Citrus Sinensis ID: 022966

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA
cccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
ccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccc
MGKDVEVAeqqggggefsakdyhdpppaplidfeelgkWSFYRAVIAEFIATLLFLYVTVLTVIGyksqtdpnlntdqcggvGILGIAWAFGGMIFILVYCTagisgghinpaVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYnryggganeladgynkgtglgaEIIGTFVLVYTVFsatdpkrsardshvpvlaplpiGFAVFMVHLAtipitgtginparsfGAAVIYnkekawddqwiFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA
MGKDVEVAEqqggggefsakdyhdPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA
MGKDVEVAeqqggggeFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAtllflyvtvltvIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA
*****************************LIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD*******SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALG******
*************************PPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA*************
*************GGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA
********************DYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQT****NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALG******
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query289 2.2.26 [Sep-21-2011]
Q9ATM4287 Aquaporin PIP2-7 OS=Zea m N/A no 0.989 0.996 0.820 1e-138
Q6K215288 Probable aquaporin PIP2-2 yes no 0.989 0.993 0.828 1e-138
Q9FF53291 Probable aquaporin PIP2-4 yes no 0.979 0.972 0.836 1e-137
Q84RL7290 Aquaporin PIP2-1 OS=Zea m N/A no 0.996 0.993 0.828 1e-136
Q9ATM6288 Aquaporin PIP2-4 OS=Zea m N/A no 0.989 0.993 0.824 1e-136
Q8H5N9290 Probable aquaporin PIP2-1 no no 0.996 0.993 0.831 1e-136
Q9ATM8292 Aquaporin PIP2-2 OS=Zea m N/A no 0.996 0.986 0.808 1e-135
P43286287 Aquaporin PIP2-1 OS=Arabi no no 0.986 0.993 0.820 1e-135
Q9ATM7289 Aquaporin PIP2-3 OS=Zea m N/A no 0.982 0.982 0.823 1e-134
P43287285 Aquaporin PIP2-2 OS=Arabi no no 0.979 0.992 0.816 1e-134
>sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1 Back     alignment and function desciption
 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/290 (82%), Positives = 258/290 (88%), Gaps = 4/290 (1%)

Query: 1   MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTV 60
           M KDVE   +QG   E+SAKDYHDPPPAPLID +EL KWS YRA IAEFIATLLFLY+TV
Sbjct: 1   MAKDVEQVTEQG---EYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITV 57

Query: 61  LTVIGYKSQTDPNL-NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLF 119
           LT+IGYK Q+D  +    +C GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLF
Sbjct: 58  LTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLF 117

Query: 120 LGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEI 179
           LGRKVSL+RALLYM+AQC GAICG G  K FQKS+YNRYGGG N ++DGYNKGT LGAEI
Sbjct: 118 LGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEI 177

Query: 180 IGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGA 239
           IGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSFG 
Sbjct: 178 IGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGP 237

Query: 240 AVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 289
           AVI+N +KAWDDQWI+WVGPF+GA VAA YHQYILR +AIKALGSFRSNA
Sbjct: 238 AVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA 287
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Zea mays (taxid: 4577)
>sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF53|PIP24_ARATH Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q84RL7|PIP21_MAIZE Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q9ATM6|PIP24_MAIZE Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q8H5N9|PIP21_ORYSJ Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM8|PIP22_MAIZE Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|P43286|PIP21_ARATH Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM7|PIP23_MAIZE Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|P43287|PIP22_ARATH Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
255578852287 Aquaporin PIP2.1, putative [Ricinus comm 0.993 1.0 0.937 1e-154
1657948287 MipC [Mesembryanthemum crystallinum] 0.993 1.0 0.910 1e-150
82659447281 aquaporin [Stevia rebaudiana] 0.955 0.982 0.925 1e-147
255557012288 Aquaporin PIP2.2, putative [Ricinus comm 0.989 0.993 0.878 1e-146
383479030285 aquaporin PIP2;2 [Quercus petraea] 0.986 1.0 0.889 1e-146
260408312288 plasma membrane intrinsic protein [Hevea 0.989 0.993 0.878 1e-146
58700408283 putative plasma membrane intrinsic prote 0.972 0.992 0.885 1e-145
224068717285 aquaporin, MIP family, PIP subfamily [Po 0.979 0.992 0.861 1e-144
224104639284 aquaporin, MIP family, PIP subfamily [Po 0.982 1.0 0.878 1e-144
444300810287 aquaporin protein 11 [Camellia sinensis] 0.982 0.989 0.866 1e-144
>gi|255578852|ref|XP_002530280.1| Aquaporin PIP2.1, putative [Ricinus communis] gi|223530178|gb|EEF32087.1| Aquaporin PIP2.1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/289 (93%), Positives = 277/289 (95%), Gaps = 2/289 (0%)

