Citrus Sinensis ID: 022965

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MEQSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISIARK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHccccEEEEcccccEEEEEEEEccccEEEEEEEEccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccEEEEEEccEEEEEEEEEccccccccccEEccccHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEEccccEEEEEEEEccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccEEEEEccccEEEEEEEccccccccccEEEEcccHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEcccccHccccccccccccccccHcccHHHHHHHHHHHHHccccccEEEEEccccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
meqsrcresansssfsrSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEiqldknyprsppsisadvpyifnlKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKslwvidlknpsranvCRQINLGYNCIIMLSihiddpsslpecrfmgsdpmvnSLRKTWQRnskrwnkdkpFVENVANLLEtqlprppehennyqqvecgicyaqflpideelgaksgggtdytcdnsscskafhsVCLGDWLRSITTTRQSYDVlfgncpycsepvAVKISIARK
Flexible Loop (DISEMBL)
meqsrcresansssfsrsvYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIqldknyprsppsisADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQrnskrwnkdkpFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFgncpycsepvavkISIARK
Low Complexity Region (SEG)
MEQsrcresansssfsrsvyseieEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISIARK
Disordered region (IsUnstruct)
******************VYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYP****SISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFM*************************FVENVANLL************NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS****
Disordered Region (DISOPRED)
**************FSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISIA**
Disordered Region (DISEMBL)
******************VYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISIARK
Disordered Region (DISPRO)
********SANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPIDE*L*AKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISI***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRxxxxxxxxxxxxxxxxxxxxxWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISIARK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9CR14	375	E3 ubiquitin-protein liga	yes	no	0.916	0.706	0.335	8e-50
Q9NW38	375	E3 ubiquitin-protein liga	yes	no	0.906	0.698	0.346	6e-49

>sp|Q9CR14|FANCL_MOUSE E3 ubiquitin-protein ligase FANCL OS=Mus musculus GN=Fancl PE=1 SV=1

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 151/274 (55%), Gaps = 9/274 (3%)

Query: 12  SSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSIS 71
           S SF + + +EI  +GW+ L  +      +  +  D  GR H + ++L   YP  PP   
Sbjct: 107 SCSFCKDLLTEIGAIGWDKLACVESSFSTIKLKADDASGRKHLITVKLKAKYPVEPPDCV 166

Query: 72  ADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCR 131
            D P  F++ W+ +S L D+  QF   LE L+  W+++DEID+  WV++ + P R+   R
Sbjct: 167 VDFPVPFSVSWTPQSSLVDVYSQFLVALETLKVFWDVMDEIDEKTWVLEPEKPPRSATAR 226

Query: 132 QINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVAN 191
           +I LG N  I + +    P+ LPE  F+G+D +   L      +   W+ +   ++N+ +
Sbjct: 227 RIALGKNVSIAIEVDPRHPTMLPEFCFLGADHVTKPLGMKLSGSIHLWDPENSLLQNLKD 286

Query: 192 LLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVC 251
           +LE   P     E +   ++CGICYA+ L         +G   D  C+N  C + FH +C
Sbjct: 287 VLEIDFPARSILEESDFSMDCGICYARHL---------NGAIPDQVCNNPQCGQPFHEIC 337

Query: 252 LGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           L +WLR ++T+RQS++V FG+CPYCS+P+ +K+S
Sbjct: 338 LYEWLRGLSTSRQSFNVFFGDCPYCSKPITLKMS 371

Ubiquitin ligase protein that mediates monoubiquitination of FANCD2, a key step in the DNA damage pathway. Also mediates monoubiquitination of FANCI. May stimulate the ubiquitin release from UBE2W. May be required for proper primordial germ cell proliferation in the embryonic stage, whereas it is probably not needed for spermatogonial proliferation after birth.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9NW38|FANCL_HUMAN E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1 SV=2

 Score =  194 bits (493), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 145/271 (53%), Gaps = 9/271 (3%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADV 74
           F  S+  EI  +GW+ LV        +  +  D  GR H + ++L   YP   P    D 
Sbjct: 110 FYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDF 169

Query: 75  PYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQIN 134
           P  F   W+ +S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I 
Sbjct: 170 PVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIA 229

Query: 135 LGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLE 194
           LG N  I + +    P+ LPEC F+G+D +V  L     RN   W+ +   ++N+ ++LE
Sbjct: 230 LGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLE 289

Query: 195 TQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD 254
              P     E +   ++CGICYA  L          G   D  CDNS C + FH +CL +
Sbjct: 290 IDFPARAILEKSDFTMDCGICYAYQL---------DGTIPDQVCDNSQCGQPFHQICLYE 340

Query: 255 WLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           WLR + T+RQS++++FG CPYCS+P+ +K+S
Sbjct: 341 WLRGLLTSRQSFNIIFGECPYCSKPITLKMS 371

Ubiquitin ligase protein that mediates monoubiquitination of FANCD2, a key step in the DNA damage pathway. Also mediates monoubiquitination of FANCI. May stimulate the ubiquitin release from UBE2W. May be required for proper primordial germ cell proliferation in the embryonic stage, whereas it is probably not needed for spermatogonial proliferation after birth.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
224097206	270	predicted protein [Populus trichocarpa]	0.927	0.992	0.705	1e-109
79332463	300	zinc ion binding protein [Arabidopsis th	0.979	0.943	0.614	1e-101
297797607	308	hypothetical protein ARALYDRAFT_496810 [	0.986	0.925	0.627	1e-100
255582393	309	Ubiquitin ligase protein FANCL, putative	0.868	0.812	0.661	1e-98
212721800	322	uncharacterized protein LOC100192745 [Ze	0.944	0.847	0.555	2e-88
195620462	322	ubiquitin ligase protein FANCL [Zea mays	0.941	0.844	0.557	2e-87
357115395	311	PREDICTED: E3 ubiquitin-protein ligase F	0.937	0.871	0.572	5e-87
115455075	308	Os03g0726900 [Oryza sativa Japonica Grou	0.958	0.899	0.542	2e-85
242033117	361	hypothetical protein SORBIDRAFT_01g00949	0.913	0.731	0.553	1e-84
218193683	308	hypothetical protein OsI_13372 [Oryza sa	0.958	0.899	0.542	2e-84

>gi|224097206|ref|XP_002310876.1| predicted protein [Populus trichocarpa] gi|222853779|gb|EEE91326.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/268 (70%), Positives = 223/268 (83%)

Query: 22  EIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLK 81
           +IEEVGWE LVR   DL+FLSFR+ DKKGRVH MEIQLDK YP+ PPS+SA+VPYIFN+K
Sbjct: 1   QIEEVGWERLVRFGGDLEFLSFRITDKKGRVHIMEIQLDKTYPQKPPSVSAEVPYIFNVK 60

Query: 82  WSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCII 141
           WS KSRLKDL+ QFREHLE+LQE W+ L++ID SL V + K  SRA  CRQI++G +C I
Sbjct: 61  WSVKSRLKDLVLQFREHLEELQEFWSTLEDIDHSLCVTNKKKLSRATTCRQIDIGNDCSI 120

Query: 142 MLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPP 201
           MLSI+  DP SLPECRFMGS P+VN +RK W RN+KRW KDK   EN+A +LET+LPRP 
Sbjct: 121 MLSINARDPRSLPECRFMGSGPVVNPVRKLWLRNNKRWMKDKTLPENLAFILETELPRPS 180

Query: 202 EHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITT 261
               N QQVECGICYAQ+LPIDEELG++SG GTD+TCDN+SC +AFH+VCL DWLRSITT
Sbjct: 181 HVLENDQQVECGICYAQYLPIDEELGSRSGAGTDHTCDNTSCGRAFHTVCLVDWLRSITT 240

Query: 262 TRQSYDVLFGNCPYCSEPVAVKISIARK 289
           TRQS+DVLFGNCPYCSEPVAVK++  +K
Sbjct: 241 TRQSFDVLFGNCPYCSEPVAVKLNDKKK 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79332463|ref|NP_001032152.1| zinc ion binding protein [Arabidopsis thaliana] gi|222424329|dbj|BAH20121.1| AT5G65740 [Arabidopsis thaliana] gi|332010715|gb|AED98098.1| zinc ion binding protein [Arabidopsis thaliana]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/288 (61%), Positives = 226/288 (78%), Gaps = 5/288 (1%)

Query: 3   QSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKN 62
           + RC E A SSSF R VYSEIEE+GWE + RL  DL F SF ++DKKGR H +EIQL+++
Sbjct: 11  RERCEELAKSSSFYRKVYSEIEEIGWEPIRRLGGDLTFFSFHILDKKGRAHNLEIQLNRD 70

Query: 63  YPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLK 122
           YP SPPS+SADVPY+F L+WS  SRLKD++ QF++HL+ LQE W++LD IDKSL V+D+K
Sbjct: 71  YPNSPPSVSADVPYMFTLEWSTSSRLKDVMHQFQKHLDYLQEFWSVLDNIDKSLCVVDVK 130

Query: 123 NPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDP---MVNSLRKTWQRNSKRW 179
            P+RA+  R+I+ G +CII++ I   DP SLPE RF+G  P    +N+L   W+RN KRW
Sbjct: 131 QPARASAIRRIDAGNDCIIIVHIDFKDPKSLPESRFIGPVPSATHMNNLHMLWRRNCKRW 190

Query: 180 NKDKPFVENVANLLETQLPRP--PEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYT 237
           + ++ F EN+  +L T+LP+P   + E++ QQVECGICYAQFLP DEELGA+SG  TDYT
Sbjct: 191 SNERSFPENLECILGTELPKPLGLQVEDDQQQVECGICYAQFLPTDEELGARSGTRTDYT 250

Query: 238 CDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           C+N SC+K+FHS+CL DWLRSITTTRQS+DVLFGNCPYCS+PVAVK S
Sbjct: 251 CENISCNKSFHSLCLTDWLRSITTTRQSFDVLFGNCPYCSDPVAVKTS 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797607|ref|XP_002866688.1| hypothetical protein ARALYDRAFT_496810 [Arabidopsis lyrata subsp. lyrata] gi|297312523|gb|EFH42947.1| hypothetical protein ARALYDRAFT_496810 [Arabidopsis lyrata subsp. lyrata]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/290 (62%), Positives = 230/290 (79%), Gaps = 5/290 (1%)

Query: 1   MEQSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLD 60
           + + RC E A SSSF R VYSEIEE+GWE L RL  DL F SF++ DKKGR H +E QL+
Sbjct: 9   IGRERCEELAKSSSFYRKVYSEIEEIGWEPLRRLGGDLTFFSFQIFDKKGRAHNLEFQLN 68

Query: 61  KNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVID 120
           ++YP SPPS+SADVPY+F L+WS  SRLKDL+ QF++HL+ LQE W++LD+IDKSL ++D
Sbjct: 69  RDYPNSPPSVSADVPYMFTLEWSTSSRLKDLMYQFQKHLDYLQEFWSVLDDIDKSLCIVD 128

Query: 121 LKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDP---MVNSLRKTWQRNSK 177
            K PSRA+  R+I+ G +CI+++ I   DP SLPECRF+G  P    +NSL   W+RNSK
Sbjct: 129 AKQPSRASAIRRIHAGNDCILIVHIDFKDPKSLPECRFIGPVPPATHMNSLHMLWRRNSK 188

Query: 178 RWNKDKPFVENVANLLETQLPRP--PEHENNYQQVECGICYAQFLPIDEELGAKSGGGTD 235
           +W+K++PF EN+  +L T+LP+P   + E N QQVECGICYAQFLP DEELGA+SG  TD
Sbjct: 189 KWSKERPFPENLECILGTELPKPLGLQEEENQQQVECGICYAQFLPTDEELGARSGTQTD 248

Query: 236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           YTC+N SC+K+FHS+CL DWLRSITTTRQS+DVLFGNCPYCS+PVAVKI+
Sbjct: 249 YTCENISCNKSFHSLCLTDWLRSITTTRQSFDVLFGNCPYCSDPVAVKIN 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582393|ref|XP_002531985.1| Ubiquitin ligase protein FANCL, putative [Ricinus communis] gi|223528344|gb|EEF30384.1| Ubiquitin ligase protein FANCL, putative [Ricinus communis]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 166/251 (66%), Positives = 209/251 (83%)

Query: 38  LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFRE 97
           L F+     DKKGRVH +E+QLD+ +PR PPS+SADVPYIF+++WS  SRLKDL+QQF E
Sbjct: 10  LTFVYLSSRDKKGRVHILEVQLDETHPRHPPSVSADVPYIFSVRWSMNSRLKDLMQQFHE 69

Query: 98  HLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECR 157
           HLEKLQE W+ L++ID SL V+D+   S A   RQI++G +C IML I+  DP SLPECR
Sbjct: 70  HLEKLQEFWSTLEDIDNSLCVVDIHKSSHAISFRQIDIGNDCFIMLFINTKDPRSLPECR 129

Query: 158 FMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYA 217
           F+GS P+ +SLRK WQRN K+W +DK F+EN+ ++LET+LP+PP+ + N QQ+ECGICYA
Sbjct: 130 FLGSGPVAHSLRKRWQRNCKQWMQDKTFLENLLSILETELPKPPDVQKNDQQIECGICYA 189

Query: 218 QFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCS 277
           Q+LPID+ELG +SG GTDYTCDNS+C++AFHS+CLGDWLRSITTTRQSY+VLFGNCPYCS
Sbjct: 190 QYLPIDDELGPRSGTGTDYTCDNSNCNRAFHSICLGDWLRSITTTRQSYNVLFGNCPYCS 249

Query: 278 EPVAVKISIAR 288
           EPVAVKI+ A+
Sbjct: 250 EPVAVKINYAK 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721800|ref|NP_001131416.1| uncharacterized protein LOC100192745 [Zea mays] gi|194691460|gb|ACF79814.1| unknown [Zea mays] gi|413933185|gb|AFW67736.1| ubiquitin ligase protein FANCL [Zea mays]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/277 (55%), Positives = 206/277 (74%), Gaps = 4/277 (1%)

Query: 13  SSFSRSVYSEIEEVGWEHLVRLSED-LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSIS 71
           ++F  SV+++IEE+GW+ LV  + D +  L+FRV+D+ GR+H +EI L   YP SPPSIS
Sbjct: 44  AAFYSSVFAQIEEIGWKQLVSATGDGVSCLTFRVVDEPGRMHLLEITLPMGYPESPPSIS 103

Query: 72  ADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCR 131
           ADVPY+  + WS+ SRLKD++ QF+ HL+ LQE WN +DEIDK LW++D   PS A   R
Sbjct: 104 ADVPYLPKIHWSKNSRLKDVICQFQAHLKILQEFWNTMDEIDKVLWIVDPTKPSYAMSHR 163

Query: 132 QINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVAN 191
           +I LG +C I+L +    P+SLPECRF+G+D  ++ L   W++N K+W+  K F EN+A 
Sbjct: 164 RIALGDDCYILLQVDARKPNSLPECRFLGTDGKLDQLIINWRKNRKKWDTKKKFHENLAA 223

Query: 192 LLETQLPRPP---EHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFH 248
           +L+  LP PP   +   + +Q +CGICYA+ LP+D+ELGA SG  TDY C+N SCS+AFH
Sbjct: 224 VLDFALPSPPSVGDKAKDDEQADCGICYAKHLPVDDELGAHSGCATDYMCENPSCSRAFH 283

Query: 249 SVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           SVCL DWLRSITTTRQS+DVLFGNCPYCS+PVAVKI+
Sbjct: 284 SVCLRDWLRSITTTRQSFDVLFGNCPYCSDPVAVKIT 320

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195620462|gb|ACG32061.1| ubiquitin ligase protein FANCL [Zea mays]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/276 (55%), Positives = 204/276 (73%), Gaps = 4/276 (1%)

Query: 14  SFSRSVYSEIEEVGWEHLVRLSED-LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISA 72
           SF  SV+++IEE+GW+ LV  + D +  L+FRV+D+ GR+H +EI L   YP SPPSISA
Sbjct: 45  SFYSSVFAQIEEIGWKQLVSATGDGVSCLTFRVVDEPGRMHLLEITLPMGYPESPPSISA 104

Query: 73  DVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQ 132
           DVPY+  + WS+ SRLKD++ QF+ HL+ LQE WN +DEIDK LW++D   PS A   R+
Sbjct: 105 DVPYLPKINWSKNSRLKDVICQFQAHLKILQEFWNTMDEIDKVLWIVDPTKPSYAMSHRR 164

Query: 133 INLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANL 192
           I LG +C I+L +    P+SLPECRF+G+D  ++ L   W++N K+W+  K F EN+A +
Sbjct: 165 IALGDDCYILLQVDARKPNSLPECRFLGTDGKLDQLIINWRKNRKKWDTKKKFHENLAAV 224

Query: 193 LETQLPRPP---EHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHS 249
           L+  LP  P   +   + +Q +CGICYA+ LP+D+ELGA SG  TDY C+N SCS+AFHS
Sbjct: 225 LDFALPSXPSVGDKAKDDEQADCGICYAKHLPVDDELGAHSGCATDYMCENPSCSRAFHS 284

Query: 250 VCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           VCL DWLRSITTTRQS+DVLFGNCPYCS+PVAVKI+
Sbjct: 285 VCLRDWLRSITTTRQSFDVLFGNCPYCSDPVAVKIT 320

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357115395|ref|XP_003559474.1| PREDICTED: E3 ubiquitin-protein ligase FANCL-like [Brachypodium distachyon]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 157/274 (57%), Positives = 202/274 (73%), Gaps = 3/274 (1%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSED--LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISA 72
           F  SV+++IEEVGW  LV  + D  +  L+FRV+D++GR H +E+ L  NYP  PPSISA
Sbjct: 36  FYSSVFAQIEEVGWGRLVTATGDDGVSCLAFRVMDEQGRQHLLEVTLPMNYPACPPSISA 95

Query: 73  DVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQ 132
           DVP +  L+WS+ SRLKD++ QF+EHL+ LQ  W  +D+IDK+LWV+D   PS A   R+
Sbjct: 96  DVPCLPKLQWSKLSRLKDVVCQFQEHLKNLQNYWCTMDDIDKALWVVDPTKPSYAMSHRR 155

Query: 133 INLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANL 192
           I LG +C I+L +    PSSLPECRF+G+D  +  L K W++N KRW  DK F EN++ +
Sbjct: 156 IALGDDCYILLHVDAHKPSSLPECRFLGTDGKLERLIKNWRKNRKRWTADKKFHENLSTV 215

Query: 193 LETQLPRPPEHE-NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVC 251
           L+ +LP+PP     + QQ +CGICYA  LPID+ELG  SG  TDYTC+NSSC +AFHSVC
Sbjct: 216 LDFELPQPPSVSIKDDQQADCGICYATHLPIDDELGTDSGCATDYTCENSSCDRAFHSVC 275

Query: 252 LGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           L DWL +ITTTRQS+DVLFGNCPYCSEPVAVKI+
Sbjct: 276 LRDWLCTITTTRQSFDVLFGNCPYCSEPVAVKIA 309

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115455075|ref|NP_001051138.1| Os03g0726900 [Oryza sativa Japonica Group] gi|41469280|gb|AAS07162.1| expressed protein (with alternative splicing) [Oryza sativa Japonica Group] gi|108710855|gb|ABF98650.1| Ubiquitin ligase protein FANCL, putative, expressed [Oryza sativa Japonica Group] gi|113549609|dbj|BAF13052.1| Os03g0726900 [Oryza sativa Japonica Group] gi|215704189|dbj|BAG93029.1| unnamed protein product [Oryza sativa Japonica Group] gi|222625718|gb|EEE59850.1| hypothetical protein OsJ_12426 [Oryza sativa Japonica Group]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 208/280 (74%), Gaps = 3/280 (1%)

Query: 9   SANSSSFSRSVYSEIEEVGWEHLVRLSED--LKFLSFRVIDKKGRVHCMEIQLDKNYPRS 66
           S   ++F  +V+++IEEVGWE LV    D  +  L FR++D +GR H +EI L  NYP S
Sbjct: 27  SRRPAAFYSAVFAQIEEVGWERLVSGKGDGGVSCLVFRILDDQGRNHLLEITLPMNYPSS 86

Query: 67  PPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSR 126
           PP + ADVPY+  L+WS+ SRLKD++ QF+EHL+ LQ+ W+I+D+IDK LWV+D   P+ 
Sbjct: 87  PPCLVADVPYLPELQWSKGSRLKDVVCQFQEHLKILQDYWSIMDDIDKVLWVVDPTKPTF 146

Query: 127 ANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFV 186
           A   R+I LG +C ++L +++  P SLPE RF+G+D  ++ L   W++  K+W+ DK F 
Sbjct: 147 AMSHRRIALGDDCYLLLHVNVRKPRSLPEVRFLGTDGKLDRLITNWRKYCKKWSADKKFH 206

Query: 187 ENVANLLETQLPRPPE-HENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSK 245
           EN++ +L+  LP PP  +  + +QV+CGICYA+ LPID+ELG  SGG TDYTC+N SCS+
Sbjct: 207 ENLSTVLDFALPPPPSVNIEDDEQVDCGICYAKHLPIDDELGTHSGGTTDYTCENPSCSR 266

Query: 246 AFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           AFHSVCL DWLR+ITTTRQS+DVLFGNCPYCS+PVAVKI+
Sbjct: 267 AFHSVCLRDWLRAITTTRQSFDVLFGNCPYCSDPVAVKIT 306

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242033117|ref|XP_002463953.1| hypothetical protein SORBIDRAFT_01g009490 [Sorghum bicolor] gi|241917807|gb|EER90951.1| hypothetical protein SORBIDRAFT_01g009490 [Sorghum bicolor]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/269 (55%), Positives = 199/269 (73%), Gaps = 5/269 (1%)

Query: 22  EIEEVGWEHLVRLSED--LKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFN 79
           +IEE+GWE +V  + D  +  L+FRV+D+ GR+H +EI L   YP  PPSISAD+PY+  
Sbjct: 91  QIEEIGWEQVVSATGDDGVSCLTFRVVDEAGRIHLLEITLPMGYPECPPSISADIPYLPK 150

Query: 80  LKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNC 139
           ++WS+ SRLKD+L QF+ HL+ LQE W+ +DEIDK LW++D   PS A   R+I+LG +C
Sbjct: 151 IQWSKSSRLKDVLCQFQAHLKILQEFWSTMDEIDKVLWIVDPTKPSYAMSHRRISLGDDC 210

Query: 140 IIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPR 199
            I+L +    P+SLPECRF+G+D  ++ L   W++N K+W+  K F EN+  +L+  LP 
Sbjct: 211 YILLHVDARKPNSLPECRFLGTDDKLDQLIINWRKNRKKWDAKKKFHENLTAVLDFALPA 270

Query: 200 PPEHENNY---QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWL 256
           PP    N    +Q +CGICYA+ LP+D+ELGA SG  TDYTC+N SCS+AFHSVCL DWL
Sbjct: 271 PPLVSCNVKDDEQADCGICYAKHLPVDDELGAHSGCVTDYTCENPSCSRAFHSVCLRDWL 330

Query: 257 RSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           RSIT+TRQS+DVLFGNCPYCS+PVAVKI+
Sbjct: 331 RSITSTRQSFDVLFGNCPYCSDPVAVKIT 359

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218193683|gb|EEC76110.1| hypothetical protein OsI_13372 [Oryza sativa Indica Group]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 206/280 (73%), Gaps = 3/280 (1%)

Query: 9   SANSSSFSRSVYSEIEEVGWEHLVRLSED--LKFLSFRVIDKKGRVHCMEIQLDKNYPRS 66
           S   ++F  +V+++IEEVGWE LV    D  +  L FR++D +GR H +EI L  NYP S
Sbjct: 27  SRRPAAFYSAVFAQIEEVGWERLVSGKGDGGVSCLVFRILDDQGRNHLLEITLPMNYPSS 86

Query: 67  PPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSR 126
           PP + ADVPY+  L+WS+ SRLKD++ QF+EHL+ LQ+ W+I+D+IDK LWV+D   P+ 
Sbjct: 87  PPCLVADVPYLPELQWSKGSRLKDVVCQFQEHLKILQDYWSIMDDIDKVLWVVDPTKPTF 146

Query: 127 ANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFV 186
           A   R I LG +C ++L ++   P SLPE RF+G+D  ++ L   W++  K+W+ DK F 
Sbjct: 147 AMSHRCIALGDDCYLLLHVNARKPRSLPEVRFLGTDGKLDRLITNWRKYCKKWSADKKFH 206

Query: 187 ENVANLLETQLPRPPE-HENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSK 245
           EN++ +L+  LP PP  +  + +QV+CGICYA+ LPID+ELG  SGG TDYTC+N SCS+
Sbjct: 207 ENLSTVLDFALPPPPSVNIEDDEQVDCGICYAKHLPIDDELGTHSGGTTDYTCENPSCSR 266

Query: 246 AFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           AFHSVCL DWLR+ITTTRQS+DVLFGNCPYCS+PVAVKI+
Sbjct: 267 AFHSVCLRDWLRAITTTRQSFDVLFGNCPYCSDPVAVKIT 306

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2169995	300	AT5G65740 [Arabidopsis thalian	0.903	0.87	0.609	5.1e-90
ZFIN|ZDB-GENE-040426-1045	371	fancl "Fanconi anemia, complem	0.865	0.673	0.351	1.2e-47
UNIPROTKB|Q2TBN8	374	FANCL "Fanconi anemia, complem	0.875	0.676	0.352	1e-45
UNIPROTKB|Q9NW38	375	FANCL "E3 ubiquitin-protein li	0.878	0.677	0.348	5.6e-45
MGI|MGI:1914280	375	Fancl "Fanconi anemia, complem	0.878	0.677	0.337	9.1e-45
UNIPROTKB|Q3MUH5	373	FANCL "Uncharacterized protein	0.878	0.680	0.338	1.2e-44
RGD|1311427	375	Fancl "Fanconi anemia, complem	0.878	0.677	0.329	5e-44
UNIPROTKB|B5MCZ6	258	FANCL "E3 ubiquitin-protein li	0.826	0.926	0.353	4.5e-43
UNIPROTKB|E2R5Y4	378	FANCL "Uncharacterized protein	0.875	0.669	0.332	5.7e-43
UNIPROTKB|F1SQL5	330	LOC100526164 "Uncharacterized	0.868	0.760	0.337	2.5e-42

TAIR|locus:2169995 AT5G65740 [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 162/266 (60%), Positives = 210/266 (78%)

Query:    25 EVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSR 84
             E+GWE + RL  DL F SF ++DKKGR H +EIQL+++YP SPPS+SADVPY+F L+WS 
Sbjct:    33 EIGWEPIRRLGGDLTFFSFHILDKKGRAHNLEIQLNRDYPNSPPSVSADVPYMFTLEWST 92

Query:    85 KSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLS 144
              SRLKD++ QF++HL+ LQE W++LD IDKSL V+D+K P+RA+  R+I+ G +CII++ 
Sbjct:    93 SSRLKDVMHQFQKHLDYLQEFWSVLDNIDKSLCVVDVKQPARASAIRRIDAGNDCIIIVH 152

Query:   145 IHIDDPSSLPECRFMGSDPM---VNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPP 201
             I   DP SLPE RF+G  P    +N+L   W+RN KRW+ ++ F EN+  +L T+LP+P 
Sbjct:   153 IDFKDPKSLPESRFIGPVPSATHMNNLHMLWRRNCKRWSNERSFPENLECILGTELPKPL 212

Query:   202 --EHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSI 259
               + E++ QQVECGICYAQFLP DEELGA+SG  TDYTC+N SC+K+FHS+CL DWLRSI
Sbjct:   213 GLQVEDDQQQVECGICYAQFLPTDEELGARSGTRTDYTCENISCNKSFHSLCLTDWLRSI 272

Query:   260 TTTRQSYDVLFGNCPYCSEPVAVKIS 285
             TTTRQS+DVLFGNCPYCS+PVAVK S
Sbjct:   273 TTTRQSFDVLFGNCPYCSDPVAVKTS 298

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1045 fancl "Fanconi anemia, complementation group L" [Danio rerio (taxid:7955)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 91/259 (35%), Positives = 149/259 (57%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ L+ +  + + L  +  D  GR H + ++L   YP   P  SAD+P    + W+ +
Sbjct:   117 LGWDKLLFIDAEFRTLQLKAEDSAGRQHAITVKLKSKYPAEAPEFSADLPIPLVITWTSQ 176

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L ++  QF  ++E L + W++LDEID+  WV++ + P++A+  R+I +G N  I + I
Sbjct:   177 STLANVHSQFLLNVEALSDFWSVLDEIDEKTWVLEPEKPTKADSTRRIAIGNNVSIKVQI 236

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHEN 205
                 P  LPEC  +G++ +V  LR     N   WN D   ++N+ ++LE + P P  H  
Sbjct:   237 DPRHPKMLPECCLLGAEHVVTPLRNKLNANMHLWNPDCTVLQNMKDVLEIEFPSPTTHGK 296

Query:   206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQS 265
             +   VECGICY+  L  +  +        D  C++  C + FH VCL +WLR + T+RQS
Sbjct:   297 SSFSVECGICYSYRL--ESAI-------PDQVCNDPRCGQPFHQVCLYEWLRGLPTSRQS 347

Query:   266 YDVLFGNCPYCSEPVAVKI 284
             ++++FG CPYCS+P+ VK+
Sbjct:   348 FNIVFGECPYCSKPITVKM 366

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISS

GO:0006281 "DNA repair" evidence=IEA

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048599 "oocyte development" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q2TBN8 FANCL "Fanconi anemia, complementation group L" [Bos taurus (taxid:9913)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 93/264 (35%), Positives = 147/264 (55%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ LV +      +  +  D  GR H + ++L   YP   P    D P  F++ W+ +
Sbjct:   121 LGWDKLVFVDPCFSTIKLKA-DVSGREHLITVKLKAKYPAESPDCVVDFPVPFSVSWTPQ 179

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L  +  QF   LE L+  W+++DEID+  WV++ + P+R+   R+I LG N  I + +
Sbjct:   180 SSLISIYTQFLAALESLKTFWDVMDEIDEKTWVLEPEKPTRSATARRIVLGNNVSINIEV 239

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHEN 205
                 P+ LPEC F+G+D +V  L     RN   W+ +   ++N+ ++LE   P     E 
Sbjct:   240 DPRHPTMLPECCFLGADHVVKPLGIRLSRNIHLWDPENSLLQNLKDVLEIDFPARAILEK 299

Query:   206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQS 265
             +   ++CGICYA  L          G   D  CDNS C ++FH +CL +WLR + T+RQS
Sbjct:   300 SDFSMDCGICYAYQL---------DGAIPDQVCDNSQCGQSFHYICLYEWLRGLLTSRQS 350

Query:   266 YDVLFGNCPYCSEPVAVKISIARK 289
             ++++FG CPYCS+P+ +K+S  RK
Sbjct:   351 FNIIFGECPYCSKPITLKMS-GRK 373

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9NW38 FANCL "E3 ubiquitin-protein ligase FANCL" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 92/264 (34%), Positives = 142/264 (53%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ LV        +  +  D  GR H + ++L   YP   P    D P  F   W+ +
Sbjct:   121 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ 180

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I LG N  I + +
Sbjct:   181 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV 240

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHEN 205
                 P+ LPEC F+G+D +V  L     RN   W+ +   ++N+ ++LE   P     E 
Sbjct:   241 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK 300

Query:   206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQS 265
             +   ++CGICYA  L          G   D  CDNS C + FH +CL +WLR + T+RQS
Sbjct:   301 SDFTMDCGICYAYQL---------DGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQS 351

Query:   266 YDVLFGNCPYCSEPVAVKISIARK 289
             ++++FG CPYCS+P+ +K+S  RK
Sbjct:   352 FNIIFGECPYCSKPITLKMS-GRK 374

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA;TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0006281 "DNA repair" evidence=IMP;TAS

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

MGI|MGI:1914280 Fancl "Fanconi anemia, complementation group L" [Mus musculus (taxid:10090)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 89/264 (33%), Positives = 145/264 (54%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ L  +      +  +  D  GR H + ++L   YP  PP    D P  F++ W+ +
Sbjct:   121 IGWDKLACVESSFSTIKLKADDASGRKHLITVKLKAKYPVEPPDCVVDFPVPFSVSWTPQ 180

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L D+  QF   LE L+  W+++DEID+  WV++ + P R+   R+I LG N  I + +
Sbjct:   181 SSLVDVYSQFLVALETLKVFWDVMDEIDEKTWVLEPEKPPRSATARRIALGKNVSIAIEV 240

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHEN 205
                 P+ LPE  F+G+D +   L      +   W+ +   ++N+ ++LE   P     E 
Sbjct:   241 DPRHPTMLPEFCFLGADHVTKPLGMKLSGSIHLWDPENSLLQNLKDVLEIDFPARSILEE 300

Query:   206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQS 265
             +   ++CGICYA+ L         +G   D  C+N  C + FH +CL +WLR ++T+RQS
Sbjct:   301 SDFSMDCGICYARHL---------NGAIPDQVCNNPQCGQPFHEICLYEWLRGLSTSRQS 351

Query:   266 YDVLFGNCPYCSEPVAVKISIARK 289
             ++V FG+CPYCS+P+ +K+S  RK
Sbjct:   352 FNVFFGDCPYCSKPITLKMS-GRK 374

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=ISO

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007276 "gamete generation" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0043240 "Fanconi anaemia nuclear complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q3MUH5 FANCL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/263 (33%), Positives = 140/263 (53%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW  +  +   L  +  +  D +GR H + ++L+  YP  PP    D P  F + W  +
Sbjct:   119 LGWNKVAYVDTGLTTVKLKAEDSRGRQHLITLKLNAKYPTEPPDCVVDFPVQFAISWMPQ 178

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
               L D+  QF   LE L+E W+ +DEID   WV++ +NP+R    R+I +G N  + + +
Sbjct:   179 DSLIDIHNQFLAALESLKEFWDTMDEIDGKTWVLEPENPARCATSRRIAIGNNVSVNIEV 238

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHEN 205
                 P  LPEC F+G+D  VN LR     N   W+ +   ++N+ +LLE   P     E 
Sbjct:   239 DPRHPKMLPECYFLGADHAVNPLRTKLNNNMHLWDPEISLLQNLKDLLEIDFPSRAALEK 298

Query:   206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQS 265
             +    +CGICYA  L         +G   D  C+   C + FH  CL +WL+ + ++RQS
Sbjct:   299 SDFTKDCGICYAYRL---------NGTTPDQVCNEPRCGQPFHQACLYEWLQGLPSSRQS 349

Query:   266 YDVLFGNCPYCSEPVAVKISIAR 288
             ++V+FG CPYC++P+ VK S+ +
Sbjct:   350 FNVIFGECPYCNKPLTVKSSMKK 372

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0007276 "gamete generation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=ISS;TAS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

RGD|1311427 Fancl "Fanconi anemia, complementation group L" [Rattus norvegicus (taxid:10116)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 87/264 (32%), Positives = 145/264 (54%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
             +GW+ L  +      +  +  D  GR H + ++L   YP  PP    D P  F++ W+ +
Sbjct:   121 IGWDKLACVDTSFTTIKLKADDASGRKHLITVKLKAKYPVEPPDCLVDFPIPFSVSWTPQ 180

Query:    86 SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
             S L ++  QF   LE L+  W+++DEID+  WV++ + P R+   R+I LG++  I + +
Sbjct:   181 SSLVNVYSQFSAALETLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGHDVSINIEV 240

Query:   146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHEN 205
                 P+ LPE  F+G+D +   L      N   W+ +   ++N+ ++LE   P     E 
Sbjct:   241 DPRHPTMLPEFCFLGADHVTKPLGMRLSGNIHLWDPENSLLQNLKDVLEIDFPARTVLEK 300

Query:   206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQS 265
             +   ++CGICYA+ L         +G   D  C+N  C + FH +CL +WLR ++++RQS
Sbjct:   301 SDFSMDCGICYARHL---------NGAIPDQVCNNPQCGQLFHQMCLYEWLRGLSSSRQS 351

Query:   266 YDVLFGNCPYCSEPVAVKISIARK 289
             ++V FG CPYCS+P+ +K+S  RK
Sbjct:   352 FNVFFGECPYCSKPITLKMS-GRK 374

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005635 "nuclear envelope" evidence=IEA;ISO

GO:0006281 "DNA repair" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007276 "gamete generation" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA;ISO

UNIPROTKB|B5MCZ6 FANCL "E3 ubiquitin-protein ligase FANCL" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 88/249 (35%), Positives = 136/249 (54%)

Query:    41 LSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLE 100
             +  +  D  GR H + ++L   YP   P    D P  F   W+ +S L  +  QF   +E
Sbjct:    19 IKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIE 78

Query:   101 KLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMG 160
              L+  W+++DEID+  WV++ + P R+   R+I LG N  I + +    P+ LPEC F+G
Sbjct:    79 SLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLG 138

Query:   161 SDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFL 220
             +D +V  L     RN   W+ +   ++N+ ++LE   P     E +   ++CGICYA  L
Sbjct:   139 ADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQL 198

Query:   221 PIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV 280
                       G   D  CDNS C + FH +CL +WLR + T+RQS++++FG CPYCS+P+
Sbjct:   199 ---------DGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECPYCSKPI 249

Query:   281 AVKISIARK 289
              +K+S  RK
Sbjct:   250 TLKMS-GRK 257

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

UNIPROTKB|E2R5Y4 FANCL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 89/268 (33%), Positives = 143/268 (53%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKW--- 82
             +GW+ LV +   L  +  +  D  GR H + ++L   YP   P    D P  F++ W   
Sbjct:   121 LGWDKLVYVDTCLSTIKLKAEDASGRKHLITLKLKTKYPTESPDCVVDFPVSFSVSWTPQ 180

Query:    83 --SRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCI 140
               S +S L  +  QF   LE L+  W+++DEID+  WV++ + P+R+   R+I L     
Sbjct:   181 VNSSQSSLISIYSQFLAALESLKAFWDVMDEIDEKTWVLEPEKPTRSATTRRIALENRAS 240

Query:   141 IMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRP 200
             I + +    P+ LPEC F+G+D +V  L     RN   W+ +   ++N+ ++LE   P  
Sbjct:   241 INIEVDPRHPTMLPECCFLGADHVVKPLGIKLSRNIHLWDPENSLLQNLKDVLEIDFPAR 300

Query:   201 PEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSIT 260
                E +   ++CGICYA  L          G   D  CDN  C + FH +CL +W+R + 
Sbjct:   301 ANLEKSDFSMDCGICYAYQL---------DGAIPDQVCDNLQCGQPFHQICLYEWVRGLL 351

Query:   261 TTRQSYDVLFGNCPYCSEPVAVKISIAR 288
             T+RQS+ ++FG CPYCS+P+ +K+S+ +
Sbjct:   352 TSRQSF-IIFGECPYCSKPITLKMSVRK 378

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1SQL5 LOC100526164 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 89/264 (33%), Positives = 145/264 (54%)

Query:    26 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYP-RSPPSISADVPYIFNLKWSR 84
             +GW+ LV +      +  +  D  GR H + ++L   YP +    +  DV   F++ W+ 
Sbjct:    72 LGWDKLVHVDTCFSTIKLKAEDASGREHLITVKLKAKYPSKETKVVFLDVXVSFSVSWTP 131

Query:    85 KSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLS 144
             +S L  +  QF E LE L+  W+++DEID+  WV++ + P+R+   R+I LG N  I + 
Sbjct:   132 QSSLISIHSQFLEALESLKAFWDVMDEIDEKTWVLEPEKPTRSATARRIALGNNSSINIE 191

Query:   145 IHIDDPSSLPECRFMGSD---PMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPP 201
             +    P+ LPEC F+G+D    +V  L     RN   W+ +   ++N+ ++LE   P   
Sbjct:   192 VDPRHPTMLPECCFLGADHVSEVVKPLGIKLSRNIHLWDPENSLLQNLKDVLEIDFPARA 251

Query:   202 EHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITT 261
               E +   ++CGICYA  L          G   D  CDN+ C ++FH VCL +WLR + T
Sbjct:   252 ILEKSDFSMDCGICYAYQL---------DGVIPDQVCDNAQCGQSFHQVCLYEWLRGLLT 302

Query:   262 TRQSYDVLFGNCPYCSEPVAVKIS 285
             +RQS++ +FG CPYCS+ + +K++
Sbjct:   303 SRQSFNTIFGECPYCSKLITLKMT 326

GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam11793	70	pfam11793, FANCL_C, FANCL C-terminal domain	1e-26
pfam09765	292	pfam09765, WD-3, WD-repeat region	3e-26

>gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain

 Score = 99.0 bits (247), Expect = 1e-26
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 8/78 (10%)

Query: 208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYD 267
            ++ECGICYA  L          G   D +CDN  C   FH  CL +WLR++  +RQS++
Sbjct: 1   FEIECGICYAYRLD--------GGEIPDISCDNPKCGLPFHIACLYEWLRTLRDSRQSFN 52

Query: 268 VLFGNCPYCSEPVAVKIS 285
           V FG CPYC   ++VK S
Sbjct: 53  VSFGTCPYCKAKISVKFS 70

This domain is found at the C-terminus of the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2. Length = 70

>gnl|CDD|192370 pfam09765, WD-3, WD-repeat region

 Score =  104 bits (261), Expect = 3e-26
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 13/192 (6%)

Query: 12  SSSFSRSVYSEIEEVGWEHLVRLSED-----LKFLSFRVIDKKGRVHCMEIQLDKNYPRS 66
              +  ++ +E+E +GW+ L  +  D     +K  +F    +    H + ++L   YP  
Sbjct: 98  PPQYYSNLITELEALGWDKLCYVQFDSSFSTIKLSAFDSFRQ----HYLTLKLKSKYPFE 153

Query: 67  PPSISADVPYIFNLKW-SRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPS 125
            P  S   P  F+      +S L+D L QF + LE L+E ++ LDEID+  WV++ + P+
Sbjct: 154 VPDHSLPDPVPFSESLTKSQSSLQDHLNQFLQLLESLEEFYDNLDEIDELCWVLEPEKPT 213

Query: 126 RANVCRQINLGYNCIIMLSIHIDDPSSLPEC---RFMGSDPMVNSLRKTWQRNSKRWNKD 182
                R+I LG N  + + +    P  LP      F+G   +V  LR+    N   W+ +
Sbjct: 214 TKATTRRIALGNNVSLKVEVDPRHPFMLPASMFLGFIGPTHVVAPLREKLSDNLHLWDPE 273

Query: 183 KPFVENVANLLE 194
              + N+  + E
Sbjct: 274 CSVLTNLLRIFE 285

This entry is of a region of approximately 100 residues containing three WD repeats and six cysteine residues possibly as three cystine-bridges. These regions are contained within the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2. The WD repeats are required for interaction with other subunits of the FA complex. Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	100.0
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	99.86
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.27
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.12
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.02
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	99.0
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.98
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.95
PHA02929	238	N1R/p28-like protein; Provisional	98.86
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.56
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.54
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.46
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.4
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.36
PHA02926	242	zinc finger-like protein; Provisional	98.29
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.15
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.12
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.12
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.04
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.97
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.95
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	97.94
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.87
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.79
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	97.69
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	97.68
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.63
PF14634	44	zf-RING_5: zinc-RING finger domain	97.58
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.54
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.22
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.18
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.14
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	96.86
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	96.78
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.47
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.41
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.0
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	95.78
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.75
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	95.69
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	95.62
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	95.62
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.37
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.35
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	95.26
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.26
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.2
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.15
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	94.94
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	94.84
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	94.51
PLN00172	147	ubiquitin conjugating enzyme; Provisional	94.49
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	94.48
PHA02862	156	5L protein; Provisional	94.36
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	94.28
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	94.14
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	93.99
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.96
KOG0825	1134	consensus PHD Zn-finger protein [General function	93.82
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	93.72
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	93.5
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.48
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	93.28
KOG3005	276	consensus GIY-YIG type nuclease [General function	92.45
KOG1002	791	consensus Nucleotide excision repair protein RAD16	92.25
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	91.89
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	91.58
KOG3002	299	consensus Zn finger protein [General function pred	90.74
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	89.84
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	89.49
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	89.43
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	89.08
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	87.15
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	87.12
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	86.87
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	85.83
KOG0297	391	consensus TNF receptor-associated factor [Signal t	85.66
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	85.35
KOG1940	276	consensus Zn-finger protein [General function pred	84.9
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	84.75
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	84.31
PHA03096	284	p28-like protein; Provisional	83.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.38
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	81.77
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	81.71
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	81.58
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	80.8
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	80.75
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	80.69
KOG3899	381	consensus Uncharacterized conserved protein [Funct	80.12

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-67  Score=456.22  Aligned_cols=233  Identities=34%  Similarity=0.579  Sum_probs=228.7

Q ss_pred             EeCCCCEEEEEEEeCCCCCCCCCCccccCCCccccccCccccHHHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCC
Q 022965           46 IDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPS  125 (289)
Q Consensus        46 ~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l~w~~~s~L~~i~~qF~~~le~lq~fwd~ldeID~~~wVleP~~P~  125 (289)
                      .|++||.|.+++++..+||++.|.-.+|.|++|-..|.|+|++..||+||.+++|+++.||+.||++|++|||+||++|.
T Consensus         2 edaSG~~h~i~l~~ea~~pae~pd~fvd~pi~FCad~~pqs~~IsiYsqflaa~esiea~~~~ide~deKT~l~e~ekP~   81 (234)
T KOG3268|consen    2 EDASGECHGIELCEEAAKPAEFPDKFVDEPINFCADVGPQSCAISIYSQFLAAFESIEACNAPIDEGDEKTLLHELEKPA   81 (234)
T ss_pred             CCcccchhHHHHHHHhcCccccchhhhcccccceeecCCcceehHHHHHHHHHHHhHHhhcCcCccccccchhccccCCc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEeCCceEEEEEEeCCCCCCCCceEEecCchhhhHHHHHhhhcccccCCCCchHHHHHHHhcccCCCCCCCcC
Q 022965          126 RANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHEN  205 (289)
Q Consensus       126 ~~~~~RrI~l~~~~sl~i~vdp~~P~~lP~~~flG~~~~v~~lr~~l~~n~~~Wd~~~~i~~NL~~il~~~~P~~~~~~~  205 (289)
                      |+.+.|||++||+|+|.|+|||+||.|||+|.|+|+++++.++.-+...|++.|+|..+.+||++..+++.||..+-.++
T Consensus        82 RaaaaRRIa~GNd~~I~ieiD~k~PkmLPEcf~lgadhv~~P~gie~~~~i~L~dPe~~~led~kd~lE~df~a~a~Lek  161 (234)
T KOG3268|consen   82 RAAAARRIAAGNDCIIIIEIDFKDPKMLPECFELGADHVSFPEGIECILGIELPDPEGLQLEDDKDQLECDFCAAAFLEK  161 (234)
T ss_pred             hHHHHHHhhcCCceEEEEEecCCCCccchhhHhhccccccccccceEEeccccCCccccccccccceeeeCccHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      +++...|||||.|.+         +|++||++|+|.+||+.||+-||++|||++.++||||+++||+||||++||++||+
T Consensus       162 dd~~~~cgicyayql---------dGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS  232 (234)
T KOG3268|consen  162 DDELGACGICYAYQL---------DGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS  232 (234)
T ss_pred             chhhhcccceeeeec---------CCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence            999999999999988         79999999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 022965          286 IA  287 (289)
Q Consensus       286 ~~  287 (289)
                      .+
T Consensus       233 gk  234 (234)
T KOG3268|consen  233 GK  234 (234)
T ss_pred             CC
Confidence            64

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=100.00  E-value=6e-64  Score=470.15  Aligned_cols=188  Identities=41%  Similarity=0.852  Sum_probs=163.8

Q ss_pred             ChhHHHHHHHHHHHhccceeeee--cCCcceEEEEEEeCCCCEEEEEEEeCCCCCCCCCCccccCCCccccccCc-cccH
Q 022965           12 SSSFSRSVYSEIEEVGWEHLVRL--SEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSR-KSRL   88 (289)
Q Consensus        12 ~~~~y~~l~~Ei~~igw~~l~~i--d~~l~~i~l~~~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l~w~~-~s~L   88 (289)
                      |++||++|++||++|||++++++  |++|++|+|+++|++ |+|+|+|+++++||.++|+|++|+|++|.+.|++ +|+|
T Consensus        97 p~~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D~~-R~H~l~l~l~~~yp~~~p~~~~~~P~~~~~~w~~~~ssL  175 (291)
T PF09765_consen   97 PPQYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFDSS-RQHYLELKLPSNYPFEPPSCSLDLPIPFSLSWSPSQSSL  175 (291)
T ss_dssp             --GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEETTC-EEEEEEEETTTTTTTSEEEECS-TTS-HHHHHHCHT-SH
T ss_pred             CcHHHHHHHHHHHHhccccceEEecCCCccEEEEEEEcCC-ceEEEEEEECCCCCCCCceeeCCCCcchhhhhcccccCH
Confidence            49999999999999999999999  999999999999999 9999999999999999999999999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEeCCCCCCCCceE---EecCchhh
Q 022965           89 KDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECR---FMGSDPMV  165 (289)
Q Consensus        89 ~~i~~qF~~~le~lq~fwd~ldeID~~~wVleP~~P~~~~~~RrI~l~~~~sl~i~vdp~~P~~lP~~~---flG~~~~v  165 (289)
                      .++++||+++||+||+|||+|||||++||||||++|+||+++||||||+||||+|+|||++|+|+|++.   |+|++++|
T Consensus       176 ~~v~~qF~~~le~lq~fw~~ld~iD~~~~VleP~~p~~~~~~RrI~l~~~~sl~i~vdP~~P~~~p~~~~l~f~G~~~~v  255 (291)
T PF09765_consen  176 KDVVQQFQEALESLQEFWDVLDEIDENCWVLEPEKPTRSDTYRRIALGNNVSLKIEVDPRHPRMLPECRFLGFIGPDHEV  255 (291)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHS-EEESSS--TT--EEEEEEETTEEEEEEE-TTSTTSTTCCEEECEESSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcceecCCCCCCccccEEEEEECCceEEEEEEcCCCCccCcccccccccCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999866   55599999


Q ss_pred             hHHHHHhhhcccccCCCCchHHHHHHHhcc-cCCCC
Q 022965          166 NSLRKTWQRNSKRWNKDKPFVENVANLLET-QLPRP  200 (289)
Q Consensus       166 ~~lr~~l~~n~~~Wd~~~~i~~NL~~il~~-~~P~~  200 (289)
                      ++||++|++|+++||+++++++||+++||+ +||+|
T Consensus       256 ~~lr~~~~~n~~~Wd~~~~~~~NL~~il~~~~fP~p  291 (291)
T PF09765_consen  256 NPLREKLNDNLHNWDPDKSLLENLERILEICEFPSP  291 (291)
T ss_dssp             HHHHHHHHHHHHC--TTS-HHHHHHHHCT-SS----
T ss_pred             HHHHHHHhcchhhcCCCCCHHHHHHHHhCcccCCCC
Confidence            999999999999999999999999999999 89986

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=99.86  E-value=7.5e-23  Score=155.12  Aligned_cols=69  Identities=46%  Similarity=1.053  Sum_probs=41.8

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      +.+|+|||++++        +++.+|+.+|+|.+|++.||..||++||++++++|++|+.++|+||||+++|+++++
T Consensus         2 ~~~C~IC~~~~~--------~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~~~   70 (70)
T PF11793_consen    2 ELECGICYSYRL--------DDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWSFS   70 (70)
T ss_dssp             --S-SSS--SS---------TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGGG-
T ss_pred             CCCCCcCCcEec--------CCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEecC
Confidence            468999999986        256789999999999999999999999999999999999999999999999999874

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.27  E-value=2.9e-12  Score=100.78  Aligned_cols=62  Identities=31%  Similarity=0.656  Sum_probs=47.3

Q ss_pred             cccccccccccccchhhccccCCCCCccccc--CCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCD--NSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~--n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ++.||||+..|..     ...+-..|...|.  ..+|+|.||.+||++||.+.. +       .+.||+||+++..|
T Consensus        21 dd~CgICr~~fdg-----~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~-~-------~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   21 DDVCGICRMPFDG-----CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS-S-------KGQCPMCRQPWKFK   84 (85)
T ss_pred             CCceeeEeccccc-----CCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc-C-------CCCCCCcCCeeeeC
Confidence            5689999999841     0123456777773  468999999999999999832 2       58999999998765

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.12  E-value=1.9e-11  Score=83.93  Aligned_cols=43  Identities=35%  Similarity=0.950  Sum_probs=33.1

Q ss_pred             cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCC
Q 022965          211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCS  277 (289)
Q Consensus       211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr  277 (289)
                      +|+||++.+..         +.   .. ...+|||.||..||.+||++           .++||+||
T Consensus         2 ~C~IC~~~~~~---------~~---~~-~~l~C~H~fh~~Ci~~~~~~-----------~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFED---------GE---KV-VKLPCGHVFHRSCIKEWLKR-----------NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHT---------TS---CE-EEETTSEEEEHHHHHHHHHH-----------SSB-TTTH
T ss_pred             CCcCCChhhcC---------CC---eE-EEccCCCeeCHHHHHHHHHh-----------CCcCCccC
Confidence            79999999852         11   11 12559999999999999998           57999997

...

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.02  E-value=1.4e-10  Score=88.50  Aligned_cols=53  Identities=26%  Similarity=0.673  Sum_probs=35.5

Q ss_pred             cccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCC
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCS  277 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr  277 (289)
                      +..|+||++.+...--+-.     .+...|  ..+.|||.||.+||.+||+.           ..+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~-----~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-----------~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQ-----APQDECPIVWGPCGHIFHFHCISQWLKQ-----------NNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHH-----HCTTTS-EEEETTSEEEEHHHHHHHHTT-----------SSB-TTSS
T ss_pred             CCcccccChhhhChhhhhc-----CCccccceEecccCCCEEHHHHHHHHhc-----------CCcCCCCC
Confidence            3459999999842110000     011112  34689999999999999998           67999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=7.4e-11  Score=90.98  Aligned_cols=61  Identities=31%  Similarity=0.659  Sum_probs=46.9

Q ss_pred             ccccccccccccchhhccccCCCCCccccc--CCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCD--NSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~--n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +.||||...|..     -..+-.+|...|.  .+.|.|.||.+||++||.+ +++       .|.||+||+...++
T Consensus        21 e~CGiCRm~Fdg-----~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~-~ts-------q~~CPmcRq~~~~~   83 (84)
T KOG1493|consen   21 ETCGICRMPFDG-----CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNT-PTS-------QGQCPMCRQTWQFK   83 (84)
T ss_pred             CccceEecccCC-----cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcC-ccc-------cccCCcchheeEec
Confidence            489999999831     0012357888884  4799999999999999998 333       59999999988765

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.98  E-value=1.4e-10  Score=121.53  Aligned_cols=60  Identities=28%  Similarity=0.680  Sum_probs=49.2

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      .=++.+||+|||+....       -+...|.+.|  +.|.|.||..|||+|+++-  .       .++||.||..|+.
T Consensus      1465 ~fsG~eECaICYsvL~~-------vdr~lPskrC--~TCknKFH~~CLyKWf~Ss--~-------~s~CPlCRseitf 1524 (1525)
T COG5219        1465 KFSGHEECAICYSVLDM-------VDRSLPSKRC--ATCKNKFHTRCLYKWFASS--A-------RSNCPLCRSEITF 1524 (1525)
T ss_pred             hcCCcchhhHHHHHHHH-------HhccCCcccc--chhhhhhhHHHHHHHHHhc--C-------CCCCCcccccccc
Confidence            34577899999998642       2457899999  8899999999999999982  2       4699999988764

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.95  E-value=4e-10  Score=87.66  Aligned_cols=61  Identities=25%  Similarity=0.514  Sum_probs=47.0

Q ss_pred             ccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ..||||...+...  =.....|..|+..|  ..+.|+|.||.+||+.||.+           .|.||+++++..+.
T Consensus        21 d~CaICRnhim~~--C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-----------k~~CPld~q~w~~~   83 (88)
T COG5194          21 DVCAICRNHIMGT--CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-----------KGVCPLDRQTWVLA   83 (88)
T ss_pred             chhhhhhccccCc--CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-----------CCCCCCCCceeEEe
Confidence            4799999988511  11122344577777  36899999999999999999           89999999987654

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.86  E-value=2e-09  Score=99.31  Aligned_cols=55  Identities=25%  Similarity=0.617  Sum_probs=41.0

Q ss_pred             CcccccccccccccchhhccccCCCCCc-ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTD-YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd-~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      .+.+|+||++.+..         ..+.. .....+.|||.||..||.+|++.           .++||+||.++..
T Consensus       173 ~~~eC~ICle~~~~---------~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-----------~~tCPlCR~~~~~  228 (238)
T PHA02929        173 KDKECAICMEKVYD---------KEIKNMYFGILSNCNHVFCIECIDIWKKE-----------KNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCccCCccccc---------CccccccceecCCCCCcccHHHHHHHHhc-----------CCCCCCCCCEeeE
Confidence            45799999998651         11111 11234789999999999999987           6899999998763

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=4.5e-08  Score=94.88  Aligned_cols=64  Identities=28%  Similarity=0.612  Sum_probs=45.7

Q ss_pred             CCCcccccccccc-cccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          206 NYQQVECGICYAQ-FLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       206 ~~~~~eC~ICy~~-~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ..++..|.||+++ +.++.+.+.......|.    ...|||.||-+||+-|+++           ..+||.||.|+-..+
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pK----rLpCGHilHl~CLknW~ER-----------qQTCPICr~p~ifd~  348 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPK----RLPCGHILHLHCLKNWLER-----------QQTCPICRRPVIFDQ  348 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcc----cccccceeeHHHHHHHHHh-----------ccCCCcccCcccccc
Confidence            3466789999999 44322222222223343    3899999999999999999           689999999965443

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=3.5e-08  Score=95.27  Aligned_cols=48  Identities=33%  Similarity=0.764  Sum_probs=37.7

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      ..|+||++.|..+|            ++ .-+.|+|.||..||..||..   .|       ..||.|++.+
T Consensus       230 ~~CaIClEdY~~Gd------------kl-RiLPC~H~FH~~CIDpWL~~---~r-------~~CPvCK~di  277 (348)
T KOG4628|consen  230 DTCAICLEDYEKGD------------KL-RILPCSHKFHVNCIDPWLTQ---TR-------TFCPVCKRDI  277 (348)
T ss_pred             ceEEEeecccccCC------------ee-eEecCCCchhhccchhhHhh---cC-------ccCCCCCCcC
Confidence            69999999996322            11 23889999999999999988   12       3599999965

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=7.9e-08  Score=91.14  Aligned_cols=53  Identities=30%  Similarity=0.746  Sum_probs=41.5

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      .++..||+||++.+.-+|            + -.-++|.|.||..||.+|+-.-          ...||.||.++.
T Consensus       320 a~~GveCaICms~fiK~d------------~-~~vlPC~H~FH~~Cv~kW~~~y----------~~~CPvCrt~iP  372 (374)
T COG5540         320 ADKGVECAICMSNFIKND------------R-LRVLPCDHRFHVGCVDKWLLGY----------SNKCPVCRTAIP  372 (374)
T ss_pred             cCCCceEEEEhhhhcccc------------e-EEEeccCceechhHHHHHHhhh----------cccCCccCCCCC
Confidence            346689999999985211            1 2338999999999999999852          579999999875

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.40  E-value=2.8e-07  Score=82.66  Aligned_cols=61  Identities=23%  Similarity=0.509  Sum_probs=42.7

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCcccc-----ccccCCCCCCCcccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSY-----DVLFGNCPYCSEPVA  281 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF-----~~i~g~CP~Cr~~i~  281 (289)
                      .+..+|+||++.+.         +   |  +.  +.|||.|...||.+|+....++++..     ..-...||.||++++
T Consensus        16 ~~~~~CpICld~~~---------d---P--Vv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         16 GGDFDCNICLDQVR---------D---P--VV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             CCccCCccCCCcCC---------C---c--EE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            35679999999763         1   2  22  68999999999999997533222211     112468999999987


Q ss_pred             cc
Q 022965          282 VK  283 (289)
Q Consensus       282 ~~  283 (289)
                      ..
T Consensus        80 ~~   81 (193)
T PLN03208         80 EA   81 (193)
T ss_pred             hh
Confidence            54

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.36  E-value=3.3e-07  Score=60.59  Aligned_cols=45  Identities=36%  Similarity=0.919  Sum_probs=34.0

Q ss_pred             cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      +|+||++.+.   +            ......|||.||..|+.+|++.   .       ...||.|++.+
T Consensus         1 ~C~iC~~~~~---~------------~~~~~~C~H~~c~~C~~~~~~~---~-------~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR---E------------PVVLLPCGHVFCRSCIDKWLKS---G-------KNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh---C------------ceEecCCCChhcHHHHHHHHHh---C-------cCCCCCCCCcC
Confidence            5999998762   0            1112569999999999999986   1       46899999864

>PHA02926 zinc finger-like protein; Provisional

Probab=98.29  E-value=7e-07  Score=81.70  Aligned_cols=62  Identities=27%  Similarity=0.550  Sum_probs=40.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      .+.+||||++....-  ...  +....   -..+.|+|.|...||.+|-++-.+     ..+...||.||..+.
T Consensus       169 kE~eCgICmE~I~eK--~~~--~eRrF---GIL~~CnHsFCl~CIr~Wr~~r~~-----~~~~rsCPiCR~~f~  230 (242)
T PHA02926        169 KEKECGICYEVVYSK--RLE--NDRYF---GLLDSCNHIFCITCINIWHRTRRE-----TGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCCccCccccccc--ccc--ccccc---cccCCCCchHHHHHHHHHHHhccc-----cCcCCcCCCCcceee
Confidence            457999999976410  000  00001   124789999999999999986221     122568999999865

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.15  E-value=1.3e-06  Score=61.46  Aligned_cols=46  Identities=28%  Similarity=0.671  Sum_probs=36.0

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      +..|.||++...              +.  ...+|||. |-..|+.+|+++           ...||+||++|+
T Consensus         2 ~~~C~iC~~~~~--------------~~--~~~pCgH~~~C~~C~~~~~~~-----------~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPR--------------DV--VLLPCGHLCFCEECAERLLKR-----------KKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBS--------------SE--EEETTCEEEEEHHHHHHHHHT-----------TSBBTTTTBB-S
T ss_pred             cCCCccCCccCC--------------ce--EEeCCCChHHHHHHhHHhccc-----------CCCCCcCChhhc
Confidence            458999999742              11  23689999 999999999996           789999999985

...

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=1.4e-06  Score=88.69  Aligned_cols=53  Identities=23%  Similarity=0.573  Sum_probs=40.5

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      ......|.||.+....+       ....|    ....|||.||..||++||++           ..+||.||..+
T Consensus       288 ~~~~~~C~IC~e~l~~~-------~~~~~----~rL~C~Hifh~~CL~~W~er-----------~qtCP~CR~~~  340 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSG-------HNITP----KRLPCGHIFHDSCLRSWFER-----------QQTCPTCRTVL  340 (543)
T ss_pred             hhcCCeeeeechhhccc-------ccccc----ceeecccchHHHHHHHHHHH-----------hCcCCcchhhh
Confidence            34578999999987511       01112    23789999999999999999           68999999844

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=1.2e-06  Score=71.47  Aligned_cols=61  Identities=23%  Similarity=0.563  Sum_probs=43.0

Q ss_pred             cccccccccccccchhhcccc-CCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          209 QVECGICYAQFLPIDEELGAK-SGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~-~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      ...|+||..++..  .=.... +...+..-|  ..+-|+|.||-+||..||++           ...||+|.++..+
T Consensus        46 vDnCAICRnHIMd--~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt-----------r~vCPLdn~eW~~  109 (114)
T KOG2930|consen   46 VDNCAICRNHIMD--LCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT-----------RNVCPLDNKEWVF  109 (114)
T ss_pred             echhHHHHHHHHH--HHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh-----------cCcCCCcCcceeE
Confidence            4579999998752  100000 112234445  46889999999999999999           7899999987654

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.04  E-value=3e-06  Score=56.71  Aligned_cols=39  Identities=26%  Similarity=0.767  Sum_probs=30.0

Q ss_pred             ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965          212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC  276 (289)
Q Consensus       212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C  276 (289)
                      |+||++.+.         +   |- +  ..+|||.|...|+.+|++.           ...||.|
T Consensus         1 C~iC~~~~~---------~---~~-~--~~~CGH~fC~~C~~~~~~~-----------~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELR---------D---PV-V--VTPCGHSFCKECIEKYLEK-----------NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-S---------S---EE-E--ECTTSEEEEHHHHHHHHHC-----------TSB-TTT
T ss_pred             CCCCCCccc---------C---cC-E--ECCCCCchhHHHHHHHHHC-----------cCCCcCC
Confidence            899999763         1   21 1  2789999999999999998           5799998

>smart00184 RING Ring finger

Probab=97.97  E-value=5.8e-06  Score=52.60  Aligned_cols=26  Identities=35%  Similarity=1.017  Sum_probs=22.2

Q ss_pred             CCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965          241 SSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC  276 (289)
Q Consensus       241 ~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C  276 (289)
                      ..|||.||..|+.+|++.   .       .+.||.|
T Consensus        14 ~~C~H~~c~~C~~~~~~~---~-------~~~CP~C   39 (39)
T smart00184       14 LPCGHTFCRSCIRKWLKS---G-------NNTCPIC   39 (39)
T ss_pred             ecCCChHHHHHHHHHHHh---C-------cCCCCCC
Confidence            679999999999999982   1       4689987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=3.9e-06  Score=81.94  Aligned_cols=53  Identities=36%  Similarity=0.825  Sum_probs=40.4

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      ..++|.|| +.+.+.+.+++    .       -..|||.||..||..|++.-|++|        .||.|+=.+
T Consensus         3 i~A~C~Ic-~d~~p~~~~l~----~-------i~~cGhifh~~cl~qwfe~~Ps~R--------~cpic~ik~   55 (465)
T KOG0827|consen    3 IMAECHIC-IDGRPNDHELG----P-------IGTCGHIFHTTCLTQWFEGDPSNR--------GCPICQIKL   55 (465)
T ss_pred             ccceeeEe-ccCCccccccc----c-------ccchhhHHHHHHHHHHHccCCccC--------CCCceeecc
Confidence            34689999 65555555443    1       267999999999999999999764        899999433

>smart00504 Ubox Modified RING finger domain

Probab=97.94  E-value=9.5e-06  Score=58.66  Aligned_cols=48  Identities=17%  Similarity=0.359  Sum_probs=39.2

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ..|+||...+.         +   |  +.  ..|||.|-..||.+|++.           .+.||+|+++++.+.
T Consensus         2 ~~Cpi~~~~~~---------~---P--v~--~~~G~v~~~~~i~~~~~~-----------~~~cP~~~~~~~~~~   49 (63)
T smart00504        2 FLCPISLEVMK---------D---P--VI--LPSGQTYERRAIEKWLLS-----------HGTDPVTGQPLTHED   49 (63)
T ss_pred             cCCcCCCCcCC---------C---C--EE--CCCCCEEeHHHHHHHHHH-----------CCCCCCCcCCCChhh
Confidence            35999999864         1   3  33  689999999999999988           589999999986543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=9.4e-06  Score=76.57  Aligned_cols=49  Identities=20%  Similarity=0.605  Sum_probs=41.0

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +....|.||++.+.              +-.|  +.|||.|==.||.+|+..           ..+||.||++.+-
T Consensus       237 ~a~~kC~LCLe~~~--------------~pSa--TpCGHiFCWsCI~~w~~e-----------k~eCPlCR~~~~p  285 (293)
T KOG0317|consen  237 EATRKCSLCLENRS--------------NPSA--TPCGHIFCWSCILEWCSE-----------KAECPLCREKFQP  285 (293)
T ss_pred             CCCCceEEEecCCC--------------CCCc--CcCcchHHHHHHHHHHcc-----------ccCCCcccccCCC
Confidence            35578999999874              2356  899999999999999998           6799999998653

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=1e-05  Score=71.80  Aligned_cols=53  Identities=25%  Similarity=0.543  Sum_probs=43.4

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ++..-|+||+..+.          ..+|    ..++|||.|=..||.+-|+.           ...||.|+++|+.|.
T Consensus       129 ~~~~~CPiCl~~~s----------ek~~----vsTkCGHvFC~~Cik~alk~-----------~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  129 EGTYKCPICLDSVS----------EKVP----VSTKCGHVFCSQCIKDALKN-----------TNKCPTCRKKITHKQ  181 (187)
T ss_pred             ccccCCCceecchh----------hccc----cccccchhHHHHHHHHHHHh-----------CCCCCCcccccchhh
Confidence            45578999999874          1333    34899999999999999998           689999999888764

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=8.7e-06  Score=81.58  Aligned_cols=62  Identities=23%  Similarity=0.446  Sum_probs=40.1

Q ss_pred             Cccccccccccccc---chhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          208 QQVECGICYAQFLP---IDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       208 ~~~eC~ICy~~~l~---~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      ....|.||++.+-=   +.+...+  .-.+.+.-.-++|.|.||..||..|+.+-          +-.||.||.++.
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~--~~~~~~nYm~tPC~HifH~~CL~~WMd~y----------kl~CPvCR~pLP  634 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVA--SMMVRRNYMLTPCHHIFHRQCLLQWMDTY----------KLICPVCRCPLP  634 (636)
T ss_pred             ccccceEeccccceeeccCcchhh--hhhhhccccccchHHHHHHHHHHHHHhhh----------cccCCccCCCCC
Confidence            45789999997531   1111000  00111112336999999999999999961          459999999975

>TIGR00599 rad18 DNA repair protein rad18

Probab=97.69  E-value=3.6e-05  Score=76.01  Aligned_cols=49  Identities=29%  Similarity=0.549  Sum_probs=39.9

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +....|+||...+.            .|-    -..|||.|...||.+|+..           .+.||.|+.++..
T Consensus        24 e~~l~C~IC~d~~~------------~Pv----itpCgH~FCs~CI~~~l~~-----------~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFD------------VPV----LTSCSHTFCSLCIRRCLSN-----------QPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhh------------Ccc----CCCCCCchhHHHHHHHHhC-----------CCCCCCCCCcccc
Confidence            45679999999874            121    2789999999999999987           5789999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=2.5e-05  Score=71.71  Aligned_cols=56  Identities=23%  Similarity=0.564  Sum_probs=43.5

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      +...-+|.|||+--.            =|-.    +-|||.|==.|||+||..-+++        ..||.|+..|+.+..
T Consensus        44 ~~~~FdCNICLd~ak------------dPVv----TlCGHLFCWpClyqWl~~~~~~--------~~cPVCK~~Vs~~~v   99 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAK------------DPVV----TLCGHLFCWPCLYQWLQTRPNS--------KECPVCKAEVSIDTV   99 (230)
T ss_pred             CCCceeeeeeccccC------------CCEE----eecccceehHHHHHHHhhcCCC--------eeCCccccccccceE
Confidence            456789999998632            1433    5599999999999999985543        589999999887643

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.63  E-value=3.6e-05  Score=51.49  Aligned_cols=41  Identities=32%  Similarity=0.762  Sum_probs=31.7

Q ss_pred             ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965          212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC  276 (289)
Q Consensus       212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C  276 (289)
                      |+||++.+..            |.   ....|||.|+..||.+|+++  ..       ...||.|
T Consensus         1 C~iC~~~~~~------------~~---~~~~C~H~fC~~C~~~~~~~--~~-------~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED------------PV---ILLPCGHSFCRDCLRKWLEN--SG-------SVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS------------EE---EETTTSEEEEHHHHHHHHHH--TS-------SSBTTTT
T ss_pred             CCcCCccccC------------CC---EEecCCCcchHHHHHHHHHh--cC-------CccCCcC
Confidence            8999998641            11   23899999999999999996  11       4579988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.58  E-value=5e-05  Score=52.22  Aligned_cols=44  Identities=25%  Similarity=0.662  Sum_probs=33.1

Q ss_pred             cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965          211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE  278 (289)
Q Consensus       211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~  278 (289)
                      +|+||+..+.+         ...|    ..+.|||.|...||..+...           ...||.|++
T Consensus         1 ~C~~C~~~~~~---------~~~~----~l~~CgH~~C~~C~~~~~~~-----------~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSE---------ERRP----RLTSCGHIFCEKCLKKLKGK-----------SVKCPICRK   44 (44)
T ss_pred             CCcCcCccccC---------CCCe----EEcccCCHHHHHHHHhhcCC-----------CCCCcCCCC
Confidence            59999999831         1112    34899999999999998822           479999985

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=2.1e-05  Score=73.87  Aligned_cols=62  Identities=29%  Similarity=0.586  Sum_probs=43.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      .+..|+||-..+....||    +|-+-+.  -...|+|.||.-||.-|---  +.       ..+||||++.+..+-
T Consensus       223 ~d~vCaVCg~~~~~s~~e----egvient--y~LsCnHvFHEfCIrGWciv--GK-------kqtCPYCKekVdl~r  284 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDE----EGVIENT--YKLSCNHVFHEFCIRGWCIV--GK-------KQTCPYCKEKVDLKR  284 (328)
T ss_pred             CcchhHhhcchheeecch----hhhhhhh--eeeecccchHHHhhhhheee--cC-------CCCCchHHHHhhHhh
Confidence            456899999887533332    3433211  24789999999999999764  22       469999999887653

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.22  E-value=0.00022  Score=69.06  Aligned_cols=47  Identities=32%  Similarity=0.759  Sum_probs=39.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      ....|+||++||.            +|-.    ..|||.|-+-||.+.|..           +..||.|+.+++
T Consensus        22 ~lLRC~IC~eyf~------------ip~i----tpCsHtfCSlCIR~~L~~-----------~p~CP~C~~~~~   68 (442)
T KOG0287|consen   22 DLLRCGICFEYFN------------IPMI----TPCSHTFCSLCIRKFLSY-----------KPQCPTCCVTVT   68 (442)
T ss_pred             HHHHHhHHHHHhc------------Ccee----ccccchHHHHHHHHHhcc-----------CCCCCceecccc
Confidence            4568999999984            4533    679999999999999998           789999998764

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.18  E-value=0.0003  Score=49.92  Aligned_cols=24  Identities=29%  Similarity=0.731  Sum_probs=19.5

Q ss_pred             CcchhhHHHHHHhhhccCccccccccCCCCCCC
Q 022965          245 KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCS  277 (289)
Q Consensus       245 h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr  277 (289)
                      +.+|..||.+|+..-.         ...||.|.
T Consensus        26 ~~vH~~Cl~~W~~~~~---------~~~C~iC~   49 (49)
T smart00744       26 KYVHQECLERWINESG---------NKTCEICK   49 (49)
T ss_pred             hHHHHHHHHHHHHHcC---------CCcCCCCC
Confidence            8999999999998711         23899985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.14  E-value=0.00048  Score=65.75  Aligned_cols=127  Identities=23%  Similarity=0.446  Sum_probs=75.1

Q ss_pred             eEEEEEEeCCCCCCCCceEEecC----chhhhHHHHHhhhcccccCCCCchH-HHHHHHhcccCCCCCCCcCCCCccccc
Q 022965          139 CIIMLSIHIDDPSSLPECRFMGS----DPMVNSLRKTWQRNSKRWNKDKPFV-ENVANLLETQLPRPPEHENNYQQVECG  213 (289)
Q Consensus       139 ~sl~i~vdp~~P~~lP~~~flG~----~~~v~~lr~~l~~n~~~Wd~~~~i~-~NL~~il~~~~P~~~~~~~~~~~~eC~  213 (289)
                      |.|.++|.+-.|...|.+.+.-|    |..+..++..++..++.=. +..|+ +=++..-+  |-.    ++.-....|.
T Consensus        47 vtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~~~~~~iikq~~-g~pii~~lie~~~e--~LT----~nn~p~gqCv  119 (368)
T KOG4445|consen   47 VTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQRQIQEIIKQNS-GMPIICQLIEHCSE--FLT----ENNHPNGQCV  119 (368)
T ss_pred             EEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHH--Hcc----cCCCCCCceE
Confidence            35566778889999999988765    4556666776766554322 23332 11121111  111    1222346899


Q ss_pred             ccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccC-ccccc-----------cccCCCCCCCcccc
Q 022965          214 ICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTT-RQSYD-----------VLFGNCPYCSEPVA  281 (289)
Q Consensus       214 ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~-r~sF~-----------~i~g~CP~Cr~~i~  281 (289)
                      ||+--|-         ++  |..+  -+.|-|.||.+||...|..+.+. |+-|.           .....||.||.+|.
T Consensus       120 ICLygfa---------~~--~~ft--~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  120 ICLYGFA---------SS--PAFT--VTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             EEEEeec---------CC--Ccee--eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            9998774         22  2122  27899999999998877543321 22221           12456999999987


Q ss_pred             cccc
Q 022965          282 VKIS  285 (289)
Q Consensus       282 ~~~~  285 (289)
                      ...+
T Consensus       187 ~e~~  190 (368)
T KOG4445|consen  187 IEEN  190 (368)
T ss_pred             cccc
Confidence            6543

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.00072  Score=68.27  Aligned_cols=53  Identities=19%  Similarity=0.519  Sum_probs=41.6

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ...|+||+++-.            +|-    .+.|||.|=-.||...+..- +-++     ++.||+|+..|..|
T Consensus       186 ~~~CPICL~~~~------------~p~----~t~CGHiFC~~CiLqy~~~s-~~~~-----~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPS------------VPV----RTNCGHIFCGPCILQYWNYS-AIKG-----PCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCC------------ccc----ccccCceeeHHHHHHHHhhh-cccC-----CccCCchhhhcccc
Confidence            678999999743            332    36699999999999988873 2344     79999999998874

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=96.78  E-value=0.0011  Score=45.48  Aligned_cols=42  Identities=26%  Similarity=0.602  Sum_probs=28.5

Q ss_pred             ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965          212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC  276 (289)
Q Consensus       212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C  276 (289)
                      |+||++++..            |    ....|||.|=..||..|.+...+.       .-.||.|
T Consensus         1 CpiC~~~~~~------------P----v~l~CGH~FC~~Cl~~~~~~~~~~-------~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD------------P----VSLPCGHSFCRSCLERLWKEPSGS-------GFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS------------E----EE-SSSSEEEHHHHHHHHCCSSSS-------T---SSS
T ss_pred             CCccchhhCC------------c----cccCCcCHHHHHHHHHHHHccCCc-------CCCCcCC
Confidence            8999999851            3    238999999999999999873322       1479987

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.47  E-value=0.00092  Score=66.66  Aligned_cols=49  Identities=29%  Similarity=0.668  Sum_probs=35.8

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      +...|++|++-+-   ++   .+|-+|      .-|.|.||..||.+|=.+             +||.||.-.+
T Consensus       174 ELPTCpVCLERMD---~s---~~gi~t------~~c~Hsfh~~cl~~w~~~-------------scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMD---SS---TTGILT------ILCNHSFHCSCLMKWWDS-------------SCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcC---cc---ccceee------eecccccchHHHhhcccC-------------cChhhhhhcC
Confidence            4568999999762   21   133333      568999999999999776             8999986433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.002  Score=63.72  Aligned_cols=52  Identities=27%  Similarity=0.586  Sum_probs=39.7

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccc-cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTC-DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP  279 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C-~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~  279 (289)
                      +....|+||++.+.            .|...| ..++|||.|.+.||.+||-.  .+       .-.||.|+.+
T Consensus         2 d~g~tcpiclds~~------------~~g~hr~vsl~cghlFgs~cie~wl~k--~~-------~~~cp~c~~k   54 (463)
T KOG1645|consen    2 DCGTTCPICLDSYT------------TAGNHRIVSLQCGHLFGSQCIEKWLGK--KT-------KMQCPLCSGK   54 (463)
T ss_pred             CccccCceeeeeee------------ecCceEEeeecccccccHHHHHHHHhh--hh-------hhhCcccCCh
Confidence            35578999999874            233344 56999999999999999942  11       5699999875

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.008  Score=58.61  Aligned_cols=64  Identities=22%  Similarity=0.486  Sum_probs=41.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .+.+||||++.....-   + ..+..    =.++.|.|.|=..||..|=...    |+=..+.-.||.||.+...-
T Consensus       160 ~~k~CGICme~i~ek~---~-~~~rf----gilpnC~H~~Cl~Cir~wr~~~----q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  160 SEKECGICMETINEKA---A-SERRF----GILPNCNHSFCLNCIRKWRQAT----QFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             ccccceehhhhccccc---h-hhhhc----ccCCCcchhhhhcHhHhhhhhh----ccccccccCCCcccCccccc
Confidence            3568999999875110   0 00000    0237899999999999998652    22223356999999986543

