. +..+++|+.|+|++|..
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            3799999999999999876 78899999999999765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.88  E-value=0.076  Score=47.83  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCC------------CCC----
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR------------CLI----   63 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~------------~l~----   63 (290)
                      .+|+.+.+.. .++.+++. |.++++|+.+++.++  +..++ ..+.++++|+.+.+..+-            ...    
T Consensus        71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~  147 (394)
T 4fs7_A           71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP  147 (394)
T ss_dssp             TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred             CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence            5677777753 46666554 667777887777642  22222 334455555555443221            000    


Q ss_pred             -------cCCCCCCCCCCEEEeeCccCCccC-hhhcCCccccEEeccc
Q 022917           64 -------LSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLIN  103 (290)
Q Consensus        64 -------~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~l~~  103 (290)
                             ...|..+++|+.+.+.++ +..++ ..+.++.+|+.+.+..
T Consensus       148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence                   233556667777776543 23332 2455566666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.50  E-value=0.015  Score=47.73  Aligned_cols=81  Identities=9%  Similarity=0.105  Sum_probs=52.2

Q ss_pred             cCCCCCCcEEeccCCCCCC-------cCCCCCCCCCCEEEeeCccCC-----ccChhhcCCccccEEecccCcCCc----
Q 022917           45 LCNLKKLQKLCLSQCRCLI-------LSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIR----  108 (290)
Q Consensus        45 i~~l~~L~~L~Ls~~~~l~-------~~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~l~----  108 (290)
                      +.+-+.|+.|+|+++..+.       ...+..=+.|+.|+|++|.+.     .+-..+..-+.|+.|+|+.|..-.    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            3456778889998763344       123445578899999998876     344455666789999998876321    


Q ss_pred             cCCC---CCcccceeccccc
Q 022917          109 SLPE---LPFCLNYLNTSDC  125 (290)
Q Consensus       109 ~lp~---~~~~L~~L~l~~c  125 (290)
                      .+-+   .-..|+.|+++++
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence            1111   1246888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 7e-06
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 70  LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQ 129
             SL+ L +S +    LP    +L+RL      + N +  +PELP  L  L+      L+
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLI----ASFNHLAEVPELPQNLKQLHVEYNP-LR 337

Query: 130 SLPKISSCLE 139
             P I   +E
Sbjct: 338 EFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 46  CNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105
                L++L +S  +  ++   +    L+ L  S ++   +P     L++L     +  N
Sbjct: 281 DLPPSLEELNVSNNK--LIELPALPPRLERLIASFNHLAEVPELPQNLKQLH----VEYN 334

Query: 106 MIRSLPELPFCLNYLN 121
            +R  P++P  +  L 
Sbjct: 335 PLREFPDIPESVEDLR 350

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 23  HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82
           +++ L  L L         P  + +L KLQ+L  +  +   +S L++L+++  L    + 
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ 362

Query: 83  FESLPTGISQLQRLKCLHL 101
              L   ++ L R+  L L
Sbjct: 363 ISDLT-PLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 46  CNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105
            NLK L  L L       +S +SSL+ L+ L  + +    + + ++ L  +  L     N
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSA-GHN 361

Query: 106 MIRSLPELPFC--LNYLNTSD 124
            I  L  L     +  L  +D
Sbjct: 362 QISDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           ++ L  + L+ + I ++   +  +  L+ L   +         SL NL  +  L     +
Sbjct: 306 LKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 61  CLILSGLSSLSSLKCLELSG 80
              L+ L++L+ +  L L+ 
Sbjct: 363 ISDLTPLANLTRITQLGLND 382

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.45
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.43
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.4
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.38
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.25
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.25
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.24
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.16
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.13
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.11
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.04
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.93
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.94
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.88
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.71
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.57  E-value=1.8e-15  Score=132.58  Aligned_cols=132  Identities=19%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             ceeEEEcccCCCcc---cCccccCCCCCcEEeccC-CCCCCcCccccCCCCCCcEEeccCCCCCC---------------
Q 022917            3 LLQEIDLFLSGIKE---LPSSIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCLI---------------   63 (290)
Q Consensus         3 ~L~~L~L~~~~l~~---lp~~i~~L~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---------------   63 (290)
                      +++.|+|+++.+++   +|+.+++|++|++|+|++ |.+.+.+|..|+++++|++|+|++|....               
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46777777776663   677777777777777775 45566777777777777777777665221               


Q ss_pred             --------------------------------------------------------------------------------
Q 022917           64 --------------------------------------------------------------------------------   63 (290)
Q Consensus        64 --------------------------------------------------------------------------------   63 (290)
                                                                                                      
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                            


Q ss_pred             ---cCCCCCCCCCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917           64 ---LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        64 ---~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~  134 (290)
                         +..++.+++|+.+++++|.+...+..+..+++|+.|++++|+..+.+|+.   +++|+.|++++|.--+.+|..
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence               11234556666777776666644446666777777778777766677764   366777777776544466653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.3e-14  Score=110.38  Aligned_cols=100  Identities=21%  Similarity=0.237  Sum_probs=90.7

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCC
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFE   84 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~   84 (290)
                      |+|+|++|.|+.++. ++.+++|++|++++|.+ ..+|+.++.+++|+.|++++|....+++++.+++|+.|++++|.++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCcc-CcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccC
Confidence            689999999999986 89999999999999765 6788889999999999999999777888999999999999999999


Q ss_pred             ccCh--hhcCCccccEEecccCcC
Q 022917           85 SLPT--GISQLQRLKCLHLINCNM  106 (290)
Q Consensus        85 ~lp~--~l~~l~~L~~L~l~~c~~  106 (290)
                      .+|.  .+..+++|+.|++++|+.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcC
Confidence            7763  688999999999999873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=9.3e-14  Score=113.89  Aligned_cols=126  Identities=21%  Similarity=0.276  Sum_probs=95.4

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      ++|++|+++++.|++++. ++.+++|++|++++|.+. .+++ ++++++|++|++++|....++.++.+++|+.|++++|
T Consensus        40 ~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~-~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccc-cccCCCcCcCcccccccc-Cccc-ccCCccccccccccccccccccccccccccccccccc
Confidence            578889999988888754 788899999999987654 3443 7888899999998888766677888888888888888