Query: 1   MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTV 60
           M KDVEVAE  GG  EFSAKDYHDPPPAPLID +ELGKWSFYRA+IAEFIATLLFLY+TV
Sbjct: 1   MAKDVEVAEATGG--EFSAKDYHDPPPAPLIDVDELGKWSFYRALIAEFIATLLFLYITV 58

Query: 61  LTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL 120
           LTVIGYKSQTDP+ N D CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL
Sbjct: 59  LTVIGYKSQTDPDKNADACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL 118

Query: 121 GRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEII 180
           GRKVSLIRAL YMVAQCLGAICGCG VKAFQK+YYNRYGGGANELADGYNKGTGLGAEII
Sbjct: 119 GRKVSLIRALGYMVAQCLGAICGCGLVKAFQKAYYNRYGGGANELADGYNKGTGLGAEII 178

Query: 181 GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 240
           GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA
Sbjct: 179 GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 238

Query: 241 VIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 289
           VIYNKEKAWDDQWIFWVGPFIGA +AAFYHQYILRAAAIKALGSFRSNA
Sbjct: 239 VIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQYILRAAAIKALGSFRSNA 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|1657948|gb|AAB18227.1| MipC [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|82659447|gb|ABB88840.1| aquaporin [Stevia rebaudiana] Back     alignment and taxonomy information
>gi|255557012|ref|XP_002519539.1| Aquaporin PIP2.2, putative [Ricinus communis] gi|223541402|gb|EEF42953.1| Aquaporin PIP2.2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|383479030|gb|AFH36337.1| aquaporin PIP2;2 [Quercus petraea] Back     alignment and taxonomy information
>gi|260408312|gb|ACX37450.1| plasma membrane intrinsic protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|58700408|gb|AAW80918.1| putative plasma membrane intrinsic protein [Astragalus membranaceus] Back     alignment and taxonomy information
>gi|224068717|ref|XP_002326182.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118489416|gb|ABK96511.1| unknown [Populus trichocarpa x Populus deltoides] gi|222833375|gb|EEE71852.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224104639|ref|XP_002313510.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222849918|gb|EEE87465.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|444300810|gb|AGD98714.1| aquaporin protein 11 [Camellia sinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.934 0.927 0.829 4.6e-121
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.986 0.993 0.778 1.3e-118
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.937 0.947 0.800 2e-118
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.979 0.992 0.775 2.6e-118
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.979 0.992 0.768 2.1e-116
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.913 0.942 0.807 1.2e-115
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.910 0.946 0.799 4.1e-113
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.934 0.934 0.766 1.1e-112
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.885 0.891 0.709 9.4e-98
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.885 0.895 0.709 2.5e-97
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 224/270 (82%), Positives = 234/270 (86%)

Query:    18 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTD 77
             +A+DY DPPPAP  D EEL KW  YRAVIAEF+A            IGYK+QTD      
Sbjct:    14 AARDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGV 73

Query:    78 QCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQC 137
              CGGVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFL RKVSL+R +LY+VAQC
Sbjct:    74 DCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQC 133