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.78  E-value=0.0063  Score=57.20  Aligned_cols=50  Identities=26%  Similarity=0.650  Sum_probs=39.4

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHH-HHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGD-WLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~e-WL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .+-.|.||++...              .-+|  ..|||.|=-.||.- |-..     +     ++-||.||+....+
T Consensus       214 ~d~kC~lC~e~~~--------------~ps~--t~CgHlFC~~Cl~~~~t~~-----k-----~~~CplCRak~~pk  264 (271)
T COG5574         214 ADYKCFLCLEEPE--------------VPSC--TPCGHLFCLSCLLISWTKK-----K-----YEFCPLCRAKVYPK  264 (271)
T ss_pred             cccceeeeecccC--------------Cccc--ccccchhhHHHHHHHHHhh-----c-----cccCchhhhhccch
Confidence            5668999998753              2356  89999999999999 8765     1     56799999987654

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.75  E-value=0.0059  Score=68.14  Aligned_cols=62  Identities=24%  Similarity=0.542  Sum_probs=47.0

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhh-hccCccccccccCCCCCCCcccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS-ITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~-l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      +.|.+..|-||+.+.+          +..|   |...-|+|.||-.|...=|+. --+.|.-|+  |-+||.|.++|.
T Consensus      3482 kQD~DDmCmICFTE~L----------~AAP---~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~--FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEAL----------SAAP---AIQLDCSHIFHLQCCRRVLENRWLGPRITFG--FISCPICKNKIN 3544 (3738)
T ss_pred             hcccCceEEEEehhhh----------CCCc---ceecCCccchhHHHHHHHHHhcccCCeeEEe--eeecccccchhh
Confidence            4467789999999977          2334   556899999999999877753 234577776  458999999985

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=95.69  E-value=0.0088  Score=45.32  Aligned_cols=50  Identities=14%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ...|.||.+.+..            |  +-  ..|||.|-+.||.+||+..          .+.||.|+++++...
T Consensus         4 ~f~CpIt~~lM~d------------P--Vi--~~~G~tyer~~I~~~l~~~----------~~~~P~t~~~l~~~~   53 (73)
T PF04564_consen    4 EFLCPITGELMRD------------P--VI--LPSGHTYERSAIERWLEQN----------GGTDPFTRQPLSESD   53 (73)
T ss_dssp             GGB-TTTSSB-SS------------E--EE--ETTSEEEEHHHHHHHHCTT----------SSB-TTT-SB-SGGG
T ss_pred             ccCCcCcCcHhhC------------c--ee--CCcCCEEcHHHHHHHHHcC----------CCCCCCCCCcCCccc
Confidence            3579999998741            2  22  5789999999999999971          689999999988753

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=95.62  E-value=0.072  Score=44.63  Aligned_cols=82  Identities=18%  Similarity=0.391  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhcccee----eee-cCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc--c----
Q 022965           17 RSVYSEIEEVGWEHL----VRL-SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN--L----   80 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l----~~i-d~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l----   80 (289)
                      ++|.+|+.++.-+..    +.. +.++....+.+.-.     .|....++|.+|.+||.+||.+...-+ .+.  +    
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~-i~HpnV~~~G   80 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK-IYHPNVDENG   80 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC-cccCCCCCCC
Confidence            578888888754322    223 34788888877743     356788899999999999999987322 111  1    


Q ss_pred             ---------c-cCccccHHHHHHHHHHHH
Q 022965           81 ---------K-WSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 ---------~-w~~~s~L~~i~~qF~~~l   99 (289)
                               . |++..+|.+|+...+..+
T Consensus        81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l  109 (141)
T cd00195          81 KICLSILKTHGWSPAYTLRTVLLSLQSLL  109 (141)
T ss_pred             CCchhhcCCCCcCCcCcHHHHHHHHHHHH
Confidence                     3 888778888877665554

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=95.62  E-value=0.0067  Score=58.00  Aligned_cols=47  Identities=28%  Similarity=0.683  Sum_probs=39.4

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      |....|-||-.++.            +|   | .+.|||.|-+-||..-|.+           +..||.||.+.
T Consensus        23 Ds~lrC~IC~~~i~------------ip---~-~TtCgHtFCslCIR~hL~~-----------qp~CP~Cr~~~   69 (391)
T COG5432          23 DSMLRCRICDCRIS------------IP---C-ETTCGHTFCSLCIRRHLGT-----------QPFCPVCREDP   69 (391)
T ss_pred             hhHHHhhhhhheee------------cc---e-ecccccchhHHHHHHHhcC-----------CCCCccccccH
Confidence            35568999999874            34   2 3789999999999999999           78999999864

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=95.37  E-value=0.015  Score=56.03  Aligned_cols=52  Identities=19%  Similarity=0.439  Sum_probs=36.1

Q ss_pred             ccccccccccccchhhccccCCCCCcccc-cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTC-DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C-~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ..|+||.+...           --|+..- .+ .|||.|=..||...+...          .+.||.|+.++.-+
T Consensus         4 ~~CP~Ck~~~y-----------~np~~kl~i~-~CGH~~C~sCv~~l~~~~----------~~~CP~C~~~lrk~   56 (309)
T TIGR00570         4 QGCPRCKTTKY-----------RNPSLKLMVN-VCGHTLCESCVDLLFVRG----------SGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCcCCCCCc-----------cCcccccccC-CCCCcccHHHHHHHhcCC----------CCCCCCCCCccchh
Confidence            47999999532           0133221 23 799999999999966431          46999999987543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.35  E-value=0.0061  Score=60.25  Aligned_cols=52  Identities=27%  Similarity=0.561  Sum_probs=37.1

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      .+.-||.|-+-+.--++            .-.-.+|.|.||..|+++.|....         -.+||-||+-+
T Consensus       364 ~~L~Cg~CGe~~Glk~e------------~LqALpCsHIfH~rCl~e~L~~n~---------~rsCP~Crklr  415 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNE------------RLQALPCSHIFHLRCLQEILENNG---------TRSCPNCRKLR  415 (518)
T ss_pred             HhhhhhhhhhhhcCCcc------------cccccchhHHHHHHHHHHHHHhCC---------CCCCccHHHHH
Confidence            44579999886642111            123489999999999999997622         35999999544

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=95.26  E-value=0.15  Score=50.08  Aligned_cols=141  Identities=14%  Similarity=0.250  Sum_probs=77.5

Q ss_pred             EEEEEEeCCCCCCCCceEEecCchhhhHHHHHhhhccccc---CCCCchHHHHHHHhc--ccCCCCCC-CcCCCCccccc
Q 022965          140 IIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRW---NKDKPFVENVANLLE--TQLPRPPE-HENNYQQVECG  213 (289)
Q Consensus       140 sl~i~vdp~~P~~lP~~~flG~~~~v~~lr~~l~~n~~~W---d~~~~i~~NL~~il~--~~~P~~~~-~~~~~~~~eC~  213 (289)
                      +|.|+|.+.+|.. +...+-=....-..||++|..-+..=   ....|+.+-+...|.  ++.-.+-. .++.++.+.|=
T Consensus       197 ~i~I~V~~~~~~v-~~F~Irlns~~y~~L~~kL~~PI~~~~ni~i~~tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~Ci  275 (358)
T PF10272_consen  197 FITIRVKSTRPGV-KPFTIRLNSSEYRDLREKLRAPIRIARNIVIHQTLSDRFVEAFKEQVEQNPRYSYPESGQELEPCI  275 (358)
T ss_pred             EEEEEEEeCCCCC-cceEEEEcHHHHHHHHHHhhCccccCCCceECCCHHHHHHHHHHHHHHhCCccccCCCccccCCcc
Confidence            5667777777763 34444335567788999997754322   223444443333332  11111111 12334556788


Q ss_pred             ccccccccc-------hhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhcc--CccccccccCCCCCCCccccc
Q 022965          214 ICYAQFLPI-------DEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITT--TRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       214 ICy~~~l~~-------d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~--~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      =|+..--..       +++ ..+.+..+..-|.+-.|.=..=..|+-+|+.+-.+  -|-..-.....||.||+++-+
T Consensus       276 gC~~~~~~vkl~k~C~~~~-~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  276 GCMQAQPNVKLVKRCADEE-QEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccccCCCCcEEEeccCCcc-cCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            888764210       111 01112233446777788888899999999986211  111233457899999998643

They are purported to be transmembrane protein-precursors but their function is unknown.

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.26  E-value=0.005  Score=52.59  Aligned_cols=52  Identities=27%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             HHHHhcccCCCCCCCcCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHH
Q 022965          189 VANLLETQLPRPPEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDW  255 (289)
Q Consensus       189 L~~il~~~~P~~~~~~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eW  255 (289)
                      |.+++.-.+|+.        ..||+||++.+..       .+|.++-..-....=.|.||..|+.+|
T Consensus        14 l~~lf~~~w~~~--------~~EC~IC~~~I~~-------~~GvV~vt~~g~lnLEkmfc~~C~~rw   65 (134)
T PF05883_consen   14 LERLFNDQWPRC--------TVECQICFDRIDN-------NDGVVYVTDGGTLNLEKMFCADCDKRW   65 (134)
T ss_pred             HHHHHHHHcccc--------Ceeehhhhhhhhc-------CCCEEEEecCCeehHHHHHHHHHHHHH
Confidence            455665556653        4689999999852       134443221122333679999999999

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=0.0087  Score=44.00  Aligned_cols=48  Identities=29%  Similarity=0.638  Sum_probs=30.3

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcc-hhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAF-HSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~F-H~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +.||.|||+.-  .|.-              .-.|||.. -.+|=.+-++.          .+|.||.||.||.-
T Consensus         7 ~dECTICye~p--vdsV--------------lYtCGHMCmCy~Cg~rl~~~----------~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    7 SDECTICYEHP--VDSV--------------LYTCGHMCMCYACGLRLKKA----------LHGCCPICRAPIKD   55 (62)
T ss_pred             ccceeeeccCc--chHH--------------HHHcchHHhHHHHHHHHHHc----------cCCcCcchhhHHHH
Confidence            36899999973  2211              24577753 34554443343          18999999999853

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.15  E-value=0.013  Score=62.38  Aligned_cols=56  Identities=32%  Similarity=0.667  Sum_probs=43.4

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE  278 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~  278 (289)
                      ....+|.|||+.+.+          ..|.-.|  ..|=|.||-.||.+|-++...+++    ..-.||+|..
T Consensus       189 ~~~yeCmIC~e~I~~----------t~~~WSC--~sCYhVFHl~CI~~WArs~ek~~~----~~WrCP~Cqs  244 (950)
T KOG1952|consen  189 NRKYECMICTERIKR----------TAPVWSC--KSCYHVFHLNCIKKWARSSEKTGQ----DGWRCPACQS  244 (950)
T ss_pred             cCceEEEEeeeeccc----------cCCceec--chhhhhhhHHHHHHHHHHhhhccC----ccccCCcccc
Confidence            356799999998742          4477889  569999999999999998444333    2568999993

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=94.94  E-value=0.011  Score=44.63  Aligned_cols=44  Identities=30%  Similarity=0.832  Sum_probs=20.3

Q ss_pred             cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      -|+||.+.+.            .|  +| ...|+|.|=+.|+.+=+             ...||.|..|-.+
T Consensus         9 rCs~C~~~l~------------~p--v~-l~~CeH~fCs~Ci~~~~-------------~~~CPvC~~Paw~   52 (65)
T PF14835_consen    9 RCSICFDILK------------EP--VC-LGGCEHIFCSSCIRDCI-------------GSECPVCHTPAWI   52 (65)
T ss_dssp             S-SSS-S--S------------S---B----SSS--B-TTTGGGGT-------------TTB-SSS--B-S-
T ss_pred             CCcHHHHHhc------------CC--ce-eccCccHHHHHHhHHhc-------------CCCCCCcCChHHH
Confidence            6999999863            12  34 47899999999995522             2369999998643

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=94.84  E-value=0.021  Score=39.51  Aligned_cols=43  Identities=26%  Similarity=0.729  Sum_probs=24.5

Q ss_pred             ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965          212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC  276 (289)
Q Consensus       212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C  276 (289)
                      |.+|.+...             -++.|.|..|+-.+|..|+..++++..         ...||-|
T Consensus         1 C~~C~~iv~-------------~G~~C~~~~C~~r~H~~C~~~y~r~~~---------~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVT-------------QGQRCSNRDCNVRLHDDCFKKYFRHRS---------NPKCPNC   43 (43)
T ss_dssp             -TTT-SB-S-------------SSEE-SS--S--EE-HHHHHHHTTT-S---------S-B-TTT
T ss_pred             CcccchhHe-------------eeccCCCCccCchHHHHHHHHHHhcCC---------CCCCcCC
Confidence            667777654             356899999999999999999999821         2369987

; PDB: 3NW0_A 2CT0_A.

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=94.51  E-value=0.4  Score=41.37  Aligned_cols=85  Identities=16%  Similarity=0.290  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC-c-------
Q 022965           16 SRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY-I-------   77 (289)
Q Consensus        16 y~~l~~Ei~~igw~-----~l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~-~-------   77 (289)
                      -++|.+|+.+|.-+     .+.-.+.++...++.+.-.     .|....++|.+|.+||..||.+..-=++ .       
T Consensus         4 ~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G   83 (152)
T PTZ00390          4 SKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG   83 (152)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCC
Confidence            36889999988533     2233456788888888843     3578899999999999999987643221 0       


Q ss_pred             -c-----ccccCccccHHHHHHHHHHHHH
Q 022965           78 -F-----NLKWSRKSRLKDLLQQFREHLE  100 (289)
Q Consensus        78 -f-----~l~w~~~s~L~~i~~qF~~~le  100 (289)
                       +     .=.|++..++.+|+..++..|.
T Consensus        84 ~iCl~iL~~~W~p~~ti~~iL~~i~~ll~  112 (152)
T PTZ00390         84 RICLDILKDKWSPALQIRTVLLSIQALLS  112 (152)
T ss_pred             eEECccCcccCCCCCcHHHHHHHHHHHHh
Confidence             0     1159998888888776666653

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=94.49  E-value=0.45  Score=40.78  Aligned_cols=84  Identities=19%  Similarity=0.268  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhccce-----eeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC-ccc------
Q 022965           17 RSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY-IFN------   79 (289)
Q Consensus        17 ~~l~~Ei~~igw~~-----l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~-~f~------   79 (289)
                      ++|.+|+.++--+.     +.-.+.++....+.+.-.     .|....++|.+|.+||..||.+..--++ ..+      
T Consensus         4 ~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~   83 (147)
T PLN00172          4 KRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGS   83 (147)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCE
Confidence            58889999985332     222345788888887733     3468889999999999999998754432 001      


Q ss_pred             -------cccCccccHHHHHHHHHHHHH
Q 022965           80 -------LKWSRKSRLKDLLQQFREHLE  100 (289)
Q Consensus        80 -------l~w~~~s~L~~i~~qF~~~le  100 (289)
                             -.|++..+|.+|+...+..|.
T Consensus        84 iCl~il~~~W~p~~ti~~il~~i~~ll~  111 (147)
T PLN00172         84 ICLDILRDQWSPALTVSKVLLSISSLLT  111 (147)
T ss_pred             EEcccCcCCCCCcCcHHHHHHHHHHHHh
Confidence                   159998888888776665553

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=94.48  E-value=0.028  Score=38.98  Aligned_cols=34  Identities=24%  Similarity=0.503  Sum_probs=19.8

Q ss_pred             ccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhh
Q 022965          212 CGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRS  258 (289)
Q Consensus       212 C~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~  258 (289)
                      |.||.+ +.  +      +...|-.    +.|||.|=..||.+++++
T Consensus         1 CpIc~e-~~--~------~~n~P~~----L~CGH~~c~~cl~~l~~~   34 (43)
T PF13445_consen    1 CPICKE-FS--T------EENPPMV----LPCGHVFCKDCLQKLSKK   34 (43)
T ss_dssp             -TTT-------T------TSS-EEE-----SSS-EEEHHHHHHHHHH
T ss_pred             CCcccc-cc--C------CCCCCEE----EeCccHHHHHHHHHHHhc
Confidence            899999 64  1      1223432    669999999999999996

>PHA02862 5L protein; Provisional

Probab=94.36  E-value=0.044  Score=47.57  Aligned_cols=55  Identities=22%  Similarity=0.448  Sum_probs=36.5

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      ..|=||++.-.   +      .   ..-|.=.--.+.-|+.||.+|+..   ++      ...||.|+.+...+..
T Consensus         3 diCWIC~~~~~---e------~---~~PC~C~GS~K~VHq~CL~~WIn~---S~------k~~CeLCkteY~Ik~~   57 (156)
T PHA02862          3 DICWICNDVCD---E------R---NNFCGCNEEYKVVHIKCMQLWINY---SK------KKECNLCKTKYNIKKT   57 (156)
T ss_pred             CEEEEecCcCC---C------C---cccccccCcchhHHHHHHHHHHhc---CC------CcCccCCCCeEEEEEc
Confidence            47999998621   1      1   122411111678899999999975   32      4699999998776543

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=94.28  E-value=0.22  Score=41.87  Aligned_cols=82  Identities=18%  Similarity=0.324  Sum_probs=57.5

Q ss_pred             HHHHHHHHhcccee----eee--cCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----------
Q 022965           18 SVYSEIEEVGWEHL----VRL--SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (289)
Q Consensus        18 ~l~~Ei~~igw~~l----~~i--d~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----------   76 (289)
                      +|.+|+.++--+..    +..  ++++....+.+...     .|....++|.+|.+||..+|.+...-|.          
T Consensus         2 Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~   81 (145)
T smart00212        2 RLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGE   81 (145)
T ss_pred             hHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCC
Confidence            67888888754422    122  23788888888742     3577889999999999999998875552          


Q ss_pred             -----ccccccCccccHHHHHHHHHHHH
Q 022965           77 -----IFNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 -----~f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                           ...-.|++..+|.+++...+.++
T Consensus        82 icl~~l~~~~W~p~~~l~~il~~i~~~l  109 (145)
T smart00212       82 ICLDILKQEKWSPATTLETVLLSIQSLL  109 (145)
T ss_pred             EehhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence                 11025998888988877766665

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=94.14  E-value=0.61  Score=38.89  Aligned_cols=82  Identities=20%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             HHHHHHHHhcccee-----eeec-CCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC--c-------
Q 022965           18 SVYSEIEEVGWEHL-----VRLS-EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--I-------   77 (289)
Q Consensus        18 ~l~~Ei~~igw~~l-----~~id-~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~--~-------   77 (289)
                      ||.+|+.++.-+..     .-.+ .++....+.+.-.     .|....++|.+|.+||.+||.+...-|+  +       
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~   80 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR   80 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence            57788877743322     2233 3788999988751     4678999999999999999988755432  0       


Q ss_pred             -----ccc-ccCccccHHHHHHHHHHHH
Q 022965           78 -----FNL-KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 -----f~l-~w~~~s~L~~i~~qF~~~l   99 (289)
                           +.- .|++..+|.+|+..++..|
T Consensus        81 icl~~l~~~~W~p~~~i~~il~~i~~ll  108 (140)
T PF00179_consen   81 ICLDILNPESWSPSYTIESILLSIQSLL  108 (140)
T ss_dssp             BGHGGGTTTTC-TTSHHHHHHHHHHHHH
T ss_pred             chhhhhhcccCCcccccccHHHHHHHHH
Confidence                 111 3998888888887666655

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.99  E-value=0.03  Score=49.08  Aligned_cols=46  Identities=24%  Similarity=0.516  Sum_probs=37.0

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE  278 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~  278 (289)
                      .++...|.||++++..            |    ....|||.|=..||..+...           .-.||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~------------p----~~l~C~H~~c~~C~~~~~~~-----------~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFRE------------P----VLLPCGHNFCRACLTRSWEG-----------PLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhc------------C----ccccccchHhHHHHHHhcCC-----------CcCCcccCC
Confidence            3466799999999851            3    23789999999999999881           369999994

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.012  Score=52.73  Aligned_cols=45  Identities=40%  Similarity=0.748  Sum_probs=38.2

Q ss_pred             CchHHHHHHHhcccCCCCCCC--cCCCCcccccccccccccchhhcc
Q 022965          183 KPFVENVANLLETQLPRPPEH--ENNYQQVECGICYAQFLPIDEELG  227 (289)
Q Consensus       183 ~~i~~NL~~il~~~~P~~~~~--~~~~~~~eC~ICy~~~l~~d~~~~  227 (289)
                      .++.+|++-++|+++|.|...  +++.++.||+||+..+++.+|++|
T Consensus       120 v~~P~gie~~~~i~L~dPe~~~led~kd~lE~df~a~a~Lekdd~~~  166 (234)
T KOG3268|consen  120 VSFPEGIECILGIELPDPEGLQLEDDKDQLECDFCAAAFLEKDDELG  166 (234)
T ss_pred             ccccccceEEeccccCCccccccccccceeeeCccHHHhcCcchhhh
Confidence            466789999999999999865  456688999999999999888764

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=93.82  E-value=0.019  Score=61.01  Aligned_cols=29  Identities=24%  Similarity=0.584  Sum_probs=26.3

Q ss_pred             CCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          241 SSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       241 ~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      .+|+|+||.+||..|-+.           -.+||.||..+
T Consensus       142 k~c~H~FC~~Ci~sWsR~-----------aqTCPiDR~EF  170 (1134)
T KOG0825|consen  142 KHTAHYFCEECVGSWSRC-----------AQTCPVDRGEF  170 (1134)
T ss_pred             cccccccHHHHhhhhhhh-----------cccCchhhhhh
Confidence            679999999999999998           68999999854

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=0.026  Score=60.54  Aligned_cols=56  Identities=30%  Similarity=0.596  Sum_probs=42.5

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccC--cccc----------------cccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTT--RQSY----------------DVLF  270 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~--r~sF----------------~~i~  270 (289)
                      +..|+||.-.++           .-|-.+   -.|||.||..||.+=...+-+.  ++-+                +++-
T Consensus       817 ~d~C~~C~~~ll-----------~~pF~v---f~CgH~FH~~Cl~~~v~~~~~~~~~~~~a~~l~~k~~~l~~~l~~iia  882 (911)
T KOG2034|consen  817 QDSCDHCGRPLL-----------IKPFYV---FPCGHCFHRDCLIRHVLSLLSEELSQKTAIELQAKRKKLKNELEDIIA  882 (911)
T ss_pred             ccchHHhcchhh-----------cCccee---eeccchHHHHHHHHHHHccccHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            458999999887           114333   6899999999999877765543  3666                7778


Q ss_pred             CCCCCCCc
Q 022965          271 GNCPYCSE  278 (289)
Q Consensus       271 g~CP~Cr~  278 (289)
                      ..||+|..
T Consensus       883 aeC~lCg~  890 (911)
T KOG2034|consen  883 AECPLCGE  890 (911)
T ss_pred             hhCccchH
Confidence            89999996

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.50  E-value=0.046  Score=52.43  Aligned_cols=51  Identities=27%  Similarity=0.583  Sum_probs=37.8

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      ..+|.|||..            +..|    .++.|+|.|-..||+-=...          -.++|++||.||.-.|.
T Consensus         7 ~~eC~IC~nt------------~n~P----v~l~C~HkFCyiCiKGsy~n----------dk~~CavCR~pids~i~   57 (324)
T KOG0824|consen    7 KKECLICYNT------------GNCP----VNLYCFHKFCYICIKGSYKN----------DKKTCAVCRFPIDSTID   57 (324)
T ss_pred             CCcceeeecc------------CCcC----ccccccchhhhhhhcchhhc----------CCCCCceecCCCCcchh
Confidence            4589999975            2344    46899999999999653332          15799999999876553

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.48  E-value=0.11  Score=45.59  Aligned_cols=54  Identities=24%  Similarity=0.664  Sum_probs=37.2

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCC---cchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSK---AFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h---~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ....+|=||++...         ...   .-|   +|..   .-|+.||.+|+..   ++      ...|+.|.++..++
T Consensus         6 ~~~~~CRIC~~~~~---------~~~---~PC---~CkGs~k~VH~sCL~rWi~~---s~------~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYD---------VVT---NYC---NCKNENKIVHKECLEEWINT---SK------NKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCC---------Ccc---CCc---ccCCCchHHHHHHHHHHHhc---CC------CCcccccCCeEEEE
Confidence            35568999987621         011   124   5655   5599999999997   22      35899999987766


Q ss_pred             c
Q 022965          284 I  284 (289)
Q Consensus       284 ~  284 (289)
                      -
T Consensus        62 ~   62 (162)
T PHA02825         62 K   62 (162)
T ss_pred             E
Confidence            3

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.28  E-value=0.79  Score=40.05  Aligned_cols=84  Identities=15%  Similarity=0.366  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhccceeee-----ecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcccc---
Q 022965           15 FSRSVYSEIEEVGWEHLVR-----LSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFNL---   80 (289)
Q Consensus        15 ~y~~l~~Ei~~igw~~l~~-----id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l---   80 (289)
                      =.++|.+|++.+.-+....     .+. ++..-+..+.--     .|+.-.++|++|.+||..||.+...=++ |+.   
T Consensus         6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i-~HPNV~   84 (153)
T COG5078           6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKI-FHPNVD   84 (153)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCC-cCCCcC
Confidence            4679999999998887322     333 777788877754     4688999999999999999998766552 221   


Q ss_pred             ------------ccCccccHHHHHHHHHHHH
Q 022965           81 ------------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 ------------~w~~~s~L~~i~~qF~~~l   99 (289)
                                  .|+|.-+|..|+-..+..|
T Consensus        85 ~~G~vCLdIL~~~WsP~~~l~sILlsl~slL  115 (153)
T COG5078          85 PSGNVCLDILKDRWSPVYTLETILLSLQSLL  115 (153)
T ss_pred             CCCCChhHHHhCCCCccccHHHHHHHHHHHH
Confidence                        6888777776666555444

>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]

Probab=92.45  E-value=0.078  Score=50.11  Aligned_cols=59  Identities=31%  Similarity=0.598  Sum_probs=44.0

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP  279 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~  279 (289)
                      .+|-||+..+++.+        .. --.|.|+-|+..+|..||.+  ..+.....-.--+-|.||-|++-
T Consensus       183 ~~celc~~ei~e~~--------~~-~a~c~~~~c~~~~h~~CLa~--~~~~~e~g~~~p~eg~cp~C~~~  241 (276)
T KOG3005|consen  183 VECELCEKEILETD--------WS-RATCPNPDCDSLNHLTCLAE--ELLEVEPGQLIPLEGMCPKCEKF  241 (276)
T ss_pred             hhhHHHHHHhcccc--------ce-eccCCCCCCCchhhhhhhhH--HHhccCCCceeccCCCCCchhce
Confidence            58999999986322        11 13589999999999999999  33334555566678999999984

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=92.25  E-value=0.093  Score=53.91  Aligned_cols=60  Identities=28%  Similarity=0.662  Sum_probs=45.1

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ++.+..+||+|-+.-.   |           .  .-.+|-|.|-..||.|+..+...+.      .-+||.|..++++-.
T Consensus       532 enk~~~~C~lc~d~ae---d-----------~--i~s~ChH~FCrlCi~eyv~~f~~~~------nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAE---D-----------Y--IESSCHHKFCRLCIKEYVESFMENN------NVTCPVCHIGLSIDL  589 (791)
T ss_pred             cccCceeecccCChhh---h-----------h--HhhhhhHHHHHHHHHHHHHhhhccc------CCCCccccccccccc
Confidence            3457789999987531   1           1  1278999999999999999855442      369999999998875


Q ss_pred             cc
Q 022965          285 SI  286 (289)
Q Consensus       285 ~~  286 (289)
                      +.
T Consensus       590 se  591 (791)
T KOG1002|consen  590 SE  591 (791)
T ss_pred             cc
Confidence            53

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=0.13  Score=50.25  Aligned_cols=69  Identities=22%  Similarity=0.412  Sum_probs=41.3

Q ss_pred             HHHHhcccCC-CCCCC-cCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcch-hhHHHHHHhhhccCccc
Q 022965          189 VANLLETQLP-RPPEH-ENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFH-SVCLGDWLRSITTTRQS  265 (289)
Q Consensus       189 L~~il~~~~P-~~~~~-~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH-~~CL~eWL~~l~~~r~s  265 (289)
                      |+.++|++=+ ...+. ++.+...+|-||+++-.              |.+  -+.|.|..= +.|- +-|+-       
T Consensus       268 LqEiyGien~~v~~~~~~~~~~gkeCVIClse~r--------------dt~--vLPCRHLCLCs~Ca-~~Lr~-------  323 (349)
T KOG4265|consen  268 LQEIYGIENSTVEGTDADESESGKECVICLSESR--------------DTV--VLPCRHLCLCSGCA-KSLRY-------  323 (349)
T ss_pred             eehhhccccCCCCCCccccccCCCeeEEEecCCc--------------ceE--EecchhhehhHhHH-HHHHH-------
Confidence            5667887622 22222 12245689999999742              111  167777653 4554 34552       


Q ss_pred             cccccCCCCCCCccccccc
Q 022965          266 YDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       266 F~~i~g~CP~Cr~~i~~~~  284 (289)
                         -.+.||.||++|.--+
T Consensus       324 ---q~n~CPICRqpi~~ll  339 (349)
T KOG4265|consen  324 ---QTNNCPICRQPIEELL  339 (349)
T ss_pred             ---hhcCCCccccchHhhh
Confidence               1479999999986443

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.58  E-value=1.2  Score=38.81  Aligned_cols=82  Identities=18%  Similarity=0.346  Sum_probs=61.0

Q ss_pred             HHHHHHHHhccceeeee-----cCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-----------
Q 022965           18 SVYSEIEEVGWEHLVRL-----SEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-----------   76 (289)
Q Consensus        18 ~l~~Ei~~igw~~l~~i-----d~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~-----------   76 (289)
                      +|++|+..+.-+....+     +.++.+.+.++..-.     |-...|.|.+|..||..||.+..-=++           
T Consensus         5 RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~I   84 (148)
T KOG0417|consen    5 RIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRI   84 (148)
T ss_pred             HHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccc
Confidence            89999998887776433     345777777777543     578999999999999999987654442           


Q ss_pred             ---ccccccCccccHHHHHHHHHHHH
Q 022965           77 ---IFNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ---~f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                         .+.-+|++..+|..|+...+..|
T Consensus        85 clDILk~~WsPAl~i~~VllsI~sLL  110 (148)
T KOG0417|consen   85 CLDILKDQWSPALTISKVLLSICSLL  110 (148)
T ss_pred             hHHhhhccCChhhHHHHHHHHHHHHh
Confidence               11226999888888887777666

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=90.74  E-value=0.14  Score=49.22  Aligned_cols=47  Identities=23%  Similarity=0.669  Sum_probs=35.0

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      .....+|.||+.++.            .|...|+|      +|-.|-.==.+.           ...||+||.+|+
T Consensus        45 ~~~lleCPvC~~~l~------------~Pi~QC~n------GHlaCssC~~~~-----------~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLS------------PPIFQCDN------GHLACSSCRTKV-----------SNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCc------------ccceecCC------CcEehhhhhhhh-----------cccCCccccccc
Confidence            445679999999986            58889988      566665332222           689999999987

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=89.84  E-value=0.31  Score=35.62  Aligned_cols=48  Identities=23%  Similarity=0.612  Sum_probs=36.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEPVAV  282 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~i~~  282 (289)
                      ...-|.+|-..+.+.||          ..+|  +.||-++|+.|-.+               .|.|-+  |..+++.
T Consensus         4 ~~~~C~~Cg~~~~~~dD----------iVvC--p~CgapyHR~C~~~---------------~g~C~~~~c~~~~~~   53 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDD----------IVVC--PECGAPYHRDCWEK---------------AGGCINYSCGTGFEW   53 (54)
T ss_pred             cCccChhhCCcccCCCC----------EEEC--CCCCCcccHHHHhh---------------CCceEeccCCCCccc
Confidence            34579999999864332          3579  88999999999754               688888  8877664

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.49  E-value=0.078  Score=51.87  Aligned_cols=51  Identities=31%  Similarity=0.531  Sum_probs=39.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .+..|.||++.+.          +.+.+     ..|.|.|-..||.+-|+.   +       ..+||.||+.+.-|
T Consensus        42 ~~v~c~icl~llk----------~tmtt-----keClhrfc~~ci~~a~r~---g-------n~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   42 IQVICPICLSLLK----------KTMTT-----KECLHRFCFDCIWKALRS---G-------NNECPTCRKKLVSK   92 (381)
T ss_pred             hhhccHHHHHHHH----------hhccc-----HHHHHHHHHHHHHHHHHh---c-------CCCCchHHhhcccc
Confidence            5678999999864          23332     578999999999999987   2       57999999976544

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.43  E-value=0.73  Score=46.10  Aligned_cols=52  Identities=29%  Similarity=0.616  Sum_probs=37.3

Q ss_pred             ccccccccccccchhhccccCCCCCcccc-cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTC-DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE  278 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C-~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~  278 (289)
                      -+|.|||+...          |+    .| .-.+|+|.|=..|+...+...-...+   +..-.||-|.-
T Consensus       185 f~C~ICf~e~~----------G~----~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~---v~~l~Cp~~~C  237 (445)
T KOG1814|consen  185 FDCCICFEEQM----------GQ----HCFKFLPCSHVFCKSCLKDYFTIQIQEGQ---VSCLKCPDPKC  237 (445)
T ss_pred             ccceeeehhhc----------Cc----ceeeecccchHHHHHHHHHHHHHhhhcce---eeeecCCCCCC
Confidence            47999999853          22    33 34899999999999999987553332   33567887654

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.08  E-value=0.35  Score=45.03  Aligned_cols=63  Identities=21%  Similarity=0.465  Sum_probs=45.1

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      +.|....|..|-.....         |     .|....|=|.||=.||.+|-..+|.+.-   ----.||-|+.+|--.+
T Consensus        46 DsDY~pNC~LC~t~La~---------g-----dt~RLvCyhlfHW~ClneraA~lPanTA---PaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   46 DSDYNPNCRLCNTPLAS---------G-----DTTRLVCYHLFHWKCLNERAANLPANTA---PAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             hcCCCCCCceeCCcccc---------C-----cceeehhhhhHHHHHhhHHHhhCCCcCC---CCcccCCCCCCccCCCc
Confidence            34566779999887542         2     2445789999999999999999884321   11358999999875443

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=87.15  E-value=0.3  Score=48.79  Aligned_cols=47  Identities=26%  Similarity=0.595  Sum_probs=34.8

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      .-|-||-+.-           .   |.  .-..|||..-..||..|=.+-.         ...||+||-.|.
T Consensus       370 eLCKICaend-----------K---dv--kIEPCGHLlCt~CLa~WQ~sd~---------gq~CPFCRcEIK  416 (563)
T KOG1785|consen  370 ELCKICAEND-----------K---DV--KIEPCGHLLCTSCLAAWQDSDE---------GQTCPFCRCEIK  416 (563)
T ss_pred             HHHHHhhccC-----------C---Cc--ccccccchHHHHHHHhhcccCC---------CCCCCceeeEec
Confidence            4799997641           1   11  2378999999999999987622         258999998764

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=87.12  E-value=0.56  Score=32.85  Aligned_cols=26  Identities=31%  Similarity=0.832  Sum_probs=17.6

Q ss_pred             CCCC---cchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965          242 SCSK---AFHSVCLGDWLRSITTTRQSYDVLFGNCPYC  276 (289)
Q Consensus       242 ~C~h---~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C  276 (289)
                      +|.-   .-|..||.+|++.-.         ...|+.|
T Consensus        19 ~C~Gs~~~vH~~CL~~W~~~~~---------~~~C~~C   47 (47)
T PF12906_consen   19 RCKGSMKYVHRSCLERWIRESG---------NRKCEIC   47 (47)
T ss_dssp             S-SSCCGSEECCHHHHHHHHHT----------SB-TTT
T ss_pred             ccCCCcchhHHHHHHHHHHhcC---------CCcCCCC
Confidence            4554   899999999999711         2468876

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=86.87  E-value=5.3  Score=34.41  Aligned_cols=86  Identities=15%  Similarity=0.292  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhccce----eeeecCCcceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccCCCccc--c----
Q 022965           16 SRSVYSEIEEVGWEH----LVRLSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPYIFN--L----   80 (289)
Q Consensus        16 y~~l~~Ei~~igw~~----l~~id~~l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l----   80 (289)
                      -.+|.+|+-++.-+-    .+.+..+++.-.+.+..+.|     ....|-++++..||.+.|.+..-=|.+..  +    
T Consensus        17 t~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNG   96 (161)
T KOG0427|consen   17 TNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNG   96 (161)
T ss_pred             HHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCC
Confidence            457888998876553    25678889988888887754     78899999999999999988755454332  2    


Q ss_pred             ---------ccCccccHHHHHHHHHHHHHH
Q 022965           81 ---------KWSRKSRLKDLLQQFREHLEK  101 (289)
Q Consensus        81 ---------~w~~~s~L~~i~~qF~~~le~  101 (289)
                               .|+|.-++..|+-....+|.+
T Consensus        97 HICL~iL~d~WsPAmsv~SvClSIlSMLSS  126 (161)
T KOG0427|consen   97 HICLDILYDSWSPAMSVQSVCLSILSMLSS  126 (161)
T ss_pred             eEEEEeecccCCcchhhHHHHHHHHHHHcc
Confidence                     699988888888777777754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.83  E-value=0.51  Score=50.45  Aligned_cols=27  Identities=30%  Similarity=0.858  Sum_probs=23.6

Q ss_pred             ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC
Q 022965          236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY  275 (289)
Q Consensus       236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~  275 (289)
                      ..|  +.|+|.-|..|..+|+++           ...||.
T Consensus      1043 ~~C--g~C~Hv~H~sc~~eWf~~-----------gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFC--GTCGHVGHTSCMMEWFRT-----------GDVCPS 1069 (1081)
T ss_pred             hhh--ccccccccHHHHHHHHhc-----------CCcCCC
Confidence            467  789999999999999999           568884

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=85.66  E-value=0.5  Score=46.79  Aligned_cols=52  Identities=23%  Similarity=0.532  Sum_probs=40.8

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      +....|.||.....            -|-++   ..|||.|=..|+.+|+..           +..||-|+..+....
T Consensus        19 ~~~l~C~~C~~vl~------------~p~~~---~~cgh~fC~~C~~~~~~~-----------~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   19 DENLLCPICMSVLR------------DPVQT---TTCGHRFCAGCLLESLSN-----------HQKCPVCRQELTQAE   70 (391)
T ss_pred             cccccCcccccccc------------CCCCC---CCCCCcccccccchhhcc-----------CcCCcccccccchhh
Confidence            45568999999864            12221   589999999999999998           689999998876543

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=85.35  E-value=0.43  Score=34.88  Aligned_cols=46  Identities=15%  Similarity=0.403  Sum_probs=27.6

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY  275 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~  275 (289)
                      +.....|+|....+..            |-   .+.+|||.|-...|.+||++    +.     ...||.
T Consensus         8 ~~~~~~CPiT~~~~~~------------PV---~s~~C~H~fek~aI~~~i~~----~~-----~~~CPv   53 (57)
T PF11789_consen    8 GTISLKCPITLQPFED------------PV---KSKKCGHTFEKEAILQYIQR----NG-----SKRCPV   53 (57)
T ss_dssp             SB--SB-TTTSSB-SS------------EE---EESSS--EEEHHHHHHHCTT----TS------EE-SC
T ss_pred             cEeccCCCCcCChhhC------------Cc---CcCCCCCeecHHHHHHHHHh----cC-----CCCCCC
Confidence            3456789999998741            21   24699999999999999943    11     468998

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=84.90  E-value=0.68  Score=44.11  Aligned_cols=46  Identities=24%  Similarity=0.520  Sum_probs=34.8

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE  278 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~  278 (289)
                      ..|.||++++....        ..|    +..+|||.-|..|+.+-..+           .-+||.|.+
T Consensus       159 ~ncPic~e~l~~s~--------~~~----~~~~CgH~~h~~cf~e~~~~-----------~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSF--------EDA----GVLKCGHYMHSRCFEEMICE-----------GYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhcccc--------ccC----CccCcccchHHHHHHHHhcc-----------CCCCCcccc
Confidence            34999999876211        122    34899999998888887666           479999998