Q ss_pred             cCCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCCCC
Q 022917           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l~~  133 (290)
                      .+..++ .+.++++|+.|++++|. +..++.+  .++|+.|++.+| .++.++.
T Consensus       117 ~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n-~l~~l~~  167 (199)
T d2omxa2         117 QITDID-PLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSN-QVTDLKP  167 (199)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS-CCCCCGG
T ss_pred             cccccc-ccchhhhhHHhhhhhhh-hcccccccccccccccccccc-cccCCcc
Confidence            877654 47778888888888875 4555532  467888888775 4555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=9.6e-14  Score=113.81  Aligned_cols=126  Identities=20%  Similarity=0.296  Sum_probs=105.9

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      |++|++|++++|.++++++ ++.+++|++|++++|.. ..++ .+.++++|+.|++++|.......+..+++|+.|++++
T Consensus        61 l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  137 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  137 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCcCcCccccccccCccc-ccCCccccccccccccc-cccc-ccccccccccccccccccccccccchhhhhHHhhhhh
Confidence            5789999999999999876 89999999999999765 3444 4789999999999999877777888999999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCC--CCcccceeccccccccCCCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~c~~l~~l~  132 (290)
                      |.+..+| .+..+++|+.|++.+|+ +..++.  .+++|+.|++++| .++.++
T Consensus       138 n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N-~i~~i~  188 (199)
T d2omxa2         138 NTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSN-KVSDIS  188 (199)
T ss_dssp             SCCCCCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCG
T ss_pred             hhhcccc-ccccccccccccccccc-ccCCccccCCCCCCEEECCCC-CCCCCc
Confidence            9998876 58889999999999976 555654  3578999999987 466655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.4e-14  Score=110.72  Aligned_cols=107  Identities=16%  Similarity=0.174  Sum_probs=76.6

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCC--CCCCCCCCEEEee
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG--LSSLSSLKCLELS   79 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~--l~~l~~L~~L~Ls   79 (290)
                      .+|++|+|++|.|+.+|..+..+++|+.|++++|.+ ..++ .+..+++|++|++++|....+..  +..+++|+.|+++
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i-~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCC-CccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            357788888888888876566778888888888754 3453 47778888888888887544322  3467788888888


Q ss_pred             CccCCccCh--hhcCCccccEEecccCcCCccCC
Q 022917           80 GHNFESLPT--GISQLQRLKCLHLINCNMIRSLP  111 (290)
Q Consensus        80 ~n~l~~lp~--~l~~l~~L~~L~l~~c~~l~~lp  111 (290)
                      +|.++.++.  .+..+++|+.|++++|. +..+|
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~  128 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNP-VTNKK  128 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGST
T ss_pred             cccccccccccccccccccchhhcCCCc-ccccc
Confidence            888776653  56777888888888876 44444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=3.4e-13  Score=111.41  Aligned_cols=118  Identities=27%  Similarity=0.297  Sum_probs=69.7

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~   82 (290)
                      +|++|+++++.++.++. +..+++|++|++++|.+.+ ++ .++.+++|++|++++|....++.+..+++|+.|++++|.
T Consensus        47 ~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             CccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccccccccccccccccccccc
Confidence            46667777776666653 6667777777777765433 33 255667777777777665445556666666677766666


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCC--CCcccceeccccc
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDC  125 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~c  125 (290)
                      +..++ .+..++.|+.+++++|.. ...+.  .+++|+.++++++
T Consensus       124 ~~~~~-~l~~l~~l~~l~~~~n~l-~~~~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         124 ISDIN-GLVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             CCCCG-GGGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSS
T ss_pred             ccccc-cccccccccccccccccc-cccccccccccccccccccc
Confidence            65554 455556666666655442 22221  1345555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.1e-13  Score=114.21  Aligned_cols=132  Identities=27%  Similarity=0.264  Sum_probs=110.1

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      +++|++|+|++|.|+++|. ++.+++|++|++++|.+ ...+..+.++++|+.|++++|....  ...+..+.+++.|++
T Consensus        54 l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l  131 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (266)
T ss_dssp             CTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccc-ccccccccccccccccc-cccccccccccccccccccccccceeeccccccccccccccc
Confidence            5789999999999999876 68899999999999865 4567788899999999999998554  456778899999999


Q ss_pred             eCccCCccChh-hcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCCCCCC
Q 022917           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        79 s~n~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      ++|.++.+|.. +..+++|+.|++++|+. ..+|.    .+++|++|++++| .++++|....
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~  192 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF  192 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             cccccceeccccccccccchhcccccccc-cccCccccccccccceeecccC-CCcccChhHC
Confidence            99999988764 56789999999999874 44543    2578999999986 4889987554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=5.5e-13  Score=115.85  Aligned_cols=131  Identities=20%  Similarity=0.230  Sum_probs=106.1

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-----------------
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-----------------   63 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-----------------   63 (290)
                      ++|++|+|++|.|+++|+ +|.++++|++|++++|......|..+.++++|++|++++|....                 
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            578999999999999987 58999999999999999887778889999999999999986322                 


Q ss_pred             -----------------------------------------------------------------------------cCC
Q 022917           64 -----------------------------------------------------------------------------LSG   66 (290)
Q Consensus        64 -----------------------------------------------------------------------------~~~   66 (290)
                                                                                                   +..
T Consensus       111 ~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG
T ss_pred             chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhH
Confidence                                                                                         112


Q ss_pred             CCCCCCCCEEEeeCccCCcc-ChhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCCCC
Q 022917           67 LSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus        67 l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      +..++.++.|++++|.++.+ +..+.++++|++|+|++|+ +..+|+.   +++|+.|++++| .++.++..
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~  260 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSN  260 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             hhccccccccccccccccccccccccccccceeeeccccc-ccccccccccccCCCEEECCCC-ccCccChh
Confidence            44566777788888877755 4567889999999999985 6788864   478999999996 58888653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-12  Score=111.39  Aligned_cols=144  Identities=21%  Similarity=0.135  Sum_probs=110.8