Query:   138 LGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 197
             LGAICGCGFVKAFQ SYY RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR
Sbjct:   134 LGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 193

Query:   198 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWV 257
             +ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWV
Sbjct:   194 NARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWV 253

Query:   258 GPFIGAFVAAFYHQYILRAAAIKALGSFRS 287
             GP IGA  AAFYHQ+ILRAAAIKALGSF S
Sbjct:   254 GPMIGAAAAAFYHQFILRAAAIKALGSFGS 283
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;RCA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0048767 "root hair elongation" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25794PIP2_PEANo assigned EC number0.70720.88580.8858N/Ano
Q8GRI8PIP25_ORYSJNo assigned EC number0.78000.97230.9929nono
Q8LAA6PIP15_ARATHNo assigned EC number0.72720.92380.9303nono
P93004PIP27_ARATHNo assigned EC number0.82040.95150.9821nono
Q41870PIP11_MAIZENo assigned EC number0.68700.88230.8885N/Ano
P43287PIP22_ARATHNo assigned EC number0.81660.97920.9929nono
P43286PIP21_ARATHNo assigned EC number0.82000.98610.9930nono
Q84RL7PIP21_MAIZENo assigned EC number0.82810.99650.9931N/Ano
Q8H5N9PIP21_ORYSJNo assigned EC number0.83160.99650.9931nono
P30302PIP23_ARATHNo assigned EC number0.81310.97920.9929nono
Q9AQU5PIP13_MAIZENo assigned EC number0.71750.88580.8767N/Ano
Q8GRT8PIP24_ORYSJNo assigned EC number0.78690.98260.9930nono
Q9AR14PIP15_MAIZENo assigned EC number0.71750.88580.8888N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.77660.98960.9930N/Ano
P61837PIP11_ARATHNo assigned EC number0.71420.92380.9335nono
Q08451PIP1_SOLLCNo assigned EC number0.71530.90310.9125N/Ano
Q08733PIP13_ARATHNo assigned EC number0.72520.92380.9335nono
P61838PIP11_VICFANo assigned EC number0.71420.92380.9335N/Ano
P42767PIP1_ATRCANo assigned EC number0.77730.95500.9787N/Ano
Q06611PIP12_ARATHNo assigned EC number0.71420.92380.9335nono
Q9ATN0PIP16_MAIZENo assigned EC number0.69080.88580.8648N/Ano
Q9ZV07PIP26_ARATHNo assigned EC number0.77770.97920.9792nono
Q6K215PIP22_ORYSJNo assigned EC number0.82810.98960.9930yesno
Q39196PIP14_ARATHNo assigned EC number0.70620.94460.9512nono
Q9SV31PIP25_ARATHNo assigned EC number0.81780.96880.9790nono
Q7XUA6PIP23_ORYSJNo assigned EC number0.81310.93420.9310nono
Q9XF59PIP12_MAIZENo assigned EC number0.71370.88580.8858N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.78890.96880.9824N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.83620.97920.9725yesno
Q9ZVX8PIP28_ARATHNo assigned EC number0.79860.95150.9892nono
Q7XSQ9PIP12_ORYSJNo assigned EC number0.73660.88580.8888nono
Q9ATM4PIP27_MAIZENo assigned EC number0.82060.98960.9965N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.78440.95500.9787nono
Q9ATM6PIP24_MAIZENo assigned EC number0.82470.98960.9930N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.82350.98260.9826N/Ano
Q6EU94PIP11_ORYSJNo assigned EC number0.70110.90650.9065nono
Q9ATM8PIP22_MAIZENo assigned EC number0.80880.99650.9863N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-97
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 4e-76
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 1e-63
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-42
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 3e-38
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 4e-36
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-33
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-32
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 3e-22
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-19
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-17
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-17
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 7e-16
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 0.004
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  285 bits (731), Expect = 2e-97
 Identities = 122/236 (51%), Positives = 149/236 (63%), Gaps = 18/236 (7%)