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=84.75  E-value=0.46  Score=50.36  Aligned_cols=49  Identities=20%  Similarity=0.647  Sum_probs=38.1

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +...|+.|-.-.                +.+.-++|||.|=..|+..-+.+    ||      -.||-|..+++.
T Consensus       642 ~~LkCs~Cn~R~----------------Kd~vI~kC~H~FC~~Cvq~r~et----Rq------RKCP~Cn~aFga  690 (698)
T KOG0978|consen  642 ELLKCSVCNTRW----------------KDAVITKCGHVFCEECVQTRYET----RQ------RKCPKCNAAFGA  690 (698)
T ss_pred             hceeCCCccCch----------------hhHHHHhcchHHHHHHHHHHHHH----hc------CCCCCCCCCCCc
Confidence            345799999543                22345899999999999887776    65      699999998765

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.31  E-value=0.11  Score=51.44  Aligned_cols=51  Identities=18%  Similarity=0.408  Sum_probs=40.3

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      -...|+||+..+..   ++         ..|....|||.+|+.||.+||.+           ...||-|+..+.
T Consensus       195 lv~sl~I~~~slK~---~y---------~k~~~~~~g~~~~~~kL~k~L~~-----------~~kl~~~~rel~  245 (465)
T KOG0827|consen  195 LVGSLSICFESLKQ---NY---------DKISAIVCGHIYHHGKLSKWLAT-----------KRKLPSCRRELP  245 (465)
T ss_pred             HHhhhHhhHHHHHH---HH---------HHHHHHhhcccchhhHHHHHHHH-----------HHHhHHHHhhhh
Confidence            44689999987652   11         24677899999999999999998           578999988654

>PHA03096 p28-like protein; Provisional

Probab=83.75  E-value=0.78  Score=43.81  Aligned_cols=58  Identities=16%  Similarity=0.210  Sum_probs=35.7

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      .+||||++....-. ..+...|.       .+.|.|.|=..|+..|-.+-..+     -+...||-|+.-+
T Consensus       179 k~c~ic~e~~~~k~-~~~~~fgi-------l~~c~h~fc~~ci~~wr~~~~~~-----e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKY-IIKKYYGI-------LSEIKHEFNIFCIKIWMTESLYK-----ETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhc-cccccccc-------cccCCcHHHHHHHHHHHHhhhhc-----ccCccccchhhHH
Confidence            68999999865210 00001122       36799999999999999863322     2345566665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.38  E-value=0.54  Score=50.68  Aligned_cols=41  Identities=22%  Similarity=0.561  Sum_probs=31.5

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP  279 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~  279 (289)
                      ..|.+|-...            .+|-.   .-.|||.||++|+.   +.           -..||-|+-.
T Consensus       841 skCs~C~~~L------------dlP~V---hF~CgHsyHqhC~e---~~-----------~~~CP~C~~e  881 (933)
T KOG2114|consen  841 SKCSACEGTL------------DLPFV---HFLCGHSYHQHCLE---DK-----------EDKCPKCLPE  881 (933)
T ss_pred             eeecccCCcc------------cccee---eeecccHHHHHhhc---cC-----------cccCCccchh
Confidence            5799998764            35643   46899999999997   22           4699999874

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=81.77  E-value=0.54  Score=36.78  Aligned_cols=32  Identities=16%  Similarity=0.442  Sum_probs=22.8

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHH
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLG  253 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~  253 (289)
                      ....|++|...+.         +     ....--+|||.||..|+.
T Consensus        77 ~~~~C~vC~k~l~---------~-----~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLG---------N-----SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCC---------C-----ceEEEeCCCeEEeccccc
Confidence            3457999999864         1     122336789999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.71  E-value=8.7  Score=34.88  Aligned_cols=57  Identities=25%  Similarity=0.392  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhccce--------eeeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccc
Q 022965           16 SRSVYSEIEEVGWEH--------LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISA   72 (289)
Q Consensus        16 y~~l~~Ei~~igw~~--------l~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~   72 (289)
                      +++|-+|..++--+.        +.-++.+++.|+..+..--     |-...|.|++|.+||..||-+..
T Consensus         5 ~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F   74 (200)
T KOG0418|consen    5 FKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKF   74 (200)
T ss_pred             HHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceee
Confidence            466777777665553        3556778999999887543     46788999999999999998843

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.58  E-value=0.97  Score=45.11  Aligned_cols=47  Identities=26%  Similarity=0.675  Sum_probs=35.5

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      .+-+|.||+..+-+            |    .++.|||.|=..||..=|..           ...||.||.++.
T Consensus        83 sef~c~vc~~~l~~------------p----v~tpcghs~c~~Cl~r~ld~-----------~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   83 SEFECCVCSRALYP------------P----VVTPCGHSFCLECLDRSLDQ-----------ETECPLCRDELV  129 (398)
T ss_pred             chhhhhhhHhhcCC------------C----ccccccccccHHHHHHHhcc-----------CCCCcccccccc
Confidence            45789999887641            2    23689999999998773332           689999999874

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.80  E-value=1.4  Score=41.23  Aligned_cols=51  Identities=24%  Similarity=0.513  Sum_probs=38.0

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      .+|.||-..|..++      ...+|    .+++|||.|=..|+..=+..   +       ...||+||.+.
T Consensus         4 ~~c~~c~~~~s~~~------~~~~p----~~l~c~h~~c~~c~~~l~~~---~-------~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSED------GDHIP----RVLKCGHTICQNCASKLLGN---S-------RILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccC------cccCC----cccccCceehHhHHHHHhcC---c-------eeeccCCCCcc
Confidence            47999999997432      22345    35889999999999775554   2       46889999984

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.75  E-value=0.47  Score=45.67  Aligned_cols=87  Identities=15%  Similarity=0.254  Sum_probs=53.4

Q ss_pred             hhhHHHHHhhhcccccCCCCchHHHHHHHhcccCCCC--CCCcCCCCcccccccccccccchhhccccCCCCCcccccCC
Q 022965          164 MVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRP--PEHENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNS  241 (289)
Q Consensus       164 ~v~~lr~~l~~n~~~Wd~~~~i~~NL~~il~~~~P~~--~~~~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~  241 (289)
                      .|.+|.+.+.++...|--=..=.+++.++...---..  +.........-|+|||..-                +.|.-+
T Consensus       253 ~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k~~~g~~~~~s~~~~~LC~ICmDaP----------------~DCvfL  316 (350)
T KOG4275|consen  253 TVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYKGNDGEQHSRSLATRRLCAICMDAP----------------RDCVFL  316 (350)
T ss_pred             hHHHhhhhhhccCCcccchhHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhcCC----------------cceEEe
Confidence            4889999888888888544445566666655321111  1111122367899999852                357788


Q ss_pred             CCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          242 SCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       242 ~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      .|||.-  .|-.=      ++|      -..||.||+.|
T Consensus       317 eCGHmV--tCt~C------Gkr------m~eCPICRqyi  341 (350)
T KOG4275|consen  317 ECGHMV--TCTKC------GKR------MNECPICRQYI  341 (350)
T ss_pred             ecCcEE--eehhh------ccc------cccCchHHHHH
Confidence            888863  34311      222      35999999976

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=80.69  E-value=1.4  Score=47.67  Aligned_cols=55  Identities=27%  Similarity=0.595  Sum_probs=38.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCC---CcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCS---KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~---h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +...|-||..+-.+ |           +..|.--||.   +..|+.||.||+.-  +.       .-.|-.|..++..|
T Consensus        11 d~~~CRICr~e~~~-d-----------~pLfhPCKC~GSIkYiH~eCL~eW~~~--s~-------~~kCdiChy~~~Fk   68 (1175)
T COG5183          11 DKRSCRICRTEDIR-D-----------DPLFHPCKCSGSIKYIHRECLMEWMEC--SG-------TKKCDICHYEYKFK   68 (1175)
T ss_pred             cchhceeecCCCCC-C-----------CcCcccccccchhHHHHHHHHHHHHhc--CC-------Ccceeeecceeeee
Confidence            44789999986331 1           1235444665   57899999999984  22       35899999987765

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.12  E-value=6.9  Score=37.95  Aligned_cols=46  Identities=22%  Similarity=0.552  Sum_probs=32.9

Q ss_pred             cccCCCCCCcchhhHHHHHHhhhccC--ccccccccCCCCCCCccccc
Q 022965          237 TCDNSSCSKAFHSVCLGDWLRSITTT--RQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       237 ~C~n~~C~h~FH~~CL~eWL~~l~~~--r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      -|.|--|.-..-..||..|+.+-.+.  |.-+.--..+||+||++.-+
T Consensus       319 ~c~nc~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci  366 (381)
T KOG3899|consen  319 PCENCICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI  366 (381)
T ss_pred             cccccccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence            48888899999999999999761111  11233446899999997644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
3zqs_A	186	Human Fancl Central Domain Length = 186		1e-25
3k1l_B	381	Crystal Structure Of Fancl Length = 381		2e-09

>pdb|3ZQS|A Chain A, Human Fancl Central Domain Length = 186

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 88/173 (50%)
Query: 26  VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRK 85
           +GW+ LV        +  +  D  GR H + ++L   YP   P    D P  F   W+ +
Sbjct: 13  LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ 72
Query: 86  SRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI 145
           S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I LG N  I + +
Sbjct: 73  SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV 132
Query: 146 HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLP 198
               P+ LPEC F+G+D +V  L     RN   W+ +   ++N+ ++LE   P
Sbjct: 133 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFP 185

>pdb|3K1L|B Chain B, Crystal Structure Of Fancl Length = 381

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 88  LKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHI 147
           L++ L  FR+ LE L+  ++   +ID+   V+     S  +  R   L     + L + I
Sbjct: 179 LEEALNLFRKLLEDLRPFYDNFMDIDELCHVLQPSPISSKHKTRLFPLKDR--VYLKLTI 236
Query: 148 DDPSSL---PECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLET-QLPRP--- 200
            DP +       + +G    V  LR         W+ +    +N+  + +    P P   
Sbjct: 237 ADPFACIASMSLKIIGPTEEVARLRHVLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWS 296
Query: 201 --PE-HENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLR 257
             P+  E + +++ C IC+A  L          G     +CDN+ C    H+VCL +W +
Sbjct: 297 DGPKLDEEDNEELRCNICFAYRL--------DGGEVPLVSCDNAKCVLKCHAVCLEEWFK 348
Query: 258 SITTTRQSYDVLFGNCPYCSEPVAVKIS 285
           ++   +   +V FG CP+C   ++   +
Sbjct: 349 TLMDGKTFLEVSFGQCPFCKAKLSTSFA 376

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	5e-72
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	9e-67
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score =  225 bits (574), Expect = 5e-72
 Identities = 52/294 (17%), Positives = 104/294 (35%), Gaps = 19/294 (6%)

Query: 1   MEQSRCRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVI-DKKGRVHCMEIQL 59
           +   +            ++Y +I  +   +   L  D      R         H +E+++
Sbjct: 93  LPAQKAPTVPKELCREGNIYYDILALYKSNEYCLQVDEACSMIRFSEFTDFEQHYLELKI 152

Query: 60  DKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVI 119
                        D   +  +       L++ L  FR+ LE L+  ++   +ID+   V+
Sbjct: 153 PSLLLLDHSL--PDCVSLGEMLTKSAGNLEEALNLFRKLLEDLRPFYDNFMDIDELCHVL 210

Query: 120 DLKNPSRANVCRQINLGYNCIIMLSI-HIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKR 178
                S  +  R   L     + L+I       +    + +G    V  LR         
Sbjct: 211 QPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKIIGPTEEVARLRHVLSDGLSN 270

Query: 179 WNKDKPFVENVANLLETQLPRPP-------EHENNYQQVECGICYAQFLPIDEELGAKSG 231
           W+ +    +N+  + +      P         E + +++ C IC+A  L   E       
Sbjct: 271 WDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEV------ 324

Query: 232 GGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS 285
                +CDN+ C    H+VCL +W +++   +   +V FG CP+C   ++   +
Sbjct: 325 --PLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens} Length = 186

 Score =  205 bits (523), Expect = 9e-67
 Identities = 58/184 (31%), Positives = 93/184 (50%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADV 74
           F  S+  EI  +GW+ LV        +  +  D  GR H + ++L   YP   P    D 
Sbjct: 2   FYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDF 61

Query: 75  PYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQIN 134
           P  F   W+ +S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R+I 
Sbjct: 62  PVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIA 121

Query: 135 LGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLE 194
           LG N  I + +    P+ LPEC F+G+D +V  L     RN   W+ +   ++N+ ++LE
Sbjct: 122 LGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLE 181

Query: 195 TQLP 198
              P
Sbjct: 182 IDFP 185

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 15/107 (14%)

Query: 180 NKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFLPID--EELGAKSGGGTDYT 237
           +      E V      +L   PE +       C IC  +        ++      G    
Sbjct: 3   SGSSGEPEQVIRKYTEELKVAPEED-------CIICMEKLAVASGYSDMTDSKALGPMVV 55

Query: 238 CDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI 284
              + CS AFH +CL     +              CP C      K 
Sbjct: 56  GRLTKCSHAFHLLCLLAMYCN------GNKDGSLQCPSCKTIYGEKT 96

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 31/243 (12%), Positives = 71/243 (29%), Gaps = 68/243 (27%)

Query: 6   CRESANSSSFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEI------QL 59
           C            ++       W            L+ +  +    V  +E+      Q+
Sbjct: 171 CLSYKVQCKMDFKIF-------W------------LNLKNCNSPETV--LEMLQKLLYQI 209

Query: 60  DKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEI-DKSLW- 117
           D N+  S    S+++    +   S ++ L+ LL+  + +   L     +L  + +   W 
Sbjct: 210 DPNW-TSRSDHSSNIKLRIH---SIQAELRRLLKS-KPYENCLL----VLLNVQNAKAWN 260

Query: 118 VIDLKNP----SR-ANVCRQINLGYNCIIMLSIHIDDPSSLPEC-----RFMGSDPMVNS 167
             +L       +R   V   ++      I L  H     +  E      +++   P    
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRP--QD 317

Query: 168 LRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVEC-------GICYAQFL 220
           L +     +       P      +++   +       +N++ V C               
Sbjct: 318 LPREVLTTN-------PRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 221 PID 223
           P +
Sbjct: 368 PAE 370

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 76/234 (32%)

Query: 15  FSRSVYSEIEEVGWEHLVRLSED---LKFLSFRVIDKKGRV--HCMEIQLDKNYP----- 64
             +S+ S+ EE+  +H++   +       L + ++ K+  +    +E  L  NY      
Sbjct: 41  MPKSILSK-EEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 65  -----RSPPSISADVPYIFNLKWS-----RK---SRLKDLLQQFREHLEKLQEIWNILDE 111
                R P  ++       +  ++      K   SRL+    + R+ L +L+   N+L  
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVL-- 154

Query: 112 ID------KSLWVIDLKNPSRANVCRQ-------------INLGYNC------IIMLS-- 144
           ID      K+ WV         +VC               +NL  NC      + ML   
Sbjct: 155 IDGVLGSGKT-WVA-------LDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKL 205

Query: 145 IHIDDPSSLPECRFMGSDPM-VNSLRKTWQRNSKRWNKDKPFVE------NVAN 191
           ++  DP+         +  + ++S++       +R  K KP+        NV N
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQA----ELRRLLKSKPYENCLLVLLNVQN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	100.0
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	100.0
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.27
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.25
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.23
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.17
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.17
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.15
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.14
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.14
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.14
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.13
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.11
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.05
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.05
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.01
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.0
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.96
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.95
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.9
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.88
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.88
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.85
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.81
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.8
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.75
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.75
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.73
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.73
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.72
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.67
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.64
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.63
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.63
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.63
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.61
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.59
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.57
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.56
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.56
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.55
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.52
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.51
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.45
3nw0_A	238	Non-structural maintenance of chromosomes element	98.44
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.41
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.38
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.36
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.33
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.3
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.3
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.24
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.21
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.15
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.12
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.09
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.02
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.01
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.95
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.88
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.85
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.85
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.79
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	97.57
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	97.55
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	97.51
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.5
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.48
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.23
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	96.97
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	96.78
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	96.49
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	96.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	95.74
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	95.66
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	95.5
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	95.31
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	95.21
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	95.08
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	95.06
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	94.97
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	94.96
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	94.93
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	94.88
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	94.86
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	94.79
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	94.69
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	94.63
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	94.61
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	94.61
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	94.5
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	94.38
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	94.32
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	94.3
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	94.25
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	94.21
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	94.15
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	94.15
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	94.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	93.9
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	93.75
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	93.69
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	93.54
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	93.46
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	93.46
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	93.38
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	93.24
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	93.19
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	93.16
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	92.98
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	92.88
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	92.82
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	92.72
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	92.19
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	92.17
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	92.11
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	91.99
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	91.93
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	91.26
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	90.81
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	90.49
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	90.27
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	90.17
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	90.09
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	89.6
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	88.92
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	85.3
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	85.06
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	82.77
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	81.93
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	80.08

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=100.00  E-value=2.8e-77  Score=567.63  Aligned_cols=256  Identities=21%  Similarity=0.419  Sum_probs=236.1

Q ss_pred             HHHHHHHHHhcccee--eeecCCcceEEEEEEeCCCCEEEEEEEeCCCCCCCCCCccccCCCcccc---ccCccccHHHH
Q 022965           17 RSVYSEIEEVGWEHL--VRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNL---KWSRKSRLKDL   91 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l--~~id~~l~~i~l~~~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l---~w~~~s~L~~i   91 (289)
                      ++|+.||++|..+.-  +++|.+++.|+|..++ ..|+|+|+++++     ..-.++++||..+.+   --.++|+|.++
T Consensus       109 ~~i~~~~~~l~~~~~~~l~~~~~~s~i~~~~f~-~~~~h~Lel~~~-----~~~v~~h~LP~~~~~~e~l~k~~ssL~~v  182 (381)
T 3k1l_B          109 GNIYYDILALYKSNEYCLQVDEACSMIRFSEFT-DFEQHYLELKIP-----SLLLLDHSLPDCVSLGEMLTKSAGNLEEA  182 (381)
T ss_dssp             CCHHHHHHHHHSCSSCEEEECGGGCEEEEEEET-TEEEEEEEEETT-----TCCEEEESSCTTSCHHHHHHHHCCSHHHH
T ss_pred             hhHHHHHHHhcCccceEEEecCCccEEEecccc-CccceEEEEecC-----ceEEecccCCcchhHHHHhcCccccHHHH
Confidence            579999999998866  6677889999999995 779999999998     234778899966532   12447899999


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEE-eCCCCCCCCceEEecCchhhhHHHH
Q 022965           92 LQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSI-HIDDPSSLPECRFMGSDPMVNSLRK  170 (289)
Q Consensus        92 ~~qF~~~le~lq~fwd~ldeID~~~wVleP~~P~~~~~~RrI~l~~~~sl~i~v-dp~~P~~lP~~~flG~~~~v~~lr~  170 (289)
                      ++||+++||+||+|||+|||||++||||||++|+|++++||||||++|||+|+| ||++|+|+|+|+|+|++++|++||+
T Consensus       183 ~~qF~~~LE~Lq~FWd~LdeID~~~wVLEP~kPtrs~t~RRIaLgn~vSl~IeV~DP~~Pr~lPe~~FlGpd~~V~~Lr~  262 (381)
T 3k1l_B          183 LNLFRKLLEDLRPFYDNFMDIDELCHVLQPSPISSKHKTRLFPLKDRVYLKLTIADPFACIASMSLKIIGPTEEVARLRH  262 (381)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHSCCCBSSSCCTTCCEEEEEEETTEEEEEEESCTTSTTTTEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCceEEEEeCCCeEEEEEeCCCCCCCcCceeEEECChhHhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HhhhcccccCCCCchHHHHHHHhcc-cCCCCCCCc------CCCCcccccccccccccchhhccccCCCCCcccccCCCC
Q 022965          171 TWQRNSKRWNKDKPFVENVANLLET-QLPRPPEHE------NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSC  243 (289)
Q Consensus       171 ~l~~n~~~Wd~~~~i~~NL~~il~~-~~P~~~~~~------~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C  243 (289)
                      +|++|+++||+++++++||+++||+ +||+|+..+      ++++..+|||||++++        ++|++|+++|+|++|
T Consensus       263 ~l~~Nl~~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECaICys~~l--------~~g~lPdk~C~n~~C  334 (381)
T 3k1l_B          263 VLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRL--------DGGEVPLVSCDNAKC  334 (381)
T ss_dssp             HHHHHHHTCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCSSSCCSSC--------TTCCCCCBCCSCTTC
T ss_pred             HHhhhhhhcCccCCHHHHHHHHhCccccCCCcccccccccccccCCccCcccceeec--------CCCCCccccccCCcc
Confidence            9999999999999999999999999 899998764      5778999999999997        358999999999999


Q ss_pred             CCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccccc
Q 022965          244 SKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISI  286 (289)
Q Consensus       244 ~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~~  286 (289)
                      ||.||+.||++||++++++||||++++|+|||||++|++++.+
T Consensus       335 ~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~  377 (381)
T 3k1l_B          335 VLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAA  377 (381)
T ss_dssp             CCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGG
T ss_pred             CCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHH
Confidence            9999999999999999999999999999999999999998754

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-73  Score=500.59  Aligned_cols=186  Identities=31%  Similarity=0.664  Sum_probs=184.8

Q ss_pred             hHHHHHHHHHHHhccceeeeecCCcceEEEEEEeCCCCEEEEEEEeCCCCCCCCCCccccCCCccccccCccccHHHHHH
Q 022965           14 SFSRSVYSEIEEVGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQ   93 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l~~id~~l~~i~l~~~D~~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l~w~~~s~L~~i~~   93 (289)
                      +||++|++||++|||+||+++|++|++|+|+++|++||+|.|+|+|+++||+++|+|.+|||++|.++|+++|+|.++++
T Consensus         1 ~~y~~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~~~w~~~ssL~~v~~   80 (186)
T 3zqs_A            1 QFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYS   80 (186)
T ss_dssp             CCSCSHHHHHHHHCGGGEEEECTTSSEEEEEEECTTSCEEEEEEECCTTTTTSCCEEECCCSSCCCCCCCTTCCHHHHHH
T ss_pred             ChHHHHHHHHHHhCCceeeeecCCccEEEEEEEeCCCCeEEEEEEECCCCCCCCCeeEEcCCCCcccccCCCccHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHhhhccceeecCCCCCCCceeEEEEeCCceEEEEEEeCCCCCCCCceEEecCchhhhHHHHHhh
Q 022965           94 QFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQINLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQ  173 (289)
Q Consensus        94 qF~~~le~lq~fwd~ldeID~~~wVleP~~P~~~~~~RrI~l~~~~sl~i~vdp~~P~~lP~~~flG~~~~v~~lr~~l~  173 (289)
                      ||+++||+||+|||+||+||++||||||++|+||+++||||||+||||+|+|||++|+|+|+|+|+|++++|++||++|+
T Consensus        81 qF~~~Le~lq~Fwd~ldeID~~~wVleP~~Ptr~~~~RRIalg~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~~~~  160 (186)
T 3zqs_A           81 QFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLS  160 (186)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHSCEEESSSCCTTCCEEEEEEETTEEEEEECCTTSTTSCCEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcceeccCCCCCccCcEEEEEECCCcEEEEEECCCCCCcCCceEEECChHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCCchHHHHHHHhcccCCC
Q 022965          174 RNSKRWNKDKPFVENVANLLETQLPR  199 (289)
Q Consensus       174 ~n~~~Wd~~~~i~~NL~~il~~~~P~  199 (289)
                      +|+++||+++++++||+++||++||+
T Consensus       161 ~nl~~Wd~~~~i~~NL~~il~i~~Ps  186 (186)
T 3zqs_A          161 RNIHLWDPENSVLQNLKDVLEIDFPA  186 (186)
T ss_dssp             HHGGGCCTTSCHHHHHHHHHTCCCCC
T ss_pred             hhHhhcCCCCCHHHHHHHHHCCcCCC
Confidence            99999999999999999999999996

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-12  Score=98.00  Aligned_cols=56  Identities=21%  Similarity=0.580  Sum_probs=45.7

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      .+...+|+||++.+.             |++.|.  .|+|.||..||++||++    ++     ..+||+|++++..+..
T Consensus        12 ~~~i~~C~IC~~~i~-------------~g~~C~--~C~h~fH~~Ci~kWl~~----~~-----~~~CP~Cr~~w~~~~~   67 (74)
T 2ct0_A           12 PDAVKICNICHSLLI-------------QGQSCE--TCGIRMHLPCVAKYFQS----NA-----EPRCPHCNDYWPHEIP   67 (74)
T ss_dssp             SSSSCBCSSSCCBCS-------------SSEECS--SSCCEECHHHHHHHSTT----CS-----SCCCTTTCSCCCSCCC
T ss_pred             cCCCCcCcchhhHcc-------------cCCccC--CCCchhhHHHHHHHHHh----cC-----CCCCCCCcCcCCCCCC
Confidence            456789999999985             567894  99999999999999987    11     2799999999876643

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.25  E-value=6.6e-12  Score=91.42  Aligned_cols=58  Identities=24%  Similarity=0.658  Sum_probs=44.2

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      +++...+|+||++.+..         +..  .  ....|||.||..||.+|++.           .++||+||.++...+
T Consensus        10 ~~~~~~~C~IC~~~~~~---------~~~--~--~~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEE---------GED--V--RRLPCMHLFHQVCVDQWLIT-----------NKKCPICRVDIEAQL   65 (69)
T ss_dssp             STTCCCSBTTTTBCCCS---------SSC--E--EECTTSCEEEHHHHHHHHHH-----------CSBCTTTCSBSCSCC
T ss_pred             cCCCCCCCeeCCccccC---------CCc--E--EEeCCCCHHHHHHHHHHHHc-----------CCCCcCcCccccCcC
Confidence            44567789999998741         111  1  22679999999999999998           578999999988765


Q ss_pred             cc
Q 022965          285 SI  286 (289)
Q Consensus       285 ~~  286 (289)
                      ..
T Consensus        66 ~~   67 (69)
T 2kiz_A           66 PS   67 (69)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.23  E-value=3.6e-12  Score=88.79  Aligned_cols=52  Identities=35%  Similarity=0.786  Sum_probs=39.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +..+|+||++.+..         +..+   -..+.|||.||..||.+|+++           ..+||+||+++.+
T Consensus         4 ~~~~C~IC~~~~~~---------~~~~---~~~~~C~H~f~~~Ci~~w~~~-----------~~~CP~Cr~~~~v   55 (55)
T 1iym_A            4 DGVECAVCLAELED---------GEEA---RFLPRCGHGFHAECVDMWLGS-----------HSTCPLCRLTVVV   55 (55)
T ss_dssp             CSCCCTTTCCCCCT---------TSCC---EECSSSCCEECTTHHHHTTTT-----------CCSCSSSCCCSCC
T ss_pred             CCCcCccCCccccC---------CCce---EECCCCCCcccHHHHHHHHHc-----------CCcCcCCCCEeEC
Confidence            45689999999752         1111   112469999999999999987           5799999998864

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=88.78  Aligned_cols=57  Identities=26%  Similarity=0.547  Sum_probs=42.3

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      .+...+|+||++.+....         .+........|||.||..||.+|++.           ...||+||++++-
T Consensus        12 ~~~~~~C~IC~~~~~~~~---------~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIV---------QNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHT---------TTTCCEEECSSSCEEEHHHHHHHHHH-----------CSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccc---------cccCCeEeCCCCChhcHHHHHHHHHc-----------CCCCCCCCCccCc
Confidence            446678999999875110         01111123789999999999999997           5799999999864

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.2e-11  Score=93.98  Aligned_cols=61  Identities=25%  Similarity=0.609  Sum_probs=41.5

Q ss_pred             Ccccccccccccccc----hhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPI----DEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~----d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .+..|+||++.+...    .++..  .+   +..-..++|||.||..||.+||++           ..+||+||+++..+
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~--~~---~~~~~~~~C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENK--QE---DCVVVWGECNHSFHNCCMSLWVKQ-----------NNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTC--TT---TCCEEEETTSCEEEHHHHHHHTTT-----------CCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccC--CC---ceEEEeCCCCCccChHHHHHHHHh-----------CCCCCCcCCCcchh
Confidence            345799999987420    00000  11   111223579999999999999998           67999999998765


Q ss_pred             c
Q 022965          284 I  284 (289)
Q Consensus       284 ~  284 (289)
                      -
T Consensus        78 ~   78 (81)
T 2ecl_A           78 R   78 (81)
T ss_dssp             E
T ss_pred             h
Confidence            3

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.15  E-value=2.3e-11  Score=84.43  Aligned_cols=51  Identities=25%  Similarity=0.548  Sum_probs=39.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      ...+|+||++.+..        .+..+    ....|||.||..||.+|++.           ...||+||++++
T Consensus         4 ~~~~C~IC~~~~~~--------~~~~~----~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHT--------SRVVA----HVLPCGHLLHRTCYEEMLKE-----------GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCT--------TTSCE----EECTTSCEEETTHHHHHHHH-----------TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcC--------CCcCe----EecCCCCcccHHHHHHHHHc-----------CCcCCCCCCcCC
Confidence            45689999998741        11111    23779999999999999998           579999999875

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=2.4e-11  Score=89.54  Aligned_cols=53  Identities=34%  Similarity=0.716  Sum_probs=40.5

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      .+...+|+||++.+..         +   .. .....|||.||..||.+|++.           ...||+||+++.-
T Consensus        12 ~~~~~~C~IC~~~~~~---------~---~~-~~~~~C~H~f~~~Ci~~~~~~-----------~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKP---------R---DE-LGICPCKHAFHRKCLIKWLEV-----------RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCSCBCSSSCCBCCS---------S---SC-EEEETTTEEEEHHHHHHHHHH-----------CSBCTTTCCBCSS
T ss_pred             CCCCCCCcCCCcccCC---------C---Cc-EEEcCCCCEecHHHHHHHHHc-----------CCcCCCcCccccc
Confidence            3456789999999751         1   11 112479999999999999998           5699999998753

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.14  E-value=1.8e-11  Score=94.59  Aligned_cols=54  Identities=28%  Similarity=0.704  Sum_probs=41.5

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .+...+|+||++.+..         +.    ......|||.||..||.+||+.           .++||+||+++.-.
T Consensus        37 ~~~~~~C~IC~~~~~~---------~~----~~~~l~C~H~Fh~~Ci~~wl~~-----------~~~CP~Cr~~~~~~   90 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVK---------GD----VATELPCHHYFHKPCVSIWLQK-----------SGTCPVCRCMFPPP   90 (91)
T ss_dssp             SSSCSEETTTTEECCT---------TC----EEEEETTTEEEEHHHHHHHHTT-----------TCBCTTTCCBSSCC
T ss_pred             cCCCCCCcccChhhcC---------CC----cEEecCCCChHHHHHHHHHHHc-----------CCcCcCcCccCCCC
Confidence            3456789999998752         11    1122569999999999999987           67999999998653

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.14  E-value=1.7e-11  Score=98.59  Aligned_cols=65  Identities=25%  Similarity=0.533  Sum_probs=41.7

Q ss_pred             cccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      +..|+||++.+...--.-..+.+..|...|  ..++|||.||..||.+||++           ..+||+||+++.++-
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-----------~~~CP~Cr~~~~~~~  103 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----------RQVCPLDNREWEFQK  103 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-----------CSBCSSSCSBCCEEE
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-----------CCcCcCCCCcceeec
Confidence            457999999875210000000001122222  23689999999999999998           689999999987653

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.6e-11  Score=91.10  Aligned_cols=53  Identities=25%  Similarity=0.669  Sum_probs=40.9

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      .++..+|+||++.+..         +   + ......|||.||..||.+||+.           ...||+||+++..
T Consensus        20 ~~~~~~C~IC~~~~~~---------~---~-~~~~l~C~H~fh~~Ci~~w~~~-----------~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFES---------R---Q-LLRVLPCNHEFHAKCVDKWLKA-----------NRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCB---------T---C-EEEEETTTEEEETTHHHHHHHH-----------CSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCC---------C---C-eEEEECCCCHhHHHHHHHHHHc-----------CCcCcCcCCcCCC
Confidence            3456789999998751         1   1 1122569999999999999988           5799999998764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.11  E-value=3.6e-11  Score=89.47  Aligned_cols=56  Identities=23%  Similarity=0.676  Sum_probs=42.5

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ..+...+|+||++.+..         +   .. .....|||.||..||.+|++.           ...||+||+++..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~---------~---~~-~~~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           11 HVGSGLECPVCKEDYAL---------G---ES-VRQLPCNHLFHDSCIVPWLEQ-----------HDSCPVCRKSLTGQN   66 (78)
T ss_dssp             TSSSSCCCTTTTSCCCT---------T---SC-EEECTTSCEEETTTTHHHHTT-----------TCSCTTTCCCCCCSC
T ss_pred             cCCCCCCCeeCCccccC---------C---CC-EEEeCCCCeecHHHHHHHHHc-----------CCcCcCcCCccCCcc
Confidence            34466799999998741         1   11 122579999999999999987           579999999987653

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.05  E-value=1e-10  Score=92.98  Aligned_cols=70  Identities=21%  Similarity=0.314  Sum_probs=43.6

Q ss_pred             cccccccccccccchhhc--cccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          209 QVECGICYAQFLPIDEEL--GAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~--~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      +.+|+||++.+.......  ......-|..+...++|||.||..||.+||+.-.. +.     ..+||+||+.+..+.
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~-~~-----~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-DG-----SLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-SS-----CCBCTTTCCBSSSCS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC-CC-----CCcCCCCCCccCCCC
Confidence            358999999985321100  00011122223235789999999999999964111 11     569999999887653

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.05  E-value=5.6e-11  Score=86.44  Aligned_cols=58  Identities=29%  Similarity=0.623  Sum_probs=42.6

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .++..+|+||++.+...   .  .++..    -....|||.||..||.+|++.           ...||+||+++..+
T Consensus         7 ~~~~~~C~IC~~~~~~~---~--~~~~~----~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEI---V--QNGRL----IVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHK   64 (71)
T ss_dssp             CTTCCBCTTTCCBHHHH---H--TTTCC----EEECTTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCCCC
T ss_pred             CCCCCCCcccChhhhcc---c--cccCC----eEeCCCCChHhHHHHHHHHHc-----------CCCCCCCCCccChh
Confidence            34567899999987511   0  01111    123789999999999999987           57999999998754

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.01  E-value=4e-11  Score=98.29  Aligned_cols=64  Identities=25%  Similarity=0.552  Sum_probs=0.4

Q ss_pred             cccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +..|+||++.+.....+-....+..+...|  ..++|+|.||..||.+||++           ..+||+||+++.++
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-----------~~~CP~Cr~~~~~~  113 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----------RQVCPLDNREWEFQ  113 (117)
T ss_dssp             C----------------------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-----------CCcCCCCCCeeeee
Confidence            458999999985210000000000112222  12589999999999999998           67999999997654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.00  E-value=6e-11  Score=84.31  Aligned_cols=55  Identities=31%  Similarity=0.647  Sum_probs=40.9

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ..+|+||++.+....+     .+..    ....+|||.||..||.+|+++           ...||+||+++..+
T Consensus         3 ~~~C~IC~~~~~~~~~-----~~~~----~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQ-----NGRL----IVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHH-----TTCC----EEEETTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCccc-----cCCC----EEeCCCCCchhHHHHHHHHHc-----------CCCCCCCCccCCcc
Confidence            4689999998752100     1111    123689999999999999998           57999999998754

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=6.6e-10  Score=83.76  Aligned_cols=60  Identities=23%  Similarity=0.443  Sum_probs=43.0

Q ss_pred             cCCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          204 ENNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       204 ~~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +..+...+|+||++.+..        ....|    ....|||.||..||.+|++.-.        ....||+||+++...
T Consensus        10 ~~~~~~~~C~IC~~~~~~--------~~~~~----~~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           10 DALREVLECPICMESFTE--------EQLRP----KLLHCGHTICRQCLEKLLASSI--------NGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCT--------TSSCE----EECSSSCEEEHHHHHHHHHHCS--------SCBCCTTTCCCBCCS
T ss_pred             hhccCCCCCccCCccccc--------cCCCe----EECCCCChhhHHHHHHHHHcCC--------CCcCCCCCCCcccch
Confidence            334456789999998751        11112    2268999999999999999721        136999999987654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.95  E-value=3.7e-10  Score=81.66  Aligned_cols=50  Identities=30%  Similarity=0.675  Sum_probs=39.6

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +...+|+||++.+.         +   |. +  ..+|||.||..||.+|++.           ..+||+||+++..
T Consensus         3 ~~~~~C~IC~~~~~---------~---~~-~--~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPS---------N---YS-M--ALPCLHAFCYVCITRWIRQ-----------NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCC---------S---CE-E--ETTTTEEESTTHHHHHHHH-----------SCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCcccc---------C---Cc-E--ecCCCCeeHHHHHHHHHhC-----------cCcCcCCChhhHh
Confidence            34568999999863         1   11 1  2679999999999999987           5799999999864

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=4.1e-10  Score=82.66  Aligned_cols=53  Identities=17%  Similarity=0.440  Sum_probs=41.5

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ......+|+||++.+.         +   |  +  ...|||.||..||.+|++.           ...||+||+++..+.
T Consensus        11 ~~~~~~~C~IC~~~~~---------~---~--~--~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           11 PSLTVPECAICLQTCV---------H---P--V--SLPCKHVFCYLCVKGASWL-----------GKRCALCRQEIPEDF   63 (71)
T ss_dssp             SSSSCCBCSSSSSBCS---------S---E--E--EETTTEEEEHHHHHHCTTC-----------SSBCSSSCCBCCHHH
T ss_pred             cCCCCCCCccCCcccC---------C---C--E--EccCCCHHHHHHHHHHHHC-----------CCcCcCcCchhCHhh
Confidence            3446678999999864         1   2  1  2579999999999999987           579999999987543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=1.8e-09  Score=79.39  Aligned_cols=51  Identities=20%  Similarity=0.478  Sum_probs=40.7

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +....|+||++.+.         +   |-   ....|||.||..||.+|++.           ...||+||+++..+
T Consensus        13 ~~~~~C~IC~~~~~---------~---p~---~~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           13 TPYILCSICKGYLI---------D---AT---TITECLHTFCKSCIVRHFYY-----------SNRCPKCNIVVHQT   63 (72)
T ss_dssp             CGGGSCTTTSSCCS---------S---CE---ECSSSCCEECHHHHHHHHHH-----------CSSCTTTCCCCCSS
T ss_pred             CCCCCCCCCChHHH---------C---cC---EECCCCCHHHHHHHHHHHHc-----------CCcCCCcCcccCcc
Confidence            45678999999874         1   21   12489999999999999987           57999999998754

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=1.3e-09  Score=83.37  Aligned_cols=56  Identities=21%  Similarity=0.446  Sum_probs=40.0

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCC-----CcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCS-----KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~-----h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      ++...+|.||++.+.+        +..    .  -..|+     |.||..||.+||..-.         ..+||+||.++
T Consensus        12 ~~~~~~C~IC~~~~~~--------~~~----l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~   68 (80)
T 2d8s_A           12 PSSQDICRICHCEGDD--------ESP----L--ITPCHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEF   68 (80)
T ss_dssp             CTTSCCCSSSCCCCCS--------SSC----E--ECSSSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBC
T ss_pred             CCCCCCCeEcCccccC--------CCe----e--EeccccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCee
Confidence            3456789999988641        111    1  14564     9999999999999710         24999999998


Q ss_pred             cccc
Q 022965          281 AVKI  284 (289)
Q Consensus       281 ~~~~  284 (289)
                      .++.
T Consensus        69 ~~~~   72 (80)
T 2d8s_A           69 IMET   72 (80)
T ss_dssp             CCCC
T ss_pred             ecCc
Confidence            7654

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=2.6e-09  Score=80.07  Aligned_cols=49  Identities=22%  Similarity=0.533  Sum_probs=40.0