Q ss_pred             CceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-cCCCCCCCCCCEEEee
Q 022917            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELS   79 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~~l~~l~~L~~L~Ls   79 (290)
                      ++|++|+|++|.|+++|. .|..+++|++|+|++|.+ ..+| .++.+++|++|++++|.... +..+..+++|+.|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-cccc-ccccccccccccccccccccccccccccccccccccc
Confidence            479999999999999875 489999999999999865 4566 45789999999999998544 5667889999999999


Q ss_pred             CccCCccC-hhhcCCccccEEecccCcCCccCCC----CCcccceeccccccccCCCCCC-CC-CCCCCcccCCCCC
Q 022917           80 GHNFESLP-TGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKI-SS-CLETPSNQTRGNS  149 (290)
Q Consensus        80 ~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~c~~l~~l~~~-~~-~~~~~~~~~~~~~  149 (290)
                      +|.+..++ ..+..+.+++.|++++|. +..+|.    ..+.++.+++++| .+..++.. +. ...+..+.+.+|.
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccceeeccccccccccccccccccc-cceeccccccccccchhcccccc-cccccCccccccccccceeecccCC
Confidence            99988664 456788999999999976 556654    2478999999886 56666543 22 2234444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=8.9e-13  Score=107.29  Aligned_cols=119  Identities=22%  Similarity=0.184  Sum_probs=95.2

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcC-ccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeC
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSG   80 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~   80 (290)
                      .+.++.++++++.+|..+.  +++++|+|++|.+.+.+ +..+.++++|+.|++++|....  +..+..+++|++|+|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3578889999999998764  68999999998886645 4556789999999999998554  46788899999999999


Q ss_pred             ccCCccCh-hhcCCccccEEecccCcCCccCCC-C---Ccccceeccccc
Q 022917           81 HNFESLPT-GISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDC  125 (290)
Q Consensus        81 n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~-~---~~~L~~L~l~~c  125 (290)
                      |+++.+|. .+.++++|+.|+|++|. ++.+|. .   .++|++|+++++
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccc
Confidence            99998865 57889999999999976 555654 2   467888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1.1e-12  Score=106.78  Aligned_cols=106  Identities=18%  Similarity=0.163  Sum_probs=93.0

Q ss_pred             CceeEEEcccCCCcc-cC-ccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFLSGIKE-LP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~-lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      +++++|+|++|.|+. ++ ..++.+++|+.|++++|.+....+..+..+++|+.|++++|....  +..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            478999999999986 43 447899999999999999988888899999999999999998554  45689999999999


Q ss_pred             eeCccCCccCh-hhcCCccccEEecccCcCC
Q 022917           78 LSGHNFESLPT-GISQLQRLKCLHLINCNMI  107 (290)
Q Consensus        78 Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l  107 (290)
                      |++|.++.+|. .+..+++|++|+|++|...
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccc
Confidence            99999998865 5789999999999998754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=9e-13  Score=108.83  Aligned_cols=127  Identities=23%  Similarity=0.265  Sum_probs=108.2

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      |++|++|++++|.|+++++ ++.+++|++|++++|.+ ..+| .+.++++|+.|++++|....+..+..+++|+.+++++
T Consensus        67 l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~  143 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN  143 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCCEEeCCCccccCccc-cccCccccccccccccc-cccc-ccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999886 78999999999999865 4566 5889999999999999877778888999999999999


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCC--CCcccceeccccccccCCCCC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~c~~l~~l~~  133 (290)
                      |.++..+ .+..+++|+.+++++|. +..++.  .+++|+.|++++| .++.++.
T Consensus       144 n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~l~~l~~L~~L~Ls~N-~i~~l~~  195 (210)
T d1h6ta2         144 NKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN-HISDLRA  195 (210)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCBCGG
T ss_pred             ccccccc-ccccccccccccccccc-ccccccccCCCCCCEEECCCC-CCCCChh
Confidence            9998765 57789999999999986 455654  3578999999987 5777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=1.4e-12  Score=108.65  Aligned_cols=77  Identities=25%  Similarity=0.372  Sum_probs=44.0

Q ss_pred             CceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCc
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n   81 (290)
                      .+|+.|++.+|.|++++ .+..+++|+.|++++|.+.+..|  +..+++|+.+++++|....+..++.+++|+.++++++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccccccccccccccccccc
Confidence            45677777777777774 47777777777777765543222  5566666666666655433333333333444333333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.29  E-value=2e-11  Score=106.61  Aligned_cols=57  Identities=21%  Similarity=0.205  Sum_probs=29.9

Q ss_pred             CceeEEEcccCCCcccCccccCC-----------------CCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCC
Q 022917            2 ELLQEIDLFLSGIKELPSSIEHI-----------------EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~i~~L-----------------~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~   60 (290)
                      ++|++|++++|.|+++|..+++|                 +.|++|++++|.+ ..+|. ++.+++|+.|++++|.
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l-~~lp~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC-SSCCC-CTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhhcccccccccccccc-ccccc-hhhhccceeecccccc
Confidence            45566666666666655443221                 2345555555432 34443 4556666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=8.4e-12  Score=94.43  Aligned_cols=97  Identities=22%  Similarity=0.296  Sum_probs=79.7

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc---CCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~---~~l~~l~~L~~L~   77 (290)
                      +++|++|++++|.|+++|+.++.+++|+.|++++|.+ ..+| .+..+++|+.|++++|.....   ..++.+++|+.|+
T Consensus        19 l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          19 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcchhhhhhhhcccccccccccc-cccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            4689999999999999999999999999999999766 4566 589999999999999986553   3467889999999


Q ss_pred             eeCccCCccC---hh-hcCCccccEE
Q 022917           78 LSGHNFESLP---TG-ISQLQRLKCL   99 (290)
Q Consensus        78 Ls~n~l~~lp---~~-l~~l~~L~~L   99 (290)
                      +++|.++..+   .. ...+++|+.|
T Consensus        97 l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          97 LQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999987544   22 3446666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.6e-12  Score=101.05  Aligned_cols=107  Identities=19%  Similarity=0.177  Sum_probs=88.9