Query: 35  ELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGM 94
           EL   SF+RAVIAEF+ATLLF++  V + +G K               G+L +A AFG  
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----------GLLAVALAFGLA 49

Query: 95  IFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY 154
           +F LVYCT  ISG H+NPAVTF L +GR++SL+RA+ Y++AQ LGAICG   +K      
Sbjct: 50  LFTLVYCTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNG- 108

Query: 155 YNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 214
             R GG AN LA G N G     EII TF LVYTVF+ TD  R+    HV   APL IGF
Sbjct: 109 LQRAGGFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGF 165

Query: 215 AVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 270
           AVF+ HLA  P TG  +NPARSFG AV+  K   WDD W++WVGP IGA +AA  +
Sbjct: 166 AVFLNHLAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 289
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.68
PLN00184 296 aquaporin NIP1; Provisional 99.67
PLN00183 274 putative aquaporin NIP7; Provisional 99.6
PLN00182 283 putative aquaporin NIP4; Provisional 99.59
PLN00166 250 aquaporin TIP2; Provisional 99.58
PLN00167 256 aquaporin TIP5; Provisional 99.56
PTZ00016 294 aquaglyceroporin; Provisional 99.56
PRK05420 231 aquaporin Z; Provisional 99.54
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.52
PLN00027 252 aquaporin TIP; Provisional 99.52
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.48
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.42
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.41
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.35
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.27
PRK10805285 formate transporter; Provisional 95.17
COG2116265 FocA Formate/nitrite family of transporters [Inorg 94.75
PRK11562268 nitrite transporter NirC; Provisional 89.61
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-53  Score=367.31  Aligned_cols=231  Identities=51%  Similarity=0.838  Sum_probs=207.2

Q ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHH
Q 022966           34 EELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPA  113 (289)
Q Consensus        34 ~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPa  113 (289)
                      .+.++++.+|++++||++|++++|++|+++......         +...+.+.+++++|+.+++.+++++++||||+|||
T Consensus         3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---------~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPA   73 (238)
T KOG0223|consen    3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---------GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPA   73 (238)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCCchhHHHHHHHHHHHHHHHhhhccccccccCHH
Confidence            345678999999999999999999999988765532         12345788999999999999999999999999999


Q ss_pred             HHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCCCccccCCCCcchhhhHHHHHHHHHHHHHHHH-h
Q 022966          114 VTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS-A  192 (289)
Q Consensus       114 VTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~-~  192 (289)
                      ||+++++.|++++.+++.|+.+|++|+++|+.+++.+.+++.+..+.+.+.+.++.+..|+++.|++.||+|++++++ .
T Consensus        74 VT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a  153 (238)
T KOG0223|consen   74 VTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATA  153 (238)
T ss_pred             HHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEe
Confidence            999999999999999999999999999999999999999865555566677889999999999999999999999998 7


Q ss_pred             cCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhhHHHHHHHHHHHHH
Q 022966          193 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY  272 (289)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~  272 (289)
                      +|+|++       .+.|+.||+++.+.+++.+.+||++|||||+|||+++++   .|+++|+||++|++|+++++++|++
T Consensus       154 ~d~~~~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~  223 (238)
T KOG0223|consen  154 TDPRRS-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRL  223 (238)
T ss_pred             ecCCCc-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHH
Confidence            777654       478999999999999999999999999999999999976   4999999999999999999999999


Q ss_pred             Hhhhhhhhhcc
Q 022966          273 ILRAAAIKALG  283 (289)
Q Consensus       273 ~~~~~~~~~~~  283 (289)
                      ++++++.+...
T Consensus       224 v~~~~~~~~~~  234 (238)
T KOG0223|consen  224 VFIPDESEPTK  234 (238)
T ss_pred             hccCccccccC
Confidence            99988555443