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      .+....|+||+..+.         +   |  +  ...|||.||..||.+|++.           ...||+||+++.
T Consensus        12 ~~~~~~C~IC~~~~~---------~---p--~--~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQ---------N---P--V--VTKCRHYFCESCALEHFRA-----------TPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCC---------S---E--E--ECTTSCEEEHHHHHHHHHH-----------CSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhc---------C---e--e--EccCCCHhHHHHHHHHHHC-----------CCcCCCcCcccc
Confidence            345678999999874         1   2  1  2689999999999999987           579999999986

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=3.5e-09  Score=77.37  Aligned_cols=54  Identities=22%  Similarity=0.475  Sum_probs=40.6

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .+....|+||++.+.         +   |  +  ...|||.||..||.+|++..   +.     ...||+||+++..+
T Consensus        17 ~~~~~~C~IC~~~~~---------~---~--~--~~~CgH~fC~~Ci~~~~~~~---~~-----~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           17 LQEEVICPICLDILQ---------K---P--V--TIDCGHNFCLKCITQIGETS---CG-----FFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCBCTTTCSBCS---------S---E--E--ECTTCCEEEHHHHHHHCSSS---CS-----CCCCSSSCCCCCCC
T ss_pred             CccCCEeccCCcccC---------C---e--E--EcCCCChhhHHHHHHHHHcC---CC-----CCCCCCCCCcCCcc
Confidence            345678999999864         1   2  1  15899999999999999731   11     46999999998754

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=4.8e-10  Score=81.65  Aligned_cols=49  Identities=24%  Similarity=0.588  Sum_probs=40.1

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ....+|+||++.+.         +        ...+|||.||..||.+|++.           ...||+||+++...
T Consensus        13 ~~~~~C~IC~~~~~---------~--------~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           13 TDEEECCICMDGRA---------D--------LILPCAHSFCQKCIDKWSDR-----------HRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCSSSCCSCC---------S--------EEETTTEEECHHHHHHSSCC-----------CSSCHHHHHCTTCC
T ss_pred             CCCCCCeeCCcCcc---------C--------cccCCCCcccHHHHHHHHHC-----------cCcCCCcCCcccCC
Confidence            45678999999864         1        12679999999999999986           67999999998744

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.75  E-value=2.5e-09  Score=88.38  Aligned_cols=48  Identities=27%  Similarity=0.834  Sum_probs=38.9

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +..|+||++.+.         +   |  +  ...|||.||..||.+|++.           ..+||.||+++..+
T Consensus        53 ~~~C~iC~~~~~---------~---~--~--~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFI---------E---A--V--TLNCAHSFCSYCINEWMKR-----------KIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCS---------S---E--E--EETTSCEEEHHHHHHHTTT-----------CSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccC---------C---c--e--ECCCCCCccHHHHHHHHHc-----------CCcCCCCCCcCCCC
Confidence            347999999874         1   2  1  2579999999999999987           67899999998654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=9e-09  Score=74.25  Aligned_cols=51  Identities=22%  Similarity=0.523  Sum_probs=39.5

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +....|+||++.+.         +   |..    .+|||.||..||.+|++.   .       ...||.||+++..+
T Consensus        13 ~~~~~C~IC~~~~~---------~---p~~----~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLC---------S---PKQ----TECGHRFCESCMAALLSS---S-------SPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEES---------S---CCC----CSSSCCCCHHHHHHHHTT---S-------SCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhc---------C---eeE----CCCCCHHHHHHHHHHHHh---C-------cCCCCCCCcCCChh
Confidence            34578999999874         1   211    689999999999999963   1       46899999998754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.73  E-value=1.1e-08  Score=75.65  Aligned_cols=50  Identities=18%  Similarity=0.403  Sum_probs=38.0

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCC-CCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSS-CSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~-C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      .....|+||+..+.         +   |-.    .+ |||.||..||.+|++..   +      ...||.||+++.
T Consensus        13 ~~~~~C~IC~~~~~---------~---p~~----~~~CgH~fC~~Ci~~~~~~~---~------~~~CP~Cr~~~~   63 (74)
T 2yur_A           13 PDELLCLICKDIMT---------D---AVV----IPCCGNSYCDECIRTALLES---D------EHTCPTCHQNDV   63 (74)
T ss_dssp             CGGGSCSSSCCCCT---------T---CEE----CSSSCCEECTTHHHHHHHHS---S------SSCCSSSCCSSC
T ss_pred             CCCCCCcCCChHHh---------C---CeE----cCCCCCHHHHHHHHHHHHhc---C------CCcCCCCCCcCC
Confidence            45678999999874         1   211    45 99999999999999871   0      258999999853

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.73  E-value=8e-09  Score=80.20  Aligned_cols=48  Identities=29%  Similarity=0.701  Sum_probs=38.7

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      ...|+||++.+.         +   |..   ...|||.||..||.+|++.           ...||.||+++..
T Consensus        22 ~~~C~IC~~~~~---------~---p~~---~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFN---------I---AMI---IPQCSHNYCSLCIRKFLSY-----------KTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCS---------S---EEE---CTTTCCEEEHHHHHHHHTT-----------CCBCTTTCCBCCG
T ss_pred             CCCcccCChhhC---------C---cCE---ECCCCCHhhHHHHHHHHHC-----------CCCCCCCCCcCCh
Confidence            458999999874         1   211   1489999999999999987           5799999999875

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.72  E-value=5.5e-09  Score=81.87  Aligned_cols=50  Identities=28%  Similarity=0.757  Sum_probs=40.1

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCcccccccc-CCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLF-GNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~-g~CP~Cr~~i~~~  283 (289)
                      ....|+||++.+..            | ..|  ..|||.||..||.+|++.           . ..||.||.++...
T Consensus        21 ~~~~C~IC~~~~~~------------p-~~~--~~CgH~FC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           21 EVFRCFICMEKLRD------------A-RLC--PHCSKLCCFSCIRRWLTE-----------QRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHTBCTTTCSBCSS------------E-EEC--TTTCCEEEHHHHHHHHHH-----------TCSBCTTTCCBCCGG
T ss_pred             CCCCCccCCccccC------------c-ccc--CCCCChhhHHHHHHHHHH-----------CcCCCCCCCCcCCHH
Confidence            34589999998741            2 223  789999999999999998           3 5999999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.67  E-value=6.6e-09  Score=83.14  Aligned_cols=56  Identities=29%  Similarity=0.625  Sum_probs=41.1

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +..+|+||++.+..   ..  .++..+    ..++|||.||..||.+||+.           ..+||.||+++..+
T Consensus         6 ~~~~C~IC~~~~~~---~~--~~~~~~----~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            6 GTVSCPICMDGYSE---IV--QNGRLI----VSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHK   61 (133)
T ss_dssp             CSCBCTTTCCBHHH---HH--HTTCCE----EEETTCCEEEHHHHHHHHTT-----------CSBCTTTCCBCTTT
T ss_pred             CCCCCcccChhhhC---cc--ccccCe----EecCCCChhhHHHHHHHHHh-----------CCCCCCCCCcCccc
Confidence            45689999998741   10  011111    23789999999999999987           56999999988754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.64  E-value=3.8e-08  Score=73.10  Aligned_cols=56  Identities=27%  Similarity=0.546  Sum_probs=41.4

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +....|+||+..+.         +   |.    ...|||.||..||.+|++......     ....||+||+++...
T Consensus        17 ~~~~~C~IC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~~~~~~-----~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLK---------E---PV----SADCNHSFCRACITLNYESNRNTD-----GKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCS---------S---CE----ECTTSCCBCHHHHHHHHHHSBCTT-----SCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhC---------c---ce----eCCCCCHHHHHHHHHHHHhccCCC-----CCCCCCCCCCcCCHH
Confidence            35678999999874         1   21    257999999999999998732111     146899999998754

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.63  E-value=2.9e-08  Score=75.81  Aligned_cols=49  Identities=18%  Similarity=0.403  Sum_probs=37.9

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCC-CCCcchhhHHHHHHhhhccCccccccccCCCCCCCccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSS-CSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPV  280 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~-C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i  280 (289)
                      +....|+||+..+.         +   |-    ... |||.|+..||.+|+...   +      ...||.||+++
T Consensus        11 ~~~~~C~IC~~~~~---------~---p~----~~~~CgH~fC~~Ci~~~~~~~---~------~~~CP~Cr~~~   60 (92)
T 3ztg_A           11 PDELLCLICKDIMT---------D---AV----VIPCCGNSYCDECIRTALLES---D------EHTCPTCHQND   60 (92)
T ss_dssp             CTTTEETTTTEECS---------S---CE----ECTTTCCEECHHHHHHHHHHC---T------TCCCTTTCCSS
T ss_pred             CcCCCCCCCChhhc---------C---ce----ECCCCCCHHHHHHHHHHHHhc---C------CCcCcCCCCcC
Confidence            45678999999874         1   21    145 99999999999999861   0      24999999997

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.63  E-value=1.8e-08  Score=72.45  Aligned_cols=53  Identities=19%  Similarity=0.499  Sum_probs=38.6

Q ss_pred             ccccccccc-ccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYA-QFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~-~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +..|+||++ .+.         +   |...-...+|||.||..||.+|+..   .       ...||.||++++.+
T Consensus         3 ~~~C~IC~~~~~~---------~---~~~~~~~~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYR---------N---PSLKLMVNVCGHTLCESCVDLLFVR---G-------AGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHH---------C---SSCCEEECTTCCCEEHHHHHHHHHT---T-------SSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccC---------C---CccCeecCCCCCHhHHHHHHHHHHc---C-------CCcCCCCCCccccc
Confidence            457999999 654         1   2211112689999999999999875   1       36899999998643

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=3.8e-08  Score=73.10  Aligned_cols=56  Identities=20%  Similarity=0.455  Sum_probs=41.4

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +...+|+||+..+.         +   |.    ..+|||.||..||.+|++.......     ...||+||+++...
T Consensus        17 ~~~~~C~IC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~~~~~~~-----~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           17 KEEVTCPICLELLT---------Q---PL----SLDCGHSFCQACLTANHKKSMLDKG-----ESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCTTTCSCCS---------S---CB----CCSSSCCBCTTHHHHHHHHHHHTTS-----CCCCTTTCCSSCSS
T ss_pred             cCCCCCCCCCcccC---------C---ce----eCCCCCHHHHHHHHHHHHHhhcCCC-----CCcCCCCCCccCHH
Confidence            35678999999874         1   21    2579999999999999987321111     47999999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.61  E-value=7.7e-09  Score=82.78  Aligned_cols=58  Identities=29%  Similarity=0.624  Sum_probs=42.8

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ++...+|+||++.+....+     .+..+  +  ...|||.||..||.+||+.           ..+||+||+++..+
T Consensus        69 ~~~~~~C~iC~~~~~~~~~-----~~~~~--~--~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQ-----NGRLI--V--STECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHH-----TTCCE--E--EETTSBEEEHHHHHHHHHH-----------CSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCCccccccc-----cCcce--E--eCCCCChhhHHHHHHHHHc-----------CCCCCCCCCcCChh
Confidence            3456789999998752111     11211  2  2689999999999999998           67999999998754

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.59  E-value=1.9e-08  Score=79.34  Aligned_cols=50  Identities=22%  Similarity=0.555  Sum_probs=39.8

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ....|+||+..+..            |-.   ...|||.||..||.+|+..           ...||.||.++...
T Consensus        14 ~~~~C~IC~~~~~~------------p~~---~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFID------------ATT---IIECLHSFCKTCIVRYLET-----------SKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSS------------EEE---ETTTCCEEEHHHHHHHHTS-----------CSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhC------------cCE---eCCCCChhhHHHHHHHHHh-----------CCcCcCCCcccccc
Confidence            45689999998741            211   1489999999999999987           57999999998753

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.57  E-value=2.2e-08  Score=73.94  Aligned_cols=57  Identities=18%  Similarity=0.392  Sum_probs=41.6

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +....|+||++.+.         +   |.    ...|||.||..||.+|++......    .....||+||+++...
T Consensus        10 ~~~~~C~IC~~~~~---------~---p~----~l~CgH~fC~~Ci~~~~~~~~~~~----~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLT---------E---PL----SLDCGHSLCRACITVSNKEAVTSM----GGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECS---------S---CC----CCSSSCCCCHHHHSCCCCCCSSSC----CCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccC---------C---ee----ECCCCCHHHHHHHHHHHHhcccCC----CCCCcCCCCCCcCCHh
Confidence            35678999999874         1   21    257999999999999998622111    1256999999998754

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.56  E-value=3.6e-08  Score=77.47  Aligned_cols=51  Identities=22%  Similarity=0.574  Sum_probs=38.7

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ...|+||++.+.         +   |.    ...|||.||..||.+|+..-.+        ...||.||+++...
T Consensus        21 ~~~C~IC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIK---------E---PV----STKCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCS---------S---CC----BCTTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhc---------C---eE----ECCCCCHHHHHHHHHHHHhCCC--------CCCCcCCCCcCCHh
Confidence            457999999864         1   21    1579999999999999987210        24899999998754

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.56  E-value=3.4e-08  Score=79.76  Aligned_cols=49  Identities=18%  Similarity=0.463  Sum_probs=38.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      ....|+||+..+..            |  +  ...|||.||..||..|+..   .       ...||.||++++.
T Consensus        51 ~~~~C~IC~~~~~~------------p--~--~~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFR------------P--I--TTVCQHNVCKDCLDRSFRA---Q-------VFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSS------------E--E--ECTTSCEEEHHHHHHHHHT---T-------CCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcC------------c--E--EeeCCCcccHHHHHHHHhH---C-------cCCCCCCCccCCC
Confidence            34689999998741            2  1  2589999999999999984   0       3499999999865

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=8.1e-08  Score=68.44  Aligned_cols=47  Identities=23%  Similarity=0.504  Sum_probs=35.1

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC  276 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C  276 (289)
                      -+....|+||++.+.         +   |..    ..|||.||..||.+|++..  .+      ...||+|
T Consensus        17 ~~~~~~C~IC~~~~~---------~---p~~----~~CgH~fC~~Ci~~~~~~~--~~------~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQ---------K---PVT----IDCGHNFCLKCITQIGETS--CG------FFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCS---------S---CEE----CTTSSEECHHHHHHHHHHC--SS------CCCCSCC
T ss_pred             CccCCCCCcCCchhC---------C---eEE----eCCCCcchHHHHHHHHHcC--CC------CCcCcCC
Confidence            345678999999874         1   222    5899999999999999851  11      4589998

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.52  E-value=5.3e-08  Score=72.14  Aligned_cols=50  Identities=16%  Similarity=0.389  Sum_probs=39.4

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ....|+||++.+.         +   |  +.  ..|||.|+..||.+|++.   +       ...||.||+++...
T Consensus         7 ~~~~C~IC~~~~~---------~---P--v~--~~CgH~fc~~Ci~~~~~~---~-------~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            7 EYFRCPISLELMK---------D---P--VI--VSTGQTYERSSIQKWLDA---G-------HKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCS---------S---E--EE--ETTTEEEEHHHHHHHHTT---T-------CCBCTTTCCBCSSC
T ss_pred             ccCCCCCcccccc---------C---C--EE--cCCCCeecHHHHHHHHHH---C-------cCCCCCCcCCCChh
Confidence            4568999999874         1   2  22  479999999999999975   1       46899999998754

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=9.1e-08  Score=66.58  Aligned_cols=46  Identities=20%  Similarity=0.604  Sum_probs=34.9

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCC
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYC  276 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~C  276 (289)
                      +....|+||++.+.         +   |.    ..+|||.||..||.+|+..+..        ...||+|
T Consensus        13 ~~~~~C~IC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLK---------E---PV----IIECGHNFCKACITRWWEDLER--------DFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCS---------S---CC----CCSSCCCCCHHHHHHHTTSSCC--------SCCCSCC
T ss_pred             ccCCCCccCCcccC---------c---cE----eCCCCCccCHHHHHHHHHhcCC--------CCCCCCC
Confidence            45678999999874         1   21    2679999999999999875221        4799998

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.45  E-value=9.5e-08  Score=76.66  Aligned_cols=50  Identities=24%  Similarity=0.549  Sum_probs=39.7

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccC-CCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFG-NCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g-~CP~Cr~~i~~~  283 (289)
                      +....|+||+..+.            -|  +  ...|||.|+..||.+|++.           .+ .||.||.++...
T Consensus        16 ~~~~~C~IC~~~~~------------~p--~--~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALR------------EA--V--QTPCGHRFCKACIIKSIRD-----------AGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCS------------SE--E--ECTTSCEEEHHHHHHHHHH-----------HCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhc------------Ce--E--ECCcCChhhHHHHHHHHhh-----------CCCCCCCCCCCcCHH
Confidence            35578999999874            12  1  1579999999999999987           33 999999998754

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.44  E-value=9.6e-08  Score=86.58  Aligned_cols=52  Identities=21%  Similarity=0.614  Sum_probs=43.4

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ...+|.||++...             +++.|.+  |++.||..|+.+|+++    ++     ...||.|+++++..
T Consensus       179 ~i~~C~iC~~iv~-------------~g~~C~~--C~~~~H~~C~~~~~~~----~~-----~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLI-------------QGQSCET--CGIRMHLPCVAKYFQS----NA-----EPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCS-------------SCEECSS--SCCEECHHHHHHHTTT----CS-----SCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHh-------------CCcccCc--cChHHHHHHHHHHHHh----CC-----CCCCCCCCCCCCCC
Confidence            4678999999875             6789955  9999999999999987    11     35999999998765

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.41  E-value=1.3e-07  Score=79.76  Aligned_cols=50  Identities=28%  Similarity=0.563  Sum_probs=38.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      ....|+||+..+.         +   |- .+  ..|||.||..||.+|++.   .       ...||+||.++..
T Consensus        53 ~~~~C~IC~~~~~---------~---p~-~~--~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLK---------N---TM-TT--KECLHRFCADCIITALRS---G-------NKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCS---------S---EE-EE--TTTCCEEEHHHHHHHHHT---T-------CCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhh---------C---cC-Ee--CCCCChhHHHHHHHHHHh---C-------cCCCCCCCCcCCC
Confidence            3458999999874         1   21 12  589999999999999985   1       4689999999853

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.38  E-value=4e-07  Score=68.99  Aligned_cols=57  Identities=21%  Similarity=0.430  Sum_probs=40.1

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      .+++..|+||++.+..            ++..-....|||.|+..||..+++.   .       .+.||.||+++..+.
T Consensus         8 ~~~~~~CpICle~~~~------------~d~~~~p~~CGH~fC~~Cl~~~~~~---~-------~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEI------------DDINFFPCTCGYQICRFCWHRIRTD---E-------NGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCCBCTTTCCBCCT------------TTTTCCSSTTSCCCCHHHHHHHTTS---S-------CSBCTTTCCBCSSCS
T ss_pred             cccCCcCCccCccCcc------------ccccccccCCCCCcCHHHHHHHHhc---C-------CCCCCCCCCccCCCc
Confidence            3456789999997631            1111111369999999999998754   1       479999999987654

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.36  E-value=2e-07  Score=78.51  Aligned_cols=50  Identities=18%  Similarity=0.418  Sum_probs=39.3

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ....|.||+..+..            |.    ...|||.|+..||.+|++.   .       ...||.||+++...
T Consensus        77 ~~~~C~IC~~~~~~------------pv----~~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQ------------PV----TTECFHNVCKDCLQRSFKA---Q-------VFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSS------------EE----ECTTSCEEEHHHHHHHHHT---T-------CCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcC------------CE----EcCCCCchhHHHHHHHHHh---C-------CCcCCCCCccCCCC
Confidence            34689999998741            21    1689999999999999986   1       23899999998765

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.33  E-value=3e-07  Score=73.22  Aligned_cols=49  Identities=24%  Similarity=0.558  Sum_probs=38.8

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ...|+||+..+..            |..    .+|||.|+..||.+|++..          ...||.||.++...
T Consensus        23 ~~~C~IC~~~~~~------------p~~----~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           23 SISCQICEHILAD------------PVE----TSCKHLFCRICILRCLKVM----------GSYCPSCRYPCFPT   71 (116)
T ss_dssp             HTBCTTTCSBCSS------------EEE----CTTSCEEEHHHHHHHHHHT----------CSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcHhcC------------cEE----cCCCCcccHHHHHHHHhHC----------cCcCCCCCCCCCHh
Confidence            4689999998741            211    6899999999999999861          35899999998753

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.30  E-value=2.6e-07  Score=89.38  Aligned_cols=50  Identities=24%  Similarity=0.529  Sum_probs=39.4

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ..+|+||++.+.              +.+.  .+|||.||..||.+|+++   .       ...||.||+++....
T Consensus       332 ~~~C~ICle~~~--------------~pv~--lpCGH~FC~~Ci~~wl~~---~-------~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          332 FQLCKICAENDK--------------DVKI--EPCGHLMCTSCLTSWQES---E-------GQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSBCTTTSSSBC--------------CEEE--ETTCCEECHHHHHHHHHH---T-------CSBCTTTCCBCCEEE
T ss_pred             CCCCCccCcCCC--------------CeEE--eCCCChhhHHHHHHHHhc---C-------CCCCCCCCCccCCce
Confidence            368999998763              1122  789999999999999984   0       579999999987543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.30  E-value=9.3e-08  Score=76.04  Aligned_cols=50  Identities=20%  Similarity=0.598  Sum_probs=39.0

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      .....|+||+..+.         +   |.    ...|||.|+..||.+|+..   +       ...||.||++++.
T Consensus        13 ~~~~~C~iC~~~~~---------~---p~----~~~CgH~fC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILV---------E---PV----TLPCNHTLCKPCFQSTVEK---A-------SLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCS---------S---CE----ECTTSCEECHHHHCCCCCT---T-------TSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccC---------c---ee----EcCCCCHHhHHHHHHHHhH---C-------cCCCCCCCcccCc
Confidence            35678999999874         1   22    2589999999999999965   1       3689999999864

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.24  E-value=1.1e-06  Score=63.45  Aligned_cols=55  Identities=22%  Similarity=0.532  Sum_probs=38.3

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCC---cchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSK---AFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h---~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +++...|.||++..   +       +.+ ..-|   +|.+   .||..||.+||..-.         ..+||.|+.++.+
T Consensus         3 ~~~~~~CrIC~~~~---~-------~~l-~~PC---~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~~~   59 (60)
T 1vyx_A            3 DEDVPVCWICNEEL---G-------NER-FRAC---GCTGELENVHRSCLSTWLTISR---------NTACQICGVVYNT   59 (60)
T ss_dssp             TCSCCEETTTTEEC---S-------CCC-CCSC---CCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBCCC
T ss_pred             CCCCCEeEEeecCC---C-------Cce-ecCc---CCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCeeec
Confidence            45667899999862   1       111 1113   4655   999999999998611         3689999999876


Q ss_pred             c
Q 022965          283 K  283 (289)
Q Consensus       283 ~  283 (289)
                      |
T Consensus        60 r   60 (60)
T 1vyx_A           60 R   60 (60)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.21  E-value=4.5e-07  Score=63.87  Aligned_cols=51  Identities=24%  Similarity=0.474  Sum_probs=38.6

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      +++....|+||+..+.         +   |    ....|||.|+..||.+|              ...||+||+++....
T Consensus         2 ee~~~~~C~IC~~~~~---------~---p----~~l~CgH~fC~~Ci~~~--------------~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            2 EEFQFLRCQQCQAEAK---------C---P----KLLPCLHTLCSGCLEAS--------------GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CSCCCSSCSSSCSSCB---------C---C----SCSTTSCCSBTTTCSSS--------------SSSCSSCCSSSSCCS
T ss_pred             CcccCCCceEeCCccC---------C---e----EEcCCCCcccHHHHccC--------------CCCCCcCCcEeecCC
Confidence            3456678999999874         1   3    12679999999999762              368999999988754


Q ss_pred             c
Q 022965          285 S  285 (289)
Q Consensus       285 ~  285 (289)
                      .
T Consensus        52 ~   52 (56)
T 1bor_A           52 D   52 (56)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.15  E-value=1.6e-06  Score=66.19  Aligned_cols=50  Identities=6%  Similarity=0.008  Sum_probs=41.1

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ....|+||+..+.              |-+.  ..|||.|-+.||.+|+++           .++||.|+++++.+.
T Consensus        13 ~~~~CpI~~~~m~--------------dPV~--~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~~~   62 (85)
T 2kr4_A           13 DEFRDPLMDTLMT--------------DPVR--LPSGTVMDRSIILRHLLN-----------SPTDPFNRQMLTESM   62 (85)
T ss_dssp             TTTBCTTTCSBCS--------------SEEE--CTTSCEEEHHHHHHHHHH-----------CSBCTTTCCBCCGGG
T ss_pred             hheECcccCchhc--------------CCeE--CCCCCEECHHHHHHHHhc-----------CCCCCCCcCCCChHh
Confidence            4568999999975              2233  569999999999999997           689999999987653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.12  E-value=5.6e-07  Score=75.09  Aligned_cols=50  Identities=22%  Similarity=0.427  Sum_probs=38.7

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +....|+||+..+..            |  +  ...|||.|+..||.+|++.   .       ...||.||.++..
T Consensus        29 ~~~~~C~IC~~~~~~------------p--v--~~~CgH~FC~~Ci~~~~~~---~-------~~~CP~Cr~~~~~   78 (141)
T 3knv_A           29 EAKYLCSACRNVLRR------------P--F--QAQCGHRYCSFCLASILSS---G-------PQNCAACVHEGIY   78 (141)
T ss_dssp             CGGGBCTTTCSBCSS------------E--E--ECTTSCEEEHHHHHHHGGG---S-------CEECHHHHHTTCC
T ss_pred             CcCcCCCCCChhhcC------------c--E--ECCCCCccCHHHHHHHHhc---C-------CCCCCCCCCcccc
Confidence            356789999998741            3  1  1689999999999999985   1       2389999998743

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.09  E-value=7.3e-07  Score=71.36  Aligned_cols=46  Identities=24%  Similarity=0.603  Sum_probs=36.5

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCC-CCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNS-SCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~-~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ...|+||+..+.         +   |-    .. .|||.|+..||..|+.             ..||.||.++...
T Consensus        22 ~~~C~IC~~~~~---------~---pv----~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           22 LLRCSRCTNILR---------E---PV----CLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWIQ   68 (117)
T ss_dssp             TTSCSSSCSCCS---------S---CB----CCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSCS
T ss_pred             CCCCCCCChHhh---------C---cc----EeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCccc
Confidence            458999999874         1   21    14 8999999999999987             3899999998543

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.02  E-value=2.1e-06  Score=67.81  Aligned_cols=50  Identities=6%  Similarity=0.018  Sum_probs=40.8

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ....|+||+..+.              |-+.  ..|||.|-+.||.+||..           .++||.|+++++...
T Consensus        28 ~~~~CpI~~~~m~--------------dPV~--~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~~~   77 (100)
T 2kre_A           28 DEFRDPLMDTLMT--------------DPVR--LPSGTIMDRSIILRHLLN-----------SPTDPFNRQTLTESM   77 (100)
T ss_dssp             TTTBCTTTCSBCS--------------SEEE--ETTTEEEEHHHHHHHTTS-----------CSBCSSSCCBCCTTS
T ss_pred             HhhCCcCccCccc--------------CCeE--CCCCCEEchHHHHHHHHc-----------CCCCCCCCCCCChhh
Confidence            3568999999875              2233  569999999999999987           589999999987653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.01  E-value=3.1e-06  Score=66.56  Aligned_cols=50  Identities=14%  Similarity=0.098  Sum_probs=41.1

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCC-CcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCS-KAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~-h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ....|+||+..+.              |-+.  ..|| |.|-+.||.+||..           .++||.|+++++.+.
T Consensus        21 ~~~~CpI~~~~m~--------------dPV~--~~cG~htf~r~cI~~~l~~-----------~~~cP~~~~~l~~~~   71 (98)
T 1wgm_A           21 DEFLDPIMSTLMC--------------DPVV--LPSSRVTVDRSTIARHLLS-----------DQTDPFNRSPLTMDQ   71 (98)
T ss_dssp             TTTBCTTTCSBCS--------------SEEE--CTTTCCEEEHHHHHHHTTT-----------SCBCTTTCSBCCTTT
T ss_pred             HhcCCcCcccccc--------------CCeE--CCCCCeEECHHHHHHHHHh-----------CCCCCCCCCCCChhh
Confidence            3568999999875              2244  6799 99999999999997           579999999987653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.95  E-value=4.3e-06  Score=70.67  Aligned_cols=51  Identities=22%  Similarity=0.439  Sum_probs=39.9

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +....|+||+..+.            -|- .   ..|||.|...||.+|++.-          ...||.||.+++..
T Consensus        16 ~~~~~C~IC~~~~~------------~pv-~---~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALR------------EAV-Q---TPCGHRFCKACIIKSIRDA----------GHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCS------------SEE-E---CTTSCEEEHHHHHHHHHHH----------CSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhc------------CcE-E---CCCCCHHHHHHHHHHHHhC----------CCCCCCCccCcchh
Confidence            35578999999874            131 1   5799999999999999871          23999999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.88  E-value=7e-06  Score=73.06  Aligned_cols=49  Identities=10%  Similarity=0.192  Sum_probs=39.4

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccC-CCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFG-NCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g-~CP~Cr~~i~~~  283 (289)
                      ....|+||+..+.              +.+.  ..|||.|-..||.+|+..           .+ .||.|+++++.+
T Consensus       207 ~~~~c~i~~~~~~--------------dPv~--~~~gh~f~~~~i~~~~~~-----------~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          207 DYLCGKISFELMR--------------EPCI--TPSGITYDRKDIEEHLQR-----------VGHFNPVTRSPLTQE  256 (281)
T ss_dssp             STTBCTTTCSBCS--------------SEEE--CSSCCEEETTHHHHHHHH-----------TCSSCTTTCCCCCGG
T ss_pred             cccCCcCcCCHhc--------------CCeE--CCCCCEECHHHHHHHHHH-----------CCCCCcCCCCCCchh
Confidence            4568999999875              2233  679999999999999987           23 499999998754

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.85  E-value=5.9e-06  Score=59.82  Aligned_cols=52  Identities=15%  Similarity=0.324  Sum_probs=38.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ...+|.||++...              +.+-....|||. |=..|+..|.+.           .+.||+||++|.-.+
T Consensus         7 ~~~~C~IC~~~~~--------------~~~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CPiCR~~i~~~i   59 (64)
T 2vje_A            7 AIEPCVICQGRPK--------------NGCIVHGKTGHLMACFTCAKKLKKR-----------NKPCPVCRQPIQMIV   59 (64)
T ss_dssp             GGSCCTTTSSSCS--------------CEEEEETTEEEEEECHHHHHHHHHT-----------TCCCTTTCCCCCEEE
T ss_pred             CcCCCCcCCCCCC--------------CEEEECCCCCChhhHHHHHHHHHHc-----------CCcCCCcCcchhceE
Confidence            4568999998753              112112389999 568999999986           579999999986544

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.85  E-value=6e-06  Score=59.60  Aligned_cols=53  Identities=15%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      +...+|.||++...              +.+-...+|||. |=..|+..|.+.           .+.||+||++|.-.+
T Consensus         5 ~~~~~C~IC~~~~~--------------~~~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CPiCR~~i~~~i   58 (63)
T 2vje_B            5 NLLKPCSLCEKRPR--------------DGNIIHGRTGHLVTCFHCARRLKKA-----------GASCPICKKEIQLVI   58 (63)
T ss_dssp             GGGSBCTTTSSSBS--------------CEEEEETTEEEEEECHHHHHHHHHT-----------TCBCTTTCCBCCEEE
T ss_pred             CcCCCCcccCCcCC--------------CeEEEecCCCCHhHHHHHHHHHHHh-----------CCcCCCcCchhhceE
Confidence            34568999999742              111112489998 999999999876           579999999986544

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=97.79  E-value=4e-06  Score=62.14  Aligned_cols=47  Identities=19%  Similarity=0.473  Sum_probs=36.2

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      +...|.||++.+.              +.+  ..+|||. |...|+..|               ..||+||+++.-.+.
T Consensus        23 ~~~~C~iC~~~~~--------------~~~--~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~   70 (74)
T 4ic3_A           23 EEKLCKICMDRNI--------------AIV--FVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQK   70 (74)
T ss_dssp             HHTBCTTTSSSBC--------------CEE--EETTCCBCCCHHHHTTC---------------SBCTTTCCBCSEEEE
T ss_pred             cCCCCCCCCCCCC--------------CEE--EcCCCChhHHHHhhhcC---------------ccCCCcCcCccCcEE
Confidence            3458999999763              112  2689999 999999877               489999999876543

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=97.57  E-value=4.9e-05  Score=66.25  Aligned_cols=50  Identities=10%  Similarity=0.161  Sum_probs=40.2

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccC-CCCCCCccccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFG-NCPYCSEPVAVKI  284 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g-~CP~Cr~~i~~~~  284 (289)
                      ....|+||...+.              |.++  ..|||.|=..||.+||..           .| +||.|+++++...
T Consensus       105 ~~f~CPI~~elm~--------------DPV~--~~~Ghtfer~~I~~~l~~-----------~~~tcP~t~~~l~~~~  155 (179)
T 2f42_A          105 DYLCGKISFELMR--------------EPCI--TPSGITYDRKDIEEHLQR-----------VGHFDPVTRSPLTQDQ  155 (179)
T ss_dssp             GGGBCTTTCSBCS--------------SEEE--CTTSCEEEHHHHHHHHHH-----------TCSBCTTTCCBCCGGG
T ss_pred             HhhcccCccccCC--------------CCeE--CCCCCEECHHHHHHHHHh-----------CCCCCCCCcCCCChhh
Confidence            3468999999875              2344  579999999999999987           33 5999999987653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.55  E-value=3.8e-05  Score=59.42  Aligned_cols=56  Identities=16%  Similarity=0.354  Sum_probs=38.9

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCcc-cccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEP-VAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~-i~~~  283 (289)
                      ....|+||+..+.              +-+. .+.|||.|-..||.+||+...+.+.     ...||.  |++. ++..
T Consensus         6 ~~~~CPI~~~~~~--------------dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~-----~~~CP~tgc~~~~l~~~   64 (94)
T 2yu4_A            6 SGFTCPITKEEMK--------------KPVK-NKVCGHTYEEDAIVRMIESRQKRKK-----KAYCPQIGCSHTDIRKS   64 (94)
T ss_dssp             SCCBCTTTCSBCS--------------SEEE-ESSSCCEEEHHHHHHHHHHHHTTTC-----CBCCCSTTCCCCCBCGG
T ss_pred             cEeECcCcCchhc--------------CCEE-cCCCCCeecHHHHHHHHHHccCcCC-----CCCCCcCcCcccccCHh
Confidence            3467999999875              1233 2359999999999999987311111     248999  9876 6544

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=7.1e-05  Score=55.25  Aligned_cols=46  Identities=20%  Similarity=0.480  Sum_probs=34.7

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      ..+|.||++.+.         +   |    ...+|||. |...|+..               ...||+||+++.-.+.
T Consensus        25 ~~~C~IC~~~~~---------~---~----~~~pCgH~~~C~~C~~~---------------~~~CP~Cr~~i~~~~~   71 (75)
T 2ecg_A           25 EKLCKICMDRNI---------A---I----VFVPCGHLVTCKQCAEA---------------VDKCPMCYTVITFKQK   71 (75)
T ss_dssp             HHSCSSSCSSCC---------C---B----CCSSSCCCCBCHHHHHH---------------CSBCTTTCCBCCCCCB
T ss_pred             CCCCCcCCCCCC---------C---E----EEecCCCHHHHHHHhhC---------------CCCCccCCceecCcEE
Confidence            457999998753         1   1    23689999 99999942               3699999999876543

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.50  E-value=5e-05  Score=54.81  Aligned_cols=51  Identities=18%  Similarity=0.303  Sum_probs=40.9

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISI  286 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~~  286 (289)
                      ..|+||+..+.              |-++ ...|||.|=..||.+||+.           +|.||.++++++.+-.+
T Consensus         4 ~~CpIs~~~m~--------------dPV~-~~~sG~~yer~~I~~~l~~-----------~~~cP~t~~~L~~~~Li   54 (61)
T 2bay_A            4 MLCAISGKVPR--------------RPVL-SPKSRTIFEKSLLEQYVKD-----------TGNDPITNEPLSIEEIV   54 (61)
T ss_dssp             CCCTTTCSCCS--------------SEEE-ETTTTEEEEHHHHHHHHHH-----------HSBCTTTCCBCCGGGCE
T ss_pred             EEecCCCCCCC--------------CCEE-eCCCCcEEcHHHHHHHHHh-----------CCCCcCCcCCCChhhcE
Confidence            46999999874              2244 1389999999999999998           68999999999876543

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=0.00013  Score=53.51  Aligned_cols=50  Identities=18%  Similarity=0.547  Sum_probs=37.7

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ++...+|.||++...              +.+  ...|||. |-..|+..               ...||+||++|...+
T Consensus        12 ~~~~~~C~IC~~~~~--------------~~v--~~pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~~~   60 (68)
T 2ea5_A           12 EENSKDCVVCQNGTV--------------NWV--LLPCRHTCLCDGCVKY---------------FQQCPMCRQFVQESF   60 (68)
T ss_dssp             CCCSSCCSSSSSSCC--------------CCE--ETTTTBCCSCTTHHHH---------------CSSCTTTCCCCCCEE
T ss_pred             CCCCCCCCCcCcCCC--------------CEE--EECCCChhhhHHHHhc---------------CCCCCCCCcchhceE
Confidence            345678999998642              122  3789999 99999972               369999999987665


Q ss_pred             cc
Q 022965          285 SI  286 (289)
Q Consensus       285 ~~  286 (289)
                      ..
T Consensus        61 ~i   62 (68)
T 2ea5_A           61 AL   62 (68)
T ss_dssp             CC
T ss_pred             Ee
Confidence            44

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.23  E-value=0.00012  Score=56.07  Aligned_cols=56  Identities=16%  Similarity=0.478  Sum_probs=37.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCcc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEP  279 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~  279 (289)
                      ...+|+||++.+..            |+. -....|||.|-..||..+++.....+.   +..-.||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~------------~~~-~~l~~CgH~FC~~Cl~~~~~~~i~~g~---~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPV------------EQM-TTIAQCQCIFCTLCLKQYVELLIKEGL---ETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBG------------GGE-EEETTTTEEEEHHHHHHHHHHHHHHCS---CCCEECSCTTCSSC
T ss_pred             CCcCCcccCccccc------------ccc-eEcCCCCCcccHHHHHHHHHHHhhcCC---cccccCccccCCCC
Confidence            45689999998641            111 112469999999999999986321111   01348999  9998

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.00057  Score=63.06  Aligned_cols=52  Identities=19%  Similarity=0.513  Sum_probs=39.8

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCC--CCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPY--CSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~--Cr~~i~~~  283 (289)
                      ....|+||+.++..            |-.   ...|||.|=..||.+|++.-   .      ...||.  |+++++..
T Consensus       180 ~el~CPIcl~~f~D------------PVt---s~~CGHsFcR~cI~~~~~~~---~------~~~CPvtGCr~~l~~~  233 (267)
T 3htk_C          180 IELTCPITCKPYEA------------PLI---SRKCNHVFDRDGIQNYLQGY---T------TRDCPQAACSQVVSMR  233 (267)
T ss_dssp             CCSBCTTTSSBCSS------------EEE---ESSSCCEEEHHHHHHHSTTC---S------CEECSGGGCSCEECGG
T ss_pred             eeeECcCccCcccC------------Cee---eCCCCCcccHHHHHHHHHhC---C------CCCCCcccccCcCchh
Confidence            45689999999851            321   35899999999999999861   1      258999  99987654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=96.78  E-value=0.00024  Score=67.46  Aligned_cols=47  Identities=15%  Similarity=0.465  Sum_probs=36.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      ....|.||++.+.              +.+  ..+|||. |...|+..|               ..||+||.++.-.+.
T Consensus       294 ~~~~C~IC~~~~~--------------~~v--~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~~  341 (345)
T 3t6p_A          294 EERTCKVCMDKEV--------------SVV--FIPCGHLVVCQECAPSL---------------RKCPICRGIIKGTVR  341 (345)
T ss_dssp             TTCBCTTTSSSBC--------------CEE--EETTCCEEECTTTGGGC---------------SBCTTTCCBCCEEEE
T ss_pred             CCCCCCccCCcCC--------------ceE--EcCCCChhHhHHHHhcC---------------CcCCCCCCCccCeEE
Confidence            4568999999864              112  2689999 999999866               489999999876553

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=96.49  E-value=0.00051  Score=51.57  Aligned_cols=45  Identities=20%  Similarity=0.512  Sum_probs=34.0

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCc-chhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKA-FHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~-FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      ...|.||++...              +.+  ..+|||. |=..|+..|               ..||+||+++.-.+
T Consensus        18 ~~~C~IC~~~~~--------------~~v--~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~   63 (79)
T 2yho_A           18 AMLCMVCCEEEI--------------NST--FCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHVQ   63 (79)
T ss_dssp             HTBCTTTSSSBC--------------CEE--EETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEEE
T ss_pred             CCEeEEeCcccC--------------cEE--EECCCCHHHHHHHHHhc---------------CcCCCCCchhhCeE
Confidence            458999998753              112  2689999 889999653               39999999987654

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=96.00  E-value=0.031  Score=46.21  Aligned_cols=83  Identities=11%  Similarity=0.191  Sum_probs=61.3

Q ss_pred             HHHHHHHHHhcccee--ee-----ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCc---ccc-
Q 022965           17 RSVYSEIEEVGWEHL--VR-----LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYI---FNL-   80 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l--~~-----id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~---f~l-   80 (289)
                      .+|.+|+.++.-+..  +.     .+.++...++.+.-..     |....++|.+|.+||..||.+...=|.-   .++ 
T Consensus        25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~  104 (136)
T 2a7l_A           25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY  104 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCC
Confidence            899999999965433  22     2457888888887443     4789999999999999999987654531   111 


Q ss_pred             ------------ccCccccHHHHHHHHHHHH
Q 022965           81 ------------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 ------------~w~~~s~L~~i~~qF~~~l   99 (289)
                                  .|++..++..|+...+..|
T Consensus       105 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL  135 (136)
T 2a7l_A          105 SNGHICLSILTEDWSPALSVQSVCLSIISML  135 (136)
T ss_dssp             TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEchhcCCCCCCCCcHHHHHHHHHHHh
Confidence                        5999888888887766554

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=95.74  E-value=0.11  Score=42.72  Aligned_cols=86  Identities=12%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCcc--cc-
Q 022965           14 SFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIF--NL-   80 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f--~l-   80 (289)
                      .--.+|.+|+.++.-+..    +. .+.++....+.+.-..     |....++|.+|.+||..||.+...=|..+  ++ 
T Consensus        20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~   99 (136)
T 2h2y_A           20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVY   99 (136)
T ss_dssp             SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCC
Confidence            346899999999865432    22 2457888888887433     57899999999999999999986654312  11 


Q ss_pred             ------------ccCccccHHHHHHHHHHHH
Q 022965           81 ------------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 ------------~w~~~s~L~~i~~qF~~~l   99 (289)
                                  .|++..++..|+...+..|
T Consensus       100 ~~G~ICl~iL~~~WsP~~ti~~vL~si~sll  130 (136)
T 2h2y_A          100 SNGDICLSVLGDDYNPSLSISGLILSIISML  130 (136)
T ss_dssp             TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEECccccCCCCCCCcHHHHHHHHHHHH
Confidence                        5999888998888777665

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=95.66  E-value=0.087  Score=42.52  Aligned_cols=85  Identities=11%  Similarity=0.171  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCcc--cc---
Q 022965           16 SRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIF--NL---   80 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f--~l---   80 (289)
                      ..+|.+|+.++.-+..    +. .+.++...+..+.-..     |....++|.+|.+||..||.+...=|..+  ++   
T Consensus         8 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~   87 (125)
T 2fo3_A            8 NYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSN   87 (125)
T ss_dssp             -CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCC
Confidence            3589999999854432    22 2457888888887433     57889999999999999999986654312  11   


Q ss_pred             ----------ccCccccHHHHHHHHHHHHH
Q 022965           81 ----------KWSRKSRLKDLLQQFREHLE  100 (289)
Q Consensus        81 ----------~w~~~s~L~~i~~qF~~~le  100 (289)
                                .|++..++..|+...+..|.
T Consensus        88 G~iCl~iL~~~W~P~~~i~~vl~si~~ll~  117 (125)
T 2fo3_A           88 GDICLSLLGDDYNPSLSISGLVLSIISMLS  117 (125)
T ss_dssp             SBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             CEEEchhcCCCCCCCCcHHHHHHHHHHHHh
Confidence                      69998889988887777664

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=95.50  E-value=0.12  Score=43.99  Aligned_cols=93  Identities=17%  Similarity=0.365  Sum_probs=63.6

Q ss_pred             cccCCCChhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCC
Q 022965            6 CRESANSSSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVP   75 (289)
Q Consensus         6 ~~~~~~~~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP   75 (289)
                      .|+....+.--.+|.+|+.++.-+..     .-.+.++....+.+.-.     .|....++|.+|.+||..||.+...=|
T Consensus        13 ~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~   92 (166)
T 2ayv_A           13 GRENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTK   92 (166)
T ss_dssp             ------CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             ccccccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccC
Confidence            34444455567899999999854422     22345788888888843     367899999999999999998875444


Q ss_pred             Cccc-------------c--ccCccccHHHHHHHHHHHH
Q 022965           76 YIFN-------------L--KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        76 ~~f~-------------l--~w~~~s~L~~i~~qF~~~l   99 (289)
                      + |.             |  .|++..+|..|+...+..|
T Consensus        93 i-~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll  130 (166)
T 2ayv_A           93 I-YHPNINSQGAICLDILKDQWSPALTISKVLLSISSLL  130 (166)
T ss_dssp             C-CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             C-cCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHH
Confidence            2 11             1  6999888888877666555

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=95.31  E-value=0.11  Score=43.28  Aligned_cols=83  Identities=13%  Similarity=0.351  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965           16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------   79 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------   79 (289)
                      -.+|.+|+.++.-+..     .-.+.++......+.-.     .|....++|.+|.+||..||.+...=|. |+      
T Consensus         6 ~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~   84 (152)
T 2aak_A            6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRM-FHPNIYAD   84 (152)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CCTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCc-ccCCCCCC
Confidence            4789999999854432     22355688888888753     4678999999999999999998754332 11      


Q ss_pred             ---------cccCccccHHHHHHHHHHHH
Q 022965           80 ---------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ---------l~w~~~s~L~~i~~qF~~~l   99 (289)
                               -.|++..+|..|+...+..|
T Consensus        85 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll  113 (152)
T 2aak_A           85 GSICLDILQNQWSPIYDVAAILTSIQSLL  113 (152)
T ss_dssp             SBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred             CEEechhhcCCCCCCCcHHHHHHHHHHHH
Confidence                     16999888887776655544

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=95.21  E-value=0.17  Score=42.44  Aligned_cols=87  Identities=24%  Similarity=0.371  Sum_probs=63.7

Q ss_pred             ChhHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc--
Q 022965           12 SSSFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN--   79 (289)
Q Consensus        12 ~~~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--   79 (289)
                      ++..-.+|.+|+.+|.-+..    +. .+.++...+..+.-..     |....++|.+|.+||..||.+...-|. |+  
T Consensus        11 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPn   89 (158)
T 1zdn_A           11 PPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI-FHPN   89 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CCTT
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCc-ccCC
Confidence            55678899999999865432    22 3457888888887433     478899999999999999998765553 21  


Q ss_pred             -------------cccCccccHHHHHHHHHHHH
Q 022965           80 -------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 -------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                   -.|++..++..|+...+..|
T Consensus        90 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll  122 (158)
T 1zdn_A           90 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLL  122 (158)
T ss_dssp             BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHH
Confidence                         16999888887776655554

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=95.08  E-value=0.12  Score=43.84  Aligned_cols=86  Identities=21%  Similarity=0.359  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHHHHhccceee-----eecC-----CcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCc
Q 022965           13 SSFSRSVYSEIEEVGWEHLV-----RLSE-----DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYI   77 (289)
Q Consensus        13 ~~~y~~l~~Ei~~igw~~l~-----~id~-----~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~   77 (289)
                      .+=-.+|.+|+.++.-+...     -.+.     ++......+.-..     |....++|.+|.+||..||.+...-|. 
T Consensus         9 ~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i-   87 (163)
T 3rcz_B            9 SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL-   87 (163)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC-
Confidence            44568999999999766431     1222     6777888887444     588999999999999999998654332 


Q ss_pred             cc-------------c----ccCccccHHHHHHHHHHHH
Q 022965           78 FN-------------L----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 f~-------------l----~w~~~s~L~~i~~qF~~~l   99 (289)
                      |.             |    .|++..++..|+...+..|
T Consensus        88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll  126 (163)
T 3rcz_B           88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL  126 (163)
T ss_dssp             CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred             ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHH
Confidence            11             1    3999888888776655554

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=95.06  E-value=0.14  Score=44.25  Aligned_cols=89  Identities=16%  Similarity=0.301  Sum_probs=63.3

Q ss_pred             ChhHHHHHHHHHHHhccce--------eeeecCCcceEEEEEEe--CCC---------------CEEEEEEEeCCCCCCC
Q 022965           12 SSSFSRSVYSEIEEVGWEH--------LVRLSEDLKFLSFRVID--KKG---------------RVHCMEIQLDKNYPRS   66 (289)
Q Consensus        12 ~~~~y~~l~~Ei~~igw~~--------l~~id~~l~~i~l~~~D--~~~---------------R~H~l~i~l~~~yp~~   66 (289)
                      +..--.+|.+|+.+|.-+.        +.-.+.++....+.+.-  ...               ....++|.+|.+||..
T Consensus        25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~  104 (186)
T 1zuo_A           25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD  104 (186)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCC
Confidence            3455789999999986543        22245678888888873  221               6788999999999999


Q ss_pred             CCCccccCCCc-------------ccc---ccCccccHHHHHHHHHHHHH
Q 022965           67 PPSISADVPYI-------------FNL---KWSRKSRLKDLLQQFREHLE  100 (289)
Q Consensus        67 ~P~~~~dlP~~-------------f~l---~w~~~s~L~~i~~qF~~~le  100 (289)
                      ||.+..-=|.-             -.|   .|+|..++..|+...+..|.
T Consensus       105 PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~  154 (186)
T 1zuo_A          105 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLV  154 (186)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHc
Confidence            99886543421             012   59998899988887777663

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=94.97  E-value=0.13  Score=43.01  Aligned_cols=82  Identities=15%  Similarity=0.372  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcc--------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIF--------   78 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f--------   78 (289)
                      .+|.+|+.+|.-+..     .-.+.++...++.+.-.     .|....++|.+|.+||..||.+...=|. |        
T Consensus         8 ~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~G   86 (155)
T 1jat_A            8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLG   86 (155)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCC-CBTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeeccc-ccCCCCCCC
Confidence            689999999854422     22345688888888743     3578899999999999999998654332 1        


Q ss_pred             -------ccccCccccHHHHHHHHHHHH
Q 022965           79 -------NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        79 -------~l~w~~~s~L~~i~~qF~~~l   99 (289)
                             .=.|++..++..|+...+..|
T Consensus        87 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll  114 (155)
T 1jat_A           87 RICLDVLKTNWSPALQIRTVLLSIQALL  114 (155)
T ss_dssp             CBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             EEEchhhccCCCCCCCHHHHHHHHHHHH
Confidence                   116999888888877665554

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=94.96  E-value=0.12  Score=42.93  Aligned_cols=83  Identities=16%  Similarity=0.338  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965           16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------   79 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------   79 (289)
                      .++|.+|+.++.-+..     .-.+.++....+.+...     .|....++|.+|.+||..||.+...=|+ |+      
T Consensus         6 ~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~   84 (151)
T 4gpr_A            6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKV-YHPNINKN   84 (151)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCc-ccceECCC
Confidence            5799999999965432     22356788899998843     3578899999999999999998654442 11      


Q ss_pred             ---------cccCccccHHHHHHHHHHHH
Q 022965           80 ---------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ---------l~w~~~s~L~~i~~qF~~~l   99 (289)
                               -.|++..++..|+...+..|
T Consensus        85 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll  113 (151)
T 4gpr_A           85 GVICLDILKDQWSPALTLSRVLLSISSLL  113 (151)
T ss_dssp             CBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CEEEcccccCCCCCCCcHHHHHHHHHHHh
Confidence                     26999888888877666555

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=94.93  E-value=0.19  Score=42.11  Aligned_cols=84  Identities=21%  Similarity=0.341  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhccc-----ee---eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----c-
Q 022965           16 SRSVYSEIEEVGWE-----HL---VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I-   77 (289)
Q Consensus        16 y~~l~~Ei~~igw~-----~l---~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----~-   77 (289)
                      -.+|.+|+.+|.-+     ..   .-.+.++...++.+.-.     .|....++|.+|.+||..||.+...=|+    . 
T Consensus        10 ~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~   89 (159)
T 2bep_A           10 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS   89 (159)
T ss_dssp             HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCC
Confidence            47899999998542     11   22355788999888742     3578889999999999999998754432    0 


Q ss_pred             -----ccc-----ccCccccHHHHHHHHHHHH
Q 022965           78 -----FNL-----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 -----f~l-----~w~~~s~L~~i~~qF~~~l   99 (289)
                           +.+     .|++..++..|+...+..|
T Consensus        90 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll  121 (159)
T 2bep_A           90 SVTGAICLDILKDQWAAAMTLRTVLLSLQALL  121 (159)
T ss_dssp             TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEeChhhhccCCCCCcHHHHHHHHHHHH
Confidence                 001     4999888888877666655

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=94.88  E-value=0.18  Score=41.74  Aligned_cols=82  Identities=21%  Similarity=0.398  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc-------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN-------   79 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-------   79 (289)
                      .+|.+|+.++.-+..     .-.+.++...++.+.-.     .|....++|.+|.+||..||.+...=|. |+       
T Consensus         4 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~G   82 (149)
T 2r0j_A            4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI-YHPNIDKLG   82 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCC-CBTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCC-ccCCCCCCC
Confidence            589999999854422     22345688888888743     2578999999999999999998765442 11       


Q ss_pred             --------cccCccccHHHHHHHHHHHH
Q 022965           80 --------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 --------l~w~~~s~L~~i~~qF~~~l   99 (289)
                              -.|++..++..|+...+..|
T Consensus        83 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll  110 (149)
T 2r0j_A           83 RICLDILKDKWSPALQIRTVLLSIQALL  110 (149)
T ss_dssp             BBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred             EEechhcCCCCCCCCcHHHHHHHHHHHH
Confidence                    16999888888877666554

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=94.86  E-value=0.16  Score=42.43  Aligned_cols=82  Identities=17%  Similarity=0.342  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc-------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN-------   79 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-------   79 (289)
                      .+|.+|+.++.-+..     .-.+.++...+..+.-.     .|....++|.+|.+||..||.+...=|+ |+       
T Consensus         8 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~G   86 (154)
T 2c2v_B            8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-YHPNVDKLG   86 (154)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC-CCTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCc-ccCcCccCC
Confidence            689999999865432     22345788888888743     2578899999999999999998765442 11       


Q ss_pred             --------cccCccccHHHHHHHHHHHH
Q 022965           80 --------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 --------l~w~~~s~L~~i~~qF~~~l   99 (289)
                              -.|++..+|..|+...+..|
T Consensus        87 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll  114 (154)
T 2c2v_B           87 RICLDILKDKWSPALQIRTVLLSIQALL  114 (154)
T ss_dssp             BBCCHHHHTSCCTTCCHHHHHHHHHHHT
T ss_pred             eEEchhccCCCCCCCcHHHHHHHHHHHH
Confidence                    16999888888776555544

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=94.79  E-value=0.19  Score=42.23  Aligned_cols=84  Identities=14%  Similarity=0.260  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhcccee--e---eecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC--------
Q 022965           16 SRSVYSEIEEVGWEHL--V---RLSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--------   76 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l--~---~id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~--------   76 (289)
                      .++|.+|+.++.-+..  +   -.+. ++....+.+.-.     .|....++|.+|.+||..||.+...=|.        
T Consensus         5 ~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~   84 (164)
T 3h8k_A            5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPD   84 (164)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCC
Confidence            5789999999865432  2   2344 788999988843     3578889999999999999998644331        


Q ss_pred             -------cc------------ccccCccccHHHHHHHHHHHH
Q 022965           77 -------IF------------NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 -------~f------------~l~w~~~s~L~~i~~qF~~~l   99 (289)
                             ..            .=.|++..++..|+...+..|
T Consensus        85 G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll  126 (164)
T 3h8k_A           85 GRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML  126 (164)
T ss_dssp             SBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHH
T ss_pred             CcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHH
Confidence                   11            025999888888877666555

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=94.69  E-value=0.26  Score=41.65  Aligned_cols=87  Identities=17%  Similarity=0.338  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--c---
Q 022965           13 SSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--I---   77 (289)
Q Consensus        13 ~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~--~---   77 (289)
                      +.--.+|.+|+.++.-+..     .-.+.++....+.+.-..     |....++|.+|.+||..||.+...-|+  +   
T Consensus        18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~   97 (165)
T 2c4o_A           18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   97 (165)
T ss_dssp             HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence            4456899999999965432     223567888888887432     578899999999999999998765442  0   


Q ss_pred             ----c---cc--ccCccccHHHHHHHHHHHH
Q 022965           78 ----F---NL--KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 ----f---~l--~w~~~s~L~~i~~qF~~~l   99 (289)
                          +   .|  .|++..+|..|+...+..|
T Consensus        98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll  128 (165)
T 2c4o_A           98 SNGSICLDILRSQWSPALTISKVLLSICSLL  128 (165)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCeEeehhhcCCCCCcCcHHHHHHHHHHHH
Confidence                0   11  6999888888877666555

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=94.63  E-value=0.19  Score=42.47  Aligned_cols=83  Identities=12%  Similarity=0.332  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhccce----------------eee-ecCCcceEEEEEEeCC-------CCEEEEEEEeCCCCCCCCCCcc
Q 022965           16 SRSVYSEIEEVGWEH----------------LVR-LSEDLKFLSFRVIDKK-------GRVHCMEIQLDKNYPRSPPSIS   71 (289)
Q Consensus        16 y~~l~~Ei~~igw~~----------------l~~-id~~l~~i~l~~~D~~-------~R~H~l~i~l~~~yp~~~P~~~   71 (289)
                      -++|.+|+.+|.-+.                .+. .+.++....+.+.-..       |....++|.+|.+||..||.+.
T Consensus        10 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~   89 (167)
T 4ds2_A           10 NKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVR   89 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEE
T ss_pred             HHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEE
Confidence            468889988886544                122 3567889999988432       7889999999999999999987


Q ss_pred             ccCCCccc---------------cccCccccHHHHHHHHHHHH
Q 022965           72 ADVPYIFN---------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        72 ~dlP~~f~---------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                      ..-|. |+               -.|++..++..++-+....|
T Consensus        90 f~t~i-~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l  131 (167)
T 4ds2_A           90 FVTPV-YSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRV  131 (167)
T ss_dssp             ESSCC-CCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHH
T ss_pred             EeCCc-ccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHH
Confidence            66553 22               15998888887665544443

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=94.61  E-value=0.23  Score=41.08  Aligned_cols=84  Identities=18%  Similarity=0.385  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC--c------
Q 022965           16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--I------   77 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~--~------   77 (289)
                      -.+|.+|+.++.-+..     .-.+.++....+.+.-.     .|....++|.+|.+||..||.+...-|+  +      
T Consensus         6 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   85 (150)
T 1z2u_A            6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG   85 (150)
T ss_dssp             HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCC
Confidence            4789999999854422     22345688888888732     3578899999999999999998765442  0      


Q ss_pred             ------cccccCccccHHHHHHHHHHHH
Q 022965           78 ------FNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 ------f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                            +.-.|++..++..|+...+..|
T Consensus        86 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll  113 (150)
T 1z2u_A           86 SICLDILRSQWSPALTISKVLLSICSLL  113 (150)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             eEeeccccCCCCCCCCHHHHHHHHHHHh
Confidence                  0116999888888877666555

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=94.61  E-value=0.27  Score=41.90  Aligned_cols=91  Identities=18%  Similarity=0.269  Sum_probs=64.4

Q ss_pred             CCCChhHHHHHHHHHHHhcccee--ee---ec-CCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-
Q 022965            9 SANSSSFSRSVYSEIEEVGWEHL--VR---LS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-   76 (289)
Q Consensus         9 ~~~~~~~y~~l~~Ei~~igw~~l--~~---id-~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~-   76 (289)
                      ++.......+|.+|+.+|.-+..  ++   .+ .++....+.+.-..     |....++|.+|.+||..||.+...=|+ 
T Consensus        12 ~~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~   91 (172)
T 2awf_A           12 SGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW   91 (172)
T ss_dssp             -CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence            45566778899999999854432  22   34 47888888887543     678999999999999999998654442 


Q ss_pred             -------------ccc-------------cccCccccHHHHHHHHHHHH
Q 022965           77 -------------IFN-------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 -------------~f~-------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                   .+.             -.|++..+|..|+...+..|
T Consensus        92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll  140 (172)
T 2awf_A           92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  140 (172)
T ss_dssp             CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHH
Confidence                         000             15999888888877666555

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=94.50  E-value=0.28  Score=42.60  Aligned_cols=84  Identities=20%  Similarity=0.330  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhccce--------eeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----c-
Q 022965           16 SRSVYSEIEEVGWEH--------LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I-   77 (289)
Q Consensus        16 y~~l~~Ei~~igw~~--------l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----~-   77 (289)
                      -++|.+|+.+|.-+.        +.-.+.++......+.-.     .|....++|.+|.+||..||.+...=|+    . 
T Consensus         7 ~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   86 (201)
T 3k9o_A            7 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS   86 (201)
T ss_dssp             HHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCc
Confidence            478999999986541        223456799999999843     3578999999999999999988654332    0 


Q ss_pred             -----c-----ccccCccccHHHHHHHHHHHH
Q 022965           78 -----F-----NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 -----f-----~l~w~~~s~L~~i~~qF~~~l   99 (289)
                           +     .=.|++..+|..|+...+..|
T Consensus        87 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll  118 (201)
T 3k9o_A           87 SVTGAICLDILKDQWAAAMTLRTVLLSLQALL  118 (201)
T ss_dssp             TTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCeeeCcccccCCCCCCCHHHHHHHHHHHh
Confidence                 0     116999888887776555544

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=94.38  E-value=0.31  Score=40.31  Aligned_cols=83  Identities=27%  Similarity=0.417  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcccee-----eeecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----c----
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----I----   77 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----~----   77 (289)
                      .+|.+|+.++.-+..     .-.+. ++...+..+.-.     .|....++|.+|.+||..||.+...=|.    .    
T Consensus         4 ~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~   83 (149)
T 1fxt_A            4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT   83 (149)
T ss_dssp             HHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSS
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCC
Confidence            589999999854432     22344 788888888742     3578899999999999999998754432    0    


Q ss_pred             --ccc-----ccCccccHHHHHHHHHHHH
Q 022965           78 --FNL-----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 --f~l-----~w~~~s~L~~i~~qF~~~l   99 (289)
                        +.+     .|++..++..|+...+..|
T Consensus        84 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll  112 (149)
T 1fxt_A           84 GAICLDILKNAWSPVITLKSALISLQALL  112 (149)
T ss_dssp             CCBCCHHHHTSCCTTCCHHHHHHHHHHHH
T ss_pred             CeEeCCcCCCCCCCCCcHHHHHHHHHHHH
Confidence              001     5998888888777655544

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=94.32  E-value=0.29  Score=40.77  Aligned_cols=85  Identities=14%  Similarity=0.257  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc----
Q 022965           14 SFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN----   79 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~----   79 (289)
                      .--.+|.+|+.+|.-+..    +. .+.++....+.+.-.     .|....++|.+|.+||..||.+...=|. |+    
T Consensus         9 ~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~   87 (156)
T 2e2c_A            9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC-WHPNVD   87 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CBTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCc-ccCCCc
Confidence            345899999999864422    12 344788888888743     3678899999999999999998765442 21    


Q ss_pred             -----------cccCccccHHHHHHHHHHHH
Q 022965           80 -----------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 -----------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                 -.|++..++..|+...+..|
T Consensus        88 ~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll  118 (156)
T 2e2c_A           88 QSGNICLDILKENWTASYDVRTILLSLQSLL  118 (156)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHT
T ss_pred             cCceEECccccccCCCCCcHHHHHHHHHHHH
Confidence                       15999888888877655544

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=94.30  E-value=0.27  Score=40.93  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcccee--e---e-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--------
Q 022965           16 SRSVYSEIEEVGWEHL--V---R-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--------   76 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l--~---~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~--------   76 (289)
                      -.+|.+|+.++.-+..  +   . .+.++...++.+. ..     |....++|.+|.+||..||.+...=|.        
T Consensus         6 ~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~   84 (155)
T 1wzv_A            6 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN   84 (155)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCC
Confidence            3689999999854432  1   2 2457888888887 44     367889999999999999998654442        


Q ss_pred             ------cc-ccccCccccHHHHHHHHHHHH
Q 022965           77 ------IF-NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ------~f-~l~w~~~s~L~~i~~qF~~~l   99 (289)
                            .+ .=.|++..+|..|+...+..|
T Consensus        85 G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll  114 (155)
T 1wzv_A           85 GQICLPIISSENWKPCTKTCQVLEALNVLV  114 (155)
T ss_dssp             CBCCCGGGCTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CeEeecCCCccCCCCCCcHHHHHHHHHHHH
Confidence                  00 126998888888777665554

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=94.25  E-value=0.13  Score=43.14  Aligned_cols=84  Identities=20%  Similarity=0.375  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhccceee----e-ec-----CCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----
Q 022965           16 SRSVYSEIEEVGWEHLV----R-LS-----EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----   76 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l~----~-id-----~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----   76 (289)
                      ..+|.+|+.++.-+...    . .+     .++......+.-..     |....++|.+|.+||..||.+...-+.    
T Consensus         6 ~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   85 (157)
T 2gjd_A            6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPN   85 (157)
T ss_dssp             HHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCC
Confidence            47899999998755431    1 11     25777777776432     567889999999999999998754332    


Q ss_pred             ----------cccc--ccCccccHHHHHHHHHHHH
Q 022965           77 ----------IFNL--KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ----------~f~l--~w~~~s~L~~i~~qF~~~l   99 (289)
                                .+.-  .|++..+|..|+...+..|
T Consensus        86 v~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll  120 (157)
T 2gjd_A           86 VYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL  120 (157)
T ss_dssp             BCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHH
Confidence                      0111  4999888888777655554

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=94.21  E-value=0.23  Score=43.24  Aligned_cols=87  Identities=16%  Similarity=0.329  Sum_probs=61.9

Q ss_pred             hhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC------
Q 022965           13 SSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY------   76 (289)
Q Consensus        13 ~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~------   76 (289)
                      +.--.+|.+|+.+|.-+..     .-.+.++....+.+....     |....++|.+|.+||..||.|...=|+      
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~  126 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN  126 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence            3457899999999865432     123557888888887433     588999999999999999998654332      


Q ss_pred             --------ccccccCccccHHHHHHHHHHHH
Q 022965           77 --------IFNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 --------~f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                              .+.-.|++..+|..|+...+..|
T Consensus       127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll  157 (194)
T 3bzh_A          127 SQGVICLDILKDNWSPALTISKVLLSICSLL  157 (194)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCceechhhhccCCCcCcHHHHHHHHHHHH
Confidence                    00116999888888876655554

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=94.15  E-value=0.32  Score=41.36  Aligned_cols=83  Identities=13%  Similarity=0.345  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965           16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN------   79 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------   79 (289)
                      -.+|.+|+.+|.-+..     .-.+.++...+..+.-..     |....++|.+|.+||..||.+...=|+ |+      
T Consensus         6 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i-~HPNI~~~   84 (169)
T 1ayz_A            6 RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYAN   84 (169)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CCTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCC-ccCCCCCC
Confidence            4799999999864432     223556888888887432     578899999999999999998754432 11      


Q ss_pred             ---------cccCccccHHHHHHHHHHHH
Q 022965           80 ---------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ---------l~w~~~s~L~~i~~qF~~~l   99 (289)
                               -.|++..+|..|+...+..|
T Consensus        85 G~ICl~iL~~~WsP~~~i~~vL~si~~ll  113 (169)
T 1ayz_A           85 GEICLDILQNRWTPTYDVASILTSIQSLF  113 (169)
T ss_dssp             SBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CeEeehhhccCCCCcCcHHHHHHHHHHHH
Confidence                     15999888887776554443

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=94.15  E-value=0.36  Score=42.80  Aligned_cols=91  Identities=18%  Similarity=0.238  Sum_probs=63.5

Q ss_pred             CCCChhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--
Q 022965            9 SANSSSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--   76 (289)
Q Consensus         9 ~~~~~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~--   76 (289)
                      ....+.--.+|.+|+.+|.-+..     .-.+.++...+..+.-..     |....++|.+|.+||..||.+...=|+  
T Consensus        18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           18 YFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            33344557899999999865422     223567999998887433     578999999999999999998754432  


Q ss_pred             --c------ccc-----ccCccccHHHHHHHHHHHH
Q 022965           77 --I------FNL-----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 --~------f~l-----~w~~~s~L~~i~~qF~~~l   99 (289)
                        .      +.|     .|+|..+|..|+...+..|
T Consensus        98 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL  133 (216)
T 2pwq_A           98 PNISSQTGAICLDVLKNEWSPALTIRTALLSIQALL  133 (216)
T ss_dssp             TTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHH
Confidence              0      011     4998888887776655554

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=94.00  E-value=0.22  Score=42.88  Aligned_cols=87  Identities=14%  Similarity=0.205  Sum_probs=60.8

Q ss_pred             ChhHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc--
Q 022965           12 SSSFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN--   79 (289)
Q Consensus        12 ~~~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--   79 (289)
                      ...--.+|.+|+.+|.-+..    +. .+.++......+.-..     |....++|.+|.+||..||.+...=|. |+  
T Consensus        28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i-~HPN  106 (179)
T 1i7k_A           28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPN  106 (179)
T ss_dssp             --CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCC-CSTT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCC-ccCc
Confidence            34457899999999865422    12 3446777787877433     578999999999999999998765443 21  


Q ss_pred             -------------cccCccccHHHHHHHHHHHH
Q 022965           80 -------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 -------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                   -.|++..+|..|+...+..|
T Consensus       107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll  139 (179)
T 1i7k_A          107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLL  139 (179)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHH
Confidence                         15999888888776655544

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=93.90  E-value=0.24  Score=41.72  Aligned_cols=89  Identities=18%  Similarity=0.307  Sum_probs=61.1

Q ss_pred             CCChhHHHHHHHHHHHhcccee----ee-e-cCCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCccc
Q 022965           10 ANSSSFSRSVYSEIEEVGWEHL----VR-L-SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN   79 (289)
Q Consensus        10 ~~~~~~y~~l~~Ei~~igw~~l----~~-i-d~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~   79 (289)
                      ...+.--.+|.+|+.+|.-+..    +. . +.++....+.+-..    .|....++|.+|.+||..||.+...-|+ |+
T Consensus        10 ~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~H   88 (167)
T 3fn1_B           10 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI-WH   88 (167)
T ss_dssp             CCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCC-CC
T ss_pred             cchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCc-cc
Confidence            3455667899999999976533    22 2 23577777777432    2577889999999999999998654332 11


Q ss_pred             -------------c--------ccCccccHHHHHHHHHHHH
Q 022965           80 -------------L--------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 -------------l--------~w~~~s~L~~i~~qF~~~l   99 (289)
                                   |        .|++..++..|+...+.+|
T Consensus        89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll  129 (167)
T 3fn1_B           89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLF  129 (167)
T ss_dssp             SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTT
T ss_pred             CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence                         1        5999888887776555543

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=93.75  E-value=0.25  Score=41.04  Aligned_cols=82  Identities=17%  Similarity=0.379  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhcccee-----eee-cCCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCcc--------
Q 022965           17 RSVYSEIEEVGWEHL-----VRL-SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIF--------   78 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~i-d~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f--------   78 (289)
                      .+|.+|+.+|.-+..     +.. +.++....+.+.-.    .|....++|.+|.+||..||.+...=|. |        
T Consensus         5 ~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~G   83 (154)
T 1c4z_D            5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKI-YHPNIDEKG   83 (154)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCC-CCTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCC-ccccCCCCC
Confidence            478999999865432     222 34688888888621    2567889999999999999998764442 1        


Q ss_pred             -----cc---ccCccccHHHHHHHHHHHH
Q 022965           79 -----NL---KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        79 -----~l---~w~~~s~L~~i~~qF~~~l   99 (289)
                           .|   .|++..++..|+...+..|
T Consensus        84 ~iCl~iL~~~~W~p~~~i~~vl~~i~~ll  112 (154)
T 1c4z_D           84 QVCLPVISAENWKPATKTDQVIQSLIALV  112 (154)
T ss_dssp             BBCCTTTSSSSCCTTCCHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence                 11   5999888887777655544

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=93.69  E-value=0.26  Score=41.45  Aligned_cols=84  Identities=27%  Similarity=0.470  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhccce-e----eee-c-C--CcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-----
Q 022965           16 SRSVYSEIEEVGWEH-L----VRL-S-E--DLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-----   76 (289)
Q Consensus        16 y~~l~~Ei~~igw~~-l----~~i-d-~--~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~-----   76 (289)
                      -.+|.+|+.++.-+. .    +.. + .  ++......+.-..     |....++|.+|.+||..||.+...=|+     
T Consensus        23 ~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV  102 (156)
T 2q0v_A           23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCV  102 (156)
T ss_dssp             HHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTB
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCC
Confidence            479999999997652 1    222 2 2  3888888888433     578999999999999999998654332     


Q ss_pred             ----cc---cc----ccCccccHHHHHHHHHHHH
Q 022965           77 ----IF---NL----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ----~f---~l----~w~~~s~L~~i~~qF~~~l   99 (289)
                          .+   .+    .|++..+|..|+...+..|
T Consensus       103 ~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll  136 (156)
T 2q0v_A          103 DNCGRVIKNNLHILKNWNRNYTIETILISLRQEM  136 (156)
T ss_dssp             CTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHT
T ss_pred             ccCCeEehhhcccccCCCCcCcHHHHHHHHHHHH
Confidence                11   11    6999888888777655554

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=93.54  E-value=0.27  Score=41.30  Aligned_cols=84  Identities=21%  Similarity=0.351  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcccee----ee-e-----cCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcc-
Q 022965           15 FSRSVYSEIEEVGWEHL----VR-L-----SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIF-   78 (289)
Q Consensus        15 ~y~~l~~Ei~~igw~~l----~~-i-----d~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f-   78 (289)
                      --.+|.+|+.+|.-+..    +. .     +.++...++.+.-.     .|....++|.+|.+||..||.+...-|. | 
T Consensus         8 a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~H   86 (161)
T 2grr_A            8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FH   86 (161)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CS
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCc-cc
Confidence            45799999999865542    11 1     14677778888742     3578899999999999999998765442 1 


Q ss_pred             ------------cc----ccCccccHHHHHHHHHHHH
Q 022965           79 ------------NL----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        79 ------------~l----~w~~~s~L~~i~~qF~~~l   99 (289)
                                  .|    .|++..+|..|+...+..|
T Consensus        87 Pnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll  123 (161)
T 2grr_A           87 PNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL  123 (161)
T ss_dssp             TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHH
Confidence                        11    4999888888777655544

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=93.46  E-value=0.53  Score=39.52  Aligned_cols=85  Identities=12%  Similarity=0.344  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHhccceeeee----cCCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965           14 SFSRSVYSEIEEVGWEHLVRL----SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------   79 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l~~i----d~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------   79 (289)
                      .--.+|.+|+.++.-..-+++    +.++....+.+--.    .|....++|.+|.+||..||.+...-|. |+      
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i-~HPnv~~~   84 (160)
T 1y8x_A            6 AAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV-YHPNIDLE   84 (160)
T ss_dssp             HHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCC-CBTTBCTT
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCC-ccCcCCCC
Confidence            456899999999842222322    35688877776322    1467889999999999999998765442 11      


Q ss_pred             ---------cccCccccHHHHHHHHHHHH
Q 022965           80 ---------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ---------l~w~~~s~L~~i~~qF~~~l   99 (289)
                               -.|++..++..|+...+..|
T Consensus        85 G~iCl~iL~~~W~p~~~i~~vL~~i~~ll  113 (160)
T 1y8x_A           85 GNVCLNILREDWKPVLTINSIIYGLQYLF  113 (160)
T ss_dssp             CBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CeEEcccchhhccCCCCHHHHHHHHHHHH
Confidence                     15999888888777665544

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=93.46  E-value=0.56  Score=39.34  Aligned_cols=84  Identities=17%  Similarity=0.338  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcccee--e---eec-CCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--------
Q 022965           16 SRSVYSEIEEVGWEHL--V---RLS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--------   76 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l--~---~id-~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~--------   76 (289)
                      -.+|.+|+.+|.-+..  +   -.+ .++......+.-..     |....++|.+|.+||..||.+...=|+        
T Consensus         6 ~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~   85 (165)
T 2ucz_A            6 QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPN   85 (165)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCC
Confidence            4789999999865432  2   234 47888888887543     578899999999999999988643332        


Q ss_pred             ------cc-------------ccccCccccHHHHHHHHHHHH
Q 022965           77 ------IF-------------NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ------~f-------------~l~w~~~s~L~~i~~qF~~~l   99 (289)
                            .+             .=.|++..++..|+...+..|
T Consensus        86 G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll  127 (165)
T 2ucz_A           86 GEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML  127 (165)
T ss_dssp             SBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHH
T ss_pred             CcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHH
Confidence                  00             125998888888777666554

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=93.38  E-value=0.75  Score=37.54  Aligned_cols=83  Identities=19%  Similarity=0.366  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhccce-e----eee-c-C--CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC------
Q 022965           17 RSVYSEIEEVGWEH-L----VRL-S-E--DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY------   76 (289)
Q Consensus        17 ~~l~~Ei~~igw~~-l----~~i-d-~--~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~------   76 (289)
                      .+|.+|+.++.-+. .    +.. + .  ++...+..+.-.     .|....++|.+|.+||..||.+...=|+      
T Consensus         9 ~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   88 (138)
T 1jat_B            9 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN   88 (138)
T ss_dssp             HHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBC
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEe
Confidence            69999999996652 2    223 2 2  377888888733     2578999999999999999988643322      


Q ss_pred             ----cc--cc----ccCccccHHHHHHHHHHHH
Q 022965           77 ----IF--NL----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ----~f--~l----~w~~~s~L~~i~~qF~~~l   99 (289)
                          ..  .|    .|++..++..|+...+..|
T Consensus        89 ~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll  121 (138)
T 1jat_B           89 PTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM  121 (138)
T ss_dssp             TTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEeeecccCCCCCCcCcHHHHHHHHHHHH
Confidence                11  11    6998888888877666555

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=93.24  E-value=0.46  Score=40.76  Aligned_cols=86  Identities=19%  Similarity=0.339  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHhcccee----ee-e-cCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC------
Q 022965           14 SFSRSVYSEIEEVGWEHL----VR-L-SEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY------   76 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l----~~-i-d~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~------   76 (289)
                      .--++|.+|+.+|.-+..    +. . +.++....+.+.-.     .|....++|.+|.+||..||.+...=|.      
T Consensus         7 ~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   86 (183)
T 3rz3_A            7 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY   86 (183)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCC
Confidence            346899999999865543    22 2 34688889988732     3578889999999999999998654332      


Q ss_pred             --------ccc-------------cccCccccHHHHHHHHHHHH
Q 022965           77 --------IFN-------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 --------~f~-------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                              .+.             -.|++..++..|+...+.+|
T Consensus        87 ~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll  130 (183)
T 3rz3_A           87 ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL  130 (183)
T ss_dssp             TTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHH
T ss_pred             CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHH
Confidence                    011             25999888888877666555

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=93.19  E-value=0.49  Score=44.54  Aligned_cols=91  Identities=21%  Similarity=0.357  Sum_probs=64.6

Q ss_pred             CCCChhHHHHHHHHHHHhcccee--------e-eecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccC
Q 022965            9 SANSSSFSRSVYSEIEEVGWEHL--------V-RLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADV   74 (289)
Q Consensus         9 ~~~~~~~y~~l~~Ei~~igw~~l--------~-~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dl   74 (289)
                      +..++.-..+|.+|+.+|.-+..        + -.+.++...++.+.-..     |....++|.+|.+||..||.|...-
T Consensus        71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T  150 (323)
T 3ceg_A           71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET  150 (323)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence            44567788999999999864422        1 13557888888887543     4788999999999999999998655


Q ss_pred             CC----ccc-------------c---------ccCccc-cHHHHHHHHHHHH
Q 022965           75 PY----IFN-------------L---------KWSRKS-RLKDLLQQFREHL   99 (289)
Q Consensus        75 P~----~f~-------------l---------~w~~~s-~L~~i~~qF~~~l   99 (289)
                      |.    .|+             |         .|+|.. +|..|+...+..|
T Consensus       151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL  202 (323)
T 3ceg_A          151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLI  202 (323)
T ss_dssp             STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHT
T ss_pred             cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHH
Confidence            41    111             1         588865 7887776655554

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=93.16  E-value=0.69  Score=39.29  Aligned_cols=86  Identities=16%  Similarity=0.223  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----c--
Q 022965           14 SFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I--   77 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----~--   77 (289)
                      .-..+|.+|+.+|.-+..     .-.+.++....+.+.-..     |....++|.+|.+||..||.+...=|+    .  
T Consensus        23 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~  102 (169)
T 1yrv_A           23 RAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP  102 (169)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccC
Confidence            346899999999854322     234567888898887433     578999999999999999998754432    1  


Q ss_pred             ----c-----c--cccCccccHHHHHHHHHHHH
Q 022965           78 ----F-----N--LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 ----f-----~--l~w~~~s~L~~i~~qF~~~l   99 (289)
                          +     .  -.|++..+|..|+...+..|
T Consensus       103 ~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll  135 (169)
T 1yrv_A          103 HTGQPCIDFLDNPEKWNTNYTLSSILLALQVML  135 (169)
T ss_dssp             TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred             CCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHH
Confidence                0     0  15888888887776655554

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=92.98  E-value=0.9  Score=38.36  Aligned_cols=86  Identities=15%  Similarity=0.268  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-------
Q 022965           14 SFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-------   76 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~-------   76 (289)
                      +--.+|.+|+.++.-+..    +. .+.++......+.-..     |....++|.+|.+||..||.+...=|.       
T Consensus         4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~   83 (169)
T 1yh2_A            4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS   83 (169)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCc
Confidence            445799999999854432    22 2456888888887433     578999999999999999998754442       


Q ss_pred             -------ccc----cccCccccHHHHHHHHHHHH
Q 022965           77 -------IFN----LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 -------~f~----l~w~~~s~L~~i~~qF~~~l   99 (289)
                             .+.    -.|++..+|..|+...+..|
T Consensus        84 ~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll  117 (169)
T 1yh2_A           84 AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLM  117 (169)
T ss_dssp             TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEecccccCCcccCCCCCCcHHHHHHHHHHHH
Confidence                   011    25998888888776555444

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=92.88  E-value=0.78  Score=39.67  Aligned_cols=89  Identities=18%  Similarity=0.255  Sum_probs=62.3

Q ss_pred             CCChhHHHHHHHHHHHhccceeeee-------cCCcc---eEEEEEEeCC----CCEEEEEEEeCCCCCCCCCCccccCC
Q 022965           10 ANSSSFSRSVYSEIEEVGWEHLVRL-------SEDLK---FLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISADVP   75 (289)
Q Consensus        10 ~~~~~~y~~l~~Ei~~igw~~l~~i-------d~~l~---~i~l~~~D~~----~R~H~l~i~l~~~yp~~~P~~~~dlP   75 (289)
                      .....--.+|.+|+.+|.=..-+.+       +.|+.   ...+.+....    |....++|.+|.+||..||.+...-|
T Consensus        25 ~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~  104 (190)
T 3o2u_A           25 PNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK  104 (190)
T ss_dssp             CCCCHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             CCccHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence            3445568899999999962212222       34677   7788877432    57788999999999999999865544


Q ss_pred             Cccc---------------cccCccccHHHHHHHHHHHH
Q 022965           76 YIFN---------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        76 ~~f~---------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                      . |+               -.|++..++..|+...+..|
T Consensus       105 i-~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll  142 (190)
T 3o2u_A          105 I-FHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLF  142 (190)
T ss_dssp             C-CCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             c-ccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHH
Confidence            2 11               25999888888877665544

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=92.82  E-value=0.62  Score=42.27  Aligned_cols=86  Identities=20%  Similarity=0.308  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----
Q 022965           14 SFSRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----   76 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~--------~l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----   76 (289)
                      .-..+|.+|+.+|.-+        .+.-.+.++......+.-.     .|....++|.+|.+||..||.+...=|+    
T Consensus        57 ~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN  136 (253)
T 3e46_A           57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN  136 (253)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCC
Confidence            3478999999998543        1233466799999998832     3578999999999999999987654331    


Q ss_pred             c------c-----ccccCccccHHHHHHHHHHHH
Q 022965           77 I------F-----NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ~------f-----~l~w~~~s~L~~i~~qF~~~l   99 (289)
                      .      +     .-.|++..+|..|+...+..|
T Consensus       137 V~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll  170 (253)
T 3e46_A          137 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALL  170 (253)
T ss_dssp             BCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHH
T ss_pred             ccCCCCeeecccccCCCCCCCCHHHHHHHHHHHh
Confidence            0      0     116999888888776555544

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=92.72  E-value=0.45  Score=41.12  Aligned_cols=88  Identities=14%  Similarity=0.246  Sum_probs=59.4

Q ss_pred             ChhHHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCc-c--
Q 022965           12 SSSFSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYI-F--   78 (289)
Q Consensus        12 ~~~~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~-f--   78 (289)
                      +..--.+|.+|+.+|.-+..     .-.+.++...++.+.-.     .|....++|.+|.+||..||.+...=|.+ |  
T Consensus        12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~~~~~~~   91 (187)
T 2f4w_A           12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC   91 (187)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCT
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCCCceecc
Confidence            34557899999999864432     22355788888888733     35788899999999999999986544410 0  


Q ss_pred             -------cc-----ccCccccHHHHHHHHHHHH
Q 022965           79 -------NL-----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        79 -------~l-----~w~~~s~L~~i~~qF~~~l   99 (289)
                             .+     .|++..++..|+...+..|
T Consensus        92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll  124 (187)
T 2f4w_A           92 NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM  124 (187)
T ss_dssp             TSCBC----------CCTTCCHHHHHHHHHHHH
T ss_pred             CCeEeeeccccCccCCCCcCcHHHHHHHHHHHh
Confidence                   12     5998888887765544444

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=92.19  E-value=0.74  Score=39.18  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhcccee-eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----c------cc
Q 022965           16 SRSVYSEIEEVGWEHL-VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----I------FN   79 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l-~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----~------f~   79 (289)
                      -.+|.+|+.+|.-+.. +..+.++....+.+.-..     |....++|.+|.+||..||.+...=++    .      +.
T Consensus        14 ~~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iC   93 (171)
T 1yf9_A           14 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVC   93 (171)
T ss_dssp             CHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBC
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEe
Confidence            3789999998865532 245678999999887433     578899999999999999998744321    0      00


Q ss_pred             c-----ccCccccHHHHHHHH
Q 022965           80 L-----KWSRKSRLKDLLQQF   95 (289)
Q Consensus        80 l-----~w~~~s~L~~i~~qF   95 (289)
                      +     .|++..++..|+..+
T Consensus        94 l~iL~~~W~p~~~i~~vL~si  114 (171)
T 1yf9_A           94 LDVINQTWTPMYQLENIFDVF  114 (171)
T ss_dssp             HHHHHHHCCTTCCTHHHHHTH
T ss_pred             ccccccCCCCCCcHHHHHHHH
Confidence            1     588777777776654

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=92.17  E-value=1.1  Score=38.34  Aligned_cols=88  Identities=13%  Similarity=0.348  Sum_probs=60.6

Q ss_pred             CChhHHHHHHHHHHHhccceeeee----cCCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCccc---
Q 022965           11 NSSSFSRSVYSEIEEVGWEHLVRL----SEDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN---   79 (289)
Q Consensus        11 ~~~~~y~~l~~Ei~~igw~~l~~i----d~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~---   79 (289)
                      ....--.+|.+|+.++.-..-+++    +.++....+.+--.    .|....++|.+|.+||..||.+...=|+ |+   
T Consensus        23 ~~~~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i-~HPNV  101 (180)
T 2nvu_C           23 KASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV-YHPNI  101 (180)
T ss_dssp             SCCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCC-CBTTB
T ss_pred             CccHHHHHHHHHHHhcCCCCCeEEEecccccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccC-ccCCC
Confidence            355567999999999932222222    35688887776321    2467889999999999999998765442 11   


Q ss_pred             ------------cccCccccHHHHHHHHHHHH
Q 022965           80 ------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                  -.|++..++..|+...+..|
T Consensus       102 ~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll  133 (180)
T 2nvu_C          102 DLEGNVALNILREDWKPVLTINSIIYGLQYLF  133 (180)
T ss_dssp             CTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcEEcccccccCCCCCCHHHHHHHHHHHH
Confidence                        15999888888777665554

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=92.11  E-value=0.93  Score=38.43  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhcc-c---------e---ee--e--ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccc
Q 022965           15 FSRSVYSEIEEVGW-E---------H---LV--R--LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISA   72 (289)
Q Consensus        15 ~y~~l~~Ei~~igw-~---------~---l~--~--id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~   72 (289)
                      --.+|.+|+.+|.- +         .   .+  .  -+.++...+..+.-..     |....++|.+|.+||..||.+..
T Consensus         7 ~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f   86 (172)
T 2y9m_A            7 CMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF   86 (172)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred             HHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEE
Confidence            34788888888764 1         1   12  1  2346888888888433     57899999999999999999876


Q ss_pred             cC-----CCc-c--------c---cccCccccHHHHHHHHHHHH
Q 022965           73 DV-----PYI-F--------N---LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        73 dl-----P~~-f--------~---l~w~~~s~L~~i~~qF~~~l   99 (289)
                      .-     |-. +        .   -.|++..+|..|+...+..|
T Consensus        87 ~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll  130 (172)
T 2y9m_A           87 MQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLL  130 (172)
T ss_dssp             CTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHH
T ss_pred             eeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHH
Confidence            54     211 1        1   15998888888877666554

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=91.99  E-value=0.97  Score=39.28  Aligned_cols=86  Identities=17%  Similarity=0.299  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHhcccee---------------e---eecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCc
Q 022965           14 SFSRSVYSEIEEVGWEHL---------------V---RLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSI   70 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l---------------~---~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~   70 (289)
                      .-.++|.+|+.+|.-+..               +   -.+.++....+.+.-.     .|....++|.+|.+||..||.+
T Consensus        32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V  111 (193)
T 2f4z_A           32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM  111 (193)
T ss_dssp             CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred             HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence            346899999999865432               1   2355688888888743     2578899999999999999988


Q ss_pred             cccCCC----c------cc---c--ccCccccHHHHHHHHHHHH
Q 022965           71 SADVPY----I------FN---L--KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        71 ~~dlP~----~------f~---l--~w~~~s~L~~i~~qF~~~l   99 (289)
                      ...=|+    .      +.   |  .|++..+|..|+...+..|
T Consensus       112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll  155 (193)
T 2f4z_A          112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML  155 (193)
T ss_dssp             EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred             EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHH
Confidence            654431    1      00   1  5999888887776655544

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=91.93  E-value=1.3  Score=37.43  Aligned_cols=85  Identities=22%  Similarity=0.332  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhcccee-----eee-cC-C--cceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----
Q 022965           15 FSRSVYSEIEEVGWEHL-----VRL-SE-D--LKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----   76 (289)
Q Consensus        15 ~y~~l~~Ei~~igw~~l-----~~i-d~-~--l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----   76 (289)
                      --.+|.+|+.++.-+..     +.. +. +  +...++.+.-..     |....++|.+|.+||..||.+...=|+    
T Consensus        26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN  105 (160)
T 2a4d_A           26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG  105 (160)
T ss_dssp             HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence            35799999999875421     222 33 3  788888888433     578999999999999999988654332    


Q ss_pred             ------cc-----c--cccCccccHHHHHHHHHHHH
Q 022965           77 ------IF-----N--LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ------~f-----~--l~w~~~s~L~~i~~qF~~~l   99 (289)
                            .+     .  -.|++..++..|+...+..|
T Consensus       106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll  141 (160)
T 2a4d_A          106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM  141 (160)
T ss_dssp             BCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             EECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHH
Confidence                  01     1  15988888887777655554

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=91.26  E-value=0.45  Score=40.95  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHhcccee-eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----ccc----
Q 022965           14 SFSRSVYSEIEEVGWEHL-VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----IFN----   79 (289)
Q Consensus        14 ~~y~~l~~Ei~~igw~~l-~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----~f~----   79 (289)
                      .--.+|.+|+.++.-+.+ +....++....+.+.-.     .|....++|.+|.+||..||.+...=|+    ...    
T Consensus        25 ~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~  104 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT  104 (179)
T ss_dssp             HHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             HHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence            356799999999842221 22334677777777642     2578899999999999999998754432    111    


Q ss_pred             -------cccCccccHHHHHHHHH
Q 022965           80 -------LKWSRKSRLKDLLQQFR   96 (289)
Q Consensus        80 -------l~w~~~s~L~~i~~qF~   96 (289)
                             -.|++..++..|+..|.
T Consensus       105 ICL~iL~~~WsP~~ti~~iL~s~I  128 (179)
T 2z5d_A          105 VCLDVINQTWTALYDLTNIFESFL  128 (179)
T ss_dssp             BCHHHHHHHCCTTCCTTHHHHTHH
T ss_pred             EeccccccCCCCCCCHHHHHHHHH
Confidence                   14888777777777643

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=90.81  E-value=0.73  Score=38.33  Aligned_cols=79  Identities=15%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhccce--eeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC-cccc--------
Q 022965           17 RSVYSEIEEVGWEH--LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY-IFNL--------   80 (289)
Q Consensus        17 ~~l~~Ei~~igw~~--l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~-~f~l--------   80 (289)
                      .+|.+|+.++.-+.  +.-.+.++...++.+.-.     .|....++|.+|.+||..||.+...=|+ ..++        
T Consensus         5 ~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iC   84 (152)
T 2onu_A            5 TRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVC   84 (152)
T ss_dssp             CHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBC
T ss_pred             HHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEe
Confidence            46777777763222  233456788888888732     3578899999999999999998654332 0011        


Q ss_pred             ------ccCccccHHHHHHHH
Q 022965           81 ------KWSRKSRLKDLLQQF   95 (289)
Q Consensus        81 ------~w~~~s~L~~i~~qF   95 (289)
                            .|++..++..|+..+
T Consensus        85 l~il~~~W~p~~~i~~vl~~i  105 (152)
T 2onu_A           85 LDVINQTWTPLYSLVNVFEVF  105 (152)
T ss_dssp             HHHHHHHCCTTCCHHHHHHTH
T ss_pred             cccccccCCCCCCHHHHHHHH
Confidence                  488877888777664

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=90.49  E-value=0.12  Score=37.70  Aligned_cols=49  Identities=29%  Similarity=0.440  Sum_probs=36.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP  279 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~  279 (289)
                      ....|.||-..            |.  ...|+  .|...||..||.-.|...|.+       .=.||.|+..
T Consensus        11 ~~~~C~vC~~~------------~~--ll~Cd--~C~~~~H~~Cl~P~l~~~P~g-------~W~C~~C~~~   59 (66)
T 2lri_C           11 PGARCGVCGDG------------TD--VLRCT--HCAAAFHWRCHFPAGTSRPGT-------GLRCRSCSGD   59 (66)
T ss_dssp             TTCCCTTTSCC------------TT--CEECS--SSCCEECHHHHCTTTCCCCSS-------SCCCTTTTTC
T ss_pred             CCCCcCCCCCC------------Ce--EEECC--CCCCceecccCCCccCcCCCC-------CEECccccCC
Confidence            44679999632            11  35684  699999999999888887765       3589999865

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=90.27  E-value=1  Score=43.08  Aligned_cols=83  Identities=16%  Similarity=0.378  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcc-------
Q 022965           16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIF-------   78 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f-------   78 (289)
                      -++|.+|+.++.-+..     .-.+.++......+.-.     .|....++|.+|.+||..||.+...-|. |       
T Consensus         5 ~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~   83 (399)
T 4ddg_A            5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSN   83 (399)
T ss_dssp             HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCC-CCTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccc-cccccCCC
Confidence            4689999999865433     12355788888888733     3578889999999999999998654442 1       


Q ss_pred             --------ccccCccccHHHHHHHHHHHH
Q 022965           79 --------NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        79 --------~l~w~~~s~L~~i~~qF~~~l   99 (289)
                              .=.|+|..++..|+...+..|
T Consensus        84 G~iCl~il~~~W~p~~~i~~vL~~i~~ll  112 (399)
T 4ddg_A           84 GSISLDILRSQWSPALTISKVLLSICSLL  112 (399)
T ss_dssp             CBBCCGGGTTSCCTTCCHHHHHHHHHHHH
T ss_pred             CeEeCcccccCCCccccHHHHHHHHHHHH
Confidence                    116999888887776555444

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=90.17  E-value=1.7  Score=36.92  Aligned_cols=85  Identities=22%  Similarity=0.336  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcccee-----eee-cC-C--cceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----
Q 022965           15 FSRSVYSEIEEVGWEHL-----VRL-SE-D--LKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----   76 (289)
Q Consensus        15 ~y~~l~~Ei~~igw~~l-----~~i-d~-~--l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----   76 (289)
                      --.+|.+|+.++.-+..     +.+ +. +  +...+..+.-..     |....++|.+|.+||..||.+...=|+    
T Consensus        36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN  115 (170)
T 2hlw_A           36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG  115 (170)
T ss_dssp             HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence            35899999999865421     222 43 3  788888887432     567889999999999999988654332    


Q ss_pred             ------c-----cc--cccCccccHHHHHHHHHHHH
Q 022965           77 ------I-----FN--LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ------~-----f~--l~w~~~s~L~~i~~qF~~~l   99 (289)
                            .     +.  =.|++..++..|+...+..|
T Consensus       116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll  151 (170)
T 2hlw_A          116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM  151 (170)
T ss_dssp             BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred             EeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHH
Confidence                  0     11  15998888888777665554

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=90.09  E-value=0.17  Score=40.25  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=27.1

Q ss_pred             CCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          240 NSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       240 n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      ...|+|.|=..|...|.+.-          .+.||.|+++|.
T Consensus        17 mIPCkHvFCydCa~~~~~~~----------~k~Cp~C~~~V~   48 (101)
T 3vk6_A           17 MIPCKHVFCYDCAILHEKKG----------DKMCPGCSDPVQ   48 (101)
T ss_dssp             EETTCCEEEHHHHHHHHHTT----------CCBCTTTCCBCS
T ss_pred             eccccccHHHHHHHHHHhcc----------CCCCcCcCCeee
Confidence            36899999999999998641          479999999874

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=89.60  E-value=0.68  Score=40.98  Aligned_cols=83  Identities=24%  Similarity=0.407  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhcccee--ee---ecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC--c------
Q 022965           17 RSVYSEIEEVGWEHL--VR---LSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY--I------   77 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l--~~---id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~--~------   77 (289)
                      .+|.+|+.++.-+..  ++   .+. ++...+..+.-.     .|....++|.+|.+||..||.+...=|+  +      
T Consensus         5 ~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~   84 (215)
T 1tte_A            5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVT   84 (215)
T ss_dssp             HHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSS
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCC
Confidence            689999999865433  22   233 466777666532     2456789999999999999988654332  0      


Q ss_pred             -------cccccCccccHHHHHHHHHHHH
Q 022965           78 -------FNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 -------f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                             +.=.|+|..++..|+...+..|
T Consensus        85 G~ICL~iL~~~WsP~~ti~~VL~sI~sLL  113 (215)
T 1tte_A           85 GAICLDILRNAWSPVITLKSALISLQALL  113 (215)
T ss_dssp             SCCCSSTTTCCSCTTCCHHHHHHHHHHHH
T ss_pred             CEEECccCCCCCCCcCcHHHHHHHHHHHH
Confidence                   0115999888888777655554

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=88.92  E-value=0.41  Score=37.06  Aligned_cols=34  Identities=24%  Similarity=0.548  Sum_probs=23.6

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHH
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDW  255 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eW  255 (289)
                      .+..|.||-..-.         +.-+|   |  --|++.||..||.+=
T Consensus        14 ~D~~C~VC~~~t~---------~~l~p---C--RvC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCEVWTA---------ESLFP---C--RVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTCCCCS---------SCCSS---C--SSSSSCCCHHHHHHH
T ss_pred             CCcccCccccccc---------cceec---c--ccccccccHhhcccc
Confidence            4568999986532         22344   4  346899999999884

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=85.30  E-value=0.33  Score=34.54  Aligned_cols=52  Identities=29%  Similarity=0.653  Sum_probs=36.0

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP  279 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~  279 (289)
                      +++....|.||...            |  --..|+  .|...||..||..=|...|..       .=.||.|+..
T Consensus         7 ~~~~~~~C~vC~~~------------g--~ll~CD--~C~~~fH~~Cl~p~l~~~p~g-------~W~C~~C~~~   58 (61)
T 2l5u_A            7 ETDHQDYCEVCQQG------------G--EIILCD--TCPRAYHMVCLDPDMEKAPEG-------KWSCPHCEKE   58 (61)
T ss_dssp             SSCCCSSCTTTSCC------------S--SEEECS--SSSCEEEHHHHCTTCCSCCCS-------SCCCTTGGGG
T ss_pred             cCCCCCCCccCCCC------------C--cEEECC--CCChhhhhhccCCCCCCCCCC-------ceECcccccc
Confidence            34566789999752            1  124685  699999999997655554543       4579999764

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.06  E-value=6.1  Score=31.13  Aligned_cols=60  Identities=20%  Similarity=0.245  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHhc---cc--eeeeec---CCcceEEEEEEeCC----CCEEEEEEEeCCCCCCCCCCcccc
Q 022965           14 SFSRSVYSEIEEVG---WE--HLVRLS---EDLKFLSFRVIDKK----GRVHCMEIQLDKNYPRSPPSISAD   73 (289)
Q Consensus        14 ~~y~~l~~Ei~~ig---w~--~l~~id---~~l~~i~l~~~D~~----~R~H~l~i~l~~~yp~~~P~~~~d   73 (289)
                      .+......||++|.   =+  .+..++   .+...+++++....    .-.-.|.|.+|.+||..+|.+.+.
T Consensus         7 ~~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A            7 GMAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             CSCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             hHHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            34455677887662   11  222222   22356777776332    234568889999999999988766

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.77  E-value=3.2  Score=32.67  Aligned_cols=60  Identities=15%  Similarity=0.251  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHhc---cceeeeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCcccc
Q 022965           14 SFSRSVYSEIEEVG---WEHLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISAD   73 (289)
Q Consensus        14 ~~y~~l~~Ei~~ig---w~~l~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~d   73 (289)
                      .+-.....||++|.   =+.+..++..-..+++++....     .-.-.|.|.+|.+||.++|.+..-
T Consensus        10 ~~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~   77 (128)
T 2ebm_A           10 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIF   77 (128)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEE
T ss_pred             ChHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEE
Confidence            46677788887762   1444445544466677765321     224468999999999999987754

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=81.93  E-value=0.24  Score=43.13  Aligned_cols=54  Identities=24%  Similarity=0.516  Sum_probs=38.0

Q ss_pred             CCCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          205 NNYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       205 ~~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      +++....|++|-..            |.  -..|+  .|...||..||..-|...|.+       .=.||.|+..-.
T Consensus         3 ~d~~~~~C~~C~~~------------g~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~~-------~W~C~~C~~~~~   56 (207)
T 3u5n_A            3 DDPNEDWCAVCQNG------------GD--LLCCE--KCPKVFHLTCHVPTLLSFPSG-------DWICTFCRDIGK   56 (207)
T ss_dssp             CCSSCSSBTTTCCC------------EE--EEECS--SSSCEECTTTSSSCCSSCCSS-------CCCCTTTSCSSS
T ss_pred             CCCCCCCCCCCCCC------------Cc--eEEcC--CCCCccCCccCCCCCCCCCCC-------CEEeCceeCccc
Confidence            34456679999742            11  24684  499999999998777766654       358999998543

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=80.08  E-value=0.35  Score=34.40  Aligned_cols=51  Identities=29%  Similarity=0.631  Sum_probs=34.7

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP  279 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~  279 (289)
                      +.....|.||...            |.  -..|+  .|...||..||..=|...|..       .=.||.|+.+
T Consensus         6 d~~~~~C~vC~~~------------g~--ll~Cd--~C~~~fH~~Cl~ppl~~~p~g-------~W~C~~C~~~   56 (61)
T 1mm2_A            6 DHHMEFCRVCKDG------------GE--LLCCD--TCPSSYHIHCLNPPLPEIPNG-------EWLCPRCTCP   56 (61)
T ss_dssp             CSSCSSCTTTCCC------------SS--CBCCS--SSCCCBCSSSSSSCCSSCCSS-------CCCCTTTTTT
T ss_pred             cCCCCcCCCCCCC------------CC--EEEcC--CCCHHHcccccCCCcCcCCCC-------ccCChhhcCc
Confidence            4456679999752            11  24685  599999999997655554433       3469999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.39
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.27
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.15
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.13
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.13
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.09
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.05
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.88
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.87
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.65
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.61
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.58
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.44
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.16
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.15
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.0
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.36
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	96.5
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	96.14
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.95
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	95.88
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	95.74
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.51
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.35
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	95.26
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	95.23
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	95.07
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	94.7
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.55
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.42
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	94.27
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	93.86
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.81
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	93.6
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	93.45
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.43
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.4
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.34
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.34
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.11
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	92.98
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	92.76
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	92.46
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	92.12
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	90.61
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	86.84
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	85.75
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	85.36
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	85.08
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	82.12
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	81.73

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.39  E-value=6e-14  Score=98.79  Aligned_cols=52  Identities=35%  Similarity=0.774  Sum_probs=40.2

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      ++.+|+||++.+..         |.   .+-..+.|||.||..||.+||++           +++||+||++|.+
T Consensus         4 d~~~C~ICl~~~~~---------~~---~~~~l~~C~H~Fh~~Ci~~Wl~~-----------~~~CP~CR~~i~v   55 (55)
T d1iyma_           4 DGVECAVCLAELED---------GE---EARFLPRCGHGFHAECVDMWLGS-----------HSTCPLCRLTVVV   55 (55)
T ss_dssp             CSCCCTTTCCCCCT---------TS---CCEECSSSCCEECTTHHHHTTTT-----------CCSCSSSCCCSCC
T ss_pred             CCCCCeEECccccC---------CC---EEEEeCCCCCcccHHHHHHHHHh-----------CCcCCCCCCEeEC
Confidence            44579999999852         11   11122579999999999999998           7899999998754

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7e-13  Score=100.97  Aligned_cols=65  Identities=25%  Similarity=0.536  Sum_probs=42.2

Q ss_pred             CcccccccccccccchhhccccCCCCCcccc--cCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTC--DNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C--~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ...+|+||++.+.....+.....+..++..|  ..+.|||.||..||.+||+.           +++||+||+++..+
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~~~~~   86 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----------RQVCPLDNREWEFQ   86 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-----------CSBCSSSCSBCCEE
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-----------CCcCCCCCCccccc
Confidence            3456999999875321100000111122221  23689999999999999998           78999999998764

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.15  E-value=8.7e-12  Score=90.47  Aligned_cols=48  Identities=31%  Similarity=0.715  Sum_probs=39.0

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      ..+|+||++.+.         +   + .++  ..|||.||..||.+||+.           ..+||+||++|.-
T Consensus         5 ~d~C~IC~~~~~---------~---~-~~~--~~C~H~Fc~~Ci~~w~~~-----------~~~CP~CR~~i~~   52 (68)
T d1chca_           5 AERCPICLEDPS---------N---Y-SMA--LPCLHAFCYVCITRWIRQ-----------NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCC---------S---C-EEE--TTTTEEESTTHHHHHHHH-----------SCSTTTTCCCCCC
T ss_pred             CCCCccCCcCcc---------C---C-cEE--eCCCCcCcHHHHHHHHHh-----------CCcCCCCCcchHh
Confidence            457999999873         1   1 123  789999999999999998           6799999999853

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.13  E-value=1.4e-11  Score=87.20  Aligned_cols=58  Identities=21%  Similarity=0.414  Sum_probs=42.5

Q ss_pred             CCCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          206 NYQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       206 ~~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +++...|.||++.+.         +..+  ..|.-..|+|.||..||.+|++.-   +      ..+||+||+++.+|
T Consensus         3 ded~~~C~IC~~~~~---------~~~~--~~c~c~~c~h~~H~~Cl~~W~~~~---~------~~~CP~Cr~~~~~k   60 (60)
T d1vyxa_           3 DEDVPVCWICNEELG---------NERF--RACGCTGELENVHRSCLSTWLTIS---R------NTACQICGVVYNTR   60 (60)
T ss_dssp             TCSCCEETTTTEECS---------CCCC--CSCCCSSGGGSCCHHHHHHHHHHH---T------CSBCTTTCCBCCCC
T ss_pred             CCCCCCCccCCccCC---------Ccee--EecccCCCCCEEcHHHHHHHHhhC---C------CCCCcccCCeeecC
Confidence            456678999998753         1111  234446789999999999999761   1      35899999998765

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1e-11  Score=85.90  Aligned_cols=50  Identities=24%  Similarity=0.446  Sum_probs=37.3

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVA  281 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~  281 (289)
                      .||+||++.+...+        ..+    ....|||.||..||.+|+++.          .+.||+||+++.
T Consensus         1 leCpICl~~~~~~~--------~~~----~~~~CgH~~c~~C~~~w~~~~----------~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDD--------INF----FPCTCGYQICRFCWHRIRTDE----------NGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGG--------TTC----CSSSSSCCCCHHHHHHHTTTS----------CCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCC--------ceE----EecCCCCccchHHHHHHHhhc----------CCCCCccCCcCC
Confidence            48999999875211        111    125799999999999999861          357999999875

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-11  Score=88.45  Aligned_cols=53  Identities=19%  Similarity=0.423  Sum_probs=38.3

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAV  282 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~  282 (289)
                      +..|+||++.+..        +   ++.+..-..|||.||..||.+||.+-          .+.||+||+++.-
T Consensus         3 d~~CpIC~~~~~~--------~---~~~~~~~~~C~H~fc~~Ci~~~~~~~----------~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYR--------N---PSLKLMVNVCGHTLCESCVDLLFVRG----------AGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHH--------C---SSCCEEECTTCCCEEHHHHHHHHHTT----------SSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeec--------C---CceEEEeCccChHhhHHHHHHHhCcC----------cCCCCCCCcCccc
Confidence            4689999997531        1   11222236799999999999999751          3579999999854

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=6.7e-11  Score=92.90  Aligned_cols=70  Identities=21%  Similarity=0.301  Sum_probs=43.0

Q ss_pred             cccccccccccccchhhccc--cCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccc
Q 022965          209 QVECGICYAQFLPIDEELGA--KSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKI  284 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~--~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~  284 (289)
                      +.+|+||++.+.........  ......+..-..+.|||.||..||.+||+.-.. +     .+.+||+||..+..+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~-~-----~~~~CP~CR~~~~~~~   96 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-D-----GSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-S-----SCCBCTTTCCBSSSCS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCc-C-----CCCccccccchhccCc
Confidence            34799999987522111000  000111222224789999999999999987211 1     1358999999887764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=5.8e-10  Score=83.07  Aligned_cols=48  Identities=23%  Similarity=0.560  Sum_probs=37.2

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ..|.||++.+.         +   |    ..+.|||.||..||..||++    +      ...||+||++|.-.
T Consensus        24 ~~C~IC~~~~~---------~---~----~~~~CgH~fC~~Ci~~wl~~----~------~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          24 QLCKICAENDK---------D---V----KIEPCGHLMCTSCLTSWQES----E------GQGCPFCRCEIKGT   71 (79)
T ss_dssp             TBCTTTSSSBC---------C---E----ECSSSCCEECHHHHHHHHHT----T------CCSCTTTCCCCCCC
T ss_pred             CCCccCCCcCC---------C---e----EEeCCCCeeeHHHHHHHHHH----C------cCcCCCCCcCccCC
Confidence            46999998753         1   1    23679999999999999985    0      35799999998643

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=4e-10  Score=78.75  Aligned_cols=50  Identities=18%  Similarity=0.299  Sum_probs=40.6

Q ss_pred             cccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCccccccccc
Q 022965          211 ECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKISI  286 (289)
Q Consensus       211 eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~~  286 (289)
                      .|+||+..+.              +-++ .++|||.|+..||.+||+.           +++||.||++++.+-.+
T Consensus         2 ~C~Ic~~~~~--------------~Pv~-~~~cGh~fc~~cI~~~l~~-----------~~~CP~c~~~l~~~dLi   51 (56)
T d2baya1           2 LCAISGKVPR--------------RPVL-SPKSRTIFEKSLLEQYVKD-----------TGNDPITNEPLSIEEIV   51 (56)
T ss_dssp             CCTTTCSCCS--------------SEEE-ETTTTEEEEHHHHHHHHHH-----------HSBCTTTCCBCCGGGCE
T ss_pred             CCccCCchHH--------------hcCc-cCCCCCcccHHHHHHHHhh-----------ccCCCccCCcCCHHhce
Confidence            5999999874              1122 3679999999999999998           78999999999876443

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.7e-09  Score=80.21  Aligned_cols=50  Identities=22%  Similarity=0.598  Sum_probs=38.0

Q ss_pred             ccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          210 VECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       210 ~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .+|+||+..+.         +   |-    ...|||.|+..||.+|++...+        ...||+||++++.+
T Consensus        22 l~CpIC~~~~~---------~---pv----~~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          22 LECPICLELIK---------E---PV----STKCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDITKR   71 (103)
T ss_dssp             TSCSSSCCCCS---------S---CC----BCTTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCCTT
T ss_pred             cCCCccCchhC---------C---eE----EcCCCCchhhHHHHHHHHHCCC--------CCcCcCCCCcCChh
Confidence            47999999874         1   31    2579999999999999987211        24799999998643

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4e-09  Score=73.96  Aligned_cols=49  Identities=24%  Similarity=0.481  Sum_probs=36.8

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccccc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVKIS  285 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~~~  285 (289)
                      ....+|+||++.+.         +   |.    ..+|||.||..||.+|              ...||+||++++....
T Consensus         4 ~~~l~C~IC~~~~~---------~---p~----~lpCgH~fC~~Ci~~~--------------~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           4 FQFLRCQQCQAEAK---------C---PK----LLPCLHTLCSGCLEAS--------------GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCCSSCSSSCSSCB---------C---CS----CSTTSCCSBTTTCSSS--------------SSSCSSCCSSSSCCSS
T ss_pred             cCCCCCcccCcccC---------C---CE----EecCCCHHhHHHHHcC--------------CCcCcCCCCcccCCCC
Confidence            34468999999874         1   21    2679999999998543              3589999999987643

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1.4e-08  Score=77.06  Aligned_cols=50  Identities=24%  Similarity=0.581  Sum_probs=38.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ....|+||++.+..            |    ..++|||.|...||.+|+++-          ...||+||.++...
T Consensus        22 ~~l~C~IC~~~~~~------------p----v~~~CgH~FC~~Ci~~~~~~~----------~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          22 KSISCQICEHILAD------------P----VETSCKHLFCRICILRCLKVM----------GSYCPSCRYPCFPT   71 (86)
T ss_dssp             HHTBCTTTCSBCSS------------E----EECTTSCEEEHHHHHHHHHHT----------CSBCTTTCCBCCGG
T ss_pred             cCcCCccCCcchhc------------c----eecCCCChhhHHHHHHHHhhC----------CCcCcccCCCCChh
Confidence            34689999998741            2    237899999999999999861          23799999988643

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.2e-08  Score=76.46  Aligned_cols=47  Identities=23%  Similarity=0.624  Sum_probs=36.7

Q ss_pred             cccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          209 QVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       209 ~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ...|+||+..+.         +   |- ++  ..|||.|+..||.+|+.+             .||.||.++...
T Consensus        22 ~l~C~IC~~~~~---------~---pv-~~--~~CgH~fC~~Ci~~~~~~-------------~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILR---------E---PV-CL--GGCEHIFCSNCVSDCIGT-------------GCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCS---------S---CB-CC--CSSSCCBCTTTGGGGTTT-------------BCSSSCCBCSCS
T ss_pred             cCCCccCCchhh---------c---Cc-ee--CCCCCchhHHHHHHHHhc-------------cccccCCcCchh
Confidence            347999999874         1   21 22  579999999999999854             599999988654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.1e-07  Score=69.05  Aligned_cols=56  Identities=14%  Similarity=0.410  Sum_probs=37.7

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE  278 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~  278 (289)
                      .+..+|+|||+.+.. ++            .-..+.|||.|+..||.+|+++.-.....+   .-.||.|+-
T Consensus         3 ~~~~~C~IC~~~~~~-~~------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~---~i~CP~~~C   58 (94)
T d1wima_           3 SGSSGCKLCLGEYPV-EQ------------MTTIAQCQCIFCTLCLKQYVELLIKEGLET---AISCPDAAC   58 (94)
T ss_dssp             CSBCCCSSSCCCCBG-GG------------EEEETTTTEEEEHHHHHHHHHHHHHHCSCC---CEECSCTTC
T ss_pred             CCCCcCccCCCcccC-Cc------------eEEECCCCCEeCCcCHHHHHHHHHhcCCcc---ccCCcCCCC
Confidence            467799999998741 11            112368999999999999998743322222   227998653

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=6.4e-07  Score=65.80  Aligned_cols=50  Identities=8%  Similarity=0.120  Sum_probs=39.3

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      +...|+||++.+..            |  +.  ..|||.|-..||.+||.+-          ...||.|+++++..
T Consensus         6 ~~l~CpIc~~l~~d------------P--v~--~~cGhtfc~~ci~~~l~~~----------~~~cP~c~~~l~~~   55 (80)
T d2c2la2           6 DYLCGKISFELMRE------------P--CI--TPSGITYDRKDIEEHLQRV----------GHFNPVTRSPLTQE   55 (80)
T ss_dssp             STTBCTTTCSBCSS------------E--EE--CSSCCEEETTHHHHHHHHT----------CSSCTTTCCCCCGG
T ss_pred             ccccCcCcCchhhh------------h--cc--cCCcCeecHHHHHHHHhcC----------CccCCCcccccccc
Confidence            34579999998751            3  33  6899999999999999861          34799999998754

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.00  E-value=1.4e-06  Score=63.62  Aligned_cols=50  Identities=16%  Similarity=0.359  Sum_probs=39.4

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      .+..|+||+..+..            |  +-  ..|||.|-..||.+|++.-          ...||.|+.+++..
T Consensus         7 ~~l~CpIc~~~m~d------------P--V~--~~cgh~fc~~ci~~~~~~~----------~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           7 EYFRCPISLELMKD------------P--VI--VSTGQTYERSSIQKWLDAG----------HKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCSS------------E--EE--ETTTEEEEHHHHHHHHTTT----------CCBCTTTCCBCSSC
T ss_pred             ccCCCcCcCchhhC------------c--eE--ccCCCcchHHHHHHHHHHC----------CCCCCcccccCCcc
Confidence            34689999998751            3  22  5799999999999999861          35799999998764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.2e-05  Score=57.69  Aligned_cols=50  Identities=12%  Similarity=0.062  Sum_probs=38.7

Q ss_pred             CcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          208 QQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       208 ~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ....|.||+..+..            |-.   .+.|||.|=..||.+||++           .+.||+|+++++..
T Consensus        21 ~~f~CPI~~~lm~d------------PV~---~~~~~~ty~r~~I~~~l~~-----------~~~~P~~~~~l~~~   70 (98)
T d1wgma_          21 DEFLDPIMSTLMCD------------PVV---LPSSRVTVDRSTIARHLLS-----------DQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBCSS------------EEE---CTTTCCEEEHHHHHHHTTT-----------SCBCTTTCSBCCTT
T ss_pred             HHhCCcCchhHHHH------------HHh---cccccchhhHHHHHHHHHh-----------cCCcccccccccch
Confidence            35789999999851            211   1335568999999999988           78999999998764

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0065  Score=46.67  Aligned_cols=83  Identities=10%  Similarity=0.171  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhcccee----ee---ecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCC---Ccccc-
Q 022965           17 RSVYSEIEEVGWEHL----VR---LSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVP---YIFNL-   80 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l----~~---id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP---~~f~l-   80 (289)
                      +||.+|+.++.-+..    +.   .+.++....+.+....     |....++|.+|.+||..||.+..--+   ...++ 
T Consensus         6 kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv~   85 (117)
T d2a7la1           6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY   85 (117)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccCc
Confidence            789999999854422    11   2346888888887554     47788999999999999999864322   11111 


Q ss_pred             ------------ccCccccHHHHHHHHHHHH
Q 022965           81 ------------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 ------------~w~~~s~L~~i~~qF~~~l   99 (289)
                                  .|++..++..|+.+++..|
T Consensus        86 ~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lL  116 (117)
T d2a7la1          86 SNGHICLSILTEDWSPALSVQSVCLSIISML  116 (117)
T ss_dssp             TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEeecCcCCCCCcCcHHHHHHHHHHHh
Confidence                        6999889999998887654

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=96.14  E-value=0.021  Score=43.36  Aligned_cols=82  Identities=12%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             HHHHHHHHhcccee----eee-cCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCcccc--CCCcccc-----
Q 022965           18 SVYSEIEEVGWEHL----VRL-SEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISAD--VPYIFNL-----   80 (289)
Q Consensus        18 ~l~~Ei~~igw~~l----~~i-d~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~d--lP~~f~l-----   80 (289)
                      ||.+|+.++.-+..    +.. +.++....+.+....     |....++|.+|.+||..||.+..-  .....++     
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~   81 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD   81 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSB
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCCe
Confidence            68888888854422    333 446888888887544     358899999999999999999742  2122211     


Q ss_pred             --------ccCccccHHHHHHHHHHHH
Q 022965           81 --------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 --------~w~~~s~L~~i~~qF~~~l   99 (289)
                              .|++..++..|+.+.+..|
T Consensus        82 iCl~il~~~Wsp~~ti~~vl~~i~~ll  108 (109)
T d2fo3a1          82 ICLSLLGDDYNPSLSISGLVLSIISML  108 (109)
T ss_dssp             BCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             EEeecccCCCCccCCHHHHHHHHHHHh
Confidence                    6999888999988877655

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=95.95  E-value=0.027  Score=45.23  Aligned_cols=83  Identities=13%  Similarity=0.211  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhccce-----eeeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCcc-cc-----
Q 022965           17 RSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIF-NL-----   80 (289)
Q Consensus        17 ~~l~~Ei~~igw~~-----l~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f-~l-----   80 (289)
                      +||.+|+.++.-+.     +.-.+.++....+.+.-.     .|..-.++|.+|.+||..||.+...-|..- ..     
T Consensus         4 kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g~~~   83 (157)
T d2f4wa1           4 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLC   83 (157)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTSCBC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCCCee
Confidence            58899999985543     233556688888888732     457888999999999999999987766421 01     


Q ss_pred             ---------ccCccccHHHHHHHHHHHH
Q 022965           81 ---------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 ---------~w~~~s~L~~i~~qF~~~l   99 (289)
                               .|++..++..|+.+++.+|
T Consensus        84 ~~~l~~~~~~Wsp~~ti~~il~~i~~ll  111 (157)
T d2f4wa1          84 LSITDFHPDTWNPAWSVSTILTGLLSFM  111 (157)
T ss_dssp             ----------CCTTCCHHHHHHHHHHHH
T ss_pred             eeeccccCCCCCccCcHHHHHHHHHHHc
Confidence                     4999888999888888766

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.015  Score=47.08  Aligned_cols=85  Identities=15%  Similarity=0.294  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhccce--------eeeecCCcceEEEEEEe--CC---------------CCEEEEEEEeCCCCCCCCCCc
Q 022965           16 SRSVYSEIEEVGWEH--------LVRLSEDLKFLSFRVID--KK---------------GRVHCMEIQLDKNYPRSPPSI   70 (289)
Q Consensus        16 y~~l~~Ei~~igw~~--------l~~id~~l~~i~l~~~D--~~---------------~R~H~l~i~l~~~yp~~~P~~   70 (289)
                      -.||++|+.+|..+.        +.-.+.++....+++.-  ..               +....++|.+|.+||..||.+
T Consensus         6 ~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~PP~v   85 (162)
T d1zuoa1           6 SDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFV   85 (162)
T ss_dssp             HHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEE
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhcceE
Confidence            378999999984332        22345568887887763  11               133678999999999999998


Q ss_pred             cccCCC--c--------c---cc---ccCccccHHHHHHHHHHHHH
Q 022965           71 SADVPY--I--------F---NL---KWSRKSRLKDLLQQFREHLE  100 (289)
Q Consensus        71 ~~dlP~--~--------f---~l---~w~~~s~L~~i~~qF~~~le  100 (289)
                      ..--|.  +        +   .|   .|+|..++..|+.+++..|-
T Consensus        86 ~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~  131 (162)
T d1zuoa1          86 RVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLV  131 (162)
T ss_dssp             EEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHc
Confidence            865553  1        1   01   39998899999998888774

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=95.74  E-value=0.028  Score=44.50  Aligned_cols=83  Identities=18%  Similarity=0.307  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcccee------eeecC---CcceEEEEEEe--C---CCCEEEEEEEeCCCCCCCCCCccccCCC-cccc-
Q 022965           17 RSVYSEIEEVGWEHL------VRLSE---DLKFLSFRVID--K---KGRVHCMEIQLDKNYPRSPPSISADVPY-IFNL-   80 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l------~~id~---~l~~i~l~~~D--~---~~R~H~l~i~l~~~yp~~~P~~~~dlP~-~f~l-   80 (289)
                      .||++|++++..+..      .-.+.   ++..-++.+..  .   .|....++|.++.+||..||.+..--|. ..++ 
T Consensus         7 ~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~HpnV~   86 (136)
T d1jatb_           7 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN   86 (136)
T ss_dssp             HHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBC
T ss_pred             HHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccccccc
Confidence            489999999977542      11333   27776666652  2   5678899999999999999998854442 0011 


Q ss_pred             --------------ccCccccHHHHHHHHHHHH
Q 022965           81 --------------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 --------------~w~~~s~L~~i~~qF~~~l   99 (289)
                                    .|++..+|..|+...+.+|
T Consensus        87 ~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL  119 (136)
T d1jatb_          87 PTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM  119 (136)
T ss_dssp             TTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             cCCCeEECCCCcccCcCccCcHHHHHHHHHHHH
Confidence                          5988888988888777666

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=95.51  E-value=0.032  Score=44.21  Aligned_cols=83  Identities=22%  Similarity=0.278  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhcccee-----eee----cCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC--cc--
Q 022965           17 RSVYSEIEEVGWEHL-----VRL----SEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY--IF--   78 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~i----d~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~--~f--   78 (289)
                      .||++|++++..+..     ..+    |.++..-++.+.-..     |-...++|.+|.+||..||.+..-=|.  +.  
T Consensus         8 ~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnV~   87 (139)
T d2a4da1           8 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN   87 (139)
T ss_dssp             HHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBC
T ss_pred             HHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccccCc
Confidence            589999999976532     112    335888888887433     457789999999999999999743331  00  


Q ss_pred             ---------cc----ccCccccHHHHHHHHHHHH
Q 022965           79 ---------NL----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        79 ---------~l----~w~~~s~L~~i~~qF~~~l   99 (289)
                               .+    .|++..+|..|+..++.+|
T Consensus        88 ~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL  121 (139)
T d2a4da1          88 SSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLM  121 (139)
T ss_dssp             TTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEcceecCcccCCCccCcHHHHHHHHHHHH
Confidence                     11    6998888888887766654

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=95.35  E-value=0.069  Score=42.28  Aligned_cols=84  Identities=15%  Similarity=0.260  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccCCCccc-----
Q 022965           15 FSRSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPYIFN-----   79 (289)
Q Consensus        15 ~y~~l~~Ei~~igw~-----~l~~id~~l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-----   79 (289)
                      ..+||.+|+.+|.-+     .+.-.+.|+......+.-..|     ..-.++|.+|.+||..||.+...-|. ++     
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~   80 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDT   80 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCC-CSTTBCT
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCC-CcccCCC
Confidence            357999999998433     333445678888888875554     47899999999999999988765552 11     


Q ss_pred             ----------cccCccccHHHHHHHHHHHH
Q 022965           80 ----------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ----------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                -.|++.-++.+|+..++.+|
T Consensus        81 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll  110 (146)
T d1i7ka_          81 QGNISLDILKEKWSALYDVRTILLSIQSLL  110 (146)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CCccccccccccCCCCcCHHHHHHHHHHHH
Confidence                      16888778888887766655

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.26  E-value=0.08  Score=42.09  Aligned_cols=84  Identities=19%  Similarity=0.347  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhccc--------eeeeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc--c
Q 022965           16 SRSVYSEIEEVGWE--------HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN--L   80 (289)
Q Consensus        16 y~~l~~Ei~~igw~--------~l~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l   80 (289)
                      .++|.+|+.+|.-.        .+.-.+.++....+.+....     |....++|.+|.+||..||.+..-=|. ++  +
T Consensus         6 ~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpni   84 (154)
T d2bepa1           6 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI-WHPNI   84 (154)
T ss_dssp             HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CBTTB
T ss_pred             HHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccC-CCCCe
Confidence            46787777776322        33335667888888887433     567889999999999999987654442 11  1


Q ss_pred             --------------ccCccccHHHHHHHHHHHHH
Q 022965           81 --------------KWSRKSRLKDLLQQFREHLE  100 (289)
Q Consensus        81 --------------~w~~~s~L~~i~~qF~~~le  100 (289)
                                    .|++..+|.+|+..++..|.
T Consensus        85 ~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~  118 (154)
T d2bepa1          85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA  118 (154)
T ss_dssp             CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred             eCCCCccccccccccCCCcCCHHHHHHHHHHHHc
Confidence                          58888889988877666653

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=95.23  E-value=0.1  Score=41.53  Aligned_cols=87  Identities=24%  Similarity=0.371  Sum_probs=64.4

Q ss_pred             ChhHHHHHHHHHHHhcccee----ee-ecCCcceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccCCCccc--
Q 022965           12 SSSFSRSVYSEIEEVGWEHL----VR-LSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPYIFN--   79 (289)
Q Consensus        12 ~~~~y~~l~~Ei~~igw~~l----~~-id~~l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--   79 (289)
                      |++-.++|.+|+.+|--+..    +. .+.|+....+.+.-..|     ....+.|.+|.+||..+|.+..-=|. |+  
T Consensus         4 ~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPn   82 (151)
T d1zdna1           4 PPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI-FHPN   82 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CCTT
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCC-CCce
Confidence            67779999999999954322    22 34569999998875444     46789999999999999998755442 21  


Q ss_pred             -------------cccCccccHHHHHHHHHHHH
Q 022965           80 -------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 -------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                   -.|++..+|..|+..++.+|
T Consensus        83 I~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l  115 (151)
T d1zdna1          83 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLL  115 (151)
T ss_dssp             BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHH
T ss_pred             ecCCCCcccccccccCCccccHHHHHHHHHHHH
Confidence                         16888778888887777665

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=95.07  E-value=0.081  Score=41.71  Aligned_cols=82  Identities=23%  Similarity=0.407  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcccee----e-eec-CCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965           17 RSVYSEIEEVGWEHL----V-RLS-EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------   79 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l----~-~id-~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------   79 (289)
                      +||.+|+.+|.-+..    + ..+ .++....+.+.-.     .|..-.++|.+|.+||..||.+...=++ +.      
T Consensus         4 kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HpnI~~~   82 (149)
T d1fzya_           4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKV-YHPNISSV   82 (149)
T ss_dssp             HHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CBTTBCTT
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCC-cCCcccCC
Confidence            589999999965533    2 233 4688888888743     4468889999999999999998653321 11      


Q ss_pred             ----------cccCccccHHHHHHHHHHHH
Q 022965           80 ----------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ----------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                -.|++..+|.+|+...+.+|
T Consensus        83 ~~~~~~~~~~~~W~p~~ti~~il~~i~~ll  112 (149)
T d1fzya_          83 TGAICLDILKNAWSPVITLKSALISLQALL  112 (149)
T ss_dssp             TCCBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cceeechhhcccCCCcCCHHHHHHHHHHHH
Confidence                      14888888988887666555

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=94.70  E-value=0.11  Score=41.54  Aligned_cols=82  Identities=16%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcccee-----eeec-CCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLS-EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN------   79 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id-~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~------   79 (289)
                      +||.+|+.+|.-+..     .-.+ .++....+.+.-.     .|....++|.+|.+||..||.+...-|. |+      
T Consensus         6 kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~   84 (164)
T d2ucza_           6 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI-LHPNIYPN   84 (164)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-SCTTBCTT
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCc-eeceEcCC
Confidence            689999999855533     2234 4688888888843     5688999999999999999988765442 11      


Q ss_pred             ----------------------cccCccccHHHHHHHHHHHH
Q 022965           80 ----------------------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ----------------------l~w~~~s~L~~i~~qF~~~l   99 (289)
                                            -.|++..+|..|+..++..|
T Consensus        85 G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll  126 (164)
T d2ucza_          85 GEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSML  126 (164)
T ss_dssp             SBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHH
T ss_pred             CCeeeccccCccccccccccccccCCccccHHHHHHHHHHHH
Confidence                                  13888788888887766554

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=94.55  E-value=0.13  Score=39.48  Aligned_cols=82  Identities=17%  Similarity=0.295  Sum_probs=60.0

Q ss_pred             HHHHHHHHhcccee-----eeecC-CcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC-c--------
Q 022965           18 SVYSEIEEVGWEHL-----VRLSE-DLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY-I--------   77 (289)
Q Consensus        18 ~l~~Ei~~igw~~l-----~~id~-~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~-~--------   77 (289)
                      +|.+|+.++.-+..     ...+. |+...++.+.-.     .|..-.++|++|.+||..||.+...=|. .        
T Consensus         3 ~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G~   82 (125)
T d2awfa1           3 LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGD   82 (125)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCB
T ss_pred             hHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCCE
Confidence            56788888855433     23454 699999998853     3577889999999999999998765442 0        


Q ss_pred             c---cc---------------ccCccccHHHHHHHHHHHH
Q 022965           78 F---NL---------------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        78 f---~l---------------~w~~~s~L~~i~~qF~~~l   99 (289)
                      .   .|               .|++..++..|+.+++..|
T Consensus        83 iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll  122 (125)
T d2awfa1          83 VCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  122 (125)
T ss_dssp             BCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             EEeccccCccccccccccccCCcCccCcHHHHHHHHHHHh
Confidence            0   01               3999899999999887766

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=94.42  E-value=0.068  Score=42.00  Aligned_cols=83  Identities=19%  Similarity=0.360  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhcccee-----eeecC-CcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCC----------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSE-DLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~-~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----------   76 (289)
                      ++|.+|+.+|.-+..     +.++. ++....+.+.-.    .|....+.|.+|.+||..||.+...-|.          
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~igp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~   81 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQ   81 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEECCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCCc
Confidence            478999999976643     44444 577777766322    2346789999999999999998654442          


Q ss_pred             -----ccccccCccccHHHHHHHHHHHH
Q 022965           77 -----IFNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 -----~f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                           ...-.|++..++.+|+..++.+|
T Consensus        82 icl~~l~~~~w~p~~~i~~il~~i~~ll  109 (144)
T d1c4zd_          82 VCLPVISAENWKPATKTDQVIQSLIALV  109 (144)
T ss_dssp             BCCTTTSSSSCCTTCCHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCcccHHHHHHHHHHHH
Confidence                 11114888888988887766654

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=94.27  E-value=0.19  Score=40.07  Aligned_cols=84  Identities=14%  Similarity=0.285  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhcccee-----eeecCCcceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccCCCccc--c--
Q 022965           15 FSRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPYIFN--L--   80 (289)
Q Consensus        15 ~y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l--   80 (289)
                      -.+||.+|+.+|.-+..     .--..|+....+.+.-..|     ..-.++|.+|.+||..||.+..--+. +.  +  
T Consensus        10 ~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~~   88 (156)
T d2e2ca_          10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC-WHPNVDQ   88 (156)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CBTTBCT
T ss_pred             HHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccC-cCCCCCC
Confidence            36799999999944322     2233568899988875443     57789999999999999998865332 22  1  


Q ss_pred             -----------ccCccccHHHHHHHHHHHH
Q 022965           81 -----------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 -----------~w~~~s~L~~i~~qF~~~l   99 (289)
                                 .|++..+|.+|+..++..|
T Consensus        89 ~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll  118 (156)
T d2e2ca_          89 SGNICLDILKENWTASYDVRTILLSLQSLL  118 (156)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHT
T ss_pred             CCCccccccCCCCCCcccHHHHHHHHHHHH
Confidence                       5998888888877765544

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=93.86  E-value=0.095  Score=41.67  Aligned_cols=82  Identities=15%  Similarity=0.370  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhcccee-----eeecCCcceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccCCCccc-------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPYIFN-------   79 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-------   79 (289)
                      ++|++|+.+|--+..     .-.+.++....+.+.-..|     -.-.++|.+|.+||..||.+...-+. |+       
T Consensus         6 rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i-~HPnI~~~G   84 (152)
T d1jata_           6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLG   84 (152)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCC-CBTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCC-CCCcCCCCC
Confidence            689999999854433     3345678888888886443     45689999999999999988755442 21       


Q ss_pred             --------cccCccccHHHHHHHHHHHH
Q 022965           80 --------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 --------l~w~~~s~L~~i~~qF~~~l   99 (289)
                              -.|++.-+|..|+..++.+|
T Consensus        85 ~icl~~~~~~W~p~~~i~~il~~i~~ll  112 (152)
T d1jata_          85 RICLDVLKTNWSPALQIRTVLLSIQALL  112 (152)
T ss_dssp             CBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             CeeeccccccCCchhHHHHHHHHHHHHH
Confidence                    15888778888777665554

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=93.81  E-value=0.095  Score=41.35  Aligned_cols=83  Identities=14%  Similarity=0.256  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhccce-----eeeecC-CcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCC----------
Q 022965           17 RSVYSEIEEVGWEH-----LVRLSE-DLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (289)
Q Consensus        17 ~~l~~Ei~~igw~~-----l~~id~-~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----------   76 (289)
                      .||.+|+.+|.-+.     +...+. ++..-.+.+.-.    .|....++|.+|.+||.+||.+...=|.          
T Consensus         3 ~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~iigp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~G~   82 (150)
T d1wzva1           3 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQ   82 (150)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEECCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECCCCC
Confidence            47899999985543     233433 455444444222    2357889999999999999988765442          


Q ss_pred             -----ccccccCccccHHHHHHHHHHHH
Q 022965           77 -----IFNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 -----~f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                           ...=.|++..++.+|+..++.+|
T Consensus        83 icl~~l~~~~W~p~~~i~~il~~i~~ll  110 (150)
T d1wzva1          83 ICLPIISSENWKPCTKTCQVLEALNVLV  110 (150)
T ss_dssp             CCCGGGCTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cccccccccCCCchhHHHHHHHHHHHHH
Confidence                 11115888888998887776665

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=93.60  E-value=0.21  Score=38.85  Aligned_cols=83  Identities=19%  Similarity=0.416  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC----------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~----------   76 (289)
                      ++|.+|+.+|.-+..     ...+.++....+.+.-..     |..-.++|.+|.+||..||.+...=|.          
T Consensus         4 kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~   83 (147)
T d1z2ua1           4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGS   83 (147)
T ss_dssp             HHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECCCCC
Confidence            689999999865543     234566888888886433     466678999999999999988755441          


Q ss_pred             ----ccccccCccccHHHHHHHHHHHH
Q 022965           77 ----IFNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ----~f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                          .+.-.|++..++.+|+..++..|
T Consensus        84 iCl~~l~~~w~p~~~i~~Il~~i~~ll  110 (147)
T d1z2ua1          84 ICLDILRSQWSPALTISKVLLSICSLL  110 (147)
T ss_dssp             BCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             EeeehhcccCCCCCCHHHHHHHHHHHh
Confidence                11126888788888776666544

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.45  E-value=0.29  Score=39.17  Aligned_cols=83  Identities=14%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhcc-ce-----------------eeeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCcccc
Q 022965           17 RSVYSEIEEVGW-EH-----------------LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISAD   73 (289)
Q Consensus        17 ~~l~~Ei~~igw-~~-----------------l~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~d   73 (289)
                      ++|++|+.+|.- .+                 +.-++.|+..-++.+.-..     |..-.++|.+|.+||..||.+..-
T Consensus         4 ~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~F~   83 (161)
T d2f4za1           4 ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFV   83 (161)
T ss_dssp             HHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             hHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEEec
Confidence            578888887732 11                 1224567777788887433     457899999999999999987754


Q ss_pred             CCC--c-------------cccccCccccHHHHHHHHHHHH
Q 022965           74 VPY--I-------------FNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        74 lP~--~-------------f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                      -|+  +             +.-.|++..+|.+|+...+..|
T Consensus        84 t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll  124 (161)
T d2f4za1          84 TKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML  124 (161)
T ss_dssp             SCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHH
Confidence            332  1             0115888888887776555544

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=93.43  E-value=0.29  Score=38.38  Aligned_cols=83  Identities=16%  Similarity=0.271  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhcccee-----eeecCCcceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccCCC----------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPY----------   76 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dlP~----------   76 (289)
                      +||.+|+.+|.-+..     .-.+.++....+.+.-..|     ..-.++|.+|.+||..||.+...-|.          
T Consensus         5 ~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~~g~   84 (154)
T d1yh2a1           5 SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGR   84 (154)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCCCCC
Confidence            689999999865533     2234568899999986665     47889999999999999998754442          


Q ss_pred             -----cc---ccccCccccHHHHHHHHHHHH
Q 022965           77 -----IF---NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 -----~f---~l~w~~~s~L~~i~~qF~~~l   99 (289)
                           ..   .-.|++..++..|+..++..|
T Consensus        85 icl~~l~~~~~~~w~p~~~i~~il~~i~~ll  115 (154)
T d1yh2a1          85 ICLDVLKLPPKGAWRPSLNIATVLTSIQLLM  115 (154)
T ss_dssp             BCCGGGSCTTTSCCCTTSCHHHHHHHHHHHH
T ss_pred             cccccccCCccccCCccccHHHHHHHHHHHh
Confidence                 10   014777667777666554444

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=93.40  E-value=0.31  Score=38.12  Aligned_cols=82  Identities=16%  Similarity=0.358  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhccc-----eeeeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc-------
Q 022965           17 RSVYSEIEEVGWE-----HLVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN-------   79 (289)
Q Consensus        17 ~~l~~Ei~~igw~-----~l~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-------   79 (289)
                      ++|.+|+.+|.-+     .+.-.+.++....+.+.-..     |-...+.|.+|.+||..||.+...=+. ++       
T Consensus         5 kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i-~HPnv~~~G   83 (148)
T d1y6la_           5 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI-YHCNINSQG   83 (148)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CBTTBCTTC
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCC-cCceECCCC
Confidence            5899999999544     33345567777788776522     356789999999999999987644331 11       


Q ss_pred             --------cccCccccHHHHHHHHHHHH
Q 022965           80 --------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 --------l~w~~~s~L~~i~~qF~~~l   99 (289)
                              =.|++..+|.+|+..++..|
T Consensus        84 ~iCl~~l~~~W~p~~~l~~il~~i~~ll  111 (148)
T d1y6la_          84 VICLDILKDNWSPALTISKVLLSICSLL  111 (148)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             eEEEEecCCcCCCcEeHHHHHHHHHHHH
Confidence                    15988888888888777766

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=93.34  E-value=0.21  Score=39.79  Aligned_cols=83  Identities=12%  Similarity=0.386  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhcccee--eee-c-CCcceEEEEEEeC----CCCEEEEEEEeCCCCCCCCCCccccCCCcccc-------
Q 022965           16 SRSVYSEIEEVGWEHL--VRL-S-EDLKFLSFRVIDK----KGRVHCMEIQLDKNYPRSPPSISADVPYIFNL-------   80 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l--~~i-d-~~l~~i~l~~~D~----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~l-------   80 (289)
                      ..||.+|+.+|.-+.-  +.+ + .++....+.+.-.    .|....++|.+|.+||..||.+...=| .|+.       
T Consensus         5 ~~Rl~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~-i~HPnv~~~G~   83 (157)
T d1y8xa1           5 QLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM-VYHPNIDLEGN   83 (157)
T ss_dssp             HHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSC-CCBTTBCTTCB
T ss_pred             HHHHHHHHHHhCCCCCCcEEEcCCCcceEEEEEECCCCCCcCCCeEEEEEEecCCCCCCCceeeeccc-CCCccccccce
Confidence            4578999999853322  222 3 4577777777433    347889999999999999998875433 2221       


Q ss_pred             --------ccCccccHHHHHHHHHHHH
Q 022965           81 --------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 --------~w~~~s~L~~i~~qF~~~l   99 (289)
                              .|++..+|.+|+..++.+|
T Consensus        84 ic~~~~~~~W~p~~~i~~il~~I~~ll  110 (157)
T d1y8xa1          84 VCLNILREDWKPVLTINSIIYGLQYLF  110 (157)
T ss_dssp             BCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             eeeeecccCCCCCCcHHHHHHHHHHHH
Confidence                    5998888988887665554

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=93.34  E-value=0.4  Score=37.56  Aligned_cols=83  Identities=17%  Similarity=0.293  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcccee-----eeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCC-cc-------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPY-IF-------   78 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~-~f-------   78 (289)
                      +||.+|+.+|.-+..     .-.+.++....+.+.-..     |..-.++|.+|.+||..||.+...-|. ..       
T Consensus         5 kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~   84 (149)
T d1j7db_           5 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR   84 (149)
T ss_dssp             HHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCB
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCCCc
Confidence            589999999855433     333457888888887533     356789999999999999988765553 11       


Q ss_pred             ------ccccCccccHHHHHHHHHHHH
Q 022965           79 ------NLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        79 ------~l~w~~~s~L~~i~~qF~~~l   99 (289)
                            .-.|++..++.+++..++.+|
T Consensus        85 icl~~l~~~w~p~~~i~~il~~i~~ll  111 (149)
T d1j7db_          85 ICLDILKDKWSPALQIRTVLLSIQALL  111 (149)
T ss_dssp             BCCGGGTTSCCTTSCHHHHHHHHHHHH
T ss_pred             EehHHhcCCCCCCccHHHHHHHHHHHH
Confidence                  115888778887766555544

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=93.11  E-value=0.23  Score=39.26  Aligned_cols=83  Identities=18%  Similarity=0.286  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc--c---
Q 022965           16 SRSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN--L---   80 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l---   80 (289)
                      +.+|.+|+.++.-+..     .-.+.++...++.+.-.     .|..-.++|.+|.+||..||.+...-|. ++  +   
T Consensus         6 ~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~~   84 (148)
T d1yrva1           6 YLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIP-FHPNVDPH   84 (148)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCC-CCTTBCTT
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeecccc-ccCceecC
Confidence            5789999999955433     23455788888888843     2466789999999999999988754332 11  1   


Q ss_pred             -------------ccCccccHHHHHHHHHHHH
Q 022965           81 -------------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 -------------~w~~~s~L~~i~~qF~~~l   99 (289)
                                   .|++..+|.+|+..++.+|
T Consensus        85 ~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll  116 (148)
T d1yrva1          85 TGQPCIDFLDNPEKWNTNYTLSSILLALQVML  116 (148)
T ss_dssp             TCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred             cccccccccCchhhcCccccHHHHHHHHHHHH
Confidence                         5877777888777666554

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=92.98  E-value=0.31  Score=38.14  Aligned_cols=82  Identities=13%  Similarity=0.354  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhccce-----eeeecCCcceEEEEEEeCCC-----CEEEEEEEeCCCCCCCCCCccccCCCccc-------
Q 022965           17 RSVYSEIEEVGWEH-----LVRLSEDLKFLSFRVIDKKG-----RVHCMEIQLDKNYPRSPPSISADVPYIFN-------   79 (289)
Q Consensus        17 ~~l~~Ei~~igw~~-----l~~id~~l~~i~l~~~D~~~-----R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-------   79 (289)
                      +||.+|+.+|.-+.     +.-.+.++....+.+.-..|     -.-.++|.+|.+||..||.+...=|. |+       
T Consensus         6 kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i-~HPnI~~~G   84 (153)
T d1ayza_           6 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM-FHPNVYANG   84 (153)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CCTTBCTTS
T ss_pred             HHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCC-CccCCCCCC
Confidence            79999999995443     23355667777888874433     45789999999999999988754332 21       


Q ss_pred             --------cccCccccHHHHHHHHHHHH
Q 022965           80 --------LKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 --------l~w~~~s~L~~i~~qF~~~l   99 (289)
                              =.|++..++.+|+...+.+|
T Consensus        85 ~icl~~l~~~W~p~~~i~~il~~i~~ll  112 (153)
T d1ayza_          85 EICLDILQNRWTPTYDVASILTSIQSLF  112 (153)
T ss_dssp             BBCCGGGTTTCCTTCCHHHHHHHHHHHH
T ss_pred             ccccccccccCCCcCcHHHHHHHHHHHH
Confidence                    15888778887776655544

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=92.76  E-value=0.29  Score=38.91  Aligned_cols=83  Identities=22%  Similarity=0.379  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhccceeee-----ec-----CCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCCccc-
Q 022965           16 SRSVYSEIEEVGWEHLVR-----LS-----EDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPYIFN-   79 (289)
Q Consensus        16 y~~l~~Ei~~igw~~l~~-----id-----~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~-   79 (289)
                      .++|.+|..++.-+...-     ..     .++....+.+.-.     .|..-.++|.+|.+||..||.+...=|. ++ 
T Consensus         4 ~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP   82 (156)
T d2uyza1           4 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHP   82 (156)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC-CST
T ss_pred             HHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccc-ccc
Confidence            368999999986554421     11     1577777777654     4467889999999999999987654442 11 


Q ss_pred             ------------c----ccCccccHHHHHHHHHHHH
Q 022965           80 ------------L----KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        80 ------------l----~w~~~s~L~~i~~qF~~~l   99 (289)
                                  +    .|++..+|.+|+..++..|
T Consensus        83 nV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll  118 (156)
T d2uyza1          83 NVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL  118 (156)
T ss_dssp             TBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHH
T ss_pred             cccccceeeecccCcccccCCcccHHHHHHHHHHHh
Confidence                        1    5988888998877766665

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=92.46  E-value=0.25  Score=38.80  Aligned_cols=83  Identities=12%  Similarity=0.312  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhcccee-----eeecCCcceEEEEEEeC-----CCCEEEEEEEeCCCCCCCCCCccccCCC----------
Q 022965           17 RSVYSEIEEVGWEHL-----VRLSEDLKFLSFRVIDK-----KGRVHCMEIQLDKNYPRSPPSISADVPY----------   76 (289)
Q Consensus        17 ~~l~~Ei~~igw~~l-----~~id~~l~~i~l~~~D~-----~~R~H~l~i~l~~~yp~~~P~~~~dlP~----------   76 (289)
                      +||.+|+.+|.-+..     .-.+.++....+.+.-.     .|-.-.++|.+|.+||..||.+...=|.          
T Consensus         6 rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~   85 (149)
T d1z3da1           6 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGS   85 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEcCCCC
Confidence            899999999954322     33455677777777632     2345789999999999999988754442          


Q ss_pred             ----ccccccCccccHHHHHHHHHHHH
Q 022965           77 ----IFNLKWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        77 ----~f~l~w~~~s~L~~i~~qF~~~l   99 (289)
                          .+.-.|++..+|.+|+...+.+|
T Consensus        86 iCl~~l~~~w~p~~~i~~il~~i~~ll  112 (149)
T d1z3da1          86 ICLDILQNRWSPTYDVAAILTSIQSLL  112 (149)
T ss_dssp             BCCGGGTTSCCTTCCHHHHHHHHHHTT
T ss_pred             EEeccccccCCCCCCHHHHHHHHHHHh
Confidence                11226888888888877665444

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=92.12  E-value=0.38  Score=38.12  Aligned_cols=81  Identities=14%  Similarity=0.311  Sum_probs=57.0

Q ss_pred             HHHHHHHHhcccee----ee-ec-CCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc--c----
Q 022965           18 SVYSEIEEVGWEHL----VR-LS-EDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN--L----   80 (289)
Q Consensus        18 ~l~~Ei~~igw~~l----~~-id-~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l----   80 (289)
                      +|.+|+.+|.-+..    +. .+ .|+....+.+....     |-.-.++|.+|.+||..||.+...=|. |+  +    
T Consensus         4 ~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI~~~G   82 (161)
T d1pzva_           4 LLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEI-WHPNIDKEG   82 (161)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCC-CCTTBCTTS
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCC-CCcccCCCC
Confidence            57788888844322    22 34 36888888887533     356789999999999999988765443 21  1    


Q ss_pred             ----------------------ccCccccHHHHHHHHHHHH
Q 022965           81 ----------------------KWSRKSRLKDLLQQFREHL   99 (289)
Q Consensus        81 ----------------------~w~~~s~L~~i~~qF~~~l   99 (289)
                                            .|++..++..|+..++..|
T Consensus        83 ~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll  123 (161)
T d1pzva_          83 NVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISML  123 (161)
T ss_dssp             BBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHH
T ss_pred             ccchhhcCCcccccccccccccccCccccHHHHHHHHHHHH
Confidence                                  3888888988888777665

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=86.84  E-value=1.6  Score=34.50  Aligned_cols=79  Identities=16%  Similarity=0.240  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhccce-eeeecCCcceEEEEEEeCC-----CCEEEEEEEeCCCCCCCCCCccccCCCccc--c--------
Q 022965           17 RSVYSEIEEVGWEH-LVRLSEDLKFLSFRVIDKK-----GRVHCMEIQLDKNYPRSPPSISADVPYIFN--L--------   80 (289)
Q Consensus        17 ~~l~~Ei~~igw~~-l~~id~~l~~i~l~~~D~~-----~R~H~l~i~l~~~yp~~~P~~~~dlP~~f~--l--------   80 (289)
                      .++.+|+.+|--+- -++-+.++....+.+.-..     |..-.++|.+|.+||..+|.+...=++ |+  +        
T Consensus         3 rr~~~e~~~l~~~~~~~~~~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i-~HPnI~~~~G~vc   81 (158)
T d1yf9a1           3 RRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRI-LHPNVDERSGSVC   81 (158)
T ss_dssp             HHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC-CBTTBCTTTCBBC
T ss_pred             hHHHHHHHHHhcCCCcCCCCCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCC-CCCCCccCccccc
Confidence            35667777665442 2555667888888888543     466789999999999999998865442 21  1        


Q ss_pred             ------ccCccccHHHHHHHHH
Q 022965           81 ------KWSRKSRLKDLLQQFR   96 (289)
Q Consensus        81 ------~w~~~s~L~~i~~qF~   96 (289)
                            .|++..++..++..+.
T Consensus        82 l~il~~~W~p~~~i~~il~~~i  103 (158)
T d1yf9a1          82 LDVINQTWTPMYQLENIFDVFL  103 (158)
T ss_dssp             HHHHHHHCCTTCCTHHHHHTHH
T ss_pred             ccccccccCchHhhhhHHHHHH
Confidence                  4766656666555443

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.75  E-value=0.14  Score=33.21  Aligned_cols=34  Identities=35%  Similarity=0.733  Sum_probs=25.1

Q ss_pred             ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCc
Q 022965          236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSE  278 (289)
Q Consensus       236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~  278 (289)
                      ..|  -.|+..||..|+..-+...|+.       .=.||.|+.
T Consensus        16 i~C--d~C~~~~H~~C~~p~~~~~p~~-------~W~C~~C~~   49 (51)
T d1f62a_          16 ILC--DECNKAFHLFCLRPALYEVPDG-------EWQCPACQP   49 (51)
T ss_dssp             EEC--TTTCCEECHHHHCTTCCSCCSS-------CCSCTTTSC
T ss_pred             EEc--CCCCCCCCCCCCCCCCCcCCCC-------CEECcCCcC
Confidence            568  5799999999997765554432       347999975

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.36  E-value=0.094  Score=36.56  Aligned_cols=39  Identities=23%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             ccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcccccc
Q 022965          236 YTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEPVAVK  283 (289)
Q Consensus       236 ~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~i~~~  283 (289)
                      ..|+  .|...||..|+...|...|..       .=.||.|+...+.+
T Consensus        20 l~Cd--~C~~~~H~~C~~p~l~~~p~~-------~W~C~~C~~~~~~~   58 (70)
T d1fp0a1          20 VMCN--QCEFCFHLDCHLPALQDVPGE-------EWSCSLCHVLPDLK   58 (70)
T ss_dssp             EECT--TSSCEECTTSSSTTCCCCCSS-------SCCCCSCCCCCSSC
T ss_pred             EECC--CCChhhccccCCCCcCcCCCC-------CEECcCCcCcCccC
Confidence            5684  699999999998777665543       24799998755444

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=0.081  Score=35.89  Aligned_cols=50  Identities=30%  Similarity=0.629  Sum_probs=33.5

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHHHhhhccCccccccccCCCCCCCcc
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDWLRSITTTRQSYDVLFGNCPYCSEP  279 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eWL~~l~~~r~sF~~i~g~CP~Cr~~  279 (289)
                      +...-|.||...            |.  -..|+  .|...||..||..-+...+..       .=.||.|+.+
T Consensus         7 ~~~~~C~~C~~~------------g~--lv~Cd--~C~~~~H~~C~~~~~~~~~~~-------~W~C~~C~~~   56 (61)
T d1mm2a_           7 HHMEFCRVCKDG------------GE--LLCCD--TCPSSYHIHCLNPPLPEIPNG-------EWLCPRCTCP   56 (61)
T ss_dssp             SSCSSCTTTCCC------------SS--CBCCS--SSCCCBCSSSSSSCCSSCCSS-------CCCCTTTTTT
T ss_pred             CCcCCCcCCCCC------------Ce--EEEeC--CCCccCchhhcCCCcCcCCCC-------cEECCCCcCc
Confidence            344569999642            22  35784  699999999996555544332       3479999865

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=0.54  Score=34.40  Aligned_cols=35  Identities=20%  Similarity=0.443  Sum_probs=23.5

Q ss_pred             CCcccccccccccccchhhccccCCCCCcccccCCCCCCcchhhHHHHH
Q 022965          207 YQQVECGICYAQFLPIDEELGAKSGGGTDYTCDNSSCSKAFHSVCLGDW  255 (289)
Q Consensus       207 ~~~~eC~ICy~~~l~~d~~~~~~~g~~Pd~~C~n~~C~h~FH~~CL~eW  255 (289)
                      ..+..|.||-. +.        .+..+|=+     -|++.||..||.+=
T Consensus        13 ~~D~mC~vC~v-~t--------~~~l~pCR-----vCtRv~H~~CL~r~   47 (89)
T d1wila_          13 VNDEMCDVCEV-WT--------AESLFPCR-----VCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTTCC-CC--------SSCCSSCS-----SSSSCCCHHHHHHH
T ss_pred             CcCccccccCc-cc--------ccceecce-----eecchhhHHHHHHh
Confidence            35678999944 32        23345544     46889999999873

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.73  E-value=1.4  Score=34.25  Aligned_cols=51  Identities=22%  Similarity=0.317  Sum_probs=34.3

Q ss_pred             CCEEEE--EEEeCCCCCCCCCCccccCC-------Ccccc------------ccC-ccccHHHHHHHHHHHHHH
Q 022965           50 GRVHCM--EIQLDKNYPRSPPSISADVP-------YIFNL------------KWS-RKSRLKDLLQQFREHLEK  101 (289)
Q Consensus        50 ~R~H~l--~i~l~~~yp~~~P~~~~dlP-------~~f~l------------~w~-~~s~L~~i~~qF~~~le~  101 (289)
                      |....+  .|.+|.+||..||.|.+.-.       .+ .+            +|. +.++|.+++...+.++..
T Consensus        63 g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~-~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          63 GNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGK-HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             TEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSS-SBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCC-eECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCC
Confidence            444445  66689999999999987521       11 11            575 456788888877776653