Q ss_pred             cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCccCCccChhh-cCCcc
Q 022917           17 LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQR   95 (290)
Q Consensus        17 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~   95 (290)
                      .|. +.+..+|++|+|++|.+ ..+|..+..+++|+.|++++|...+++.++.+++|++|++++|.++.+|..+ ..+++
T Consensus        11 ~~~-~~n~~~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          11 AAQ-YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             SCE-EECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hHh-ccCcCcCcEEECCCCCC-CccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccc
Confidence            444 67888999999999775 5567666789999999999999777888999999999999999999887654 67999


Q ss_pred             ccEEecccCcCCccCCC-----CCcccceecccccc
Q 022917           96 LKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCK  126 (290)
Q Consensus        96 L~~L~l~~c~~l~~lp~-----~~~~L~~L~l~~c~  126 (290)
                      |+.|++++|. +..+++     .+++|++|++++|+
T Consensus        89 L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          89 LTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cccceecccc-ccccccccccccccccchhhcCCCc
Confidence            9999999986 555543     24789999998874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.9e-11  Score=105.04  Aligned_cols=130  Identities=25%  Similarity=0.327  Sum_probs=97.9

Q ss_pred             CceeEEEccc-CCCccc-CccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCc--CCCCCCCCCCEEE
Q 022917            2 ELLQEIDLFL-SGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLE   77 (290)
Q Consensus         2 ~~L~~L~L~~-~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~~l~~l~~L~~L~   77 (290)
                      ..++.+.... +.++.+ |..+..+++|++|++++|......+..+..+++|+.+++++|....+  ..+..+++|+.|+
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcc
Confidence            3456666554 677776 44588899999999999887666666777888999999999875443  4577888999999


Q ss_pred             eeCccCCccC-hhhcCCccccEEecccCcCCccCCCC---CcccceeccccccccCCCC
Q 022917           78 LSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        78 Ls~n~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~  132 (290)
                      +++|+++.+| ..+.++++|+.+++++|+.....|..   +++|+.|+++++. +..++
T Consensus       160 l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~  217 (284)
T d1ozna_         160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALP  217 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred             cccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc-ccccc
Confidence            9999988775 46688899999999988866655654   3678899998864 44444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=3.4e-11  Score=100.06  Aligned_cols=127  Identities=17%  Similarity=0.264  Sum_probs=104.6

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC-----------------
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-----------------   63 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-----------------   63 (290)
                      |++|++|++++|.++++++ +..+++|+++++++|.. ..++ .+..+++|+.+.+++|....                 
T Consensus        62 l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCcEeecCCceeecccc-ccccccccccccccccc-cccc-cccccccccccccccccccccchhccccchhhhhchh
Confidence            6899999999999999765 89999999999999765 4454 57889999999999887443                 


Q ss_pred             -----cCCCCCCCCCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCCCC--CcccceeccccccccCCCCC
Q 022917           64 -----LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLPK  133 (290)
Q Consensus        64 -----~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~l~~  133 (290)
                           ...+..+++|+.|++++|.+...+ .++++++|+.|++++|+ +..++.+  +++|++|++++| .++.++.
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~  212 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNN-QISDVSP  212 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTS-CCCBCGG
T ss_pred             hhhchhhhhccccccccccccccccccch-hhcccccceecccCCCc-cCCChhhcCCCCCCEEECcCC-cCCCCcc
Confidence                 133566788999999999988766 48899999999999985 6677753  589999999998 5887774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=7.9e-14  Score=114.51  Aligned_cols=119  Identities=22%  Similarity=0.246  Sum_probs=76.7

Q ss_pred             eeEEEcccC--CCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCC-CCCCCCEEEeeC
Q 022917            4 LQEIDLFLS--GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLS-SLSSLKCLELSG   80 (290)
Q Consensus         4 L~~L~L~~~--~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~-~l~~L~~L~Ls~   80 (290)
                      ++.+++.+.  .++.+|.++..+++|++|++++|.+ ..++ .+..+++|+.|++++|....++.+. .+++|+.|++++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I-~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEE-SCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCC-CCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            345566553  4666777777778888888877654 4454 4667777888888777643333322 234677788877


Q ss_pred             ccCCccChhhcCCccccEEecccCcCCccCCC-----CCcccceecccccc
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCK  126 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-----~~~~L~~L~l~~c~  126 (290)
                      |.++.++ .+.++++|+.|++++|. +..+++     .+++|+.|++++|+
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCc
Confidence            7777764 46777777788877765 333332     24667777777764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=5.5e-11  Score=105.37  Aligned_cols=120  Identities=24%  Similarity=0.329  Sum_probs=76.7

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCC-----------
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSS-----------   69 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~-----------   69 (290)
                      +++|++|++++|.++++| .+..+++|+.|++++|...+ ++ .++.+++|+.|+++++.......+..           
T Consensus       218 ~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             cCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCC-CC-cccccccCCEeeccCcccCCCCccccccccccccccc
Confidence            367899999999998876 47888999999999987654 33 37788899999998887544333334           


Q ss_pred             -----------CCCCCEEEeeCccCCccChhhcCCccccEEecccCcCCccCCCC--Ccccceeccccc
Q 022917           70 -----------LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDC  125 (290)
Q Consensus        70 -----------l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~c  125 (290)
                                 +++++.|++++|+++.++ .+..+++|+.|++++|+ ++.++.+  +++|+.|++++|
T Consensus       295 n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         295 NQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHN  361 (384)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCC-CCCChhHcCCCCCCEEECCCC
Confidence                       445555555555555444 24555555555555553 3333322  245555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.1e-11  Score=93.61  Aligned_cols=103  Identities=20%  Similarity=0.145  Sum_probs=80.4

Q ss_pred             eeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCc-cccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEeeC
Q 022917            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLELSG   80 (290)
Q Consensus         4 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~Ls~   80 (290)
                      .+.++.++++++++|..+..+++|+.|++++++.+..++ ..|.++++|+.|++++|....  +..|..+++|++|+|++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            456778888888888888888899999998776566665 457888889999998887444  34577888888888888


Q ss_pred             ccCCccChhhcCCccccEEecccCcC
Q 022917           81 HNFESLPTGISQLQRLKCLHLINCNM  106 (290)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~c~~  106 (290)
                      |+++.+|..+....+|+.|+|++|..
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            88888887766666788888888763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=7.5e-11  Score=104.48  Aligned_cols=127  Identities=22%  Similarity=0.250  Sum_probs=96.0

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      +++++.++++++.++++++ .+..++|+.|++++|.+. .+| .+..+++|+.|++++|.......++.+++|+.|++++
T Consensus       196 l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  272 (384)
T d2omza2         196 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA  272 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             ccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCC-Ccc-hhhcccccchhccccCccCCCCcccccccCCEeeccC
Confidence            4678999999999999766 677899999999998654 444 6788999999999999877777789999999999999


Q ss_pred             ccCCccCh---------------------hhcCCccccEEecccCcCCccCCC--CCcccceeccccccccCCCC
Q 022917           81 HNFESLPT---------------------GISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP  132 (290)
Q Consensus        81 n~l~~lp~---------------------~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~c~~l~~l~  132 (290)
                      +.++.++.                     .+..+++++.|++++|+ +..++.  .+++|+.|++++| .++.++
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~-l~~l~~l~~l~~L~~L~L~~n-~l~~l~  345 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFANN-KVSDVS  345 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS-CCCCCG
T ss_pred             cccCCCCccccccccccccccccccccccccchhcccCeEECCCCC-CCCCcccccCCCCCEEECCCC-CCCCCh
Confidence            98876542                     23445566666666654 334432  3467777777776 455555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.2e-12  Score=110.35  Aligned_cols=159  Identities=21%  Similarity=0.163  Sum_probs=101.9

Q ss_pred             CceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCC----CCCCCCCCE
Q 022917            2 ELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG----LSSLSSLKC   75 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~----l~~l~~L~~   75 (290)
                      .+|++|+++++.++.  ++..+..+++|++|++++|......+..++.+++|+.|++++|..++-..    ...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            468888998887765  55557788899999999887766667778888889999999887665211    245778888


Q ss_pred             EEeeCcc-CC--ccChhhcC-CccccEEecccCcC-Cc--cCC---CCCcccceeccccccccCCCCCCCCCCCCCcccC
Q 022917           76 LELSGHN-FE--SLPTGISQ-LQRLKCLHLINCNM-IR--SLP---ELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQT  145 (290)
Q Consensus        76 L~Ls~n~-l~--~lp~~l~~-l~~L~~L~l~~c~~-l~--~lp---~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~  145 (290)
                      |++++|. ++  .++..+.. .++|+.|++++|.. +.  .+.   ...++|++|++++|..++.-..... ...+    
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~~~----  200 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLN----  200 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCT----
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh-cccC----
Confidence            8888864 54  33334443 35788888877632 21  111   2236788888888776652211000 0111    


Q ss_pred             CCCCCCCcEEEEeCCcCchhhhhhh
Q 022917          146 RGNSYLPVMFKFVNCVKLHKGTERN  170 (290)
Q Consensus       146 ~~~~~~~~~l~~~~C~~L~~~~~~~  170 (290)
                           ....+.+.+|.++++.....
T Consensus       201 -----~L~~L~L~~C~~i~~~~l~~  220 (284)
T d2astb2         201 -----YLQHLSLSRCYDIIPETLLE  220 (284)
T ss_dssp             -----TCCEEECTTCTTCCGGGGGG
T ss_pred             -----cCCEEECCCCCCCChHHHHH
Confidence                 23577778887776654433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-10  Score=99.22  Aligned_cols=126  Identities=24%  Similarity=0.275  Sum_probs=103.8

Q ss_pred             CCceeEEEcccCCCcccCc-cccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEE
Q 022917            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLE   77 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~   77 (290)
                      |++|++|++++|.+..++. .+....+|+.+++++|.+.+..+..+..+++|+.|++++|....  +..+..+++|+.++
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            5789999999999988655 47788999999999988765556678889999999999997443  46688999999999


Q ss_pred             eeCccCCcc-ChhhcCCccccEEecccCcCCccCCC---CCcccceecccccc
Q 022917           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE---LPFCLNYLNTSDCK  126 (290)
Q Consensus        78 Ls~n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~---~~~~L~~L~l~~c~  126 (290)
                      +++|.++.+ |..+.++++|++|++++|...+..|.   ..++|++|++++++
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            999999855 78899999999999999875443332   24779999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7e-10  Score=92.40  Aligned_cols=132  Identities=19%  Similarity=0.212  Sum_probs=88.3

Q ss_pred             CceeEEEcccCCCcccCcc-ccCCCCCcEEeccCCCCCCcCcc-c-------------------------cCCCCCCcEE
Q 022917            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE-S-------------------------LCNLKKLQKL   54 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~-------------------------i~~l~~L~~L   54 (290)
                      +++++|++++|.|+.+|+. |.++++|++|++++|.....+|. .                         +.++++|+.|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            3688889988888888764 78888899998888766544322 2                         3344555555


Q ss_pred             eccCCCCCCc---------------------------CCCCCC-CCCCEEEeeCccCCccChhhcCCccccEEecccCcC
Q 022917           55 CLSQCRCLIL---------------------------SGLSSL-SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNM  106 (290)
Q Consensus        55 ~Ls~~~~l~~---------------------------~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~l~~c~~  106 (290)
                      ++++|.....                           ..+..+ ..++.|++++|.++.++....+..+++.+....++.
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            5555542220                           112223 256777777777777776666667777776556667


Q ss_pred             CccCCCC----CcccceeccccccccCCCCCC
Q 022917          107 IRSLPEL----PFCLNYLNTSDCKRLQSLPKI  134 (290)
Q Consensus       107 l~~lp~~----~~~L~~L~l~~c~~l~~l~~~  134 (290)
                      ++.+|..    +++|+.|+++++. ++.+|..
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~  219 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTR-IHSLPSY  219 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSC-CCCCCSS
T ss_pred             cccccHHHhcCCCCCCEEECCCCc-CCccCHH
Confidence            8888762    4789999998864 7777753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=5.9e-10  Score=96.21  Aligned_cols=123  Identities=21%  Similarity=0.226  Sum_probs=107.2