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-119
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-119
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-118
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-118
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-118
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 2e-42
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 3e-41
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 7e-35
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 8e-35
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 8e-35
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 3e-33
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-29
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 5e-28
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-27
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 1e-26
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 2e-26
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 1e-17
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 4e-17
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 4e-17
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-16
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 1e-16
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-16
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 6e-16
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 5e-15
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 8e-15
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-14
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-11
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-11
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-10
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 5e-04
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/269 (78%), Positives = 224/269 (83%), Gaps = 6/269 (2%)
Query: 20  KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
           KDY DPPPAP  D  EL  WSF+RA IAEFIA            IG+  +T        C
Sbjct: 16  KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 69
Query: 80  GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
           G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQCLG
Sbjct: 70  GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLG 129
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
           AICG G VKAF K  YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 130 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 189
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGP 259
           RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N  K WDDQWIFWVGP
Sbjct: 190 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGP 249
Query: 260 FIGAFVAAFYHQYILRAAAIKALGSFRSN 288
           FIGA VAA YHQY+LRAAAIKALGSFRSN
Sbjct: 250 FIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-145
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-115
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-108
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-107
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-105
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-103
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-103
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-102
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 2e-05
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-100
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-100
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 1e-78
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 4e-49
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 8e-48
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  408 bits (1050), Expect = e-145
 Identities = 222/288 (77%), Positives = 238/288 (82%), Gaps = 10/288 (3%)

Query: 1   MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTV 60
           M K+V    Q         KDY DPPPAP  D  EL  WSF+RA IAEFIATLLFLY+TV
Sbjct: 24  MSKEVSEEAQ----AHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITV 79

Query: 61  LTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL 120
            TVIG+  +T        CG VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL
Sbjct: 80  ATVIGHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 133

Query: 121 GRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEII 180
            RKV L+RAL+YM+AQCLGAICG G VKAF K  YN++GGGAN +A GYNKGT LGAEII
Sbjct: 134 ARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEII 193

Query: 181 GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 240
           GTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAA
Sbjct: 194 GTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 253

Query: 241 VIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 288
           VI+N  K WDDQWIFWVGPFIGA VAA YHQY+LRAAAIKALG FRSN
Sbjct: 254 VIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query289
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.62
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.55
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.54
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.52
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.52
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.51
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.51
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.5
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.48
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.48
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.47
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.43
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.42
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 92.56
3kly_A280 Putative formate transporter 1; membrane protein, 88.16
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=1.5e-63  Score=449.08  Aligned_cols=279  Identities=80%  Similarity=1.319  Sum_probs=210.3

Q ss_pred             CCCcHHHHHhhCCCCcccccCCCCCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 022966            1 MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCG   80 (289)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~   80 (289)
                      |.||+|..|+    +..+.||++||++++..+.+|+++++++|++++||+|||+|+|++++++++...+...      ..
T Consensus        24 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~------~~   93 (304)
T 3cn5_A           24 MSKEVSEEAQ----AHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV------CG   93 (304)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCST------TC
T ss_pred             HHHHhhcccc----ccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCC------CC
Confidence            6788766432    3456799999999999999999999999999999999999999999988765433211      23


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHHhcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhcCC
Q 022966           81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG  160 (289)
Q Consensus        81 ~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~  160 (289)
                      ..+++.+++++|+++++++|+++++||||+|||||+++++.|+++|++++.||++|++||++|++++|.++++.++..+.
T Consensus        94 ~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~  173 (304)
T 3cn5_A           94 SVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG  173 (304)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTT
T ss_pred             CCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999987766665


Q ss_pred             CccccCCCCcchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHH
Q 022966          161 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA  240 (289)
Q Consensus       161 ~~~~~~~~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~  240 (289)
                      +.+.+.++.+..++|+.|+++||+|+++++.+.|+++.....+.+.+.|+.||++++++.++++++||+++||||||||+
T Consensus       174 g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPa  253 (304)
T 3cn5_A          174 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAA  253 (304)
T ss_dssp             TCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             cccccCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHH
Confidence            66666677889999999999999999999988886654333223458899999999999999999999999999999999


