Citrus Sinensis ID: 022963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEccHHHHcccccccHEcccccccc
Coil and Loop (DISEMBL)
mfhapalrswisssrspiimaskskthrlhqlsGTALqsiakrprtittesYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKElqgtdfwklrrayspgVQEYVEAATFCKFCRTGTLLDLeelnagllplsdpaieplqiNVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVplmdnnsdmkTKMDTMLQSVLKIENACLSVHvrgseytllgssdpsflmgvpdmqs
Flexible Loop (DISEMBL)
mfhapalrswisssrspIIMASkskthrlhqlsgtalqsiakrprtittesyMKDAFANYAGYLNELNEKRErvvkssrditinskkvifqvhrisrdnkeevLKKAEADLEAVKDQYISRLvkelqgtdfwkLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEytllgssdpsflmgvpdmqs
Low Complexity Region (SEG)
MFHAPALrswisssrspiiMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTlldleelnagllplSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Disordered region (IsUnstruct)
*********************************************TITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR*****VLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS**KTKMDTMLQSVLKIENACLSVHVRGSEYTLL****************
Disordered Region (DISOPRED)
********************************************************FANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDP****G******
Disordered Region (DISEMBL)
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Disordered Region (DISPRO)
**************************************************SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLM*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISxxxxxxxxxxxxxxxxxxxxxYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9JHB5	290	Translin-associated prote	yes	no	0.719	0.717	0.370	7e-35
Q4R599	290	Translin-associated prote	N/A	no	0.719	0.717	0.370	1e-34
Q9QZE7	290	Translin-associated prote	yes	no	0.719	0.717	0.370	2e-34
Q5RC21	290	Translin-associated prote	yes	no	0.719	0.717	0.365	4e-34
Q99598	290	Translin-associated prote	yes	no	0.719	0.717	0.365	4e-34
O74955	231	Translin-associated prote	yes	no	0.674	0.844	0.306	1e-20

>sp|Q9JHB5|TSNAX_RAT Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 141/235 (60%), Gaps = 27/235 (11%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+L ++E+ L+ V
Sbjct: 38  AFKSFQQELDTRHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 174
           + Q + ++ +EL G D  +  RA + G+QEYVEA +F  F RT +L+ +EE+N  L   +
Sbjct: 98  R-QKMLQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIRTRSLISMEEINRQLTFTT 156

Query: 175 DPAIEP-----------------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 217
           D + +                  L+I   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 DDSGKESKAPPADGQDKQLVTWRLKITPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 218 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 269
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLSKVENACYALKVRGSE 266

Possible role in spermatogenesis.
Rattus norvegicus (taxid: 10116)

>sp|Q4R599|TSNAX_MACFA Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 141/235 (60%), Gaps = 27/235 (11%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 171
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 172 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 217
                    P SD   E      L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 DDNGKENKTPSSDTQDEQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 218 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 269
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

Possible role in spermatogenesis.

Macaca fascicularis (taxid: 9541)

>sp|Q9QZE7|TSNAX_MOUSE Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 141/235 (60%), Gaps = 27/235 (11%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+L ++E+ L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 174
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ +EE+N  L   +
Sbjct: 98  R-QKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKTRSLISMEEINKQLTFTA 156

Query: 175 D--------PAIEP---------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 217
           +        P  E          L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 EDSGKESKTPPAEGQEKQLVTWRLKLTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 218 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 269
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

Possible role in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q5RC21|TSNAX_PONAB Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 141/235 (60%), Gaps = 27/235 (11%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 171
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 172 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 217
                    P SD   +      L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 218 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 269
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

Possible role in spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q99598|TSNAX_HUMAN Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 141/235 (60%), Gaps = 27/235 (11%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 171
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 172 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 217
                    P SD   +      L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 218 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 269
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

Possible role in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|O74955|TSNAX_SCHPO Translin-associated protein X homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.09c PE=3 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 30/225 (13%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR----------DNKEE 102
           M++ F ++  +L E  +KRE++++ SR+ITI SK++IF +H+ S           D    
Sbjct: 1   MEEEFLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSI 60

Query: 103 VLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLD 162
             KK   +LE++K        +EL G +  K   A + G+QEYVEA TF  + +TGTLL 
Sbjct: 61  FEKKIHKELESLK--------RELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLS 112

Query: 163 LEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFS 222
            +          D +   + IN  DY+LG+ D+TGE+MR  +   S   ++   +  +F 
Sbjct: 113 CK----------DSSFR-ISINFIDYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFL 161

Query: 223 RDIYRELTLVVPLMDN-NSDMKTKMDTMLQSVLKIENACLSVHVR 266
           R +++  + +  L     S+++ K+  M  S+ K+E  C S  +R
Sbjct: 162 RGLHKNCSEIEHLPSKVKSELQQKLSVMENSISKVEGICYSKILR 206

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
359386148	270	translin-associated factor X [Citrus sin	0.934	1.0	0.985	1e-154
449452825	284	PREDICTED: translin-associated protein X	0.934	0.950	0.775	1e-118
297738200	270	unnamed protein product [Vitis vinifera]	0.913	0.977	0.766	1e-115
225424991	282	PREDICTED: translin-associated protein X	0.913	0.936	0.766	1e-115
224108631	307	predicted protein [Populus trichocarpa]	0.930	0.876	0.724	1e-114
357516891	315	Translin-associated protein X [Medicago	0.972	0.892	0.671	1e-114
363807852	281	uncharacterized protein LOC100776523 [Gl	0.941	0.967	0.701	1e-111
30678076	287	translin-like protein [Arabidopsis thali	0.937	0.944	0.692	1e-109
297818030	287	translin family protein [Arabidopsis lyr	0.920	0.926	0.701	1e-109
255541928	257	translin associated factor X, putative [	0.844	0.949	0.770	1e-109

>gi|359386148|gb|AEV43363.1| translin-associated factor X [Citrus sinensis]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/270 (98%), Positives = 268/270 (99%)

Query: 20  MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSR 79
           MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVK+SR
Sbjct: 1   MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKASR 60

Query: 80  DITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYS 139
           DITINSKKVIFQVHRISRDNKEEVLKKAEADL AVKDQYISRLVKELQGTDFWKLRRAYS
Sbjct: 61  DITINSKKVIFQVHRISRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYS 120

Query: 140 PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGEL 199
           PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINV DYLLGLADLTGEL
Sbjct: 121 PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVLDYLLGLADLTGEL 180

Query: 200 MRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 259
           MRLAIGRISDGEL+FAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA
Sbjct: 181 MRLAIGRISDGELDFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 240

Query: 260 CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS 289
           CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Sbjct: 241 CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS 270

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452825|ref|XP_004144159.1| PREDICTED: translin-associated protein X-like [Cucumis sativus] gi|449523668|ref|XP_004168845.1| PREDICTED: translin-associated protein X-like [Cucumis sativus]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/272 (77%), Positives = 238/272 (87%), Gaps = 2/272 (0%)

Query: 19  IMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSS 78
           +MASK K   LH ++ TA+QS  KR R ++T+S MKDAFA YA YLN LN+KRERVVK+S
Sbjct: 12  LMASKPKPQLLHTIAETAVQSSVKRARILSTQSSMKDAFAKYAEYLNNLNDKRERVVKAS 71

Query: 79  RDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAY 138
           RDIT+NSKKVIFQVHRIS+ NKEEVL+KAE DL  V   +ISRLVKELQGTDFWKLRRAY
Sbjct: 72  RDITMNSKKVIFQVHRISKQNKEEVLEKAEKDLGHVATWHISRLVKELQGTDFWKLRRAY 131

Query: 139 SPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGE 198
           SPGVQEYVEAAT CKFC+TGTLL L+E+NAGLLPLSDP++EPLQI+  DYLLGLADLTGE
Sbjct: 132 SPGVQEYVEAATLCKFCKTGTLLSLDEINAGLLPLSDPSLEPLQISNLDYLLGLADLTGE 191

Query: 199 LMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIEN 258
           LMRLAIGRISDGELE+AEKICRF RDIYRELTL+VP MD+ SDMK KMDTMLQS++KIEN
Sbjct: 192 LMRLAIGRISDGELEYAEKICRFVRDIYRELTLLVPHMDDTSDMKMKMDTMLQSLMKIEN 251

Query: 259 ACLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 288
           AC SVHVRGSEY  LLGS+DP SFL GVPD++
Sbjct: 252 ACFSVHVRGSEYMPLLGSNDPGSFLSGVPDIE 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738200|emb|CBI27401.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/266 (76%), Positives = 231/266 (86%), Gaps = 2/266 (0%)

Query: 25  KTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITIN 84
           K HR  Q++ T LQS  KR RT+ TES +KDAFANY  YLN LNEKRERVVK+SRDITIN
Sbjct: 4   KPHRFPQVADTVLQSPPKRARTMATESSIKDAFANYTDYLNLLNEKRERVVKASRDITIN 63

Query: 85  SKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQE 144
           SKKVIFQVHRIS++NK+EVL KA  DL +V +Q++SRLVKELQGTDFWKLRRAYSPGVQE
Sbjct: 64  SKKVIFQVHRISKNNKDEVLDKAVKDLASVTEQHVSRLVKELQGTDFWKLRRAYSPGVQE 123

Query: 145 YVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAI 204
           YVEAAT C FC+ GTLL L+E+NA LLPLSDP+ +PLQIN+ DYLLGLADLTGELMRLAI
Sbjct: 124 YVEAATLCNFCKNGTLLILDEINATLLPLSDPSHQPLQINILDYLLGLADLTGELMRLAI 183

Query: 205 GRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVH 264
           GRISDGELE+AEKIC F RDIYRELTL+ P MD+N+DMKTKMDTMLQSV+KIENAC SVH
Sbjct: 184 GRISDGELEYAEKICGFVRDIYRELTLLAPHMDDNTDMKTKMDTMLQSVMKIENACFSVH 243

Query: 265 VRGSEYTLL-GSSDPSF-LMGVPDMQ 288
           VRGSEY  L GSSDPS+ L+G+PD +
Sbjct: 244 VRGSEYVQLPGSSDPSYLLLGMPDHE 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424991|ref|XP_002266684.1| PREDICTED: translin-associated protein X-like isoform 1 [Vitis vinifera]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/266 (76%), Positives = 231/266 (86%), Gaps = 2/266 (0%)

Query: 25  KTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITIN 84
           K HR  Q++ T LQS  KR RT+ TES +KDAFANY  YLN LNEKRERVVK+SRDITIN
Sbjct: 16  KPHRFPQVADTVLQSPPKRARTMATESSIKDAFANYTDYLNLLNEKRERVVKASRDITIN 75

Query: 85  SKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQE 144
           SKKVIFQVHRIS++NK+EVL KA  DL +V +Q++SRLVKELQGTDFWKLRRAYSPGVQE
Sbjct: 76  SKKVIFQVHRISKNNKDEVLDKAVKDLASVTEQHVSRLVKELQGTDFWKLRRAYSPGVQE 135

Query: 145 YVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAI 204
           YVEAAT C FC+ GTLL L+E+NA LLPLSDP+ +PLQIN+ DYLLGLADLTGELMRLAI
Sbjct: 136 YVEAATLCNFCKNGTLLILDEINATLLPLSDPSHQPLQINILDYLLGLADLTGELMRLAI 195

Query: 205 GRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVH 264
           GRISDGELE+AEKIC F RDIYRELTL+ P MD+N+DMKTKMDTMLQSV+KIENAC SVH
Sbjct: 196 GRISDGELEYAEKICGFVRDIYRELTLLAPHMDDNTDMKTKMDTMLQSVMKIENACFSVH 255

Query: 265 VRGSEYTLL-GSSDPSF-LMGVPDMQ 288
           VRGSEY  L GSSDPS+ L+G+PD +
Sbjct: 256 VRGSEYVQLPGSSDPSYLLLGMPDHE 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108631|ref|XP_002314915.1| predicted protein [Populus trichocarpa] gi|222863955|gb|EEF01086.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/290 (72%), Positives = 242/290 (83%), Gaps = 21/290 (7%)

Query: 20  MASKSKTHRLHQLSGTALQSIAKRPRTITTESY-------MKDAFANYAGYLNELNEKRE 72
           +A+K K H LHQ +   LQS AKR RT+++ S         KDAF NYA YLN+LNEKRE
Sbjct: 17  VANKPKPHLLHQGTAAGLQSSAKRARTMSSTSESSSSSSSFKDAFGNYANYLNKLNEKRE 76

Query: 73  RVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFW 132
           RVVK+SRDIT+NSKKVIFQVHRIS+DN++EVL KAE DL AV +QYI +LVKELQGTDFW
Sbjct: 77  RVVKASRDITMNSKKVIFQVHRISKDNRDEVLDKAEKDLAAVTEQYILKLVKELQGTDFW 136

Query: 133 KLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGL 192
           KLRRAYSPGVQEYVEAATFCKFCRTGTLL+L+E+NA LLPLS+P++EPLQINV DYLLGL
Sbjct: 137 KLRRAYSPGVQEYVEAATFCKFCRTGTLLNLDEINATLLPLSEPSVEPLQINVLDYLLGL 196

Query: 193 ADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQS 252
           ADLTGELMRLAIGRISDGELE+A+KIC+F  DIYRELTL+VP MD++SDMKTKMDTMLQS
Sbjct: 197 ADLTGELMRLAIGRISDGELEYAKKICQFVHDIYRELTLIVPYMDDSSDMKTKMDTMLQS 256

Query: 253 VLKIEN------------ACLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 288
           V+KIEN            AC  VHVRGSEYT LLG+S+P SFL+GV D++
Sbjct: 257 VVKIENGFTASFNRVIVAACYGVHVRGSEYTPLLGASEPSSFLLGVSDVE 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516891|ref|XP_003628734.1| Translin-associated protein X [Medicago truncatula] gi|355522756|gb|AET03210.1| Translin-associated protein X [Medicago truncatula]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/314 (67%), Positives = 251/314 (79%), Gaps = 33/314 (10%)

Query: 7   LRSWISS-SRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTIT--------TESYMKDAF 57
           LRS+ SS  R  + MAS+ KT RLHQ++GT  Q+ +KRP+T++        T+S MK+ F
Sbjct: 2   LRSFSSSFHRLSLFMASE-KTQRLHQITGTNFQNTSKRPKTMSIATDTATVTDSAMKEPF 60

Query: 58  ANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQ 117
             Y  YLN LN+KRERVVK+SRDIT+NSKKVIFQVHR+S+ NK+EVL+KAE DL AV +Q
Sbjct: 61  TKYTEYLNNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQ 120

Query: 118 YISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPA 177
           ++SRLVKELQGTDFWKLRRAYSPG+QEYVEAATFC FC+ GTLL L+E+N  LLPLSDP+
Sbjct: 121 HVSRLVKELQGTDFWKLRRAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTLLPLSDPS 180

Query: 178 IEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMD 237
           ++PLQIN+ DY+LGLADLTGELMRLAIGRISDGELEFAEKIC F+RDIYRELTLVVP MD
Sbjct: 181 LQPLQINILDYILGLADLTGELMRLAIGRISDGELEFAEKICSFARDIYRELTLVVPHMD 240

Query: 238 NNSDMKTKMDTMLQSVLKIEN---------------------ACLSVHVRGSEYT-LLGS 275
           ++SDMKTKM+TMLQSV+KIEN                     AC SVHVRGSEY  LLGS
Sbjct: 241 DSSDMKTKMETMLQSVMKIENEYCLTYILFLHEILIIDVVCVACFSVHVRGSEYIPLLGS 300

Query: 276 SDP-SFLMGVPDMQ 288
           +DP SFL+GVPD++
Sbjct: 301 NDPSSFLVGVPDIE 314

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807852|ref|NP_001242186.1| uncharacterized protein LOC100776523 [Glycine max] gi|255644471|gb|ACU22739.1| unknown [Glycine max]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/285 (70%), Positives = 240/285 (84%), Gaps = 13/285 (4%)

Query: 11  ISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITT-----ESYMKDAFANYAGYLN 65
           + S R  + MASK      H+++GT +QS  KR RT+ T     E  +K+AF+ +   LN
Sbjct: 2   LHSLRFSLFMASK------HRIAGTNIQSSPKRARTMATSSTAIEPALKEAFSRHTQCLN 55

Query: 66  ELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKE 125
           +LN+KRERVVK+SRD+T+NSKKVIFQVHR+S+ NK E+L+KAE DL AV DQY+SRLVKE
Sbjct: 56  DLNDKRERVVKASRDVTMNSKKVIFQVHRMSKYNKVEILEKAEKDLAAVTDQYMSRLVKE 115

Query: 126 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINV 185
           LQGTDFWKLRRAYSPG+QEYVEAATF  FC++GTLL L+E+N  LLPLSDP+++PLQIN+
Sbjct: 116 LQGTDFWKLRRAYSPGIQEYVEAATFYGFCKSGTLLKLDEINKTLLPLSDPSLDPLQINI 175

Query: 186 FDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTK 245
            DY+LG+ADLTGELMRLAIGRISDGELEFAEKICRF+RDIYRELTLVVP MD++SDMKTK
Sbjct: 176 LDYILGVADLTGELMRLAIGRISDGELEFAEKICRFARDIYRELTLVVPHMDDSSDMKTK 235

Query: 246 MDTMLQSVLKIENACLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 288
           MD MLQSV+KIENAC  VHVRGSEY  LLGS+DP SFL+GVPD++
Sbjct: 236 MDVMLQSVMKIENACFGVHVRGSEYIPLLGSNDPSSFLVGVPDIE 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678076|ref|NP_178473.2| translin-like protein [Arabidopsis thaliana] gi|26449445|dbj|BAC41849.1| unknown protein [Arabidopsis thaliana] gi|87116652|gb|ABD19690.1| At2g03780 [Arabidopsis thaliana] gi|330250654|gb|AEC05748.1| translin-like protein [Arabidopsis thaliana]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/273 (69%), Positives = 233/273 (85%), Gaps = 2/273 (0%)

Query: 18  IIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKS 77
           ++MA K K  RLHQ++ + ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK 
Sbjct: 15  MLMAPKLKPQRLHQIAESGVEHLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKV 74

Query: 78  SRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRA 137
           SRDIT+NSKKVIFQVHR+S+DNKEEVL+KA  DLEAV+DQ+ +RL+KELQGTDFWKLRRA
Sbjct: 75  SRDITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRA 134

Query: 138 YSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTG 197
           YSPGVQEYVEAATF KFC +GTL  L+E+N  L+PLSDP++EPLQIN+ DY+LGLADLTG
Sbjct: 135 YSPGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGLADLTG 194

Query: 198 ELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIE 257
           ELMR+AIGRISDGE+EFA++IC+F R I+REL LVVP MD++ DMK+KM+ MLQSV+KIE
Sbjct: 195 ELMRMAIGRISDGEIEFAQRICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIE 254

Query: 258 NACLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 288
           NAC SVHVRG EY  LLG + P S+L+G  D++
Sbjct: 255 NACFSVHVRGLEYIPLLGDNAPTSYLLGAADVE 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818030|ref|XP_002876898.1| translin family protein [Arabidopsis lyrata subsp. lyrata] gi|297322736|gb|EFH53157.1| translin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/268 (70%), Positives = 231/268 (86%), Gaps = 2/268 (0%)

Query: 18  IIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKS 77
           ++MA K K  RLHQ++ T ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK+
Sbjct: 15  MLMAPKLKPQRLHQIAETGVEQLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKA 74

Query: 78  SRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRA 137
           SRDIT+NSKKVIFQVHR+S+DNKEEVL+KA  DLEAV+DQ+ ++L++ELQGTDFWKLRRA
Sbjct: 75  SRDITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFAQLMRELQGTDFWKLRRA 134

Query: 138 YSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTG 197
           YSPGVQEYVEAATF KFC +GTL  L+E+N  L+PLSDP++EPLQIN+ DY+LGLADLTG
Sbjct: 135 YSPGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGLADLTG 194

Query: 198 ELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIE 257
           ELMR+AIGRISDGE+EFA++IC+F R I+REL LVVP MD++ DMK+KM+ MLQSV+KIE
Sbjct: 195 ELMRMAIGRISDGEIEFAQRICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIE 254

Query: 258 NACLSVHVRGSEYT-LLGSSDP-SFLMG 283
           NAC SVHVRGSEY  LLG   P S+L+G
Sbjct: 255 NACFSVHVRGSEYIPLLGDDAPTSYLLG 282

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541928|ref|XP_002512028.1| translin associated factor X, putative [Ricinus communis] gi|223549208|gb|EEF50697.1| translin associated factor X, putative [Ricinus communis]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/253 (77%), Positives = 221/253 (87%), Gaps = 9/253 (3%)

Query: 10  WISSSRSPIIMASKSKTHRLHQ---LSGTALQSIAKRPRTITTESYMKDAFANYAGYLNE 66
           WI      ++MASKSK HR H     +GTALQS  KR RT++TES  KDAF+ YA YLN 
Sbjct: 10  WI------VLMASKSKPHRPHHQEVAAGTALQSSTKRARTMSTESSFKDAFSKYADYLNN 63

Query: 67  LNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKEL 126
           LNEKRERVVK+SRD+T+NSKKVIFQVHR+S+ NKEEVL+KAE DL AV DQ++SRLVKEL
Sbjct: 64  LNEKRERVVKASRDVTMNSKKVIFQVHRLSKYNKEEVLEKAEKDLAAVTDQHMSRLVKEL 123

Query: 127 QGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVF 186
           QGTDFWKLRRAYSPGVQEYVEAATF KFCRTGTLL+L+E+NA LLPLSDP++EPLQ+NV 
Sbjct: 124 QGTDFWKLRRAYSPGVQEYVEAATFFKFCRTGTLLNLDEINATLLPLSDPSLEPLQLNVL 183

Query: 187 DYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKM 246
           DYLLGLADLTGELMRLAIGRISDGE EFAE+IC+F R+IYRELTL+VP MD++SDMKTKM
Sbjct: 184 DYLLGLADLTGELMRLAIGRISDGEPEFAERICKFVREIYRELTLIVPHMDDSSDMKTKM 243

Query: 247 DTMLQSVLKIENA 259
           DTMLQSVLKIEN 
Sbjct: 244 DTMLQSVLKIENG 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2044264	287	AT2G03780 "AT2G03780" [Arabido	0.930	0.937	0.671	1.3e-93
UNIPROTKB|J9P139	290	TSNAX "Uncharacterized protein	0.387	0.386	0.403	6.2e-33
RGD|621574	290	Tsnax "translin-associated fac	0.349	0.348	0.427	7.9e-33
MGI|MGI:1855672	290	Tsnax "translin-associated fac	0.349	0.348	0.436	1e-32
UNIPROTKB|F1RGU1	290	TSNAX "Uncharacterized protein	0.387	0.386	0.403	1.3e-32
UNIPROTKB|Q99598	290	TSNAX "Translin-associated pro	0.387	0.386	0.394	1.6e-32
DICTYBASE|DDB_G0284837	284	tsnax "translin-associated pro	0.761	0.774	0.340	2.3e-32
UNIPROTKB|E1BQ94	260	LOC100859597 "Uncharacterized	0.747	0.830	0.381	3.7e-32
UNIPROTKB|G3MY03	290	TSNAX "Uncharacterized protein	0.387	0.386	0.394	4.3e-32
ZFIN|ZDB-GENE-050913-80	281	tsnax "translin-associated fac	0.747	0.768	0.357	3e-30

TAIR|locus:2044264 AT2G03780 "AT2G03780" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 182/271 (67%), Positives = 221/271 (81%)

Query:    20 MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSR 79
             MA K K  RLHQ++ + ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK SR
Sbjct:    17 MAPKLKPQRLHQIAESGVEHLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKVSR 76

Query:    80 DITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYS 139
             DIT+NSKKVIFQVHR+S+DNKEEVL+KA  DLEAV+DQ+ +RL+KELQGTDFWKLRRAYS
Sbjct:    77 DITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRAYS 136

Query:   140 PGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGEL 199
             PGVQEYVEAATF KFC +GT              SDP++EPLQIN+ DY+LGLADLTGEL
Sbjct:   137 PGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGLADLTGEL 196

Query:   200 MRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 259
             MR+AIGRISDGE+EFA++IC+F R I+REL LVVP MD++ DMK+KM+ MLQSV+KIENA
Sbjct:   197 MRMAIGRISDGEIEFAQRICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIENA 256

Query:   260 CLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 288
             C SVHVRG EY  LLG + P S+L+G  D++
Sbjct:   257 CFSVHVRGLEYIPLLGDNAPTSYLLGAADVE 287

GO:0003677 "DNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|J9P139 TSNAX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 46/114 (40%), Positives = 73/114 (64%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0043565 "sequence-specific DNA binding" evidence=IEA

RGD|621574 Tsnax "translin-associated factor X" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 44/103 (42%), Positives = 69/103 (66%)

Query:    56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
             AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+L ++E+ L+ V
Sbjct:    38 AFKSFQQELDTRHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query:   115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             + + + ++ +EL G D  +  RA + G+QEYVEA +F  F RT
Sbjct:    98 RQKML-QVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIRT 139

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IDA

MGI|MGI:1855672 Tsnax "translin-associated factor X" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 45/103 (43%), Positives = 69/103 (66%)

Query:    56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
             AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+L ++E+ L+ V
Sbjct:    38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query:   115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    98 R-QKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKT 139

GO:0003677 "DNA binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RGU1 TSNAX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 46/114 (40%), Positives = 73/114 (64%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+
Sbjct:    27 KDLNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q99598 TSNAX "Translin-associated protein X" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 45/114 (39%), Positives = 73/114 (64%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDI 86

Query:   104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0008565 "protein transporter activity" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

DICTYBASE|DDB_G0284837 tsnax "translin-associated protein X" [Dictyostelium discoideum (taxid:44689)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 77/226 (34%), Positives = 135/226 (59%)

Query:    46 TITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLK 105
             +I  E  +K  F++++  L+E N++RER+VK+SRDITI SK+VI  + R   ++K+E+LK
Sbjct:    50 SIFNEPKIKSMFSSFSKKLDEDNDRRERIVKNSRDITIASKRVISLLQRAVWEDKQEILK 109

Query:   106 KAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXX 165
             +++ +L+ + + +   ++KEL   ++WK ++A++ GVQEY+EA +F  +   G       
Sbjct:   110 QSKQNLQPIFNLF-GNIIKELDQQEYWKFQKAFTNGVQEYIEAVSFQYYIEFGALIPLDS 168

Query:   166 XXXXXXXXSD-PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
                      +  ++    I++ DY LG+ DL+GELMR + G ++ G+ +   KIC    D
Sbjct:   169 ILIPIKEALNLDSLGQFNISIDDYALGICDLSGELMRYSTGCVTVGKYDECFKIC----D 224

Query:   225 IYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEY 270
               R ++        N D+ +KM+TM +S+ KIE  C S+ +R SE+
Sbjct:   225 FIRSMSSGFKKCHLNKDITSKMNTMEESLKKIEKLCFSIRIRKSEF 270

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|E1BQ94 LOC100859597 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 90/236 (38%), Positives = 132/236 (55%)

Query:    51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHR-ISRDNKEEVLKKAEA 109
             SY+    A +   L+  ++K ER+VK SRDITI SK+ IF +HR IS  N EEVL ++E 
Sbjct:     4 SYLNTNSAAFQLELDTRHDKYERLVKLSRDITIESKRTIFLLHRYISAPNGEEVLNESEV 63

Query:   110 DLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTG----------- 158
              L+AV+ + I ++ +EL G D ++  RA SPG+QEY+EA +F  F +T            
Sbjct:    64 KLDAVRRK-IKQVAQELIGEDMYQFHRAISPGLQEYIEAVSFQYFIKTRSLISIEEINKQ 122

Query:   159 ---TXXXXXXXXXXXXXXSD--PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELE 213
                T               D  P    L++   DYLLG+ADLTGELMRL I  + +G+++
Sbjct:   123 LVFTAEDREETTNMTSTSQDKQPHTWSLKVTPVDYLLGVADLTGELMRLCISSVGNGDID 182

Query:   214 FAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE 269
                ++ +F R IY   T +        ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct:   183 TPFELSQFLRQIYDGFTFIGNT--GPYEVSKKLYTLKQSLAKVENACYTLKVRGSE 236

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G3MY03 TSNAX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 45/114 (39%), Positives = 72/114 (63%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             L ++E  L+ V+ Q I ++ +EL   D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEVKLDGVR-QKILQVAQELSVEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

ZFIN|ZDB-GENE-050913-80 tsnax "translin-associated factor X" [Danio rerio (taxid:7955)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 83/232 (35%), Positives = 129/232 (55%)

Query:    51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEA 109
             S +  AF  +   L+   +K ER+VK SRD+TI SK+ IF +HR+ S  + EE+L +AE 
Sbjct:    29 SVVISAFKVFQQELDTRYDKYERLVKISRDVTIESKRTIFLLHRVASVPDVEEILNEAEV 88

Query:   110 DLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXX 169
              L+ V+ Q I ++ +EL+G D  +  RA++PG+QEYVEA +F  F R  +          
Sbjct:    89 KLDGVR-QKIGQIAEELRGEDLHQFHRAFTPGIQEYVEAVSFHHFIRHRSLISLEEINAR 147

Query:   170 XXXXSD------------PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 217
                  D            P +   QI   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct:   148 LVFIRDNNKAVGEGTFSSPCVLTFQITPTDYLLGVADLTGELMRMCISSVGNGDMDTPFQ 207

Query:   218 ICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE 269
             +  F R I+   +L+        ++  K+  + QS+ K+E+AC ++ VRGSE
Sbjct:   208 LSGFLRQIHDGFSLIGNT--GPYEVSKKLHALRQSLGKVEDACYTLRVRGSE 257

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam01997	187	pfam01997, Translin, Translin family	4e-64
COG2178	204	COG2178, COG2178, Predicted RNA-binding protein of	3e-23
PRK14562	204	PRK14562, PRK14562, haloacid dehalogenase superfam	3e-18

>gnl|CDD|202084 pfam01997, Translin, Translin family

 Score =  199 bits (508), Expect = 4e-64
 Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 14/201 (6%)

Query: 68  NEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQ 127
           ++ RE ++K SRDIT  SKK IF +HR   +  EE+LK+A+  L  +K        + L+
Sbjct: 1   HDAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKEAKELLAKLK--------ELLK 52

Query: 128 GTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFD 187
           G  +++   A+S  +QEYVEA TF  +  TGTL  LEEL   L    +       +   D
Sbjct: 53  GHPYYRYSGAWSNALQEYVEALTFYHYLETGTLPSLEELGEILGVPVNDGF---HVTPED 109

Query: 188 YLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMD 247
           YLLGL DLTGELMR A+  ++ G+ E   +I  F  D+Y    L+      N  ++ K+D
Sbjct: 110 YLLGLFDLTGELMRYALNSVTLGDYERPLEILEFMEDLYAGFRLLNLK---NDGLRKKLD 166

Query: 248 TMLQSVLKIENACLSVHVRGS 268
            +  S+ K+E     + VRG 
Sbjct: 167 VLRYSLEKVEEVVYDLSVRGL 187

Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes human translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen. Length = 187

>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 23/177 (12%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLE 112
           +++   +    L E ++ RE  +K SR+I   S + IF +HR   +  E+ LKKA   +E
Sbjct: 1   LREEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVE 60

Query: 113 AVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLP 172
            +K        + L G          +  +QEYVEA       + G L            
Sbjct: 61  KLK--------RLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL------------ 100

Query: 173 LSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYREL 229
              P+ E L +    Y+LGLAD  GEL R  +  +  G  E AE+  +F   +Y EL
Sbjct: 101 ---PSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEEL 154

Length = 204

>gnl|CDD|184746 PRK14562, PRK14562, haloacid dehalogenase superfamily protein; Provisional

 Score = 80.7 bits (200), Expect = 3e-18
 Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 23/167 (13%)

Query: 63  YLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRL 122
            L E +E RE  +K SR+I   S   I  +HR   +  E++LK+AE  ++ +K+  + + 
Sbjct: 12  ELEEKDEAREEALKLSREIVRLSGDAIRAIHRGDFEEAEKLLKEAEELVKELKE--LLKD 69

Query: 123 VKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQ 182
             EL    +       +  +QEYVEA           +   EEL                
Sbjct: 70  HPELYYAGY-----VGTA-LQEYVEALLVYSLLFENKIPSPEELG--------------- 108

Query: 183 INVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYREL 229
           +    YLLGLAD  GEL R  +  +  GE+E AEK+     +IY  L
Sbjct: 109 VPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEIYEFL 155

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG3066	271	consensus Translin-associated protein X [General f	100.0
PF01997	200	Translin: Translin family; InterPro: IPR002848 Tra	100.0
PRK14562	204	haloacid dehalogenase superfamily protein; Provisi	100.0
KOG3067	226	consensus Translin family protein [General functio	100.0
COG2178	204	Predicted RNA-binding protein of the translin fami	100.0

>KOG3066 consensus Translin-associated protein X [General function prediction only]

Probab=100.00  E-value=8.1e-63  Score=435.38  Aligned_cols=245  Identities=40%  Similarity=0.560  Sum_probs=228.6

Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHHHHHHH
Q 022963           42 KRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR-DNKEEVLKKAEADLEAVKDQYIS  120 (289)
Q Consensus        42 ~~~~~~~~~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~-~~~~~~l~~A~~~l~~v~~~~l~  120 (289)
                      ..++||++.+++...|.+|+++|++.||+||||+|+|||||..||++||+|||..+ .+.++++.++...++.++.+.+.
T Consensus        24 qkartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~~e~~l~~~~~~le~vr~k~f~  103 (271)
T KOG3066|consen   24 QKARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGFPEPKLFDRTSILEKVRHKEFE  103 (271)
T ss_pred             ccccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCCcchhhhhhhhHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999987 66788999999999999999999


Q ss_pred             HHHHhhcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHH
Q 022963          121 RLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELM  200 (289)
Q Consensus       121 ~La~~l~~~~~~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELm  200 (289)
                      .++.+|+|.++|+|++++++|+||||||++|++||.+|+|.+.+|++..+.++..|  .++.|++-||++|+||||||||
T Consensus       104 ~l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~~--~rl~in~iDYvLGvaDlTGElM  181 (271)
T KOG3066|consen  104 SLKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDSS--FRLSINFIDYVLGVADLTGELM  181 (271)
T ss_pred             HHHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCCc--cceeeeHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999887655  5789999999999999999999


Q ss_pred             HHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhheeeeccccc-CCCCCCc-
Q 022963          201 RLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYT-LLGSSDP-  278 (289)
Q Consensus       201 R~ain~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Ydl~vRg~e~~-~~~~~~~-  278 (289)
                      |+|||++++|+++.|.++|+|+|.||.+++.+.+.....+++.+|+.+|+|||-|||++||.++|||+|+| ..++++| 
T Consensus       182 Rm~I~~~s~g~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~KvEnaCys~~vRg~e~~~l~l~~~~~  261 (271)
T KOG3066|consen  182 RMLITNGSKGSIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISKVENACYSKIVRGAEKRYLNLEVDTA  261 (271)
T ss_pred             HHHHhcCcCcchhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHHHHhHHHHHHhccccccccccccccc
Confidence            99999999999999999999999999999999765433689999999999999999999999999999977 5568888 


Q ss_pred             ccccCCCCCC
Q 022963          279 SFLMGVPDMQ  288 (289)
Q Consensus       279 ~~~~~~~~~~  288 (289)
                      ..+.++.|+|
T Consensus       262 ~~~~e~~d~e  271 (271)
T KOG3066|consen  262 TPPEEKRDRE  271 (271)
T ss_pred             CCchhhhhcC
Confidence            7777777664

>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments

Probab=100.00  E-value=1.5e-59  Score=417.47  Aligned_cols=198  Identities=42%  Similarity=0.682  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhcchhHHHHHH
Q 022963           68 NEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVE  147 (289)
Q Consensus        68 ~d~REriik~SRdIt~~SKkiIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~l~~La~~l~~~~~~ry~~~~s~~lQEyVE  147 (289)
                      ||+||+|+|+|||||++||++||+|||++.+++.+++++|++.++++++ .++.|+ ++++.++|+|++.|++|+|||||
T Consensus         1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~-~~~~l~-~~~~~~~~~y~~~~s~~lQE~vE   78 (200)
T PF01997_consen    1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKK-LLKQLA-ELPGHPFYRYHGAYSPGLQEYVE   78 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHC-HSHHHH-HCTTCGHHHHGGGTHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-HHhhhc-ccCCCcHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999987788999999999999985 789999 99999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHH
Q 022963          148 AATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYR  227 (289)
Q Consensus       148 A~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~e~~~~i~~fm~~Iy~  227 (289)
                      |++|++||++|+|+|++|+++.|..... ....|+|+++|||+||+||||||||+|||+++.||++.|.++++||++||.
T Consensus        79 a~~f~~~l~~~~L~t~~ev~~~l~~~~~-~~~~~~v~~~dYL~Gl~DltGEL~R~ai~~v~~gd~~~~~~i~~f~~~l~~  157 (200)
T PF01997_consen   79 AISFYHYLETGRLLTPEEVGEILGFSED-DEDRFHVTPEDYLLGLADLTGELMRYAINSVTKGDYERPEKILEFMRELYS  157 (200)
T ss_dssp             HHHHHHHHHHSSS--HHHHHHHCTCBSS-TSCSSB--HHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHhhccc-cccceecCHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Confidence            9999999999999999999987754433 366799999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCC--CCCcchhhHHHHHHHHHHHHhhhhheeeecc
Q 022963          228 ELTLVVPLMD--NNSDMKTKMDTMLQSVLKIENACLSVHVRGS  268 (289)
Q Consensus       228 ~f~~L~~~lk--~n~~LRkK~D~lk~slkKvE~v~Ydl~vRg~  268 (289)
                      +|..|.++..  .|++||||+|++||+|+|+|++||+++|||+
T Consensus       158 ~~~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~~y~l~vRgs  200 (200)
T PF01997_consen  158 GFQLLNLPDAIVKNDELRKKFDVLKYSLKKVEEVVYDLSVRGS  200 (200)
T ss_dssp             HHHTSGGTTGS--SHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCcchhhcccchhHHHHHHHHHHHHHHHHHHhHhhhhcCC
Confidence            9999954321  2899999999999999999999999999996

They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.

>PRK14562 haloacid dehalogenase superfamily protein; Provisional

Probab=100.00  E-value=2.3e-52  Score=372.89  Aligned_cols=194  Identities=27%  Similarity=0.299  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 022963           53 MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFW  132 (289)
Q Consensus        53 ~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~l~~La~~l~~~~~~  132 (289)
                      +.++|++++++||++||+||+|+|+|||||+.||++||.+||.+..++.+.+++|.+.        +.+|++.+++.++|
T Consensus         2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~~~~a~~~l~~a~~~--------~~~l~~~~~~~~~~   73 (204)
T PRK14562          2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGDFEEAEKLLKEAEEL--------VKELKELLKDHPEL   73 (204)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--------HHHHHHHhccCchh
Confidence            4678999999999999999999999999999999999999998644444444444443        55666788888899


Q ss_pred             hhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCch
Q 022963          133 KLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGEL  212 (289)
Q Consensus       133 ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~  212 (289)
                      +|++.|++|+||||||++|++|+++|+|+|++|               ++|+++|||+||+|+||||||+|+|+++.||+
T Consensus        74 ~y~~~~~~~lQEyvEA~~f~~~l~~~~l~s~ee---------------l~v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~  138 (204)
T PRK14562         74 YYAGYVGTALQEYVEALLVYSLLFENKIPSPEE---------------LGVPEAAYLLGLADAIGELRRHILELLRKGEI  138 (204)
T ss_pred             hhhhhcchHHHHHHHHHHHHHHHcCCCCCCHHH---------------cCCCHHHHHhHHHHHHhHHHHHHHHHHhcCCh
Confidence            999999999999999999999999999999998               46999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHH-Hhhhhheeeeccc
Q 022963          213 EFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKI-ENACLSVHVRGSE  269 (289)
Q Consensus       213 e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKv-E~v~Ydl~vRg~e  269 (289)
                      +.|+++++||++||.+|+.|.++.+..++||||+|++||+|+|+ ++++|....++++
T Consensus       139 ~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~lekt~~d~~~~~~~~~l~  196 (204)
T PRK14562        139 EEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDVARSLLERTRGDLTNAILNRKLE  196 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999443222359999999999999999 6678877766654

>KOG3067 consensus Translin family protein [General function prediction only]

Probab=100.00  E-value=1.5e-45  Score=319.52  Aligned_cols=211  Identities=20%  Similarity=0.344  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 022963           54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD--NKEEVLKKAEADLEAVKDQYISRLVKELQGTDF  131 (289)
Q Consensus        54 ~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~--~~~~~l~~A~~~l~~v~~~~l~~La~~l~~~~~  131 (289)
                      +++|.++++.+|+.++.||+|.+.+++|+..+|.+...|+-++.+  ..++.|..|++++.++.. ++..|++..+..+|
T Consensus         5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq-~~~~LaE~~~~~qy   83 (226)
T KOG3067|consen    5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQ-KYRMLAELPPAGQY   83 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH-HHHHHhhcCCccce
Confidence            589999999999999999999999999999999999888777653  368899999999999876 78999999999999


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCc
Q 022963          132 WKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGE  211 (289)
Q Consensus       132 ~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain~v~~Gd  211 (289)
                      |||++.|...+|..|.-..|.+||++|.|+|.+++.++| +++....++||++.+|||.|++-|.+||.|+++|+|+.||
T Consensus        84 yry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~eil-gl~p~~s~~FhLdvedyl~gvl~L~seLsR~svNsVtaGd  162 (226)
T KOG3067|consen   84 YRYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTEIL-GLEPDRSEGFHLDVEDYLSGVLFLASELSRQSVNSVTAGD  162 (226)
T ss_pred             EEecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHh-cCCccccccceeeHHHHHHHHHHHHHHHHHhhhccccccC
Confidence            999999999999999999999999999999999998766 5665666789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhheeeeccc
Q 022963          212 LEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE  269 (289)
Q Consensus       212 ~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Ydl~vRg~e  269 (289)
                      |++|..+..|+.+++.+|++|  |+| ||+||||+|+|||+|||+|+|+||++|||+.
T Consensus       163 Y~~Pl~v~~fi~dlhs~FrlL--nLK-ndsLRK~fDgLkYDlkrvEeVvYDv~Irgl~  217 (226)
T KOG3067|consen  163 YHRPLHVSNFINDLHSGFRLL--NLK-NDSLRKRFDGLKYDLKRVEEVVYDVSIRGLV  217 (226)
T ss_pred             cCCchHHHHHHhhhcccceee--ecc-chhhhccccchhhhHHhhhhhheeeeeeccc
Confidence            999999999999999999999  999 9999999999999999999999999999986

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-38  Score=278.99  Aligned_cols=183  Identities=31%  Similarity=0.407  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 022963           54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWK  133 (289)
Q Consensus        54 ~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~l~~La~~l~~~~~~r  133 (289)
                      ...+.++++.|+++++.||+++++||+|+++|+.+||++||++.+.+..-+++|.+.+.+        |...+.+  |+.
T Consensus         2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~--------Lk~~l~~--~pe   71 (204)
T COG2178           2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEK--------LKRLLAG--FPE   71 (204)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--------HHHHHhh--hHH
Confidence            357899999999999999999999999999999999999999865555555555555544        3334543  444


Q ss_pred             hh--hhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCc
Q 022963          134 LR--RAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGE  211 (289)
Q Consensus       134 y~--~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain~v~~Gd  211 (289)
                      ++  +..+.|+||||||.+|+.|++++.+++++|+               +|++.+||+|+||++|||||++++.+..|+
T Consensus        72 l~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL---------------~V~~~~YilGl~D~vGELrR~~le~l~~~~  136 (204)
T COG2178          72 LYFAGFVTTALQEYVEATLLYSILKDGRLPSPEEL---------------GVPPIAYILGLADAVGELRRHVLELLRKGS  136 (204)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHc---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44  4668899999999999999999999999984               699999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhh
Q 022963          212 LEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACL  261 (289)
Q Consensus       212 ~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Y  261 (289)
                      ++.|++.++||++||..++.|.++-+..++||||+|++|+.+.|...-+.
T Consensus       137 ~~~Ae~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~dl~  186 (204)
T COG2178         137 FEEAERFLKFMEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKSDLF  186 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999965555567999999999999999876443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
3pja_J	290	Crystal Structure Of Human C3po Complex Length = 29		2e-30
3axj_B	298	High Resolution Crystal Structure Of C3po Length =		4e-23
3riu_C	269	Crystal Structure Of Drosophila Hexameric C3po Form		1e-22
3axj_A	249	High Resolution Crystal Structure Of C3po Length =		3e-06
2qrx_A	235	Crystal Structure Of Drosophila Melanogaster Transl		3e-06
2qva_A	247	Crystal Structure Of Drosophila Melanogaster Transl		3e-06
4dg7_A	255	Low Resolution Structure Of Drosophila Translin Len		3e-06
3riu_A	218	Crystal Structure Of Drosophila Hexameric C3po Form		4e-06

>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex Length = 290

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 133/235 (56%), Gaps = 27/235 (11%)
Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97
Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXS 174
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +              +
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156
Query: 175 D--------PAIEP---------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 217
           +        P+ +          L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216
Query: 218 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 269
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po Length = 298

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 129/282 (45%), Gaps = 40/282 (14%)
Query: 33  SGTALQSIAKRPRTITTESYMKDA--FANYAGYLNEL---NEKRERVVKSSRDITINSKK 87
            G   ++ A R R I      +D+     +  Y NEL   +++ ER+VK SRDITI SK+
Sbjct: 5   GGAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKR 64
Query: 88  VIFQVHRIS--RDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEY 145
           +IF +H I   + NKE+VL++A   L  +       +  EL+  D ++ R +YSPG+QE+
Sbjct: 65  IIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEF 124
Query: 146 VEAATFCKF-CR-----------TGTXXXXXXXXXXXXXXSDPAIEPLQ----------- 182
           ++A T+ ++ C                             S P  EP +           
Sbjct: 125 IQAYTYXEYLCHEDAEGENETKSVSDWQAIQAVXQYVEESSQPKEEPTEGEDVQAIAQVE 184
Query: 183 --------INVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVP 234
                   ++  +Y+LGL+DLTGEL R  I  +  G+ +     C+  +  Y     +  
Sbjct: 185 SPKKFQFFVDPTEYILGLSDLTGELXRRCINSLGSGDTDTCLDTCKALQHFYS--GYISL 242
Query: 235 LMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSS 276
                 ++  K+ T  QSVLK EN C +V VRG E    G++
Sbjct: 243 NCQRARELWRKITTXKQSVLKAENVCYNVKVRGGEAAKWGAT 284

>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 269

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 118/250 (47%), Gaps = 38/250 (15%)
Query: 63  YLNEL---NEKRERVVKSSRDITINSKKVIFQVHRIS--RDNKEEVLKKAEADLEAVKDQ 117
           Y NEL   +++ ER+VK SRDITI SK++IF +H I   + NKE+VL++A   L  +   
Sbjct: 8   YSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAV 67
Query: 118 YISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKF-CR-----------TGTXXXXXX 165
               +  EL+  D ++ R +YSPG+QE++EA T+ ++ C                     
Sbjct: 68  NFRAVALELRDQDVYQFRSSYSPGLQEFIEAYTYXEYLCHEDAEGENETKSVSDWQAIQA 127
Query: 166 XXXXXXXXSDPAIEPLQ-------------------INVFDYLLGLADLTGELMRLAIGR 206
                   S P  EP +                   ++  +Y+LGL+DLTGEL R  I  
Sbjct: 128 VXQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLSDLTGELXRRCINS 187
Query: 207 ISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVR 266
           +  G+ +     C+  +  Y     +        ++  K+ T  QSVLK EN C +V VR
Sbjct: 188 LGSGDTDTCLDTCKALQHFYS--GYISLNCQRARELWRKITTXKQSVLKAENVCYNVKVR 245
Query: 267 GSEYTLLGSS 276
           G E    G++
Sbjct: 246 GGEAAKWGAT 255

>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po Length = 249

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 55  DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEV----LKKAEAD 110
           D F+NY  Y++   E RE +    R+I   SK+   ++  I  D  +      L + + +
Sbjct: 22  DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 81
Query: 111 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 164
           L A K Q ++ LV   Q    +D W     R  +   +  Y+EA          T     
Sbjct: 82  LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 135
Query: 165 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
                    S    E   ++V DYLLG+  L  EL R A   ++ G+ E    I  F  D
Sbjct: 136 EXLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTXGDYERPLNISHFIGD 191
Query: 225 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
           +   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 192 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 231

>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 55  DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEV----LKKAEAD 110
           D F+NY  Y++   E RE +    R+I   SK+   ++  I  D  +      L + + +
Sbjct: 8   DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 67
Query: 111 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 164
           L A K Q ++ LV   Q    +D W     R  +   +  Y+EA          T     
Sbjct: 68  LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 121
Query: 165 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
                    S    E   ++V DYLLG+  L  EL R A   ++ G+ E +  I  F  D
Sbjct: 122 EMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERSLNISHFIGD 177
Query: 225 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
           +   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 178 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 217

>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 247

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 55  DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEV----LKKAEAD 110
           D F+NY  Y++   E RE +    R+I   SK+   ++  I  D  +      L + + +
Sbjct: 20  DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 79
Query: 111 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 164
           L A K Q ++ LV   Q    +D W     R  +   +  Y+EA          T     
Sbjct: 80  LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 133
Query: 165 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
                    S    E   ++V DYLLG+  L  EL R A   ++ G+ E +  I  F  D
Sbjct: 134 EMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERSLNISHFIGD 189
Query: 225 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
           +   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 190 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 229

>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin Length = 255

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 30/238 (12%)
Query: 44  PRTITTESYMK-DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEE 102
           PR     +++  D F+NY  Y++   E RE +    R+I   SK+   ++  I  D  + 
Sbjct: 16  PRGSHMSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQI 75
Query: 103 V----LKKAEADLEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFC 152
                L + + +L A K Q ++ LV   Q    +D W     R  +   +  Y+EA    
Sbjct: 76  SAACGLARKQVELCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV 135
Query: 153 KFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGEL 212
                 T              S    E   ++V DYLLG+  L  EL R A   ++ G+ 
Sbjct: 136 ------TRETVAEMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDY 185
Query: 213 EFAEKICRFSRDI---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
           E    I  F  D+   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 186 ERPLNISHFIGDLNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 237

>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 218

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 55  DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEV----LKKAEAD 110
           D F+NY  Y++   E RE +    R+I   SK+   ++  I  D  +      L + + +
Sbjct: 9   DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 68
Query: 111 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 164
           L A K Q ++ LV   Q    +D W     R  +   +  Y+EA          T     
Sbjct: 69  LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 122
Query: 165 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 224
                    S    E   ++V DYLLG+  L  EL R A   ++ G+ E    I  F  D
Sbjct: 123 EXLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTXGDYERPLNISHFIGD 178
Query: 225 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
           +   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 179 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
3qb5_K	290	Translin-associated protein X; alpha helical bundl	4e-64
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	3e-60
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	1e-59
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	2e-59
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Length = 290

 Score =  202 bits (514), Expect = 4e-64
 Identities = 85/257 (33%), Positives = 146/257 (56%), Gaps = 21/257 (8%)

Query: 41  AKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDN 99
            +  + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  +
Sbjct: 23  RREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPD 82

Query: 100 KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGT 159
            E++L ++E  L+ V+ +   ++ +EL G D  +  RA + G+QEYVEA +F  F +T +
Sbjct: 83  MEDILTESEIKLDGVRQKI-FQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRS 141

Query: 160 LLDLEELNAGLL------------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRL 202
           L+ ++E+N  L+            P SD   +      L++   DYLLG+ADLTGELMR+
Sbjct: 142 LISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRM 201

Query: 203 AIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLS 262
            I  + +G+++   ++ +F R +Y   + +        ++  K+ T+ QS+ K+ENAC +
Sbjct: 202 CINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNT--GPYEVSKKLYTLKQSLAKVENACYA 259

Query: 263 VHVRGSEYTLLGSSDPS 279
           + VRGSE      +D  
Sbjct: 260 LKVRGSEIPKHMLADVF 276

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Length = 298

 Score =  192 bits (488), Expect = 3e-60
 Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 35/269 (13%)

Query: 42  KRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI--SRDN 99
                +  +S +   F  Y+  L   +++ ER+VK SRDITI SK++IF +H I   + N
Sbjct: 19  IPAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQN 78

Query: 100 KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGT 159
           KE+VL++A   L  +       +  EL+  D ++ R +YSPG+QE+++A T+ ++     
Sbjct: 79  KEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHED 138

Query: 160 LLDLEELN-------------------------------AGLLPLSDPAIEPLQINVFDY 188
                E                                   +  +  P      ++  +Y
Sbjct: 139 AEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEY 198

Query: 189 LLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDT 248
           +LGL+DLTGELMR  I  +  G+ +     C+  +  Y     +        ++  K+ T
Sbjct: 199 ILGLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSG--YISLNCQRARELWRKITT 256

Query: 249 MLQSVLKIENACLSVHVRGSEYTLLGSSD 277
           M QSVLK EN C +V VRG E    G++ 
Sbjct: 257 MKQSVLKAENVCYNVKVRGGEAAKWGATF 285

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Length = 240

 Score =  189 bits (480), Expect = 1e-59
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI----SRDNKEEVLKKAE 108
           + + F    G+L    + RE + K  + +   +++++  +  +       +  +   KA 
Sbjct: 15  VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 74

Query: 109 ADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNA 168
                VK   ++ L  +     +++    +   +Q  V  A F  +  T TL+  E +  
Sbjct: 75  EHFGTVKTH-LTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 133

Query: 169 GLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRE 228
            +L +     +   ++V DYL G+  L  EL RL++  ++ G+      I  F  ++   
Sbjct: 134 -ILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 192

Query: 229 LTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYT 271
             L+      N  ++ + D +   V K+E     + +RG    
Sbjct: 193 FRLLNL---KNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKE 232

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Length = 249

 Score =  189 bits (480), Expect = 2e-59
 Identities = 52/235 (22%), Positives = 89/235 (37%), Gaps = 9/235 (3%)

Query: 41  AKRPRTITTESYM--KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD 98
                +    S     D F+NY  Y++   E RE +    R+I   SK+   ++  I  D
Sbjct: 6   HHHHHSQDPMSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSD 65

Query: 99  NK--EEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR 156
                     A   +E    +Y  +L + +    +++    ++   Q  +       +  
Sbjct: 66  LSQISAACGLARKQVELCAQKY-QKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLE 124

Query: 157 TGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAE 216
            G L+  E +   +L L     E   ++V DYLLG+  L  EL R A   ++ G+ E   
Sbjct: 125 AGFLVTRETVAE-MLGLKISQSEGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERPL 183

Query: 217 KICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYT 271
            I  F  D+     L+      N  ++ + D +   V KIE     V +RG    
Sbjct: 184 NISHFIGDLNTGFRLLNL---KNDGLRKRFDALKYDVKKIEEVVYDVSIRGLSSK 235

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 51/310 (16%), Positives = 97/310 (31%), Gaps = 88/310 (28%)

Query: 7   LRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFA-NYAGYL- 64
            +S +S      I+ SK       +L  T L    K+   +  + ++++    NY  +L 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS---KQEEMV--QKFVEEVLRINY-KFLM 95

Query: 65  ----NELNEK--RERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKD-Q 117
                E  +     R+    RD   N  +V F  + +SR      L++A   L  ++  +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQA---LLELRPAK 151

Query: 118 YI----------SRLVKE-LQGTD---------FW-KLRRAYSPGVQEYVEAATFCKFCR 156
            +          + +  +               FW  L+   SP                
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE--------------- 196

Query: 157 TGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGR---------- 206
                 LE L   LL   DP       +  +  L +  +  EL RL   +          
Sbjct: 197 ----TVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 207 -ISDGEL--EFAEKICRF---SRDIYRELTLVV-------PLMDNNSDMKTKMDT--MLQ 251
            + + +    F    C+    +R   +++T  +         +D++S   T  +   +L 
Sbjct: 252 NVQNAKAWNAFNLS-CKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 252 SVLKIENACL 261
             L      L
Sbjct: 309 KYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
3qb5_K	290	Translin-associated protein X; alpha helical bundl	100.0
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	100.0
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	100.0
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	100.0

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J

Probab=100.00  E-value=8.9e-68  Score=492.92  Aligned_cols=230  Identities=36%  Similarity=0.615  Sum_probs=205.8

Q ss_pred             CCCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHHH
Q 022963           44 PRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD-NKEEVLKKAEADLEAVKDQYISRL  122 (289)
Q Consensus        44 ~~~~~~~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~-~~~~~l~~A~~~l~~v~~~~l~~L  122 (289)
                      +..+++++++.++|++|+++||++||+||+|+|+|||||++||++||+|||++.. +.++++++|++.|.++++ ++++|
T Consensus        26 ~~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~-~~~~L  104 (290)
T 3qb5_K           26 GKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQ-KIFQV  104 (290)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             ccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HHHHH
Confidence            3457788999999999999999999999999999999999999999999999864 478999999999999976 79999


Q ss_pred             HHhhcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCC-----------------CcccCh
Q 022963          123 VKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIE-----------------PLQINV  185 (289)
Q Consensus       123 a~~l~~~~~~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~-----------------~l~V~~  185 (289)
                      ++++++.+||+|+++|++|+||||||++|+|||++++|+|++|+++.|......+..                 .|+|++
T Consensus       105 a~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  184 (290)
T 3qb5_K          105 AQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTP  184 (290)
T ss_dssp             HHHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC--------------------CEECCCCH
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccccccccccccccccccceecCCH
Confidence            999999999999999999999999999999999999999999999877533222111                 389999


Q ss_pred             hhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC-cchhhHHHHHHHHHHHHhhhhhee
Q 022963          186 FDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS-DMKTKMDTMLQSVLKIENACLSVH  264 (289)
Q Consensus       186 ~DYLlGL~DLtGELmR~ain~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~-~LRkK~D~lk~slkKvE~v~Ydl~  264 (289)
                      +|||+||+||||||||+|||+|+.||+++|++||+||++||++|++|  +++ |+ +||||+|+|||||+|||++|||++
T Consensus       185 eDYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--~~~-~~~~LrKK~d~lk~svkKvE~v~Ydl~  261 (290)
T 3qb5_K          185 VDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFI--GNT-GPYEVSKKLYTLKQSLAKVENACYALK  261 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH--GGG-SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc--CCC-CChhhhHHHHHHHHHHHHHHHHhhhee
Confidence            99999999999999999999999999999999999999999999999  555 55 999999999999999999999999


Q ss_pred             eecccccCCCCCC
Q 022963          265 VRGSEYTLLGSSD  277 (289)
Q Consensus       265 vRg~e~~~~~~~~  277 (289)
                      |||+|+|++...|
T Consensus       262 vRg~e~pk~~~~d  274 (290)
T 3qb5_K          262 VRGSEIPKHMLAD  274 (290)
T ss_dssp             HHTTCCCCCCC--
T ss_pred             eecCCCCcccchh
Confidence            9999999876443

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C

Probab=100.00  E-value=2.4e-66  Score=484.86  Aligned_cols=230  Identities=33%  Similarity=0.544  Sum_probs=211.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CChHHHHHHHHHHHHHHHHHHHHHH
Q 022963           45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR--DNKEEVLKKAEADLEAVKDQYISRL  122 (289)
Q Consensus        45 ~~~~~~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~--~~~~~~l~~A~~~l~~v~~~~l~~L  122 (289)
                      .++++++++.++|++|+++||++||+||+|+|+|||||+.||++||+|||++.  .+.+++|++|++.+.++++++++.|
T Consensus        22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~l  101 (298)
T 3axj_B           22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAV  101 (298)
T ss_dssp             -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36888999999999999999999999999999999999999999999999987  6688999999999999998788999


Q ss_pred             HHhhcCCChhhhhhhcchhHHHHHHHHHHHHHHh---c------CCCCCHHHHhhccCCCCC------------------
Q 022963          123 VKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR---T------GTLLDLEELNAGLLPLSD------------------  175 (289)
Q Consensus       123 a~~l~~~~~~ry~~~~s~~lQEyVEA~sf~~~L~---~------~~Llt~eev~~~l~~l~~------------------  175 (289)
                      ++++++.+||+|+++|++|+||||||++|++||+   +      |+|+|++|+++.|.....                  
T Consensus       102 a~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L~~~~~~~~~~~~~~~~~~~~~d~  181 (298)
T 3axj_B          102 ALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGEDVQAIA  181 (298)
T ss_dssp             HHHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHCEEECCCC----------------
T ss_pred             HHHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHhccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999   8      999999999987752111                  


Q ss_pred             ----CCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHH
Q 022963          176 ----PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQ  251 (289)
Q Consensus       176 ----~~~~~l~V~~~DYLlGL~DLtGELmR~ain~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~  251 (289)
                          +....|+|+++|||+||+||||||||+|||+|+.||++.|++||.||++||.+|++|  +++.+++||||+|+|||
T Consensus       182 ~~~~~~~~~f~v~~edYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--nlkn~~~LRKK~D~lk~  259 (298)
T 3axj_B          182 QVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGYISL--NCQRARELWRKITTMKQ  259 (298)
T ss_dssp             ----CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTC--CCTTCHHHHHHHHHHHH
T ss_pred             ccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence                111268999999999999999999999999999999999999999999999999999  67723899999999999


Q ss_pred             HHHHHHhhhhheeeecccccCCCCC
Q 022963          252 SVLKIENACLSVHVRGSEYTLLGSS  276 (289)
Q Consensus       252 slkKvE~v~Ydl~vRg~e~~~~~~~  276 (289)
                      ||+|||++|||++|||+|+|.|+++
T Consensus       260 svkKvE~v~Ydl~vRg~e~~~~~~~  284 (298)
T 3axj_B          260 SVLKAENVCYNVKVRGGEAAKWGAT  284 (298)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHTC--
T ss_pred             HHHHHHHHHHHheecCCCccccccc
Confidence            9999999999999999999998864

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A

Probab=100.00  E-value=7.8e-65  Score=464.04  Aligned_cols=224  Identities=22%  Similarity=0.326  Sum_probs=203.7

Q ss_pred             CchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022963           50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD--NKEEVLKKAEADLEAVKDQYISRLVKELQ  127 (289)
Q Consensus        50 ~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~--~~~~~l~~A~~~l~~v~~~~l~~La~~l~  127 (289)
                      ++++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||++..  +.++++++|++.++++++ .+++|+++++
T Consensus        17 ~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l~   95 (249)
T 3axj_A           17 NFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELVP   95 (249)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            4788999999999999999999999999999999999999999999853  367899999999999987 6899999999


Q ss_pred             CCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhh
Q 022963          128 GTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRI  207 (289)
Q Consensus       128 ~~~~~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain~v  207 (289)
                      +.++|+|++.|++|+||||||++|++||++|+|+|++|+++.|. ++.....+|+|+++|||+||+||||||||||||+|
T Consensus        96 ~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~-~~~~~~~~f~v~~edYLlGL~DLtGEL~R~ain~v  174 (249)
T 3axj_A           96 AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLG-LKISQSEGFHLDVEDYLLGILQLASELSRFATNSV  174 (249)
T ss_dssp             TTCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT-CBSSTTTSSBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhc-cccCCCcccccCHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998774 33334557999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhheeeecccccCCCCCCcc
Q 022963          208 SDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPS  279 (289)
Q Consensus       208 ~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Ydl~vRg~e~~~~~~~~~~  279 (289)
                      +.||++.|++|++||++||.+|+.|  +++ |++||||+|++||+|+|||++|||++|||+ .|..++++|.
T Consensus       175 ~~Gd~~~~~~i~~fm~~Ly~~f~~L--n~~-n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~-~~~~~~~~~~  242 (249)
T 3axj_A          175 TMGDYERPLNISHFIGDLNTGFRLL--NLK-NDGLRKRFDALKYDVKKIEEVVYDVSIRGL-SSKEKDQQEE  242 (249)
T ss_dssp             HTTCCSHHHHHHHHHHHHHHHHHHT--CCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCC-------
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhc--CCC-CccHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCccccCCC
Confidence            9999999999999999999999999  666 899999999999999999999999999999 7888888873

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A

Probab=100.00  E-value=1.6e-64  Score=459.76  Aligned_cols=215  Identities=19%  Similarity=0.351  Sum_probs=202.0

Q ss_pred             CchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022963           50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR----DNKEEVLKKAEADLEAVKDQYISRLVKE  125 (289)
Q Consensus        50 ~~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~----~~~~~~l~~A~~~l~~v~~~~l~~La~~  125 (289)
                      ++++.++|+.|+++||++||+||+|+|+|||||+.||++||+|||++.    .+.++++++|++.++++++ .+++|+++
T Consensus        12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~   90 (240)
T 1j1j_A           12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK   90 (240)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            578999999999999999999999999999999999999999999972    3478899999999999887 68999999


Q ss_pred             hcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhh
Q 022963          126 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIG  205 (289)
Q Consensus       126 l~~~~~~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain  205 (289)
                      +++.++|+|++.|++++||||||++|++||++|+|+|++|+++.| ++..+...+|+|+++|||+||+||||||||+|||
T Consensus        91 l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L-~~~~~~~~~f~v~~edYLlGL~DltGEL~R~avn  169 (240)
T 1j1j_A           91 FPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEIL-GIEPDREKGFHLDVEDYLSGVLILASELSRLSVN  169 (240)
T ss_dssp             SCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH-TCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh-CCCccccccCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999877 4555566689999999999999999999999999


Q ss_pred             hhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhheeeeccc
Q 022963          206 RISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE  269 (289)
Q Consensus       206 ~v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Ydl~vRg~e  269 (289)
                      +|+.||++.|++|++||++||.+|++|  |++ |++||||+|++||+|+|||++|||++|||++
T Consensus       170 ~v~~Gd~~~~~~i~~fm~~Ly~~f~~L--nl~-n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~  230 (240)
T 1j1j_A          170 SVTAGDYSRPLHISTFINELDSGFRLL--NLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGFN  230 (240)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHTTC--CCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHhcCChHhHHHHHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHHHHHHHHHHHHheecCCC
Confidence            999999999999999999999999999  666 8999999999999999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1j1ja_	217	a.118.16.1 (A:) Translin {Human (Homo sapiens) [Ta	1e-58

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  184 bits (469), Expect = 1e-58
 Identities = 42/219 (19%), Positives = 88/219 (40%), Gaps = 9/219 (4%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR----DNKEEVLKKAE 108
           + + F    G+L    + RE + K  + +   +++++  +  + +     +  +   KA 
Sbjct: 3   VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 62

Query: 109 ADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNA 168
                VK    + L  +     +++    +   +Q  V  A F  +  T TL+  E +  
Sbjct: 63  EHFGTVKTHL-TSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 121

Query: 169 GLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRE 228
            L    D   +   ++V DYL G+  L  EL RL++  ++ G+      I  F  ++   
Sbjct: 122 ILGIEPDRE-KGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 180

Query: 229 LTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 267
             L+      N  ++ + D +   V K+E     + +RG
Sbjct: 181 FRLLNL---KNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1j1ja_	217	Translin {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-64  Score=446.78  Aligned_cols=213  Identities=19%  Similarity=0.347  Sum_probs=199.7

Q ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022963           51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD----NKEEVLKKAEADLEAVKDQYISRLVKEL  126 (289)
Q Consensus        51 ~~~~~~F~~~~~eLd~~~d~REriik~SRdIt~~SKkiIf~LHR~~~~----~~~~~l~~A~~~l~~v~~~~l~~La~~l  126 (289)
                      |++.++|++|+++||++||+||+|+|+|||||+.||++||+|||++..    ..++++++|++.++++++ .+.+|++++
T Consensus         1 m~~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~l~~~~   79 (217)
T d1j1ja_           1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTKF   79 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence            568899999999999999999999999999999999999999998653    356899999999999987 789999999


Q ss_pred             cCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhh
Q 022963          127 QGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGR  206 (289)
Q Consensus       127 ~~~~~~ry~~~~s~~lQEyVEA~sf~~~L~~~~Llt~eev~~~l~~l~~~~~~~l~V~~~DYLlGL~DLtGELmR~ain~  206 (289)
                      ++.++|+|++.|++|+||||||++|++|+++|+|+|++++++.+. ++.+...+++|+++|||+||+||||||||+|||+
T Consensus        80 ~~~~~y~y~~~~~~~lQE~vEA~~f~~~l~~~~l~s~eev~~~l~-~~~~~~~~~~v~~~dYL~Gl~DltGEL~R~ain~  158 (217)
T d1j1ja_          80 PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILG-IEPDREKGFHLDVEDYLSGVLILASELSRLSVNS  158 (217)
T ss_dssp             CGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT-CCCSSSSSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHhHhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC-CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998774 3344566799999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhheeeecc
Q 022963          207 ISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGS  268 (289)
Q Consensus       207 v~~Gd~e~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKvE~v~Ydl~vRg~  268 (289)
                      ++.||++.|.++|+||++||.+|+.|  +++ |++||||+|++||||+|||++|||++|||+
T Consensus       159 v~~gd~~~~~~i~~f~~~l~~~f~~l--~~~-~~~LrkK~d~~k~sl~KvE~~~Ydl~vRGl  217 (217)
T d1j1ja_         159 VTAGDYSRPLHISTFINELDSGFRLL--NLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGF  217 (217)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHTTC--CCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHhh--cCC-ChhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999  555 899999999999999999999999999996