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC--cCCCCCCCCCCEEEe
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI--LSGLSSLSSLKCLEL   78 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~~l~~l~~L~~L~L   78 (290)
                      +++|+.+++++|.++.+|..+  +++|+.|++++|......+..+.+++.++.|++++|....  +..+..+++|++|+|
T Consensus       149 l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             CTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             ccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence            467999999999999998764  6899999999999988888899999999999999997544  456788999999999


Q ss_pred             eCccCCccChhhcCCccccEEecccCcCCccCCC----------CCcccceecccccc
Q 022917           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE----------LPFCLNYLNTSDCK  126 (290)
Q Consensus        79 s~n~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~----------~~~~L~~L~l~~c~  126 (290)
                      ++|+++.+|.++.++++|+.|+|++|+ ++.++.          .+.+|+.|++.+++
T Consensus       227 ~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         227 NNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            999999999999999999999999976 767753          13678999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=2e-09  Score=93.52  Aligned_cols=111  Identities=26%  Similarity=0.386  Sum_probs=87.2

Q ss_pred             ceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeCcc
Q 022917            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (290)
Q Consensus         3 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~n~   82 (290)
                      ++++|+|++++++++|+.   +++|++|++++|.+ ..+|..   +.+|+.|++++|....++.+.  ++|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l-~~lp~~---~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCC-cccccc---hhhhhhhhhhhcccchhhhhc--cccccccccccc
Confidence            588999999999999974   56899999998754 578864   468999999999854444332  469999999999


Q ss_pred             CCccChhhcCCccccEEecccCcCCccCCCCCcccceecccc
Q 022917           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD  124 (290)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~  124 (290)
                      ++.+|. ++.+++|+.|++++|. +...|.....+..+.+.+
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~~~  149 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGN  149 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cccccc-hhhhccceeecccccc-ccccccccccccchhhcc
Confidence            999995 6889999999999876 455565555566655544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=8.3e-11  Score=101.26  Aligned_cols=130  Identities=22%  Similarity=0.309  Sum_probs=97.0

Q ss_pred             CCceeEEEcccCCCcc-cCccccCCCCCcEEeccCCCCCCc--CccccCCCCCCcEEeccCCCCCCcC----CCC-CCCC
Q 022917            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCLILS----GLS-SLSS   72 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~l~~~----~l~-~l~~   72 (290)
                      +++|++|+|+++.+++ .+..+..+++|+.|++++|..++.  +..-..++++|++|++++|..++..    .+. ..++
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            4789999999998876 566688899999999999876543  2222356899999999999766521    122 2468


Q ss_pred             CCEEEeeCcc--CC--ccChhhcCCccccEEecccCcCCc--cCCCC--CcccceeccccccccCC
Q 022917           73 LKCLELSGHN--FE--SLPTGISQLQRLKCLHLINCNMIR--SLPEL--PFCLNYLNTSDCKRLQS  130 (290)
Q Consensus        73 L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~--~~~L~~L~l~~c~~l~~  130 (290)
                      |+.|+++++.  ++  .+.....++++|++|++++|..++  .+..+  .++|++|++++|..+..
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh
Confidence            9999999863  54  455556788999999999987654  22222  46899999999987653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.93  E-value=3.4e-10  Score=98.16  Aligned_cols=112  Identities=21%  Similarity=0.230  Sum_probs=92.5

Q ss_pred             CCCcEEeccCCCCCC--cCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEeeCccCCc-cChhhcCCccccE
Q 022917           25 EGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLELSGHNFES-LPTGISQLQRLKC   98 (290)
Q Consensus        25 ~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~   98 (290)
                      .+++.|+|+++...+  .+|..++++++|++|+|++|+.+.   |..++++++|++|+|++|++.. .|..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999988876  589999999999999999854332   6789999999999999999985 4566888999999


Q ss_pred             EecccCcCCccCCCC---CcccceeccccccccCCCCCCCC
Q 022917           99 LHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISS  136 (290)
Q Consensus        99 L~l~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~~~  136 (290)
                      +++++|.....+|..   ++.++.++++++.....+|....
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~  170 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccc
Confidence            999999988888865   46788899988766666665443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.2e-09  Score=81.79  Aligned_cols=101  Identities=21%  Similarity=0.135  Sum_probs=80.1

Q ss_pred             CCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEeeCccCCccC-hhhcCCccccE
Q 022917           23 HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC   98 (290)
Q Consensus        23 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~   98 (290)
                      .......++.+++.. ...|..+..+++|+.|++++++.++   ...|..+++|+.|++++|+++.++ ..+..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~-~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGA-LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCC-CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCC-ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            344556788887554 5668888899999999998876555   567999999999999999999884 56899999999


Q ss_pred             EecccCcCCccCCCC---Ccccceeccccc
Q 022917           99 LHLINCNMIRSLPEL---PFCLNYLNTSDC  125 (290)
Q Consensus        99 L~l~~c~~l~~lp~~---~~~L~~L~l~~c  125 (290)
                      |+|++|+ ++.+|..   ..+|+.|+++++
T Consensus        85 L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          85 LNLSFNA-LESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             EECCSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred             eeccCCC-CcccChhhhccccccccccCCC
Confidence            9999977 6677753   236777877765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.87  E-value=1.3e-11  Score=101.02  Aligned_cols=103  Identities=20%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             CCceeEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCccccCCCCCCcEEeccCCCCCCcCCCCCCCCCCEEEeeC
Q 022917            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~~l~~l~~L~~L~Ls~   80 (290)
                      |++|++|+|++|.|++++. +..+++|+.|++++|.+ ..+|.....+++|+.|++++|....++.+..+++|+.|++++
T Consensus        47 L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESE
T ss_pred             ccccceeECcccCCCCccc-ccCCccccChhhccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            3456666666666666643 56666666666666543 344443333455666666666544444455556666666666


Q ss_pred             ccCCccCh--hhcCCccccEEecccCc
Q 022917           81 HNFESLPT--GISQLQRLKCLHLINCN  105 (290)
Q Consensus        81 n~l~~lp~--~l~~l~~L~~L~l~~c~  105 (290)
                      |.++.++.  .+..+++|+.|++++|+
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             chhccccccccccCCCccceeecCCCc
Confidence            66665542  45566666666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.4e-07  Score=78.00  Aligned_cols=125  Identities=20%  Similarity=0.284  Sum_probs=91.6

Q ss_pred             eEEEcccCCCcccCccccCCCCCcEEeccCCCCCCcCcc-ccCCCCCCcEEeccCCCCCC---cCCCCCCCCCCEEEeeC
Q 022917            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCLI---LSGLSSLSSLKCLELSG   80 (290)
Q Consensus         5 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~---~~~l~~l~~L~~L~Ls~   80 (290)
                      +.++.++.+++++|..+.  +++++|++++|.+ ..+|. .+.++++|++|++++|....   +..+..+++++.+.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i-~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCC-CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcC-CccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            578888889999998764  5899999999775 45554 57899999999999998654   34577899999999876


Q ss_pred             -ccCCcc-ChhhcCCccccEEecccCcCCccCCC--CCcccceecc--ccccccCCCCC
Q 022917           81 -HNFESL-PTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNT--SDCKRLQSLPK  133 (290)
Q Consensus        81 -n~l~~l-p~~l~~l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l--~~c~~l~~l~~  133 (290)
                       |++..+ +..+.++++|+.|++.+|. +...+.  .+.+++.+..  .++..+..++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER  145 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECT
T ss_pred             cccccccccccccccccccccccchhh-hcccccccccccccccccccccccccccccc
Confidence             456644 4567999999999999976 444544  2344444432  23345555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=4.7e-08  Score=87.45  Aligned_cols=105  Identities=19%  Similarity=0.242  Sum_probs=81.0

Q ss_pred             CceeEEEcccCCCcc--cCccccCCCCCcEEeccCCCCCC----cCccccCCCCCCcEEeccCCCCCC------cCCCC-
Q 022917            2 ELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCLI------LSGLS-   68 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~------~~~l~-   68 (290)
                      .+|++||++++++++  +..-+..+++++.|+|++|.+..    .++..+..+++|+.|+|++|....      ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            479999999999987  44446778999999999997642    344556789999999999987321      12232 


Q ss_pred             CCCCCCEEEeeCccCCc-----cChhhcCCccccEEecccCcC
Q 022917           69 SLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNM  106 (290)
Q Consensus        69 ~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~l~~c~~  106 (290)
                      ...+|+.|++++|.++.     ++..+..+++|++|++++|..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            23579999999999873     456778899999999998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.94  E-value=2.5e-06  Score=74.06  Aligned_cols=125  Identities=17%  Similarity=0.090  Sum_probs=86.1

Q ss_pred             CceeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCCCc-----CccccCCCCCCcEEeccCCCCCC------cC
Q 022917            2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCLI------LS   65 (290)
Q Consensus         2 ~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~~~~l~------~~   65 (290)
                      +.|+.|++++|.++.     +...+...++|+.|++++|.+...     +...+...++|+.|++++|....      ..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            468889999888764     444566788999999999876431     23446678899999999987322      23


Q ss_pred             CCCCCCCCCEEEeeCccCCc-----cChhhcC--CccccEEecccCcCCc----cCCC----CCcccceecccccc
Q 022917           66 GLSSLSSLKCLELSGHNFES-----LPTGISQ--LQRLKCLHLINCNMIR----SLPE----LPFCLNYLNTSDCK  126 (290)
Q Consensus        66 ~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~--l~~L~~L~l~~c~~l~----~lp~----~~~~L~~L~l~~c~  126 (290)
                      .+...++|++|++++|.++.     +-..+..  .+.|+.|++++|....    .+..    -.+.|+.|+++++.
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            45678899999999998873     2223333  3579999999986321    1121    13568888888754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.88  E-value=1e-06  Score=76.63  Aligned_cols=126  Identities=17%  Similarity=0.227  Sum_probs=90.5

Q ss_pred             CCceeEEEcccCCCcc-----cCc---------cccCCCCCcEEeccCCCCCC----cCccccCCCCCCcEEeccCCCCC
Q 022917            1 MELLQEIDLFLSGIKE-----LPS---------SIEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL   62 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-----lp~---------~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~l   62 (290)
                      .++|++|++++|.+..     +..         .....+.|+.+++++|....    .+...+...+.|+.|++++|...
T Consensus       120 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             cccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccc
Confidence            3689999999998742     111         12456789999999976532    23334556789999999999743


Q ss_pred             C-------cCCCCCCCCCCEEEeeCccCC-----ccChhhcCCccccEEecccCcCCcc--------CCCC-Ccccceec
Q 022917           63 I-------LSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIRS--------LPEL-PFCLNYLN  121 (290)
Q Consensus        63 ~-------~~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~l~~c~~l~~--------lp~~-~~~L~~L~  121 (290)
                      .       ...+...++|+.|++++|.++     .+...+...++|+.|++++|.....        +... ...|++|+
T Consensus       200 ~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~  279 (344)
T d2ca6a1         200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR  279 (344)
T ss_dssp             HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred             ccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEE
Confidence            2       244677889999999999975     3556778899999999999874321        1111 25799999


Q ss_pred             ccccc
Q 022917          122 TSDCK  126 (290)
Q Consensus       122 l~~c~  126 (290)
                      +++|.
T Consensus       280 ls~N~  284 (344)
T d2ca6a1         280 LQYNE  284 (344)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            99874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.3e-06  Score=66.58  Aligned_cols=80  Identities=20%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             ccCCCCCcEEeccCCCCCCc--CccccCCCCCCcEEeccCCCCCCcCCCC--CCCCCCEEEeeCccCCccC--------h
Q 022917           21 IEHIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCLILSGLS--SLSSLKCLELSGHNFESLP--------T   88 (290)
Q Consensus        21 i~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~l~~~~l~--~l~~L~~L~Ls~n~l~~lp--------~   88 (290)
                      ...+++|++|++++|.+...  ++..+..+++|+.|++++|....++++.  ...+|+.|++++|.+....        .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            35688899999999876432  2344567889999999999855544322  3346899999999987432        1


Q ss_pred             hhcCCccccEEe
Q 022917           89 GISQLQRLKCLH  100 (290)
Q Consensus        89 ~l~~l~~L~~L~  100 (290)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            256789999886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.2e-06  Score=68.34  Aligned_cols=64  Identities=27%  Similarity=0.266  Sum_probs=42.6

Q ss_pred             CCCCCCcEEeccCCCCCCcCC----CCCCCCCCEEEeeCccCCccCh-hhcCCccccEEecccCcCCcc
Q 022917           46 CNLKKLQKLCLSQCRCLILSG----LSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCNMIRS  109 (290)
Q Consensus        46 ~~l~~L~~L~Ls~~~~l~~~~----l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~l~~c~~l~~  109 (290)
                      ..+++|++|+|++|.......    +..+++|+.|++++|.++.+++ ...+...|+.|++++|.....
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            457788888888887544332    3356788888888888887764 222334678888888775443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=2.1e-05  Score=61.28  Aligned_cols=35  Identities=17%  Similarity=0.106  Sum_probs=17.4

Q ss_pred             CCCCCEEEeeCccCCc-----cChhhcCCccccEEecccC
Q 022917           70 LSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINC  104 (290)
Q Consensus        70 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~l~~c  104 (290)
                      .+.|+.|+|++|.++.     +-..+..-++|+.|++++|
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3455555555555541     2223444455666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2.1e-05  Score=69.63  Aligned_cols=84  Identities=27%  Similarity=0.256  Sum_probs=63.7

Q ss_pred             CCceeEEEcccCCCcc-----cCccccCCCCCcEEeccCCCCCC----cCccccC-CCCCCcEEeccCCCCCC------c
Q 022917            1 MELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLG----FLPESLC-NLKKLQKLCLSQCRCLI------L   64 (290)
Q Consensus         1 l~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~-~l~~L~~L~Ls~~~~l~------~   64 (290)
                      |+++++|+|++|.|+.     +...+..+++|+.|+|++|.+..    .+...+. ...+|++|++++|....      .
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            4689999999999974     56667889999999999986531    1222332 23579999999997332      2


Q ss_pred             CCCCCCCCCCEEEeeCccCC
Q 022917           65 SGLSSLSSLKCLELSGHNFE   84 (290)
Q Consensus        65 ~~l~~l~~L~~L~Ls~n~l~   84 (290)
                      ..+..+++|++|++++|.++
T Consensus       106 ~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHTTSCTTCCEEECCSSBCH
T ss_pred             chhhccccccccccccccch
Confidence            35778899999999999875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.71  E-value=0.00015  Score=55.85  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=43.5

Q ss_pred             cCCCCCcEEeccCCCCCCc-----CccccCCCCCCcEEeccCCCCCC-------cCCCCCCCCCCEEEeeCccCC-----
Q 022917           22 EHIEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCLI-------LSGLSSLSSLKCLELSGHNFE-----   84 (290)
Q Consensus        22 ~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~~~~l~-------~~~l~~l~~L~~L~Ls~n~l~-----   84 (290)
                      .+.++|+.|++++++.++.     +-..+...++|+.|++++|. ++       ...+...++++.+++++|.+.     
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            3456666676665432221     12234456667777777664 32       122334556777777776654     


Q ss_pred             ccChhhcCCccccEEeccc
Q 022917           85 SLPTGISQLQRLKCLHLIN  103 (290)
Q Consensus        85 ~lp~~l~~l~~L~~L~l~~  103 (290)
                      .+-..+...++|+.++|..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCC
T ss_pred             HHHHHHHhCccccEEeecc
Confidence            2334555666677665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.68  E-value=0.00032  Score=54.19  Aligned_cols=102  Identities=13%  Similarity=0.028  Sum_probs=59.3

Q ss_pred             CceeEEEcccC-CCcc-----cCccccCCCCCcEEeccCCCCCC----cCccccCCCCCCcEEeccCCCCCC------cC
Q 022917            2 ELLQEIDLFLS-GIKE-----LPSSIEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCLI------LS   65 (290)
Q Consensus         2 ~~L~~L~L~~~-~l~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~------~~   65 (290)
                      ++|++|+|+++ .++.     +-..+...++|+.|++++|.+..    .+...+...+.|+.|++++|....      ..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            46778888763 4543     22335566778888888776532    222334456678888888775222      23


Q ss_pred             CCCCCCCCCEEEeeCccCCcc--------ChhhcCCccccEEeccc
Q 022917           66 GLSSLSSLKCLELSGHNFESL--------PTGISQLQRLKCLHLIN  103 (290)
Q Consensus        66 ~l~~l~~L~~L~Ls~n~l~~l--------p~~l~~l~~L~~L~l~~  103 (290)
                      .+..-++|++|++++|.+..+        ...+..-++|+.|+++.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            455667788888877764433        22334445555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.59  E-value=0.0082  Score=45.58  Aligned_cols=102  Identities=16%  Similarity=0.061  Sum_probs=51.9

Q ss_pred             CceeEEEccc-CCCcc-----cCccccCCCCCcEEeccCCCCCCc----CccccCCCCCCcEEeccCCCCCC------cC
Q 022917            2 ELLQEIDLFL-SGIKE-----LPSSIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCLI------LS   65 (290)
Q Consensus         2 ~~L~~L~L~~-~~l~~-----lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~~~~l~------~~   65 (290)
                      ++|++|+|++ +.++.     +-..+...++|+.|++++|.....    +-..+...++++.+++++|....      ..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4566677765 34543     223344566677777776644322    11233445666777766665222      13


Q ss_pred             CCCCCCCCCEEEee--CccCC-----ccChhhcCCccccEEeccc
Q 022917           66 GLSSLSSLKCLELS--GHNFE-----SLPTGISQLQRLKCLHLIN  103 (290)
Q Consensus        66 ~l~~l~~L~~L~Ls--~n~l~-----~lp~~l~~l~~L~~L~l~~  103 (290)
                      .+...++|+.++|+  +|.+.     .+-..+...++|+.|++..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            34455666655443  33443     2333444555666665544