Q ss_pred             HHhCCCCCCCcceehhhhhHHHHHHHHHHHHHHhhhhhhhhcccccCCC
Q 022966          241 VIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA  289 (289)
Q Consensus       241 i~~~~~~~~~~~wvy~v~p~lGai~a~~~~~~~~~~~~~~~~~~~~~~~  289 (289)
                      +++++...|+++|+||++|++|+++|+++|++++++++.+..+.||.+|
T Consensus       254 l~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~~~~~~~~~~~~~  302 (304)
T 3cn5_A          254 VIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNP  302 (304)
T ss_dssp             HHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCCC-----------
T ss_pred             HHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCCCCCcccccccCC
Confidence            9865455799999999999999999999999999988777776777654
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 289
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-56
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 5e-49
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 7e-40
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 9e-40
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  181 bits (459), Expect = 1e-56
 Identities = 101/241 (41%), Positives = 140/241 (58%), Gaps = 10/241 (4%)

Query: 34  EELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGG 93
            E  K  F+RAV+AEF+A +LF+++++ + +G+      N  T        + ++ AFG 
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTG--AVQDNVKVSLAFGL 60

Query: 94  MIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS 153
            I  L      ISG H+NPAVT GL L  ++S++RA++Y++AQC+GAI     +     S
Sbjct: 61  SIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS 120

Query: 154 YYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIG 213
             +    G N LA G N G GLG EIIGT  LV  V + TD +R      +    PL IG
Sbjct: 121 LPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIG 175

Query: 214 FAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 273
           F+V + HL  I  TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +I
Sbjct: 176 FSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDFI 232

Query: 274 L 274
           L
Sbjct: 233 L 233
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query289
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.56
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.46
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.4
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.37
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-51  Score=361.24  Aligned_cols=225  Identities=28%  Similarity=0.408  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhcCccccccCHHHHHHHHH
Q 022966           41 FYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL  120 (289)
Q Consensus        41 l~r~~~aEflgT~llvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPaVTla~~l  120 (289)
                      +.|+|++||+||++|+|++++++........         ..+.+.+++++|+++++.+++++++||||+|||||+++++
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~---------~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i   72 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---------SFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWL   72 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCC---------CcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHH
Confidence            6789999999999999999988765543322         2346789999999999999999999999999999999999


Q ss_pred             hcCCchhHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhc-----------------CCCccccCCCCcchhhhHHHHHHHH
Q 022966          121 GRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRY-----------------GGGANELADGYNKGTGLGAEIIGTF  183 (289)
Q Consensus       121 ~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~s~~~~~~~E~~~T~  183 (289)
                      .|+++|.+++.|+++|++|+++|+++++.++++.+.+.                 +...+.+.++.+..++|+.|+++|+
T Consensus        73 ~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf  152 (254)
T d1fx8a_          73 FACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITA  152 (254)
T ss_dssp             HSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCcHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988654321                 1123344567789999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcchhHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHh----------CCCCCCCcce
Q 022966          184 VLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY----------NKEKAWDDQW  253 (289)
Q Consensus       184 ~Lv~~v~~~~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~----------~~~~~~~~~w  253 (289)
                      +|+++++.+.+++++..+   ....|+.+|+.+.+.+.+.+++||+++||||||||+++.          .++.+|+++|
T Consensus       153 ~lv~~il~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~w  229 (254)
T d1fx8a_         153 ILMGLILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFL  229 (254)
T ss_dssp             HHHHHHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTH
T ss_pred             HHHHHHHHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeee
Confidence            999999999988776443   357899999999999999999999999999999999984          1246899999


Q ss_pred             ehhhhhHHHHHHHHHHHHHHhhhh
Q 022966          254 IFWVGPFIGAFVAAFYHQYILRAA  277 (289)
Q Consensus       254 vy~v~p~lGai~a~~~~~~~~~~~  277 (289)
                      +||++|++|+++++++||+++..+
T Consensus       230 vy~vgP~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         230 VPLFGPIVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHTGGG
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999998664
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure